Agenesis of the corpus callosum with peripheral neuropathy
diseaseOn this page
Also known as ACCPNagenesis of corpus callosum with neuronopathyagenesis of corpus callosum with peripheral neuropathyagenesis of corpus callosum with polyneuropathyAndermann syndromeCharlevoix diseasecorpus callosum agenesis neuronopathycorpus callosum agenesis-neuronopathy syndromehereditary motor and sensory neuropathy with agenesis of the corpus callosumHMSN/ACCperipheral neuropathy associated with agenesis of the corpus callosum
Summary
Agenesis of the corpus callosum with peripheral neuropathy (MONDO:0000902) is a disease caused by SLC12A6 (GenCC Definitive), with 4 cohort genes.
At a glance
- Prevalence: 1-5 / 10 000 (Specific population) [Orphanet-validated]
- Causal gene: SLC12A6 (GenCC Definitive)
- Cohort genes: 4
- ClinVar variants: 475
- Phenotypes (HPO): 14
Clinical features
Epidemiology
Prevalence records
2 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Point prevalence | 1-5 / 10 000 | 47 | Specific population | Validated |
| Point prevalence | <1 / 1 000 000 | Worldwide | Not yet validated |
Signs & symptoms
Clinical features (HPO)
14 HPO clinical features (Orphanet curated; top 14 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0000252 | Microcephaly | Very frequent (80-99%) |
| HP:0001249 | Intellectual disability | Very frequent (80-99%) |
| HP:0001250 | Seizure | Very frequent (80-99%) |
| HP:0001263 | Global developmental delay | Very frequent (80-99%) |
| HP:0001274 | Agenesis of corpus callosum | Very frequent (80-99%) |
| HP:0002353 | EEG abnormality | Very frequent (80-99%) |
| HP:0004374 | Hemiplegia/hemiparesis | Very frequent (80-99%) |
| HP:0002410 | Aqueductal stenosis | Frequent (30-79%) |
| HP:0000262 | Turricephaly | Occasional (5-29%) |
| HP:0000486 | Strabismus | Occasional (5-29%) |
| HP:0000545 | Myopia | Occasional (5-29%) |
| HP:0000639 | Nystagmus | Occasional (5-29%) |
| HP:0001363 | Craniosynostosis | Occasional (5-29%) |
| HP:0007703 | Abnormality of retinal pigmentation | Occasional (5-29%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | agenesis of the corpus callosum with peripheral neuropathy |
| Mondo ID | MONDO:0000902 |
| MeSH | C536446 |
| OMIM | 218000 |
| Orphanet | 1496 |
| DOID | DOID:0060600, DOID:0090003 |
| ICD-11 | 1443432032 |
| SNOMED CT | 702439002 |
| UMLS | C0795950 |
| MedGen | 162893 |
| GARD | 0001537 |
| Is cancer (heuristic) | no |
Also known as: ACCPN · agenesis of corpus callosum with neuronopathy · agenesis of corpus callosum with peripheral neuropathy · agenesis of corpus callosum with polyneuropathy · agenesis of the corpus callosum with peripheral neuropathy · Andermann syndrome · Charlevoix disease · corpus callosum agenesis neuronopathy · corpus callosum agenesis-neuronopathy syndrome · hereditary motor and sensory neuropathy with agenesis of the corpus callosum · HMSN/ACC · peripheral neuropathy associated with agenesis of the corpus callosum
Data availability: 475 ClinVar variants · 5 GenCC gene-disease records.
Disease family
Classification path: disease › human disease › disease by body system or component › nervous system disorder › central nervous system disorder › neurodegenerative disease › inherited neurodegenerative disorder › agenesis of the corpus callosum with peripheral neuropathy
Related subtypes (81): Huntington disease and related disorders, striatonigral degeneration, angioid streaks of choroid, amyotrophic lateral sclerosis-parkinsonism-dementia complex, inherited Creutzfeldt-Jakob disease, mitochondrial DNA depletion syndrome 4a, cerebellar ataxia-hypogonadism syndrome, myoclonic cerebellar dyssynergia, cerebral sclerosis similar to Pelizaeus-Merzbacher disease, Chediak-Higashi syndrome, encephalopathy due to beta-mercaptolactate-cysteine disulfiduria, PEHO syndrome, deafness dystonia syndrome, Kennedy disease, fatal familial insomnia, Huntington disease-like 1, neuronal intranuclear inclusion disease, ataxia-telangiectasia-like disorder, radiation sensitivity/chromosome instability syndrome, autosomal dominant, Huntington disease-like 2, microphthalmia-brain atrophy syndrome, neurodegenerative syndrome due to cerebral folate transport deficiency, hereditary sensory neuropathy-deafness-dementia syndrome, infantile cerebellar-retinal degeneration, Alzheimer disease 17, hypotonia, infantile, with psychomotor retardation and characteristic facies, Alzheimer disease 18, diffuse cerebral and cerebellar atrophy - intractable seizures - progressive microcephaly syndrome, severe neurodegenerative syndrome with lipodystrophy, developmental and epileptic encephalopathy, 35, combined oxidative phosphorylation deficiency 29, neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset, encephalopathy, progressive, early-onset, with brain edema and/or leukoencephalopathy, dystonia, childhood-onset, with optic atrophy and basal ganglia abnormalities, neuronal ceroid lipofuscinosis, frontotemporal dementia with motor neuron disease, frontotemporal dementia, GM2 gangliosidosis, attenuated Chédiak-Higashi syndrome, autosomal recessive cerebral atrophy, neurodegeneration with brain iron accumulation, fatal post-viral neurodegenerative disorder, ferro-cerebro-cutaneous syndrome, PRKAR1B-related neurodegenerative dementia with intermediate filaments, ITM2B amyloidosis, corticobasal syndrome, infantile-onset axonal motor and sensory neuropathy-optic atrophy-neurodegenerative syndrome, recurrent metabolic encephalomyopathic crises-rhabdomyolysis-cardiac arrhythmia-intellectual disability syndrome, posterior cortical atrophy, progressive supranuclear palsy, leukodystrophy, hereditary spastic paraplegia, facial onset sensory and motor neuronopathy, X-linked neurodegenerative syndrome, Bertini type, X-linked neurodegenerative syndrome, Hamel type, boylan dew greco syndrome, hereditary motor neuron disease, neurodegeneration, childhood-onset, with ataxia, tremor, optic atrophy, and cognitive decline, frontotemporal dementia and/or amyotrophic lateral sclerosis, neurodegeneration, childhood-onset, with hypotonia, respiratory insufficiency, and brain imaging abnormalities, neurodegeneration with ataxia and late-onset optic atrophy, neurodegeneration, childhood-onset, with cerebellar atrophy, neurodegeneration, early-onset, with choreoathetoid movements and microcytic anemia, neurodegeneration, infantile-onset, biotin-responsive, hereditary optic atrophy, early-onset progressive diffuse brain atrophy-microcephaly-muscle weakness-optic atrophy syndrome, psychomotor regression-oculomotor apraxia-movement disorder-nephropathy syndrome, familial Alzheimer disease, neurodegeneration, childhood-onset, stress-induced, with variable ataxia and seizures, hereditary cerebellar ataxia, DCTN1-related neurodegeneration, early-childhood-onset neurodegeneration with retinitis pigmentosa, sensorineural hearing loss, and demyelinating peripheral neuropathy, TUBB4A-related neurologic disorder, neurodegeneration, childhood-onset, with progressive microcephaly, neurodegeneration, childhood-onset, with multisystem involvement due to mitochondrial dysfunction, neurodegeneration and seizures due to copper transport defect, neurodegeneration with developmental delay, early respiratory failure, myoclonic seizures, and brain abnormalities, neurodegeneration, childhood-onset, with cerebellar ataxia and cognitive decline, neurodegenerative disorder, X-linked, female-restricted, with parkinsonism and cognitive impairment, neurodegenerative disorder with cerebellar and caudate atrophy, APP-related brain and vascular amyloidosis
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
475 retrieved; paginated sample, class counts are floors:
184 uncertain significance, 118 likely pathogenic, 49 likely benign, 43 benign, 27 conflicting classifications of pathogenicity, 25 pathogenic/likely pathogenic, 17 pathogenic, 12 benign/likely benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1068924 | NM_001365088.1(SLC12A6):c.2509_2510insTC (p.Glu837fs) | LOC126862097 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3366315 | NM_001365088.1(SLC12A6):c.690+6T>A | LOC129390683 | Pathogenic | criteria provided, single submitter |
| 370396 | NM_001365088.1(SLC12A6):c.655C>T (p.Gln219Ter) | LOC129390683 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1029940 | NM_001365088.1(SLC12A6):c.2230C>T (p.Arg744Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1029941 | NM_001365088.1(SLC12A6):c.1151C>G (p.Ser384Ter) | SLC12A6 | Pathogenic | criteria provided, single submitter |
| 1072743 | NM_001365088.1(SLC12A6):c.776del (p.Ala259fs) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1075166 | NM_001365088.1(SLC12A6):c.892C>T (p.Arg298Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 136175 | NM_001365088.1(SLC12A6):c.1584_1585delinsG (p.Phe529fs) | SLC12A6 | Pathogenic | no assertion criteria provided |
| 136176 | NM_001365088.1(SLC12A6):c.2032dup (p.Tyr678fs) | SLC12A6 | Pathogenic | no assertion criteria provided |
| 136177 | NM_001365088.1(SLC12A6):c.1478_1485del (p.Phe493fs) | SLC12A6 | Pathogenic | no assertion criteria provided |
| 1388798 | NM_001365088.1(SLC12A6):c.2893dup (p.Tyr965fs) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1451911 | NM_001365088.1(SLC12A6):c.2962_2963dup (p.Glu989fs) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1452914 | NM_001365088.1(SLC12A6):c.2710G>T (p.Glu904Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 159897 | NM_001365088.1(SLC12A6):c.379G>T (p.Glu127Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1705184 | NM_001365088.1(SLC12A6):c.1950dup (p.Leu651fs) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 188972 | NM_001365088.1(SLC12A6):c.571_572dup (p.Tyr192fs) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1987661 | NM_001365088.1(SLC12A6):c.2002C>T (p.Arg668Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2678741 | NM_001365088.1(SLC12A6):c.3321del (p.Asn1107fs) | SLC12A6 | Pathogenic | criteria provided, single submitter |
| 2678744 | NM_001365088.1(SLC12A6):c.2265G>A (p.Trp755Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2678746 | NM_001365088.1(SLC12A6):c.2180dup (p.Gly727_Asp728insTer) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2678754 | NM_001365088.1(SLC12A6):c.2272C>T (p.Gln758Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2678765 | NM_001365088.1(SLC12A6):c.2736dup (p.Val913fs) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2759948 | NM_001365088.1(SLC12A6):c.1786C>T (p.Gln596Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2876293 | NM_001365088.1(SLC12A6):c.3061C>T (p.Arg1021Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 30440 | NM_001365088.1(SLC12A6):c.3400C>T (p.Arg1134Ter) | SLC12A6 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 3240465 | NM_001365088.1(SLC12A6):c.3361+1G>C | SLC12A6 | Pathogenic | criteria provided, single submitter |
| 370137 | NM_001365088.1(SLC12A6):c.2809C>T (p.Arg937Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 370139 | NM_001365088.1(SLC12A6):c.1118+1G>A | SLC12A6 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 370269 | NM_001365088.1(SLC12A6):c.298G>T (p.Glu100Ter) | SLC12A6 | Pathogenic | criteria provided, single submitter |
| 370595 | NM_001365088.1(SLC12A6):c.963C>A (p.Tyr321Ter) | SLC12A6 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 7 · Orphanet: 5 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| SLC12A6 | Definitive | Autosomal recessive | agenesis of the corpus callosum with peripheral neuropathy | 7 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| SLC12A6 | Orphanet:1496 | Corpus callosum agenesis-neuronopathy syndrome |
| CLN6 | Orphanet:700467 | Late infantile CLN6 disease |
| CLN6 | Orphanet:700472 | Juvenile CLN6 disease |
| CLN6 | Orphanet:700477 | Adult CLN6 disease |
| ATP2B2 | Orphanet:90636 | Rare autosomal recessive non-syndromic sensorineural deafness type DFNB |
Cohort genes → proteins
4 cohort genes, 4 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 4 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| SLC12A6 | HGNC:10914 | ENSG00000140199 | Q9UHW9 | Solute carrier family 12 member 6 | gencc,clinvar |
| CLN6 | HGNC:2077 | ENSG00000128973 | Q9NWW5 | Ceroid-lipofuscinosis neuronal protein 6 | clinvar |
| EMC4 | HGNC:28032 | ENSG00000128463 | Q5J8M3 | ER membrane protein complex subunit 4 | clinvar |
| ATP2B2 | HGNC:815 | ENSG00000157087 | Q01814 | Plasma membrane calcium-transporting ATPase 2 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| SLC12A6 | Solute carrier family 12 member 6 | Mediates electroneutral potassium-chloride cotransport when activated by cell swelling. |
| EMC4 | ER membrane protein complex subunit 4 | Part of the endoplasmic reticulum membrane protein complex (EMC) that enables the energy-independent insertion into endoplasmic reticulum membranes of newly synthesized membrane proteins. |
| ATP2B2 | Plasma membrane calcium-transporting ATPase 2 | ATP-driven Ca(2+) ion pump involved in the maintenance of basal intracellular Ca(2+) levels in specialized cells of cerebellar circuit and vestibular and cochlear systems. |
Protein-family classification
Druggable: 0 · Difficult: 1 · Unknown: 3 · Druggable fraction: 0.0
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Transcription factor | 1 | 2.1× | 0.404 |
| Other/Unknown | 3 | 1.3× | 0.404 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| SLC12A6 | Other/Unknown | no | KCL_cotranspt, AA-permease/SLC12A_dom, SLC12A_fam | |
| CLN6 | Other/Unknown | no | CLN6 | |
| EMC4 | Other/Unknown | no | TMEM85/Emc4 | |
| ATP2B2 | Transcription factor | no | 7.2.2.10 | P_typ_ATPase, ATPase_P-typ_cation-transptr_N, ATPase_P-typ_cation-transptr_C |
Expression context
Cohort genes with no expression data: 0.
4 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 4 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| blood | 1 |
| esophagus squamous epithelium | 1 |
| secondary oocyte | 1 |
| bone marrow | 1 |
| leukocyte | 1 |
| monocyte | 1 |
| calcaneal tendon | 1 |
| left ventricle myocardium | 1 |
| upper arm skin | 1 |
| Brodmann (1909) area 46 | 1 |
| endothelial cell | 1 |
| lateral nuclear group of thalamus | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| SLC12A6 | 274 | ubiquitous | marker | esophagus squamous epithelium, blood, secondary oocyte |
| CLN6 | 139 | ubiquitous | marker | monocyte, leukocyte, bone marrow |
| EMC4 | 260 | ubiquitous | marker | left ventricle myocardium, calcaneal tendon, upper arm skin |
| ATP2B2 | 203 | tissue_specific | marker | lateral nuclear group of thalamus, endothelial cell, Brodmann (1909) area 46 |
Protein interactions among cohort
Intra-cohort edges: 0.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| ATP2B2 | 3,932 |
| EMC4 | 2,120 |
| SLC12A6 | 1,463 |
| CLN6 | 1,107 |
Structural data
PDB: 2 · AlphaFold-only: 2 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| EMC4 | Q5J8M3 | 9 |
| SLC12A6 | Q9UHW9 | 8 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| CLN6 | Q9NWW5 | 85.86 |
| ATP2B2 | Q01814 | 73.83 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 20. Enrichment computed across 4 evidence-associated genes (3 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 3 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Defective SLC12A6 causes agenesis of the corpus callosum, with peripheral neuropathy (ACCPN) | 1 | 3806.7× | 0.005 | SLC12A6 |
| Cation-coupled Chloride cotransporters | 1 | 543.8× | 0.018 | SLC12A6 |
| Reduction of cytosolic Ca++ levels | 1 | 317.2× | 0.018 | ATP2B2 |
| Platelet calcium homeostasis | 1 | 237.9× | 0.018 | ATP2B2 |
| Transport of small molecules | 2 | 16.8× | 0.018 | SLC12A6, ATP2B2 |
| Platelet homeostasis | 1 | 92.8× | 0.027 | ATP2B2 |
| Dengue Virus Attachment and Entry | 1 | 86.5× | 0.027 | EMC4 |
| Ion transport by P-type ATPases | 1 | 69.2× | 0.027 | ATP2B2 |
| Ion homeostasis | 1 | 68.0× | 0.027 | ATP2B2 |
| SLC transporter disorders | 1 | 68.0× | 0.027 | SLC12A6 |
| Sensory processing of sound by outer hair cells of the cochlea | 1 | 68.0× | 0.027 | ATP2B2 |
| Sensory processing of sound by inner hair cells of the cochlea | 1 | 54.4× | 0.030 | ATP2B2 |
| Disorders of transmembrane transporters | 1 | 46.4× | 0.033 | SLC12A6 |
| R-HSA-425393 | 1 | 43.3× | 0.033 | SLC12A6 |
| Cardiac conduction | 1 | 36.2× | 0.036 | ATP2B2 |
| Ion channel transport | 1 | 32.0× | 0.039 | ATP2B2 |
| Muscle contraction | 1 | 25.7× | 0.045 | ATP2B2 |
| SLC-mediated transmembrane transport | 1 | 19.7× | 0.055 | SLC12A6 |
| Hemostasis | 1 | 12.0× | 0.085 | ATP2B2 |
| Disease | 1 | 4.4× | 0.212 | SLC12A6 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| cellular hypotonic salinity response | 1 | 1404.3× | 0.012 | SLC12A6 |
| ganglioside metabolic process | 1 | 1053.2× | 0.012 | CLN6 |
| glycosaminoglycan metabolic process | 1 | 601.9× | 0.012 | CLN6 |
| locomotion involved in locomotory behavior | 1 | 601.9× | 0.012 | CLN6 |
| protein insertion into ER membrane by stop-transfer membrane-anchor sequence | 1 | 383.0× | 0.012 | EMC4 |
| chloride ion homeostasis | 1 | 383.0× | 0.012 | SLC12A6 |
| cellular hypotonic response | 1 | 351.1× | 0.012 | SLC12A6 |
| tail-anchored membrane protein insertion into ER membrane | 1 | 234.1× | 0.014 | EMC4 |
| regulation of cardiac conduction | 1 | 210.7× | 0.014 | ATP2B2 |
| positive regulation of proteolysis | 1 | 200.6× | 0.014 | CLN6 |
| potassium ion homeostasis | 1 | 191.5× | 0.014 | SLC12A6 |
| lysosomal lumen acidification | 1 | 168.5× | 0.015 | CLN6 |
| cell volume homeostasis | 1 | 150.5× | 0.015 | SLC12A6 |
| regulation of cytosolic calcium ion concentration | 1 | 95.8× | 0.022 | ATP2B2 |
| potassium ion import across plasma membrane | 1 | 91.6× | 0.022 | SLC12A6 |
| lysosome organization | 1 | 76.6× | 0.024 | CLN6 |
| cellular response to glucose stimulus | 1 | 66.9× | 0.026 | SLC12A6 |
| protein catabolic process | 1 | 59.3× | 0.026 | CLN6 |
| chloride transmembrane transport | 1 | 59.3× | 0.026 | SLC12A6 |
| monoatomic ion transmembrane transport | 1 | 52.0× | 0.029 | ATP2B2 |
| cholesterol metabolic process | 1 | 49.0× | 0.029 | CLN6 |
| calcium ion transport | 1 | 45.3× | 0.030 | ATP2B2 |
| monoatomic ion transport | 1 | 39.0× | 0.033 | SLC12A6 |
| potassium ion transmembrane transport | 1 | 34.0× | 0.036 | SLC12A6 |
| sensory perception of sound | 1 | 25.2× | 0.045 | ATP2B2 |
| neuron differentiation | 1 | 25.1× | 0.045 | ATP2B2 |
| visual perception | 1 | 19.9× | 0.054 | CLN6 |
| chemical synaptic transmission | 1 | 19.3× | 0.054 | SLC12A6 |
| angiogenesis | 1 | 15.6× | 0.065 | SLC12A6 |
| apoptotic process | 1 | 7.2× | 0.132 | EMC4 |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 4
Druggability breadth: 1 of 4 evidence-associated genes (25%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| SLC12A6 | 0 | 0 |
| CLN6 | 0 | 0 |
| EMC4 | 0 | 0 |
| ATP2B2 | 0 | 0 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 1.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| CLN6 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| ATP2B2 | 7.2.2.10 | P-type Ca2+ transporter |
Pharmacogenomics
Cohort genes with a PharmGKB record: 4; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 4 | SLC12A6, CLN6, EMC4, ATP2B2 |
Undrugged target profiles
4 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| SLC12A6 | 0 | — |
| CLN6 | 1 | — |
| EMC4 | 0 | — |
| ATP2B2 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.