Acute intermittent porphyria
diseaseOn this page
Also known as AIPHMBS deficiencyhydroxymethylbilane synthase deficiencyporphyria, acute intermittent
Summary
Acute intermittent porphyria (MONDO:0008294) is a disease caused by HMBS (GenCC Strong), with 5 cohort genes and 15 clinical trials. The dominant Reactome pathway is Heme biosynthesis (3 cohort genes). Top therapeutic interventions include chlorpromazine hydrochloride, givosiran, and hemin.
At a glance
- Prevalence: 1-9 / 1 000 000 (Europe) [Orphanet-validated]
- Causal gene: HMBS (GenCC Strong)
- Cohort genes: 5
- ClinVar variants: 141
- Phenotypes (HPO): 51
- Clinical trials: 15
Clinical features
Epidemiology
Prevalence records
22 prevalence record(s), Orphanet, top 20 (validated / broadest geography first):
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Annual incidence | <1 / 1 000 000 | 0.013 | Europe | Validated |
| Point prevalence | 1-9 / 1 000 000 | 0.54 | Europe | Validated |
| Annual incidence | <1 / 1 000 000 | 0.012 | France | Validated |
| Annual incidence | <1 / 1 000 000 | 0.011 | Italy | Validated |
| Annual incidence | <1 / 1 000 000 | 0.013 | Finland | Validated |
| Annual incidence | <1 / 1 000 000 | 0.018 | Netherlands | Validated |
| Annual incidence | <1 / 1 000 000 | 0.014 | Norway | Validated |
| Annual incidence | <1 / 1 000 000 | 0.016 | Poland | Validated |
| Annual incidence | <1 / 1 000 000 | 0.014 | Spain | Validated |
| Annual incidence | <1 / 1 000 000 | 0.051 | Sweden | Validated |
| Annual incidence | <1 / 1 000 000 | 0.022 | Switzerland | Validated |
| Annual incidence | <1 / 1 000 000 | 0.016 | United Kingdom | Validated |
| Point prevalence | 1-9 / 1 000 000 | 0.55 | France | Validated |
| Point prevalence | 1-9 / 1 000 000 | 0.5 | Italy | Validated |
| Point prevalence | 1-9 / 1 000 000 | 0.59 | Finland | Validated |
| Point prevalence | 1-9 / 1 000 000 | 0.81 | Netherlands | Validated |
| Point prevalence | 1-9 / 1 000 000 | 0.63 | Norway | Validated |
| Point prevalence | 1-9 / 1 000 000 | 0.72 | Poland | Validated |
| Point prevalence | 1-9 / 1 000 000 | 0.63 | Spain | Validated |
| Point prevalence | 1-5 / 10 000 | 10 | Sweden | Validated |
Signs & symptoms
Clinical features (HPO)
51 HPO clinical features (Orphanet curated; top 50 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0002027 | Abdominal pain | Very frequent (80-99%) |
| HP:0003163 | Elevated urinary delta-aminolevulinic acid | Very frequent (80-99%) |
| HP:0010473 | Porphyrinuria | Very frequent (80-99%) |
| HP:0012217 | Increased urinary porphobilinogen | Very frequent (80-99%) |
| HP:0012379 | Abnormal enzyme/coenzyme activity | Very frequent (80-99%) |
| HP:0000083 | Renal insufficiency | Frequent (30-79%) |
| HP:0000822 | Hypertension | Frequent (30-79%) |
| HP:0001268 | Mental deterioration | Frequent (30-79%) |
| HP:0001649 | Tachycardia | Frequent (30-79%) |
| HP:0002017 | Nausea and vomiting | Frequent (30-79%) |
| HP:0002019 | Constipation | Frequent (30-79%) |
| HP:0003418 | Back pain | Frequent (30-79%) |
| HP:0006824 | Cranial nerve paralysis | Frequent (30-79%) |
| HP:0009763 | Limb pain | Frequent (30-79%) |
| HP:0009830 | Peripheral neuropathy | Frequent (30-79%) |
| HP:0030833 | Neck pain | Frequent (30-79%) |
| HP:0000711 | Restlessness | Occasional (5-29%) |
| HP:0000716 | Depression | Occasional (5-29%) |
| HP:0000738 | Hallucinations | Occasional (5-29%) |
| HP:0000739 | Anxiety | Occasional (5-29%) |
| HP:0001250 | Seizure | Occasional (5-29%) |
| HP:0001262 | Excessive daytime somnolence | Occasional (5-29%) |
| HP:0001289 | Confusion | Occasional (5-29%) |
| HP:0001402 | Hepatocellular carcinoma | Occasional (5-29%) |
| HP:0001945 | Fever | Occasional (5-29%) |
| HP:0002014 | Diarrhea | Occasional (5-29%) |
| HP:0002093 | Respiratory insufficiency | Occasional (5-29%) |
| HP:0002203 | Respiratory paralysis | Occasional (5-29%) |
| HP:0002354 | Memory impairment | Occasional (5-29%) |
| HP:0002460 | Distal muscle weakness | Occasional (5-29%) |
| HP:0002595 | Ileus | Occasional (5-29%) |
| HP:0002902 | Hyponatremia | Occasional (5-29%) |
| HP:0003270 | Abdominal distention | Occasional (5-29%) |
| HP:0003474 | Somatic sensory dysfunction | Occasional (5-29%) |
| HP:0004347 | Weakness of muscles of respiration | Occasional (5-29%) |
| HP:0007002 | Motor axonal neuropathy | Occasional (5-29%) |
| HP:0007024 | Pseudobulbar paralysis | Occasional (5-29%) |
| HP:0007178 | Motor polyneuropathy | Occasional (5-29%) |
| HP:0008994 | Proximal muscle weakness in lower limbs | Occasional (5-29%) |
| HP:0008997 | Proximal muscle weakness in upper limbs | Occasional (5-29%) |
| HP:0011999 | Paranoia | Occasional (5-29%) |
| HP:0040319 | Dark urine | Occasional (5-29%) |
| HP:0100785 | Insomnia | Occasional (5-29%) |
| HP:0410263 | Brain imaging abnormality | Occasional (5-29%) |
| HP:0011121 | Abnormal skin morphology | Excluded (0%) |
| HP:0000016 | Urinary retention | Very rare (<1-4%) |
| HP:0000020 | Urinary incontinence | Very rare (<1-4%) |
| HP:0000975 | Hyperhidrosis | Very rare (<1-4%) |
| HP:0001259 | Coma | Very rare (<1-4%) |
| HP:0001337 | Tremor | Very rare (<1-4%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | acute intermittent porphyria |
| Mondo ID | MONDO:0008294 |
| MeSH | D017118 |
| OMIM | 176000 |
| Orphanet | 79276 |
| DOID | DOID:3890 |
| ICD-11 | 1565229118 |
| NCIT | C84536 |
| SNOMED CT | 234422006 |
| UMLS | C0162565 |
| MedGen | 56452 |
| GARD | 0005732 |
| NORD | 729 |
| Is cancer (heuristic) | no |
Also known as: acute intermittent porphyria · AIP · HMBS deficiency · hydroxymethylbilane synthase deficiency · porphyria, acute intermittent
Data availability: 141 ClinVar variants · 4 GenCC gene-disease records · 16 cell lines.
Disease family
Classification path: disease › human disease › acute disease › acute intermittent porphyria
Related subtypes (118): encephalopathy, acute, infection-induced, seminal vesicle acute gonorrhea, acute diarrhea, acute hydrops keratoconus, acute pericementitis, purulent acute otitis media, acute otitis externa, acute eustachian salpingitis, acute cervicitis, acute gonococcal epididymo-orchitis, acute salpingitis, acute respiratory failure, acute conjunctivitis, acute laryngopharyngitis, acute orbital inflammation, acute dacryocystitis, acute sphenoidal sinusitis, acute proliferative glomerulonephritis, acute cystitis, acute tympanitis, acute closed-angle glaucoma, acute gonococcal prostatitis, acute poststreptococcal glomerulonephritis, acute diffuse glomerulonephritis, acute retrobulbar neuritis, acute frontal sinusitis, acute cholangitis, acute thyroiditis, acute maxillary sinusitis, acute kidney injury, acute transudative otitis media, acute myocarditis, subacute glomerulonephritis, acute pyelonephritis, acute urate nephropathy, acute stress disorder, acute inflammation of lacrimal passage, acute endometritis, acute cor pulmonale, acute intestinal ischemia, subacute delirium, acute laryngitis, acute myocardial infarction, acute ethmoiditis, acute dacryoadenitis, acute female pelvic peritonitis, acute quadriplegic myopathy, severe acute respiratory syndrome, acute hypotension, acute coronary syndrome, acute chest syndrome, acute pancreatitis, acute retinal necrosis syndrome, subacute bacterial endocarditis, necrotizing encephalomyelopathy, subacute, of Leigh, adult, leukemia, acute myelocytic, with polyposis coli and colon cancer, surfactant metabolism dysfunction, pulmonary, 1, myoglobinuria, acute recurrent, autosomal recessive, acute leukemia, acute insulin response, alcohol sensitivity, acute, leukemia, acute lymphocytic, susceptibility to, 1, leukemia, acute lymphocytic, susceptibility to, 2, acute infantile liver failure-cerebellar ataxia-peripheral sensory motor neuropathy syndrome, acute transverse myelitis, subacute cutaneous lupus erythematosus, acute lung injury, subacute inflammatory demyelinating polyneuropathy, Marburg acute multiple sclerosis, acute pure sensory neuropathy, autoimmune autonomic ganglionopathy, acute sensory ataxic neuropathy, acute fatty liver of pregnancy, acute neonatal citrullinemia type I, acute endophthalmitis, acute zonal occult outer retinopathy, acute annular outer retinopathy, poliomyelitis, acute generalized exanthematous pustulosis, acute opioid poisoning, acute encephalopathy with biphasic seizures and late reduced diffusion, acute tricyclic antidepressant poisoning, acute poisoning by drugs with membrane-stabilizing effect, recurrent acute pancreatitis, bilateral acute depigmentation of the iris, idiopathic acute eosinophilic pneumonia, acute ackee fruit intoxication, acute interstitial pneumonia, acute liver failure, acute adrenal insufficiency, encephalitis, acute inflammatory demyelinating polyradiculoneuropathy, acute motor and sensory axonal neuropathy, acute motor axonal neuropathy, acute graft versus host disease, acute pharyngitis, sudden hearing loss disorder, acute bronchiolitis, acute tonsillitis, acute rheumatic heart disease, acute cholinergic dysautonomia, acute mountain sickness, acute lymphoblastic leukemia congenital sporadic aniridia, acute lichenoid pityriasis, leukoencephalopathy, acute reversible, with increased urinary alpha-ketoglutarate, acute radiation syndrome, acute bilirubin encephalopathy, acute mast cell leukemia, subacute bursitis, acute papillary necrosis, acute posterior multifocal placoid pigment epitheliopathy, acute idiopathic urticaria, acute macular neuroretinopathy, acute flaccid myelitis, acute hepatitis B virus infection, acute hepatitis C virus infection, acute fibrinous and organizing pneumonia, acute transplant rejection
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
141 retrieved; paginated sample, class counts are floors:
48 pathogenic, 31 uncertain significance, 20 conflicting classifications of pathogenicity, 12 benign/likely benign, 11 pathogenic/likely pathogenic, 10 likely pathogenic, 7 benign, 2 likely benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1030659 | NM_000190.4(HMBS):c.826-2A>T | HMBS | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1070048 | NM_000190.4(HMBS):c.973C>T (p.Arg325Ter) | HMBS | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1120222 | NM_000190.4(HMBS):c.210+1G>C | HMBS | Pathogenic | criteria provided, single submitter |
| 1164095 | NM_000190.4(HMBS):c.211-1G>T | HMBS | Pathogenic | criteria provided, single submitter |
| 1443 | NM_000190.4(HMBS):c.77G>A (p.Arg26His) | HMBS | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1445 | NM_000190.4(HMBS):c.346C>T (p.Arg116Trp) | HMBS | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1446 | NM_000190.4(HMBS):c.500G>A (p.Arg167Gln) | HMBS | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1447 | NM_000190.4(HMBS):c.518G>A (p.Arg173Gln) | HMBS | Pathogenic | criteria provided, single submitter |
| 1448 | NM_000190.4(HMBS):c.463C>T (p.Gln155Ter) | HMBS | Pathogenic | no assertion criteria provided |
| 1449 | NM_000190.4(HMBS):c.446G>A (p.Arg149Gln) | HMBS | Pathogenic | no assertion criteria provided |
| 1450 | NM_000190.4(HMBS):c.734T>G (p.Leu245Arg) | HMBS | Pathogenic | no assertion criteria provided |
| 1451 | NM_000190.4(HMBS):c.900del (p.His300fs) | HMBS | Pathogenic | no assertion criteria provided |
| 1453 | NM_000190.4(HMBS):c.593G>A (p.Trp198Ter) | HMBS | Pathogenic | no assertion criteria provided |
| 1454 | NM_000190.4(HMBS):c.91G>A (p.Ala31Thr) | HMBS | Pathogenic | no assertion criteria provided |
| 1455 | NM_000190.4(HMBS):c.100C>A (p.Gln34Lys) | HMBS | Pathogenic | no assertion criteria provided |
| 1456 | NM_000190.4(HMBS):c.499C>T (p.Arg167Trp) | HMBS | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1457 | NM_000190.4(HMBS):c.500G>T (p.Arg167Leu) | HMBS | Pathogenic | no assertion criteria provided |
| 1459 | NM_000190.4(HMBS):c.174del (p.Thr59fs) | HMBS | Pathogenic | no assertion criteria provided |
| 1460 | NM_000190.4(HMBS):c.181dup (p.Asp61fs) | HMBS | Pathogenic | no assertion criteria provided |
| 1461 | NM_000190.4(HMBS):c.211-1G>A | HMBS | Pathogenic | no assertion criteria provided |
| 1464 | NM_000190.4(HMBS):c.331G>A (p.Gly111Arg) | HMBS | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1465 | NM_000190.4(HMBS):c.499-1G>A | HMBS | Pathogenic | criteria provided, single submitter |
| 1466 | NM_000190.4(HMBS):c.530T>G (p.Leu177Arg) | HMBS | Pathogenic | criteria provided, single submitter |
| 1468 | NM_000190.4(HMBS):c.730_731del (p.Leu244fs) | HMBS | Pathogenic | criteria provided, single submitter |
| 1470 | NM_000190.4(HMBS):c.734_741dup (p.Ile248fs) | HMBS | Pathogenic | no assertion criteria provided |
| 1471 | NM_000190.4(HMBS):c.748G>A (p.Glu250Lys) | HMBS | Pathogenic | no assertion criteria provided |
| 1473 | NM_000190.4(HMBS):c.755C>T (p.Ala252Val) | HMBS | Pathogenic | no assertion criteria provided |
| 1474 | NM_000190.4(HMBS):c.766C>A (p.His256Asn) | HMBS | Pathogenic | no assertion criteria provided |
| 1475 | NM_000190.4(HMBS):c.771+1G>C | HMBS | Pathogenic | no assertion criteria provided |
| 1476 | NM_000190.4(HMBS):c.913-1G>A | HMBS | Pathogenic | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 4 · Orphanet: 15 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| HMBS | Strong | Autosomal dominant | acute intermittent porphyria | 4 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| HMBS | Orphanet:79276 | Acute intermittent porphyria |
| ACO2 | Orphanet:313850 | Infantile cerebellar-retinal degeneration |
| ACO2 | Orphanet:98676 | Autosomal recessive isolated optic atrophy |
| CPOX | Orphanet:659672 | Harderoporphyria |
| CPOX | Orphanet:79273 | Hereditary coproporphyria |
| ABCB6 | Orphanet:241 | Dyschromatosis universalis hereditaria |
| ABCB6 | Orphanet:90044 | Familial pseudohyperkalemia |
| ABCB6 | Orphanet:98938 | Colobomatous microphthalmia |
| ABCB6 | Orphanet:98942 | Coloboma of choroid and retina |
| ABCB6 | Orphanet:98943 | Coloboma of eye lens |
| ABCB6 | Orphanet:98944 | Coloboma of iris |
| ABCB6 | Orphanet:98945 | Coloboma of macula |
| ABCB6 | Orphanet:98946 | Coloboma of eyelid |
| ABCB6 | Orphanet:98947 | Coloboma of optic disc |
| PPOX | Orphanet:79473 | Variegate porphyria |
Cohort genes → proteins
5 cohort genes, 5 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 5 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| HMBS | HGNC:4982 | ENSG00000256269 | P08397 | Porphobilinogen deaminase | gencc,clinvar |
| ACO2 | HGNC:118 | ENSG00000100412 | Q99798 | Aconitate hydratase, mitochondrial | clinvar |
| CPOX | HGNC:2321 | ENSG00000080819 | P36551 | Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial | clinvar |
| ABCB6 | HGNC:47 | ENSG00000115657 | Q9NP58 | ATP-binding cassette sub-family B member 6 | clinvar |
| PPOX | HGNC:9280 | ENSG00000143224 | P50336 | Protoporphyrinogen oxidase | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| HMBS | Porphobilinogen deaminase | As part of the heme biosynthetic pathway, catalyzes the sequential polymerization of four molecules of porphobilinogen to form hydroxymethylbilane, also known as preuroporphyrinogen. |
| ACO2 | Aconitate hydratase, mitochondrial | Catalyzes the isomerization of citrate to isocitrate via cis-aconitate. |
| CPOX | Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial | Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX and participates to the sixth step in the heme biosynthetic pathway. |
| ABCB6 | ATP-binding cassette sub-family B member 6 | ATP-dependent transporter that catalyzes the transport of a broad-spectrum of porphyrins from the cytoplasm to the extracellular space through the plasma membrane or into the vesicle lumen. |
| PPOX | Protoporphyrinogen oxidase | Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. |
Protein-family classification
Druggable: 5 · Difficult: 0 · Unknown: 0 · Druggable fraction: 1.0
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Enzyme (other) | 4 | 9.6× | 4e-04 |
| Transporter | 1 | 15.6× | 0.063 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| HMBS | Enzyme (other) | yes | 2.5.1.61 | HemC, Porphobilin_deaminase_N, Porphobilinogen_deaminase_C |
| ACO2 | Enzyme (other) | yes | 4.2.1.3 | AconitaseA/IPMdHydase_ssu_swvl, Acoase/IPM_deHydtase_lsu_aba, Aconitase_mito-like |
| CPOX | Enzyme (other) | yes | 1.3.3.3 | Coprogen_oxidase_aer, Coprogen_oxidase_CS, Coprogen_oxidase_aer_sf |
| ABCB6 | Transporter | yes | ABC_transporter-like_ATP-bd, AAA+_ATPase, ABC1_TM_dom | |
| PPOX | Enzyme (other) | yes | 1.3.3.4 | Amino_oxidase, Protoporphyrinogen_oxidase, FAD/NAD-bd_sf |
Expression context
Cohort genes with no expression data: 0.
5 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 5 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| trabecular bone tissue | 2 |
| bone marrow | 1 |
| bone marrow cell | 1 |
| apex of heart | 1 |
| heart right ventricle | 1 |
| left ventricle myocardium | 1 |
| C1 segment of cervical spinal cord | 1 |
| jejunal mucosa | 1 |
| left ovary | 1 |
| right hemisphere of cerebellum | 1 |
| right ovary | 1 |
| epithelium of bronchus | 1 |
| olfactory segment of nasal mucosa | 1 |
| right uterine tube | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| HMBS | 271 | ubiquitous | marker | trabecular bone tissue, bone marrow, bone marrow cell |
| ACO2 | 291 | ubiquitous | marker | heart right ventricle, apex of heart, left ventricle myocardium |
| CPOX | 268 | tissue_specific | marker | trabecular bone tissue, C1 segment of cervical spinal cord, jejunal mucosa |
| ABCB6 | 140 | ubiquitous | marker | right ovary, right hemisphere of cerebellum, left ovary |
| PPOX | 264 | ubiquitous | marker | right uterine tube, olfactory segment of nasal mucosa, epithelium of bronchus |
Protein interactions among cohort
Intra-cohort edges: 4.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| ACO2 | 4,776 |
| CPOX | 2,015 |
| PPOX | 1,525 |
| ABCB6 | 1,480 |
| HMBS | 44 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ABCB6 | CPOX | string_interaction |
| ABCB6 | PPOX | string_interaction |
| ACO2 | CPOX | string_interaction |
| CPOX | PPOX | string_interaction |
Structural data
PDB: 4 · AlphaFold-only: 1 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| ABCB6 | Q9NP58 | 16 |
| HMBS | P08397 | 11 |
| PPOX | P50336 | 3 |
| CPOX | P36551 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| ACO2 | Q99798 | 95.44 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 16. Enrichment computed across 5 evidence-associated genes (5 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Heme biosynthesis | 3 | 456.8× | 3e-07 | HMBS, CPOX, PPOX |
| Defective ABCB6 causes MCOPCB7 | 1 | 2284.0× | 0.004 | ABCB6 |
| Mitochondrial ABC transporters | 1 | 571.0× | 0.009 | ABCB6 |
| Maturation of TCA enzymes and regulation of TCA cycle | 1 | 114.2× | 0.031 | ACO2 |
| ABC transporter disorders | 1 | 87.8× | 0.031 | ABCB6 |
| Citric acid cycle (TCA cycle) | 1 | 84.6× | 0.031 | ACO2 |
| Protein localization | 1 | 38.1× | 0.059 | ACO2 |
| Mitochondrial protein import | 1 | 33.6× | 0.059 | ACO2 |
| Disorders of transmembrane transporters | 1 | 27.9× | 0.063 | ABCB6 |
| ABC-family protein mediated transport | 1 | 24.3× | 0.063 | ABCB6 |
| Mitochondrial protein degradation | 1 | 22.8× | 0.063 | ACO2 |
| Aerobic respiration and respiratory electron transport | 1 | 17.7× | 0.074 | ACO2 |
| Transport of small molecules | 1 | 5.0× | 0.226 | ABCB6 |
| Disease | 1 | 2.6× | 0.362 | ABCB6 |
| Metabolism of proteins | 1 | 2.5× | 0.362 | ACO2 |
| Metabolism | 1 | 2.3× | 0.362 | ACO2 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| obsolete protoporphyrinogen IX biosynthetic process | 3 | 1011.1× | 2e-08 | HMBS, CPOX, PPOX |
| heme B biosynthetic process | 3 | 1011.1× | 2e-08 | HMBS, CPOX, PPOX |
| heme A biosynthetic process | 3 | 919.2× | 2e-08 | HMBS, CPOX, PPOX |
| heme biosynthetic process | 3 | 361.1× | 3e-07 | HMBS, CPOX, PPOX |
| porphyrin-containing compound biosynthetic process | 2 | 1685.2× | 2e-06 | ABCB6, PPOX |
| tetrapyrrole metabolic process | 1 | 3370.4× | 0.001 | ABCB6 |
| heme transmembrane transport | 1 | 1685.2× | 0.002 | ABCB6 |
| cellular detoxification of cadmium ion | 1 | 1123.5× | 0.003 | ABCB6 |
| citrate metabolic process | 1 | 842.6× | 0.003 | ACO2 |
| porphyrin-containing compound metabolic process | 1 | 842.6× | 0.003 | ABCB6 |
| heme transport | 1 | 842.6× | 0.003 | ABCB6 |
| heme metabolic process | 1 | 674.1× | 0.003 | ABCB6 |
| response to insecticide | 1 | 561.7× | 0.004 | CPOX |
| response to methylmercury | 1 | 481.5× | 0.004 | CPOX |
| response to arsenic-containing substance | 1 | 240.7× | 0.007 | CPOX |
| intracellular copper ion homeostasis | 1 | 187.2× | 0.008 | ABCB6 |
| response to iron ion | 1 | 187.2× | 0.008 | CPOX |
| response to lead ion | 1 | 187.2× | 0.008 | CPOX |
| melanosome assembly | 1 | 177.4× | 0.008 | ABCB6 |
| tricarboxylic acid cycle | 1 | 102.1× | 0.013 | ACO2 |
| skin development | 1 | 88.7× | 0.014 | ABCB6 |
| generation of precursor metabolites and energy | 1 | 68.8× | 0.017 | ACO2 |
| intracellular iron ion homeostasis | 1 | 48.9× | 0.023 | ABCB6 |
| transmembrane transport | 1 | 33.7× | 0.032 | ABCB6 |
| brain development | 1 | 15.9× | 0.064 | ABCB6 |
| response to xenobiotic stimulus | 1 | 13.8× | 0.070 | PPOX |
Therapeutics
Drugs indicated for this disease
0 approved, 1 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Givosiran | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Hemin.
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 5
Druggability breadth: 4 of 5 evidence-associated genes (80%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| HMBS | 0 | 0 |
| ACO2 | 0 | 0 |
| CPOX | 0 | 0 |
| ABCB6 | 0 | 0 |
| PPOX | 0 | 0 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 4.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| PPOX | 5 | Binding:5 |
| HMBS | 3 | Binding:3 |
| CPOX | 3 | Binding:3 |
| ABCB6 | 3 | Functional:3 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| HMBS | 2.5.1.61 | hydroxymethylbilane synthase |
| ACO2 | 4.2.1.3 | aconitate hydratase |
| CPOX | 1.3.3.3 | coproporphyrinogen oxidase |
| PPOX | 1.3.3.4 | protoporphyrinogen oxidase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 5; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 4 | HMBS, CPOX, ABCB6, PPOX |
| D | Druggable family + AlphaFold only, no drug | 1 | ACO2 |
| E | Difficult family or no structure, no drug | 0 |
Undrugged target profiles
5 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| HMBS | 3 | — |
| ACO2 | 0 | — |
| CPOX | 3 | — |
| ABCB6 | 3 | — |
| PPOX | 5 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 15.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 7 |
| PHASE1 | 4 |
| PHASE2/PHASE3 | 1 |
| PHASE3 | 1 |
| PHASE2 | 1 |
| PHASE1/PHASE2 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT00418795 | PHASE2/PHASE3 | COMPLETED | Porphozym in the Treatment of Acute Attacks in AIP |
| NCT03338816 | PHASE3 | COMPLETED | ENVISION: A Study to Evaluate the Efficacy and Safety of Givosiran (ALN-AS1) in Patients With Acute Hepatic Porphyrias (AHP) |
| NCT02922413 | PHASE2 | TERMINATED | Panhematin for Prevention of Acute Attacks of Porphyria |
| NCT02949830 | PHASE1/PHASE2 | COMPLETED | A Study to Evaluate Long-term Safety and Clinical Activity of Givosiran (ALN-AS1) in Patient With Acute Intermittent Porphyria (AIP) |
| NCT02082860 | PHASE1 | COMPLETED | Phase I Gene Therapy Clinical Trial Using the Vector rAAV2/5-PBGD for the Treatment of Acute Intermittent Porphyria |
| NCT02452372 | PHASE1 | COMPLETED | A Phase 1 Study of Givosiran (ALN-AS1) in Patients With Acute Intermittent Porphyria (AIP) |
| NCT02943213 | PHASE1 | COMPLETED | Assessment of Intra-subject Variability in the Bioavailability of Chlorpromazine Hydrochloride |
| NCT03505853 | PHASE1 | COMPLETED | A Study to Investigate the Interaction Between Givosiran and a 5-probe Drug Cocktail in Patients With Acute Intermittent Porphyria (AIP) |
| NCT01617642 | Not specified | ACTIVE_NOT_RECRUITING | Dental Health, Diet, Inflammation and Biomarkers in Patients With Acute Intermittent Porphyria(AIP) |
| NCT02935400 | Not specified | ACTIVE_NOT_RECRUITING | Acute Porphyria Biomarkers for Disease Activity |
| NCT05502133 | Not specified | RECRUITING | Identification of Acute Intermittent Porphyria Modifying Genes |
| NCT06273644 | Not specified | RECRUITING | Clinical Research on Acute Intermittent Porphyria and the Use of Carbohydrate-Rich Diet as a Treatment |
| NCT01568554 | Not specified | COMPLETED | Clinical Diagnosis of Acute Porphyria |
| NCT02076763 | Not specified | COMPLETED | Observational Study of Acute Intermittent Porphyria Patients |
| NCT03547297 | Not specified | TERMINATED | INSIGHT-AHP: A Study to Characterize the Prevalence of Acute Hepatic Porphyria (AHP) in Patients With Clinical Presentation and History Consistent With AHP |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| CHLORPROMAZINE HYDROCHLORIDE | 4 | 1 |
| GIVOSIRAN | 3 | 4 |
| HEMIN | 3 | 2 |
| CHEMBL4303664 | 0 | 2 |
| CHEMBL5308479 | 0 | 2 |
| HEMATIN | -1 | 2 |