ALG12-congenital disorder of glycosylation
diseaseOn this page
Also known as ALG12-CDGALG12-CDG (CDG-Ig)carbohydrate deficient glycoprotein syndrome type IgCDG 1GCDG syndrome type IgCDG-IgCDG1GCDGIgcongenital disorder of glycosylation type 1gcongenital disorder of glycosylation type Igcongenital disorder of glycosylation, type Igmannosyltransferase 8 deficiency
Summary
ALG12-congenital disorder of glycosylation (MONDO:0011783) is a disease caused by ALG12 (GenCC Definitive), with 5 cohort genes.
At a glance
- Prevalence: <1 / 1 000 000 (Worldwide) [Orphanet-validated]
- Causal gene: ALG12 (GenCC Definitive)
- Cohort genes: 5
- ClinVar variants: 520
- Phenotypes (HPO): 93
Clinical features
Epidemiology
Prevalence records
2 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Cases/families | 11 | Worldwide | Validated | |
| Point prevalence | <1 / 1 000 000 | Worldwide | Validated |
Signs & symptoms
Clinical features (HPO)
93 HPO clinical features (Orphanet curated; top 50 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0012379 | Abnormal enzyme/coenzyme activity | Obligate (100%) |
| HP:0000119 | Abnormality of the genitourinary system | Very frequent (80-99%) |
| HP:0003256 | Abnormality of the coagulation cascade | Very frequent (80-99%) |
| HP:0000253 | Progressive microcephaly | Frequent (30-79%) |
| HP:0000750 | Delayed speech and language development | Frequent (30-79%) |
| HP:0000759 | Abnormal peripheral nervous system morphology | Frequent (30-79%) |
| HP:0001249 | Intellectual disability | Frequent (30-79%) |
| HP:0001252 | Hypotonia | Frequent (30-79%) |
| HP:0001508 | Failure to thrive | Frequent (30-79%) |
| HP:0001929 | Reduced factor XI activity | Frequent (30-79%) |
| HP:0002011 | Morphological central nervous system abnormality | Frequent (30-79%) |
| HP:0002194 | Delayed gross motor development | Frequent (30-79%) |
| HP:0002205 | Recurrent respiratory infections | Frequent (30-79%) |
| HP:0002257 | Chronic rhinitis | Frequent (30-79%) |
| HP:0003645 | Prolonged partial thromboplastin time | Frequent (30-79%) |
| HP:0004855 | Reduced protein S activity | Frequent (30-79%) |
| HP:0005543 | Reduced protein C activity | Frequent (30-79%) |
| HP:0006532 | Recurrent pneumonia | Frequent (30-79%) |
| HP:0008151 | Prolonged prothrombin time | Frequent (30-79%) |
| HP:0010976 | Decreased total B cell count | Frequent (30-79%) |
| HP:0011968 | Feeding difficulties | Frequent (30-79%) |
| HP:0040246 | Reduced antithrombin antigen | Frequent (30-79%) |
| HP:0100776 | Recurrent pharyngitis | Frequent (30-79%) |
| HP:0410018 | Recurrent ear infections | Frequent (30-79%) |
| HP:0410242 | Abnormal IgG level | Frequent (30-79%) |
| HP:0001622 | Premature birth | Occasional (5-29%) |
| HP:0001762 | Talipes equinovarus | Occasional (5-29%) |
| HP:0001792 | Small nail | Occasional (5-29%) |
| HP:0001852 | Sandal gap | Occasional (5-29%) |
| HP:0001873 | Thrombocytopenia | Occasional (5-29%) |
| HP:0001988 | Recurrent hypoglycemia | Occasional (5-29%) |
| HP:0001999 | Abnormal facial shape | Occasional (5-29%) |
| HP:0002020 | Gastroesophageal reflux | Occasional (5-29%) |
| HP:0002079 | Hypoplasia of the corpus callosum | Occasional (5-29%) |
| HP:0002119 | Ventriculomegaly | Occasional (5-29%) |
| HP:0002162 | Low posterior hairline | Occasional (5-29%) |
| HP:0002389 | Cavum septum pellucidum | Occasional (5-29%) |
| HP:0002650 | Scoliosis | Occasional (5-29%) |
| HP:0002910 | Elevated circulating hepatic transaminase concentration | Occasional (5-29%) |
| HP:0003026 | Short long bone | Occasional (5-29%) |
| HP:0003049 | Ulnar deviation of the wrist | Occasional (5-29%) |
| HP:0003073 | Hypoalbuminemia | Occasional (5-29%) |
| HP:0003146 | Hypocholesterolemia | Occasional (5-29%) |
| HP:0004209 | Clinodactyly of the 5th finger | Occasional (5-29%) |
| HP:0009623 | Proximal placement of thumb | Occasional (5-29%) |
| HP:0010557 | Overlapping fingers | Occasional (5-29%) |
| HP:0011327 | Posterior plagiocephaly | Occasional (5-29%) |
| HP:0011344 | Severe global developmental delay | Occasional (5-29%) |
| HP:0011471 | Gastrostomy tube feeding in infancy | Occasional (5-29%) |
| HP:0011800 | Midface retrusion | Occasional (5-29%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | ALG12-congenital disorder of glycosylation |
| Mondo ID | MONDO:0011783 |
| MeSH | C535745 |
| OMIM | 607143 |
| Orphanet | 79324 |
| DOID | DOID:0080559 |
| NCIT | C126873 |
| SNOMED CT | 711155008 |
| UMLS | C2931001 |
| MedGen | 443954 |
| GARD | 0009833 |
| Is cancer (heuristic) | no |
Also known as: ALG12-CDG · ALG12-CDG (CDG-Ig) · ALG12-congenital disorder of glycosylation · carbohydrate deficient glycoprotein syndrome type Ig · CDG 1G · CDG syndrome type Ig · CDG-Ig · CDG1G · CDGIg · congenital disorder of glycosylation type 1g · congenital disorder of glycosylation type Ig · congenital disorder of glycosylation, type Ig · mannosyltransferase 8 deficiency
Data availability: 520 ClinVar variants · 5 GenCC gene-disease records · 2 cell lines.
Disease family
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › inborn errors of metabolism › congenital disorder of glycosylation › congenital disorder of glycosylation type I › ALG12-congenital disorder of glycosylation
Related subtypes (27): PMM2-congenital disorder of glycosylation, developmental and epileptic encephalopathy, 36, SSR4-congenital disorder of glycosylation, ALG3-congenital disorder of glycosylation, MPI-congenital disorder of glycosylation, ALG6-congenital disorder of glycosylation 1C, ALG2-congenital disorder of glycosylation, DPAGT1-congenital disorder of glycosylation, ALG8-congenital disorder of glycosylation, ALG1-congenital disorder of glycosylation, ALG9-congenital disorder of glycosylation, congenital disorder of glycosylation type 1E, MPDU1-congenital disorder of glycosylation, DK1-congenital disorder of glycosylation, RFT1-congenital disorder of glycosylation, SRD5A3-congenital disorder of glycosylation, DPM3-congenital disorder of glycosylation, ALG11-congenital disorder of glycosylation, DDOST-congenital disorder of glycosylation, PGM1-congenital disorder of glycosylation, congenital muscular dystrophy with intellectual disability and severe epilepsy, STT3A-congenital disorder of glycosylation, STT3B-congenital disorder of glycosylation, developmental and epileptic encephalopathy, 50, congenital disorder of glycosylation, type IAA, congenital disorder of glycosylation, type ICC, SSR3-CDG
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
520 retrieved; paginated sample, class counts are floors:
225 likely benign, 193 uncertain significance, 32 conflicting classifications of pathogenicity, 24 pathogenic, 19 benign, 13 likely pathogenic, 7 pathogenic/likely pathogenic, 7 benign/likely benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 4724 | NM_019109.5(ALG1):c.773C>T (p.Ser258Leu) | ALG1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1069034 | NM_024105.4(ALG12):c.1156dup (p.Gln386fs) | ALG12 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1383200 | NM_024105.4(ALG12):c.522G>A (p.Trp174Ter) | ALG12 | Pathogenic | criteria provided, single submitter |
| 1440773 | NM_024105.4(ALG12):c.789C>A (p.Tyr263Ter) | ALG12 | Pathogenic | criteria provided, single submitter |
| 1448154 | NM_024105.4(ALG12):c.502G>T (p.Glu168Ter) | ALG12 | Pathogenic | criteria provided, single submitter |
| 1456464 | NM_024105.4(ALG12):c.688dup (p.Tyr230fs) | ALG12 | Pathogenic | criteria provided, single submitter |
| 2073899 | NM_024105.4(ALG12):c.336G>A (p.Trp112Ter) | ALG12 | Pathogenic | criteria provided, single submitter |
| 2090231 | NM_024105.4(ALG12):c.1129C>T (p.Gln377Ter) | ALG12 | Pathogenic | criteria provided, single submitter |
| 2103386 | NM_024105.4(ALG12):c.424_428delinsCAGTTCCAC (p.Phe142fs) | ALG12 | Pathogenic | criteria provided, single submitter |
| 2138458 | NM_024105.4(ALG12):c.30del (p.Leu12fs) | ALG12 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2426800 | NC_000022.10:g.(?50297486)(50307413_?)del | ALG12 | Pathogenic | criteria provided, single submitter |
| 242854 | NM_024105.4(ALG12):c.1001del (p.Asn334fs) | ALG12 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 242855 | NM_024105.4(ALG12):c.117del (p.Gln40fs) | ALG12 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2626751 | NM_024105.4(ALG12):c.768+1dup | ALG12 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2697267 | NM_024105.4(ALG12):c.698_699del (p.Arg233fs) | ALG12 | Pathogenic | criteria provided, single submitter |
| 2734803 | NM_024105.4(ALG12):c.731G>A (p.Trp244Ter) | ALG12 | Pathogenic | criteria provided, single submitter |
| 2824299 | NM_024105.4(ALG12):c.160C>T (p.Gln54Ter) | ALG12 | Pathogenic | criteria provided, single submitter |
| 2839616 | NM_024105.4(ALG12):c.21_33dup (p.Leu12fs) | ALG12 | Pathogenic | criteria provided, single submitter |
| 3358165 | NM_024105.4(ALG12):c.604C>T (p.Arg202Ter) | ALG12 | Pathogenic | criteria provided, single submitter |
| 3434 | NM_024105.4(ALG12):c.200C>T (p.Thr67Met) | ALG12 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3435 | NM_024105.4(ALG12):c.437G>A (p.Arg146Gln) | ALG12 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3437 | NM_024105.4(ALG12):c.473T>C (p.Leu158Pro) | ALG12 | Pathogenic | no assertion criteria provided |
| 3438 | NM_024105.4(ALG12):c.1242C>G (p.Tyr414Ter) | ALG12 | Pathogenic | no assertion criteria provided |
| 3617623 | NM_024105.4(ALG12):c.755del (p.Ser252fs) | ALG12 | Pathogenic | criteria provided, single submitter |
| 3688618 | NM_024105.4(ALG12):c.1015_1016del (p.Trp339fs) | ALG12 | Pathogenic | criteria provided, single submitter |
| 4697444 | NM_024105.4(ALG12):c.861del (p.Thr288fs) | ALG12 | Pathogenic | criteria provided, single submitter |
| 4767896 | NM_024105.4(ALG12):c.904_908del (p.Tyr302fs) | ALG12 | Pathogenic | criteria provided, single submitter |
| 560937 | NM_024105.4(ALG12):c.930_931del (p.Arg311fs) | ALG12 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 987881 | NM_024105.4(ALG12):c.165C>A (p.Tyr55Ter) | ALG12 | Pathogenic | criteria provided, single submitter |
| 1031734 | NM_007347.5(AP4E1):c.3313C>T (p.Arg1105Ter) | AP4E1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 5 · Orphanet: 3 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| ALG12 | Definitive | Autosomal recessive | ALG12-congenital disorder of glycosylation | 5 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| ALG12 | Orphanet:79324 | ALG12-CDG |
| ALG1 | Orphanet:79327 | ALG1-CDG |
| AP4E1 | Orphanet:280763 | Severe intellectual disability and progressive spastic paraplegia |
Cohort genes → proteins
5 cohort genes, 5 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 5 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| ALG12 | HGNC:19358 | ENSG00000182858 | Q9BV10 | Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase | gencc,clinvar |
| BRD1 | HGNC:1102 | ENSG00000100425 | O95696 | Bromodomain-containing protein 1 | clinvar |
| ALG1 | HGNC:18294 | ENSG00000033011 | Q9BT22 | Chitobiosyldiphosphodolichol beta-mannosyltransferase | clinvar |
| AP4E1 | HGNC:573 | ENSG00000081014 | Q9UPM8 | AP-4 complex subunit epsilon-1 | clinvar |
| PLXNB2 | HGNC:9104 | ENSG00000196576 | O15031 | Plexin-B2 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| ALG12 | Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase | Mannosyltransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. |
| BRD1 | Bromodomain-containing protein 1 | Scaffold subunit of various histone acetyltransferase (HAT) complexes, such as the MOZ/MORF and HBO1 complexes, that acts as a regulator of hematopoiesis. |
| ALG1 | Chitobiosyldiphosphodolichol beta-mannosyltransferase | Mannosyltransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. |
| AP4E1 | AP-4 complex subunit epsilon-1 | Component of the adaptor protein complex 4 (AP-4). |
| PLXNB2 | Plexin-B2 | Cell surface receptor for SEMA4C, SEMA4D and SEMA4G that plays an important role in cell-cell signaling. |
Protein-family classification
Druggable: 3 · Difficult: 1 · Unknown: 1 · Druggable fraction: 0.6
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Enzyme (other) | 2 | 4.8× | 0.235 |
| Antibody/Immunoglobulin | 1 | 5.8× | 0.320 |
| Transcription factor | 1 | 1.6× | 0.634 |
| Other/Unknown | 1 | 0.4× | 0.983 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| ALG12 | Enzyme (other) | yes | 2.4.1.260 | GPI_mannosylTrfase |
| BRD1 | Transcription factor | no | PWWP_dom, Bromodomain, Znf_PHD | |
| ALG1 | Enzyme (other) | yes | 2.4.1.142 | Glyco_trans_1, ALG1-like |
| AP4E1 | Other/Unknown | no | Clathrin/coatomer_adapt-like_N, ARM-like, ARM-type_fold | |
| PLXNB2 | Antibody/Immunoglobulin | yes | Semap_dom, Plexin_repeat, IPT_dom |
Expression context
Cohort genes with no expression data: 0.
4 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 5 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| stromal cell of endometrium | 2 |
| buccal mucosa cell | 2 |
| left lobe of thyroid gland | 1 |
| right lobe of thyroid gland | 1 |
| oocyte | 1 |
| paraflocculus | 1 |
| secondary oocyte | 1 |
| body of pancreas | 1 |
| esophagus squamous epithelium | 1 |
| gingival epithelium | 1 |
| lower esophagus mucosa | 1 |
| metanephros cortex | 1 |
| right uterine tube | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| ALG12 | 217 | ubiquitous | marker | right lobe of thyroid gland, stromal cell of endometrium, left lobe of thyroid gland |
| BRD1 | 289 | ubiquitous | marker | oocyte, secondary oocyte, paraflocculus |
| ALG1 | 185 | ubiquitous | marker | stromal cell of endometrium, buccal mucosa cell, body of pancreas |
| AP4E1 | 262 | ubiquitous | yes | gingival epithelium, esophagus squamous epithelium, buccal mucosa cell |
| PLXNB2 | 276 | ubiquitous | marker | right uterine tube, metanephros cortex, lower esophagus mucosa |
Protein interactions among cohort
Intra-cohort edges: 1.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| BRD1 | 2,359 |
| ALG1 | 2,187 |
| AP4E1 | 2,108 |
| PLXNB2 | 1,606 |
| ALG12 | 1,385 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ALG1 | ALG12 | string_interaction |
Structural data
PDB: 3 · AlphaFold-only: 2 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| BRD1 | O95696 | 318 |
| AP4E1 | Q9UPM8 | 4 |
| PLXNB2 | O15031 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| ALG12 | Q9BV10 | 93.26 |
| ALG1 | Q9BT22 | 93.24 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 24. Enrichment computed across 5 evidence-associated genes (4 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Diseases associated with N-glycosylation of proteins | 2 | 317.2× | 3e-04 | ALG12, ALG1 |
| Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein | 2 | 103.8× | 0.002 | ALG12, ALG1 |
| Defective ALG1 causes CDG-1k | 1 | 2855.0× | 0.002 | ALG1 |
| Defective ALG12 causes CDG-1g | 1 | 2855.0× | 0.002 | ALG12 |
| Diseases of glycosylation | 2 | 65.6× | 0.002 | ALG12, ALG1 |
| Diseases of metabolism | 2 | 40.2× | 0.004 | ALG12, ALG1 |
| Asparagine N-linked glycosylation | 2 | 30.1× | 0.006 | ALG12, ALG1 |
| Regulation of TP53 Activity through Acetylation | 1 | 114.2× | 0.026 | BRD1 |
| Lysosome Vesicle Biogenesis | 1 | 81.6× | 0.033 | AP4E1 |
| trans-Golgi Network Vesicle Budding | 1 | 63.4× | 0.034 | AP4E1 |
| Post-translational protein modification | 2 | 9.6× | 0.034 | ALG12, ALG1 |
| Golgi Associated Vesicle Biogenesis | 1 | 50.1× | 0.040 | AP4E1 |
| Regulation of TP53 Activity | 1 | 33.2× | 0.054 | BRD1 |
| Disease | 2 | 6.5× | 0.054 | ALG12, ALG1 |
| Metabolism of proteins | 2 | 6.2× | 0.056 | ALG12, ALG1 |
| Chromatin organization | 1 | 20.4× | 0.070 | BRD1 |
| HATs acetylate histones | 1 | 19.8× | 0.070 | BRD1 |
| Chromatin modifying enzymes | 1 | 18.1× | 0.072 | BRD1 |
| Transcriptional Regulation by TP53 | 1 | 15.5× | 0.079 | BRD1 |
| Membrane Trafficking | 1 | 9.3× | 0.124 | AP4E1 |
| Vesicle-mediated transport | 1 | 8.7× | 0.126 | AP4E1 |
| RNA Polymerase II Transcription | 1 | 5.6× | 0.181 | BRD1 |
| Gene expression (Transcription) | 1 | 4.5× | 0.215 | BRD1 |
| Generic Transcription Pathway | 1 | 3.8× | 0.240 | BRD1 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| dolichol-linked oligosaccharide biosynthetic process | 2 | 337.0× | 4e-04 | ALG12, ALG1 |
| protein N-linked glycosylation | 2 | 105.3× | 0.002 | ALG12, ALG1 |
| regulation of developmental process | 1 | 481.5× | 0.023 | BRD1 |
| regulation of hemopoiesis | 1 | 306.4× | 0.024 | BRD1 |
| excitatory synapse assembly | 1 | 259.3× | 0.024 | PLXNB2 |
| regulation of protein phosphorylation | 1 | 224.7× | 0.024 | PLXNB2 |
| erythrocyte maturation | 1 | 168.5× | 0.025 | BRD1 |
| response to immobilization stress | 1 | 146.5× | 0.025 | BRD1 |
| response to electrical stimulus | 1 | 129.6× | 0.025 | BRD1 |
| regulation of neuron migration | 1 | 124.8× | 0.025 | PLXNB2 |
| positive regulation of axonogenesis | 1 | 116.2× | 0.025 | PLXNB2 |
| regulation of GTPase activity | 1 | 102.1× | 0.025 | PLXNB2 |
| positive regulation of erythrocyte differentiation | 1 | 102.1× | 0.025 | BRD1 |
| semaphorin-plexin signaling pathway | 1 | 80.2× | 0.026 | PLXNB2 |
| negative regulation of cell adhesion | 1 | 76.6× | 0.026 | PLXNB2 |
| protein targeting | 1 | 73.3× | 0.026 | AP4E1 |
| neuroblast proliferation | 1 | 73.3× | 0.026 | PLXNB2 |
| synapse assembly | 1 | 46.2× | 0.037 | PLXNB2 |
| positive regulation of translation | 1 | 45.5× | 0.037 | PLXNB2 |
| receptor-mediated endocytosis | 1 | 44.4× | 0.037 | PLXNB2 |
| neural tube closure | 1 | 37.5× | 0.042 | PLXNB2 |
| regulation of cell migration | 1 | 31.5× | 0.047 | PLXNB2 |
| homophilic cell-cell adhesion | 1 | 28.1× | 0.049 | PLXNB2 |
| positive regulation of neuron projection development | 1 | 27.4× | 0.049 | PLXNB2 |
| regulation of cell shape | 1 | 24.6× | 0.053 | PLXNB2 |
| intracellular protein localization | 1 | 20.9× | 0.058 | AP4E1 |
| protein folding | 1 | 20.7× | 0.058 | ALG12 |
| vesicle-mediated transport | 1 | 19.3× | 0.060 | AP4E1 |
| brain development | 1 | 15.9× | 0.070 | PLXNB2 |
| chromatin remodeling | 1 | 14.6× | 0.073 | BRD1 |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 5
Druggability breadth: 2 of 5 evidence-associated genes (40%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| ALG12 | 0 | 0 |
| BRD1 | 0 | 0 |
| ALG1 | 0 | 0 |
| AP4E1 | 0 | 0 |
| PLXNB2 | 0 | 0 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 2.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| BRD1 | 121 | Binding:118, Functional:3 |
| ALG1 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| ALG12 | 2.4.1.260 | dolichyl-P-Man:Man7GlcNAc2-PP-dolichol alpha-1,6-mannosyltransferase |
| ALG1 | 2.4.1.142 | chitobiosyldiphosphodolichol beta-mannosyltransferase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| BRD1 | 121 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 5; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 1 | PLXNB2 |
| D | Druggable family + AlphaFold only, no drug | 2 | ALG12, ALG1 |
| E | Difficult family or no structure, no drug | 2 | BRD1, AP4E1 |
Undrugged target profiles
5 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| BRD1 | 121 | — |
| ALG12 | 0 | — |
| ALG1 | 1 | — |
| AP4E1 | 0 | — |
| PLXNB2 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.