Asthma

disease
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Also known as chronic obstructive asthmachronic obstructive asthma with acute exacerbationchronic obstructive asthma with status asthmaticusexercise induced asthmaexercise-induced asthma

Summary

Asthma (MONDO:0004979) is a disease (an umbrella term covering 8 Mondo subtypes) with 75 cohort genes (3,219 GWAS associations across 280 studies) and 3,826 clinical trials. The dominant Reactome pathway is TNFs bind their physiological receptors (8 cohort genes). Top therapeutic interventions include montelukast, albuterol, and salmeterol.

At a glance

  • Umbrella term: 8 Mondo subtypes
  • Cohort genes: 75
  • GWAS associations: 3,219
  • ClinVar variants: 12
  • Clinical trials: 3,826

Clinical features

No curated clinical features (Orphanet) for this disease.

Identifiers

Disease identifiers

FieldValue
Canonical nameasthma
Mondo IDMONDO:0004979
MeSHD001249
DOIDDOID:2841
ICD-10-CMJ45
ICD-111656445230
NCITC28397
SNOMED CT31387002
UMLSC0004096
MedGen2109
Is cancer (heuristic)no

Also known as: chronic obstructive asthma · chronic obstructive asthma with acute exacerbation · chronic obstructive asthma with status asthmaticus · exercise induced asthma · exercise-induced asthma

Data availability: 12 ClinVar variants · 3,219 GWAS associations (280 studies) · 1 HPO phenotype · 1 cell line.

Disease family

An umbrella term covering 8 Mondo subtypes.

Classification path: disease › human disease › disease by body system or component › respiratory system disorderlower respiratory tract disorderbronchial disorderasthma

Related subtypes (5): bronchial neoplasm, bronchitis, bronchiectasis, non-syndromic bridging bronchus, non-syndromic congenital bronchial atresia

Subtypes (8): cough variant asthma, intrinsic asthma, status asthmaticus, allergic asthma, childhood onset asthma, occupational asthma, chronic asthma, acute asthma

Genetics & variants

GWAS landscape

3,219 GWAS associations across 280 studies. Top hits map to 16 distinct genes (as reported by GWAS).

Top associations by p-value

rsIDp-valueGeneRisk alleleOdds ratio
rs283834542e-116HLA-DQA1T1.18
rs77495438e-115HLA-DQB2 - HLA-DOB?
rs92731234e-105HLA-DQA1A1.19
rs92766437e-105HLA-DQB2 - HLA-DOB?
rs287987056e-104HLA-DQA1 - HLA-DQB1A1.18
rs728236411e-78IL18R1, IL1RL1T1.16
rs79363121e-77EMSY - LINC02757T1.11
rs9929693e-72GTF3AP1 - IL33A1.15
rs602275655e-71CFAP144P2 - IL1RL1G1.2
rs78482159e-71GTF3AP1 - IL33T1.15
rs284079507e-70HLA-DQA1 - HLA-DQB1C1.12
rs47953997e-65GSDMBT2.29
rs286904492e-64TLR10 - TLR1C1.12
rs116551981e-63ZPBP2?1.18
rs10087232e-62GSDMBG1.11
rs112367976e-62EMSY - LINC02757A1.12
rs14386737e-62WDR36 - RPS3AP21C1.09
rs24284942e-60HLA-BA1.12
rs342902856e-58D2HGDHG1.11
rs99011464e-57ZPBP2 - GSDMBG
rs124708642e-56CFAP144P2 - IL1RL1A1.12
rs18612451e-52IL18R1, IL1RL1C1.12
rs18372531e-51BCLAF1P1 - TSLPC1.11
rs14447821e-48LINC02676 - LINC00709G1.1
rs17755542e-46LINC02676 - LINC00709A1.1
rs727434613e-46SMAD3A1.12
rs129356576e-45CLEC16AG1.09
rs68812703e-44IL7RC1.09
rs625573123e-43RANBP6 - GTF3AP1C1.13
rs556460919e-42EMSY - LINC02757A1.24

Top studies (by case count)

StudyLead authorYearCasesControlsTitle
GCST007798Ferreira MAR201940,544300,671Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.
GCST003987Pickrell JK201628,399128,843Detection and interpretation of shared genetic influences on 42 human traits.
GCST007563Zhu Z201825,68576,768A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.
GCST005212Demenais F201719,954107,715Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.
GCST006862Demenais F201719,954107,715Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.
GCST007596Dahlin A201816,27438,269Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.
GCST007562Zhu Z201814,08576,768A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.
GCST007564Zhu Z201814,08576,768A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.
GCST001226Ferreira MA201112,47519,967Identification of IL6R and chromosome 11q13.5 as risk loci for asthma.
GCST000804Moffatt MF201010,36516,110A large-scale, consortium-based genomewide association study of asthma.

Variant details and genetic-evidence tiers

Tier distribution (top 50 variants)

TierVariants
Tier 1: coding1
Tier 2: splice/UTR2
Tier 3: regulatory4
Tier 4: intronic/intergenic43

MAF distribution

BucketVariants
common (>=0.05)47
low_freq (0.01-0.05)1
rare (<0.01)0
unknown2

Functional consequences

ConsequenceCount
intron_variant23
intergenic_variant20
regulatory_region_variant4
3_prime_UTR_variant2
missense_variant1

Top variants

rsIDChrPosAllelesMAFConsequenceGenep-valueTier
rs28383454632641593G>C,T0.05intron_variantHLA-DQA12e-116Tier 4: intronic/intergenic
rs7749543632783639G>A,T0.05intergenic_variantHLA-DQB2 - HLA-DOB8e-115Tier 4: intronic/intergenic
rs9273123632644956G>A0.05intergenic_variantHLA-DQA14e-105Tier 4: intronic/intergenic
rs9276643632777057G>A,C,T0.05intergenic_variantHLA-DQB2 - HLA-DOB7e-105Tier 4: intronic/intergenic
rs28798705632650032A>G,T0.05intergenic_variantHLA-DQA1 - HLA-DQB16e-104Tier 4: intronic/intergenic
rs728236412102319699T>A,C0.137intron_variantIL18R1, IL1RL11e-78Tier 4: intronic/intergenic
rs79363121176582682G>C,T0.477intergenic_variantEMSY - LINC027571e-77Tier 4: intronic/intergenic
rs99296996209697A>C,G,T0.05intergenic_variantGTF3AP1 - IL333e-72Tier 4: intronic/intergenic
rs602275652102275879G>A,C,T0.05intron_variantCFAP144P2 - IL1RL15e-71Tier 4: intronic/intergenic
rs784821596213468C>A,G,T0.05intergenic_variantGTF3AP1 - IL339e-71Tier 4: intronic/intergenic
rs28407950632658571C>G,T0.244intergenic_variantHLA-DQA1 - HLA-DQB17e-70Tier 4: intronic/intergenic
rs47953991739905186T>A,C0.471intron_variantGSDMB7e-65Tier 4: intronic/intergenic
rs28690449438787511C>A,G,T0.201intergenic_variantTLR10 - TLR12e-64Tier 4: intronic/intergenic
rs116551981739869916C>T0.05intron_variantZPBP21e-63Tier 4: intronic/intergenic
rs10087231739910014G>C,T0.489intron_variantGSDMB2e-62Tier 4: intronic/intergenic
rs112367971176588605C>A0.05regulatory_region_variantEMSY - LINC027576e-62Tier 3: regulatory
rs14386735111131801C>A,G,T0.483intergenic_variantWDR36 - RPS3AP217e-62Tier 4: intronic/intergenic
rs2428494631354420T>A,C,G0.05intron_variantHLA-B2e-60Tier 4: intronic/intergenic
rs342902852241759225G>A0.255intron_variantD2HGDH6e-58Tier 4: intronic/intergenic
rs99011461739887090G>A0.49intergenic_variantZPBP2 - GSDMB4e-57Tier 4: intronic/intergenic
rs124708642102309902G>A,T0.05intergenic_variantCFAP144P2 - IL1RL12e-56Tier 4: intronic/intergenic
rs18612452102350446C>T0.05intron_variantIL18R1, IL1RL11e-52Tier 4: intronic/intergenic
rs18372535111066174T>C0.261intron_variantBCLAF1P1 - TSLP1e-51Tier 4: intronic/intergenic
rs1444782109016708G>A0.424intron_variantLINC02676 - LINC007091e-48Tier 4: intronic/intergenic
rs1775554109012377A>C,G,T0.05intron_variantLINC02676 - LINC007092e-46Tier 4: intronic/intergenic
rs727434611567149412C>A,T0.05intron_variantSMAD33e-46Tier 4: intronic/intergenic
rs129356571611125184G>A,T0.244intron_variantCLEC16A6e-45Tier 4: intronic/intergenic
rs6881270535878993C>T0.2753_prime_UTR_variantIL7R3e-44Tier 2: splice/UTR
rs6255731296047765C>G,T0.05intron_variantRANBP6 - GTF3AP13e-43Tier 4: intronic/intergenic
rs556460911176588387G>A0.05regulatory_region_variantEMSY - LINC027579e-42Tier 3: regulatory

ClinVar germline variants

12 retrieved; paginated sample, class counts are floors:

6 uncertain significance, 2 likely pathogenic, 2 pathogenic, 1 benign, 1 risk factor

ClinVarVariant (HGVS)GeneClassificationReview
26784746;XY;t(9;11)(q34;p11.2)dnPathogeniccriteria provided, single submitter
48648NM_032415.7(CARD11):c.367G>A (p.Gly123Ser)CARD11Pathogeniccriteria provided, multiple submitters, no conflicts
26780746;XY;t(7;9)(q21;p23)dnLikely pathogeniccriteria provided, single submitter
26789246;XX;t(4;14)(p15.2;q13)dnLikely pathogeniccriteria provided, single submitter
638564NM_004117.4(FKBP5):c.106-2332A>CFKBP5risk factorno assertion criteria provided
26781046;XX;t(4;15)(q31.3;q15)Uncertain significancecriteria provided, single submitter
26782046;XY;t(16;20)(q11.2;q13.2)dnUncertain significancecriteria provided, single submitter
26786246;XY;t(1;3)(p22;q21)dnUncertain significancecriteria provided, single submitter
26791446;XY;t(9;14)(p21;q12)dnUncertain significancecriteria provided, single submitter
26792446;XY;t(16;20)(q23.1;p11.22)Uncertain significancecriteria provided, single submitter
26794246;XY;t(1;14)(q42;q13)Uncertain significancecriteria provided, single submitter
12712NM_001060.6(TBXA2R):c.179G>T (p.Arg60Leu)TBXA2RBenigncriteria provided, single submitter

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 0 · Orphanet: 55 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 1

Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)

GeneHGNCEvidence routes
CARD11CARD11GWAS, Orphanet

Orphanet rare-disease linkage (cohort genes)

GeneOrphanet IDRare disease
CARD11Orphanet:300324Persistent polyclonal B-cell lymphocytosis
CARD11Orphanet:357237Combined immunodeficiency due to CARD11 deficiency
CARD11Orphanet:464336BENTA disease
CARD11Orphanet:619972CADINS disease
BCL6Orphanet:480541High grade B-cell lymphoma with MYC and/ or BCL2 and/or BCL6 rearrangement
BCL6Orphanet:545Follicular lymphoma
BCL6Orphanet:98838Primary mediastinal large B-cell lymphoma
BCL6Orphanet:98839Intravascular large B-cell lymphoma
RHOOrphanet:215Congenital stationary night blindness
RHOOrphanet:52427Retinitis punctata albescens
RHOOrphanet:791Retinitis pigmentosa
BCROrphanet:261330Distal 22q11.2 microdeletion syndrome
BCROrphanet:521Chronic myeloid leukemia
BCROrphanet:585909B-lymphoblastic leukemia/lymphoma with t(9;22)(q34.1;q11.2)
BCROrphanet:99861Precursor T-cell acute lymphoblastic leukemia
RORAOrphanet:528084Non-specific syndromic intellectual disability
RORCOrphanet:477857Mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiency
RPL5Orphanet:124Diamond-Blackfan anemia
CFBOrphanet:544472Atypical hemolytic uremic syndrome with complement gene abnormality
RPS26Orphanet:124Diamond-Blackfan anemia
RUNX1Orphanet:102724Acute myeloid leukemia with t(8;21)(q22;q22) translocation
RUNX1Orphanet:521Chronic myeloid leukemia
RUNX1Orphanet:71290Familial platelet disorder with associated myeloid malignancy
RUNX1Orphanet:98850Aggressive systemic mastocytosis
RYR1Orphanet:169186Autosomal recessive centronuclear myopathy
RYR1Orphanet:169189Autosomal dominant centronuclear myopathy
RYR1Orphanet:178145Moderate multiminicore disease with hand involvement
RYR1Orphanet:324581Benign Samaritan congenital myopathy
RYR1Orphanet:33108Lethal multiple pterygium syndrome
RYR1Orphanet:423Malignant hyperthermia of anesthesia
RYR1Orphanet:424107Congenital myopathy with myasthenic-like onset
RYR1Orphanet:466650Exercise-induced malignant hyperthermia
RYR1Orphanet:597Central core disease
RYR1Orphanet:700188Calf-predominant weakness-gastrocnemius medialis atrophy-distal myopathy
RYR1Orphanet:98905Congenital multicore myopathy with external ophthalmoplegia
RYR1Orphanet:99741King-Denborough syndrome
SARDHOrphanet:3129Sarcosinemia
ATXN2Orphanet:803Amyotrophic lateral sclerosis
ATXN2Orphanet:98756Spinocerebellar ataxia type 2
SGCGOrphanet:353Gamma-sarcoglycan-related limb-girdle muscular dystrophy R5
SKIC2Orphanet:84064Trichohepatoenteric syndrome
SLCO1B1Orphanet:3111Rotor syndrome
SLC22A5Orphanet:158Systemic primary carnitine deficiency
SLC34A1Orphanet:157215Hereditary hypophosphatemic rickets with hypercalciuria
SLC34A1Orphanet:244305Dominant hypophosphatemia with nephrolithiasis or osteoporosis
SLC34A1Orphanet:300547Autosomal recessive infantile hypercalcemia
SLC34A1Orphanet:3337Primary Fanconi renotubular syndrome
SMARCA2Orphanet:3051Nicolaides-Baraitser syndrome
SMARCA2Orphanet:637013SMARCA2-related blepharophimosis-intellectual disability syndrome
SMARCC2Orphanet:1465Coffin-Siris syndrome

Cohort genes → proteins

75 cohort genes, 67 distinct canonical proteins.

Evidence partition

SubsetGenes
gwas_only74
gwas_and_clinvar1

Cohort genes (full)

SymbolHGNCEnsemblUniProtNameEvidence
CARD11HGNC:16393ENSG00000198286Q9BXL7Caspase recruitment domain-containing protein 11gwas,clinvar
BCL6HGNC:1001ENSG00000113916P41182B-cell lymphoma 6 proteingwas
RHOHGNC:10012ENSG00000163914P08100Rhodopsingwas
RING1HGNC:10018ENSG00000204227Q06587E3 ubiquitin-protein ligase RING1gwas
RNF14HGNC:10058ENSG00000013561Q9UBS8E3 ubiquitin-protein ligase RNF14gwas
RNF5HGNC:10068ENSG00000204308Q99942E3 ubiquitin-protein ligase RNF5gwas
BCRHGNC:1014ENSG00000186716P11274Breakpoint cluster region proteingwas
SNORD21HGNC:10144ENSG00000206680small nucleolar RNA, C/D box 21gwas
SNORD48HGNC:10188ENSG00000201823small nucleolar RNA, C/D box 48gwas
SNORD52HGNC:10202ENSG00000201754small nucleolar RNA, C/D box 52gwas
SNORA66HGNC:10223ENSG00000207523small nucleolar RNA, H/ACA box 66gwas
RORAHGNC:10258ENSG00000069667P35398Nuclear receptor ROR-alphagwas
RORCHGNC:10260ENSG00000143365P51449Nuclear receptor ROR-gammagwas
RPL19HGNC:10312ENSG00000108298P84098Large ribosomal subunit protein eL19gwas
RPL41HGNC:10354ENSG00000229117P62945Small ribosomal subunit protein eS32gwas
RPL41P2HGNC:10357ENSG00000256338ribosomal protein L41 pseudogene 2gwas
RPL5HGNC:10360ENSG00000122406P46777Large ribosomal subunit protein uL18gwas
CFBHGNC:1037ENSG00000243649P00751Complement factor Bgwas
RPS26HGNC:10414ENSG00000197728P62854Small ribosomal subunit protein eS26gwas
RUNX1HGNC:10471ENSG00000159216Q01196Runt-related transcription factor 1gwas
RUNX3HGNC:10473ENSG00000020633Q13761Runt-related transcription factor 3gwas
RYBPHGNC:10480ENSG00000163602Q8N488RING1 and YY1-binding proteingwas
RYR1HGNC:10483ENSG00000196218P21817Ryanodine receptor 1gwas
S100A10HGNC:10487ENSG00000197747P60903Protein S100-A10gwas
S100A11HGNC:10488ENSG00000163191P31949Protein S100-A11gwas
S100A12HGNC:10489ENSG00000163221P80511Protein S100-A12gwas
S100A8HGNC:10498ENSG00000143546P05109Protein S100-A8gwas
S100A9HGNC:10499ENSG00000163220P06702Protein S100-A9gwas
BIDHGNC:1050ENSG00000015475P55957BH3-interacting domain death agonistgwas
SARDHHGNC:10536ENSG00000123453Q9UL12Sarcosine dehydrogenase, mitochondrialgwas
ATXN2HGNC:10555ENSG00000204842Q99700Ataxin-2gwas
CXCR5HGNC:1060ENSG00000160683P32302C-X-C chemokine receptor type 5gwas
CCL20HGNC:10619ENSG00000115009P78556C-C motif chemokine 20gwas
CCL22HGNC:10621ENSG00000102962O00626C-C motif chemokine 22gwas
SEMG2HGNC:10743ENSG00000124157Q02383Semenogelin-2gwas
SGCGHGNC:10809ENSG00000102683Q13326Gamma-sarcoglycangwas
SHMT2HGNC:10852ENSG00000182199P34897Serine hydroxymethyltransferase, mitochondrialgwas
PMELHGNC:10880ENSG00000185664P40967Melanocyte protein PMELgwas
SIM2HGNC:10883ENSG00000159263Q14190Single-minded homolog 2gwas
SIPA1HGNC:10885ENSG00000213445Q96FS4Signal-induced proliferation-associated protein 1gwas
SKIC2HGNC:10898ENSG00000204351Q15477Superkiller complex protein 2gwas
SLCO1A2HGNC:10956ENSG00000084453P46721Solute carrier organic anion transporter family member 1A2gwas
SLCO1B1HGNC:10959ENSG00000134538Q9Y6L6Solute carrier organic anion transporter family member 1B1gwas
SLC22A4HGNC:10968ENSG00000197208Q9H015Solute carrier family 22 member 4gwas
SLC22A5HGNC:10969ENSG00000197375O76082Organic cation/carnitine transporter 2gwas
SLC24A2HGNC:10976ENSG00000155886Q9UI40Sodium/potassium/calcium exchanger 2gwas
BRAPHGNC:1099ENSG00000089234Q7Z569BRCA1-associated proteingwas
SLC34A1HGNC:11019ENSG00000131183Q06495Sodium-dependent phosphate transport protein 2Agwas
BRD2HGNC:1103ENSG00000204256P25440Bromodomain-containing protein 2gwas
SLC6A12HGNC:11045ENSG00000111181P48065Sodium- and chloride-dependent betaine transportergwas

Cohort function summary

Lead sentence per gene, UniProt-curated.

SymbolProtein nameFunction (lead sentence)
CARD11Caspase recruitment domain-containing protein 11Adapter protein that plays a key role in adaptive immune response by transducing the activation of NF-kappa-B downstream of T-cell receptor (TCR) and B-cell receptor (BCR) engagement.
BCL6B-cell lymphoma 6 proteinTranscriptional repressor mainly required for germinal center (GC) formation and antibody affinity maturation which has different mechanisms of action specific to the lineage and biological functions.
RHORhodopsinPhotoreceptor required for image-forming vision at low light intensity.
RING1E3 ubiquitin-protein ligase RING1Constitutes one of the E3 ubiquitin-protein ligases that mediate monoubiquitination of ‘Lys-119’ of histone H2A, thereby playing a central role in histone code and gene regulation.
RNF14E3 ubiquitin-protein ligase RNF14E3 ubiquitin-protein ligase that plays a key role in the RNF14-RNF25 translation quality control pathway, a pathway that takes place when a ribosome has stalled during translation, and which promotes ubiquitination and degradation of trans…
RNF5E3 ubiquitin-protein ligase RNF5Membrane-bound E3 ubiquitin-protein ligase that mediates ubiquitination of target proteins.
BCRBreakpoint cluster region proteinProtein with a unique structure having two opposing regulatory activities toward small GTP-binding proteins.
RORANuclear receptor ROR-alphaNuclear receptor that binds DNA as a monomer to ROR response elements (RORE) containing a single core motif half-site 5’-AGGTCA-3’ preceded by a short A-T-rich sequence.
RORCNuclear receptor ROR-gammaNuclear receptor that binds DNA as a monomer to ROR response elements (RORE) containing a single core motif half-site 5’-AGGTCA-3’ preceded by a short A-T-rich sequence.
RPL19Large ribosomal subunit protein eL19Component of the large ribosomal subunit.
RPL41Small ribosomal subunit protein eS32Component of the small ribosomal subunit (Ref.8).
RPL5Large ribosomal subunit protein uL18Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.
CFBComplement factor BPrecursor of the catalytic component of the C3 and C5 convertase complexes of the alternative pathway of the complement system, a cascade of proteins that leads to phagocytosis and breakdown of pathogens and signaling that strengthens the…
RPS26Small ribosomal subunit protein eS26Component of the small ribosomal subunit.
RUNX1Runt-related transcription factor 1Forms the heterodimeric complex core-binding factor (CBF) with CBFB.
RUNX3Runt-related transcription factor 3Forms the heterodimeric complex core-binding factor (CBF) with CBFB.
RYBPRING1 and YY1-binding proteinComponent of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development.
RYR1Ryanodine receptor 1Cytosolic calcium-activated calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytosol and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules.
S100A10Protein S100-A10Because S100A10 induces the dimerization of ANXA2/p36, it may function as a regulator of protein phosphorylation in that the ANXA2 monomer is the preferred target (in vitro) of tyrosine-specific kinase.
S100A11Protein S100-A11Facilitates the differentiation and the cornification of keratinocytes.
S100A12Protein S100-A12S100A12 is a calcium-, zinc- and copper-binding protein which plays a prominent role in the regulation of inflammatory processes and immune response.
S100A8Protein S100-A8S100A8 is a calcium- and zinc-binding protein which plays a prominent role in the regulation of inflammatory processes and immune response.
S100A9Protein S100-A9S100A9 is a calcium- and zinc-binding protein which plays a prominent role in the regulation of inflammatory processes and immune response.
BIDBH3-interacting domain death agonistInduces caspases and apoptosis.
SARDHSarcosine dehydrogenase, mitochondrialCatalyzes the last step of the oxidative degradation of choline to glycine.
ATXN2Ataxin-2Involved in EGFR trafficking, acting as negative regulator of endocytic EGFR internalization at the plasma membrane.
CXCR5C-X-C chemokine receptor type 5Cytokine receptor that binds to B-lymphocyte chemoattractant (BLC).
CCL20C-C motif chemokine 20Acts as a ligand for C-C chemokine receptor CCR6.
CCL22C-C motif chemokine 22May play a role in the trafficking of activated/effector T-lymphocytes to inflammatory sites and other aspects of activated T-lymphocyte physiology.
SEMG2Semenogelin-2Participates in the formation of a gel matrix (sperm coagulum) entrapping the accessory gland secretions and ejaculated spermatozoa.
SGCGGamma-sarcoglycanComponent of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.
SHMT2Serine hydroxymethyltransferase, mitochondrialCatalyzes the cleavage of serine to glycine accompanied with the production of 5,10-methylenetetrahydrofolate, an essential intermediate for purine biosynthesis.
PMELMelanocyte protein PMELForms physiological amyloids that play a central role in melanosome morphogenesis and pigmentation.
SIM2Single-minded homolog 2Transcription factor that may be a master gene of CNS development in cooperation with Arnt.
SIPA1Signal-induced proliferation-associated protein 1GTPase activator for the nuclear Ras-related regulatory proteins Rap1 and Rap2 in vitro, converting them to the putatively inactive GDP-bound state.
SKIC2Superkiller complex protein 2Helicase component of the SKI complex, a multiprotein complex that assists the RNA-degrading exosome during the mRNA decay and quality-control pathways.
SLCO1A2Solute carrier organic anion transporter family member 1A2Na(+)-independent transporter that mediates the cellular uptake of a broad range of organic anions such as the endogenous bile salts cholate and deoxycholate, either in their unconjugated or conjugated forms (taurocholate and glycocholate)…
SLCO1B1Solute carrier organic anion transporter family member 1B1Mediates the Na(+)-independent uptake of organic anions.
SLC22A4Solute carrier family 22 member 4Transporter that mediates the transport of endogenous and microbial zwitterions and organic cations.
SLC22A5Organic cation/carnitine transporter 2Sodium-ion dependent, high affinity carnitine transporter.
SLC24A2Sodium/potassium/calcium exchanger 2Calcium, potassium:sodium antiporter that transports 1 Ca(2+) and 1 K(+) in exchange for 4 Na(+).
BRAPBRCA1-associated proteinNegatively regulates MAP kinase activation by limiting the formation of Raf/MEK complexes probably by inactivation of the KSR1 scaffold protein.
SLC34A1Sodium-dependent phosphate transport protein 2AInvolved in actively transporting phosphate into cells via Na(+) cotransport in the renal brush border membrane.
BRD2Bromodomain-containing protein 2Chromatin reader protein that specifically recognizes and binds histone H4 acetylated at ‘Lys-5’ and ‘Lys-12’ (H4K5ac and H4K12ac, respectively), thereby controlling gene expression and remodeling chromatin structures.
SLC6A12Sodium- and chloride-dependent betaine transporterTransporter that mediates cellular uptake of betaine and GABA in a sodium- and chloride-dependent process.
SLC6A13Sodium- and chloride-dependent GABA transporter 2Mediates sodium- and chloride-dependent transport of gamma-aminobutyric acid (GABA).
SLC7A10Asc-type amino acid transporter 1Associates with SLC3A2/4F2hc to form a functional heterodimeric complex that translocates small neutral L- and D-amino acids across the plasma membrane.
SLC8A1Sodium/calcium exchanger 1Mediates the exchange of one Ca(2+) ion against three to four Na(+) ions across the cell membrane, and thereby contributes to the regulation of cytoplasmic Ca(2+) levels and Ca(2+)-dependent cellular processes.
ZFP36L1mRNA decay activator protein ZFP36L1Zinc-finger RNA-binding protein that destabilizes several cytoplasmic AU-rich element (ARE)-containing mRNA transcripts by promoting their poly(A) tail removal or deadenylation, and hence provide a mechanism for attenuating protein synthes…
SLC9A2Sodium/hydrogen exchanger 2Plasma membrane Na(+)/H(+) antiporter.

Protein-family classification

Druggable: 14 · Difficult: 16 · Unknown: 45 · Druggable fraction: 0.19

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

FamilyGenesFoldFDR
Transporter55.2×0.028
Nuclear receptor210.3×0.081
Transcription factor131.4×0.386
Other/Unknown451.1×0.676
Ion channel11.5×0.984
Scaffold/PPI30.7×0.989
GPCR20.6×0.989
Protease10.5×0.989
Antibody/Immunoglobulin10.4×0.989
Enzyme (other)20.3×0.989

Per-gene assignment

SymbolFamilyDruggable?ECInterPro (top 3)
CARD11Scaffold/PPInoCARD, DEATH-like_dom_sf, P-loop_NTPase
BCL6Transcription factornoBTB/POZ_dom, SKP1/BTB/POZ_sf, Znf_C2H2_type
RHOGPCRyesGPCR_Rhodpsn, Rhodopsin, Opsin
RING1Transcription factornoZnf_RING, Znf_RING/FYVE/PHD, Znf_RING_CS
RNF14Transcription factornoZnf_RING, IBR_dom, RWD_dom
RNF5Transcription factornoZnf_RING, Znf_RING/FYVE/PHD, Znf_RING_CS
BCRScaffold/PPInoC2_dom, RhoGAP_dom, DH_dom
SNORD21Other/Unknownno
SNORD48Other/Unknownno
SNORD52Other/Unknownno
SNORA66Other/Unknownno
RORANuclear receptoryesNucl_hrmn_rcpt_lig-bd, Znf_hrmn_rcpt, Nuclear_hrmn_rcpt
RORCNuclear receptoryesNucl_hrmn_rcpt_lig-bd, Znf_hrmn_rcpt, Nuclear_hrmn_rcpt
RPL19Other/UnknownnoRibosomal_eL19_dom, Ribosomal_eL19_dom1, Ribosomal_eL19_CS
RPL41Other/UnknownnoRibosomal_eS32
RPL41P2Other/Unknownno
RPL5Other/UnknownnoRbsml_uL18_euk_arc, Ribosomal_uL18_C_euk, Ribosomal_L18
CFBProteaseyes3.4.21.47Sushi_SCR_CCP_dom, Trypsin_dom, Peptidase_S1A
RPS26Other/UnknownnoRibosomal_eS26, Ribosomal_eS26_sf, Ribosomal_eS26_CS
RUNX1Transcription factornoAML1_Runt, p53-like_TF_DNA-bd_sf, p53/RUNT-type_TF_DNA-bd_sf
RUNX3Transcription factornoAML1_Runt, p53-like_TF_DNA-bd_sf, p53/RUNT-type_TF_DNA-bd_sf
RYBPTranscription factornoZnf_RanBP2, YAF2_RYBP, Znf_RanBP2_sf
RYR1Ion channelyesRIH_dom, B30.2/SPRY, Ryanodine_rcpt
S100A10Other/UnknownnoS100/CaBP7/8-like_CS, EF-hand-dom_pair, S100_Ca-bd_sub
S100A11Other/UnknownnoS100/CaBP7/8-like_CS, EF_hand_dom, EF-hand-dom_pair
S100A12Other/UnknownnoS100/CaBP7/8-like_CS, EF_hand_dom, EF-hand-dom_pair
S100A8Other/UnknownnoS100/CaBP7/8-like_CS, EF_hand_dom, EF-hand-dom_pair
S100A9Other/UnknownnoS100/CaBP7/8-like_CS, EF_hand_dom, EF-hand-dom_pair
BIDOther/UnknownnoBID, Bcl2_BH3_motif_CS, Bcl-2-like_sf
SARDHOther/UnknownnoFAD-dep_OxRdtase, GCVT_N, GcvT_C
ATXN2Other/UnknownnoLsmAD_domain, PAM2_motif, LSM_dom_sf
CXCR5GPCRyesGPCR_Rhodpsn, Chemokine_CXCR5, GPCR_Rhodpsn_7TM
CCL20Other/UnknownnoChemokine_CC_CS, Chemokine_IL8-like_dom, Chemokine_CC_DCCL
CCL22Other/UnknownnoChemokine_CC_CS, Chemokine_IL8-like_dom, Interleukin_8-like_sf
SEMG2Other/UnknownnoSemenogelin
SGCGOther/UnknownnoSarcoglycan, Sarcoglycan_gamma/delta/zeta
SHMT2Enzyme (other)yes2.1.2.1Ser_HO-MeTrfase, PyrdxlP-dep_Trfase_major, PyrdxlP-dep_Trfase_small
PMELAntibody/ImmunoglobulinyesPKD_dom, Ig-like_fold, PKD/Chitinase_dom
SIM2Transcription factornoPAS, PAC, SIM_C
SIPA1Scaffold/PPInoRap/Ran_GAP_dom, PDZ, Rap/Ran-GAP_sf
SKIC2Other/UnknownnoHelicase_C-like, DEAD/DEAH_box_helicase_dom, Ski2/MTR4_C
SLCO1A2TransporteryesKazal_dom, OATP, MFS_dom
SLCO1B1TransporteryesKazal_dom, OATP, MFS_dom
SLC22A4TransporteryesOrgcat_transp/SVOP, MFS_sugar_transport-like, Sugar_transporter_CS
SLC22A5TransporteryesOrgcat_transp/SVOP, MFS_sugar_transport-like, Sugar_transporter_CS
SLC24A2Other/UnknownnoK/Na/Ca-exchanger, NaCa_Exmemb, NCX_ion-bd_dom_sf
BRAPTranscription factornoZnf_UBP, Znf_RING, BRAP2/ETP1_RRM
SLC34A1Other/UnknownnoNa/Pi_transpt
BRD2Other/UnknownnoBromodomain, Bromodomain_CS, NET_dom
SLC6A12Other/UnknownnoNa/ntran_symport, Na/ntran_symport_betaine, SNS_sf

Expression context

Cohort genes with no expression data: 0.

65 cohort genes are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

BucketGenes
narrow (1-5 tissues)0
moderate (6-20)1
broad (>20)74
unknown0

Top tissues across cohort

TissueCohort genes
lower esophagus mucosa12
granulocyte9
ganglionic eminence6
liver6
male germ line stem cell (sensu Vertebrata) in testis6
right lobe of liver6
buccal mucosa cell5
gastrocnemius4
adrenal tissue4
endothelial cell4
cortical plate4
sural nerve4
monocyte4
ventricular zone4
lymph node3
spleen3
vermiform appendix3
calcaneal tendon3
primordial germ cell in gonad3
mucosa of transverse colon3

Per-gene tissue summary (top 30)

SymbolBgee breadthFANTOM5 breadthSCXATop tissues
CARD11188broadmarkergranulocyte, lymph node, spleen
BCL6300ubiquitousmarkergastrocnemius, mucosa of stomach, blood
RHO38tissue_specificmarkeroptic choroid, neuron projection bundle connecting eye with brain, diaphragm
RING1133ubiquitousmarkerpituitary gland, adenohypophysis, right lobe of thyroid gland
RNF14289ubiquitousmarkeradrenal tissue, endothelial cell, oocyte
RNF5134ubiquitousmarkerganglionic eminence, adult mammalian kidney, cortical plate
BCR275ubiquitousmarkernucleus accumbens, caudate nucleus, putamen
SNORD2159yessural nerve, liver, adrenal tissue
SNORD4874tissue_specificyessural nerve, vermiform appendix, liver
SNORD528tissue_specificyessural nerve, Brodmann (1909) area 9, liver
SNORA66121yessural nerve, lower esophagus mucosa, adrenal tissue
RORA284ubiquitousmarkerupper leg skin, lateral nuclear group of thalamus, skin of hip
RORC209broadmarkergastrocnemius, male germ line stem cell (sensu Vertebrata) in testis, hindlimb stylopod muscle
RPL19301ubiquitousmarkerprimordial germ cell in gonad, calcaneal tendon, granulocyte
RPL41134ubiquitousmarkerovary, right ovary, left ovary
RPL41P2133broadmarkerbone marrow cell, vermiform appendix, duodenum
RPL5292ubiquitousmarkergerminal epithelium of ovary, primordial germ cell in gonad, parietal pleura
CFB134broadmarkerright lobe of liver, liver, gall bladder
RPS26140ubiquitousmarkergranulocyte, left adrenal gland cortex, mucosa of transverse colon
RUNX1253ubiquitousmarkerolfactory segment of nasal mucosa, epithelium of bronchus, mucosa of paranasal sinus
RUNX3220broadmarkergranulocyte, buccal mucosa cell, lymph node
RYBP292tissue_specificmarkerlower lobe of lung, cartilage tissue, endothelial cell
RYR1214broadmarkergluteal muscle, gastrocnemius, hindlimb stylopod muscle
S100A10295ubiquitousmarkermucosa of sigmoid colon, colonic mucosa, dorsal root ganglion
S100A11292ubiquitousmarkerlower esophagus mucosa, esophagus mucosa, olfactory segment of nasal mucosa
S100A12212broadmarkertrabecular bone tissue, monocyte, bone marrow
S100A8274broadmarkerpharyngeal mucosa, monocyte, mononuclear cell
S100A9244broadmarkergranulocyte, monocyte, leukocyte
BID253ubiquitousmarkermonocyte, leukocyte, mononuclear cell
SARDH173broadmarkerright lobe of liver, buccal mucosa cell, liver

Protein interactions among cohort

Intra-cohort edges: 48.

Hub genes (top 10 by interactor count)

SymbolInteractor count
RPL56,028
SHMT25,293
RUNX14,994
SMARCA24,237
BCL63,984
S100A93,907
SMARCC23,686
CARD113,587
RHO3,578
S100A83,432

Intra-cohort edges

ABSources
BCL6CXCR5string_interaction
BRD2RUNX3intact
RHOSLC24A2string_interaction
RING1RYBPbiogrid_interaction, intact, string_interaction
RPL5RPS26biogrid_interaction
RUNX1RUNX3string_interaction
RUNX1SLC22A4string_interaction
S100A10SLC8A1intact
S100A11SLC8A1intact
S100A12S100A8string_interaction
S100A12SLC8A1intact
S100A8S100A9biogrid_interaction, intact, string_interaction
S100A8SLC8A1intact
S100A9SLC8A1intact
S100A9SPRR2Ebiogrid_interaction
SARDHSHMT2string_interaction
SHMT2SNORA66biogrid_interaction
SHMT2SNORD21biogrid_interaction
SLC22A4SLC22A5intact
SLC22A4SLCO1A2string_interaction
SLC22A5SLCO1A2string_interaction
SMARCA2SMARCC2intact, string_interaction
SMARCA2SMARCE1intact, string_interaction
SMARCC2SMARCE1intact, string_interaction
SPRR1ASPRR2Astring_interaction
SPRR1ASPRR2Dstring_interaction
SPRR1ASPRR2Estring_interaction
SPRR1ASPRR2Fstring_interaction
SPRR1ASPRR2Gstring_interaction
SPRR1BSPRR2Astring_interaction
SPRR1BSPRR2Dstring_interaction
SPRR1BSPRR2Estring_interaction
SPRR1BSPRR2Fstring_interaction
SPRR1BSPRR2Gstring_interaction
SPRR2ASPRR2Dstring_interaction
SPRR2ASPRR2Estring_interaction
SPRR2ASPRR2Fstring_interaction
SPRR2ASPRR3string_interaction
SPRR2DSPRR2Estring_interaction
SPRR2DSPRR2Fstring_interaction
SPRR2DSPRR2Gstring_interaction
SPRR2DSPRR3string_interaction
SPRR2ESPRR2Fstring_interaction
SPRR2ESPRR2Gstring_interaction
SPRR2ESPRR3string_interaction
SPRR2FSPRR2Gstring_interaction
SPRR2FSPRR3string_interaction
SPRR2GSPRR3string_interaction

Structural data

PDB: 38 · AlphaFold-only: 29 · No structure: 8

Cohort genes with PDB structures (top 30)

SymbolUniProtPDB entries
BCL6P41182246
RPL19P84098190
RPS26P62854190
RPL41P62945185
RPL5P46777184
BRD2P25440174
RORCP51449161
SNRPB2P0857950
SMARCA2P5153132
SHMT2P3489727
CFBP0075126
PMELP4096720
BIDP5595717
S100A8P0510913
S100A9P0670213
SKIC2Q1547711
S100A12P805119
SLCO1B1Q9Y6L69
SMARCC2Q8TAQ29
SMARCE1Q969G38
S100A10P609037
CCL20P785566
BCRP112745
RUNX1Q011965
RYBPQ8N4885
SLC8A1P324185
RHOP081004
SLC7A10Q9NS824
SMPD1P174054
RORAP353983

AlphaFold-only cohort genes (top 30 by pLDDT)

SymbolUniProtpLDDT
SARDHQ9UL1293.03
SLC6A13Q9NSD589.18
CCL22O0062688.21
SLC22A4Q9H01585.07
RNF14Q9UBS883.00
CXCR5P3230280.85
SGCGQ1332680.24
SLCO1A2P4672179.97
SPRR2BP3532578.45
SPRR2GQ9BYE477.94
SPRR2EP2253177.66
SPRR2DP2253277.37
SPRR2AP3532677.32
BRAPQ7Z56976.92
SPRR2FQ96RM175.55
RING1Q0658772.69
SLC34A1Q0649572.24
SIPA1Q96FS472.20
SPRR1BP2252870.02
SPRR1AP3532169.36
RNF5Q9994268.71
SLC24A2Q9UI4067.75
SLC9A4Q6AI1466.73
SLC9A2Q9UBY066.40
SIM2Q1419063.05
SOX1O0057059.29
SPRR3Q9UBC952.87
SP2Q0208645.39
SEMG2Q0238330.69

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 604. Enrichment computed across 250 evidence-associated genes (169 with Reactome annotation).

Pathways by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 169 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

PathwayCohort genesFoldFDRSample cohort genes
TNFs bind their physiological receptors818.6×4e-06TNFRSF1B, TNFRSF6B, TNFRSF8, TNFSF15, TNFSF18, TNFSF4, FASLG, CD70
Differentiation of naive CD4+ T cells to T helper 1 cells (Th1 cells)420.8×0.004RUNX1, RUNX3, TBX21, TNF
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known610.7×0.004RING1, RUNX1, RYBP, SMARCA2, SMARCC2, SMARCE1
Formation of the cornified envelope105.2×0.004SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2D, SPRR2E, SPRR2F, SPRR2G (+2 more)
SLC-mediated transmembrane transport124.2×0.004RUNX1, SLCO1A2, SLCO1B1, SLC22A4, SLC22A5, SLC24A2, SLC6A12, SLC6A13 (+4 more)
Interleukin-4 and Interleukin-13 signaling95.5×0.004BCL6, RORA, RORC, CCL22, STAT6, TNF, TNFRSF1B, FASLG (+1 more)
Transport of small molecules182.7×0.011RNF5, RUNX1, RYR1, SLCO1A2, SLCO1B1, SLC22A4, SLC22A5, SLC24A2 (+10 more)
Activation of C3 and C5322.5×0.019CFB, C2, C4A
RUNX3 regulates p14-ARF320.3×0.021RUNX1, RUNX3, BRD2
TNFR2 non-canonical NF-kB pathway66.4×0.021TNF, TNFRSF11A, TNFRSF1B, FASLG, CD70, TRAF3
RUNX3 regulates RUNX1-mediated transcription245.0×0.036RUNX1, RUNX3
Regulation of TNFR1 signaling56.6×0.046TAX1BP1, TNF, TNFAIP3, TRAF1, UBE2D3
Reuptake of GABA233.8×0.052SLC6A12, SLC6A13
SLC-mediated transport of organic cations313.5×0.052RUNX1, SLC22A4, SLC22A5
R-HSA-549132313.5×0.052RUNX1, SLC22A4, SLC22A5
Negative regulators of DDX58/IFIH1 signaling47.7×0.064TAX1BP1, TNFAIP3, TRAF3, UBE2D3
R-HSA-42539364.6×0.068SLC24A2, SLC6A12, SLC7A10, SLC8A1, SLC9A2, SLC9A4
Formation of the polybromo-BAF (pBAF) complex311.3×0.074SMARCA2, SMARCC2, SMARCE1
R-HSA-42536655.4×0.075RUNX1, SLC22A4, SLC22A5, SLC6A12, SLC6A13
MyD88 deficiency (TLR2/4)310.7×0.078S100A8, S100A9, TLR1
Tachykinin receptors bind tachykinins222.5×0.079TAC3, TACR1
RUNX3 Regulates Immune Response and Cell Migration222.5×0.079RORC, RUNX3
IRAK4 deficiency (TLR2/4)310.1×0.079S100A8, S100A9, TLR1
Developmental Biology221.9×0.079RPL41, RPS26, RUNX1, SMARCA2, SMARCC2, SMARCE1, SOX1, SPRR1A (+14 more)
Transcriptional regulation by RUNX346.4×0.080RUNX1, RUNX3, BRD2, TEAD1
Keratinization93.0×0.080SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2D, SPRR2E, SPRR2F, SPRR2G (+1 more)
Regulation of MITF-M-dependent genes involved in pigmentation46.3×0.082PMEL, SMARCA2, SMARCC2, SMARCE1
Metal sequestration by antimicrobial proteins219.3×0.094S100A8, S100A9
Regulation of TLR by endogenous ligand38.8×0.094S100A8, S100A9, TLR1
Choline catabolism216.9×0.099SARDH, SLC22A4

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 221 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO termCohort genesFoldFDRSample cohort genes
regulation of transcription by RNA polymerase II442.3×1e-04RNF14, RORA, RORC, RUNX1, RUNX3, SIM2, BRD2, SMARCA2 (+36 more)
tumor necrosis factor-mediated signaling pathway812.0×2e-04TMSB4X, TNF, TNFRSF11A, TNFRSF1B, TNFSF18, CD70, TRAF1, TRAF3
epidermis development87.6×0.005SPRR1A, SPRR1B, SPRR2B, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3
positive regulation of inflammatory response95.9×0.008S100A12, S100A8, S100A9, STAT5B, TNF, TNFSF18, TNFSF4, CCN4 (+1 more)
keratinocyte differentiation77.8×0.009BCR, SPRR1A, SPRR1B, SPRR2B, SPRR2F, SPRR2G, SPRR3
regulation of T cell proliferation419.1×0.010BCL6, BID, TNFRSF1B, TNFSF18
keratinization77.4×0.010SPRR1B, SPRR2B, SPRR2D, SPRR2F, SPRR2G, SPRR3, TCHH
regulation of steroid metabolic process332.7×0.014RORA, RORC, STAT5B
negative regulation of transcription by RNA polymerase II272.2×0.021BCL6, RORC, RUNX1, RUNX3, RYBP, SIM2, SMARCA2, SOX1 (+19 more)
regulation of endothelial cell apoptotic process276.2×0.025TEK, TNF
regulation of cytokine production66.7×0.035BCL6, BTN3A2, BTNL2, TRAF3, UBASH3A, CCN4
inflammatory response162.7×0.035BCL6, S100A12, S100A8, S100A9, CCL20, CCL22, TACR1, TBXA2R (+8 more)
female courtship behavior250.8×0.042THRA, THRB
isotype switching to IgE isotypes250.8×0.042BCL6, STAT6
neutrophil aggregation250.8×0.042S100A8, S100A9
sodium ion import across plasma membrane411.3×0.042SLC34A1, SLC8A1, SLC9A2, SLC9A4
osteoclast differentiation57.8×0.042TFRC, TNF, TNFRSF11A, TOB2, CCN4
ossification66.2×0.042RUNX1, RUNX3, SLC34A1, THRA, TNFRSF11A, TWIST1
regulation of B cell differentiation317.6×0.045CARD11, ZFP36L1, IKZF3
thyroid hormone receptor signaling pathway238.1×0.052THRA, THRB
positive regulation of thyroid hormone receptor signaling pathway238.1×0.052THRA, THRB
T-helper 1 cell lineage commitment238.1×0.052STAT6, TBX21
tolerance induction in gut-associated lymphoid tissue238.1×0.052RORC, ZBTB16
citrate metabolic process238.1×0.052ACO1, ACO2
carnitine transport238.1×0.052SLC22A4, SLC22A5
negative regulation of CD4-positive, alpha-beta T cell differentiation238.1×0.052RUNX1, RUNX3
gamma-aminobutyric acid reuptake238.1×0.052SLC6A12, SLC6A13
obsolete positive regulation of NF-kappaB transcription factor activity65.6×0.052CARD11, S100A12, TNF, TNFSF18, TRAF1, CRNN
positive regulation of DNA-templated transcription182.3×0.052RNF14, RORA, RORC, RUNX1, RUNX3, RYBP, SMARCA2, SMARCC2 (+10 more)
positive regulation of blood pressure314.3×0.054TAC3, TACR1, TBXA2R

Therapeutics

Drugs indicated for this disease

27 approved, 41 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.

DrugDevelopment status
Beclomethasone DipropionateApproved (phase 4)
BenralizumabApproved (phase 4)
Betamethasone AcetateApproved (phase 4)
BudesonideApproved (phase 4)
CiclesonideApproved (phase 4)
Cortisone AcetateApproved (phase 4)
DexamethasoneApproved (phase 4)
DupilumabApproved (phase 4)
EpinephrineApproved (phase 4)
FlunisolideApproved (phase 4)
Fluticasone FuroateApproved (phase 4)
Fluticasone PropionateApproved (phase 4)
HydrocortisoneApproved (phase 4)
MentholApproved (phase 4)
MepolizumabApproved (phase 4)
MethylprednisoloneApproved (phase 4)
Methylprednisolone AcetateApproved (phase 4)
Mometasone FuroateApproved (phase 4)
MontelukastApproved (phase 4)
OmalizumabApproved (phase 4)
PrednisoloneApproved (phase 4)
PrednisoneApproved (phase 4)
ReslizumabApproved (phase 4)
TezepelumabApproved (phase 4)
Triamcinolone AcetonideApproved (phase 4)
ZafirlukastApproved (phase 4)
ZileutonApproved (phase 4)
AspirinPhase 3 (in late-stage trials)
AzithromycinPhase 3 (in late-stage trials)
BiotinPhase 3 (in late-stage trials)
CholecalciferolPhase 3 (in late-stage trials)
ClarithromycinPhase 3 (in late-stage trials)
ColchicinePhase 3 (in late-stage trials)
DepemokimabPhase 3 (in late-stage trials)
DoxofyllinePhase 3 (in late-stage trials)
ErgocalciferolPhase 3 (in late-stage trials)
FenoterolPhase 3 (in late-stage trials)
FevipiprantPhase 3 (in late-stage trials)
FexofenadinePhase 3 (in late-stage trials)
Fish OilPhase 3 (in late-stage trials)
FluticasonePhase 3 (in late-stage trials)
FormoterolPhase 3 (in late-stage trials)
GlycopyrroniumPhase 3 (in late-stage trials)
Human Immunoglobulin GPhase 3 (in late-stage trials)
IcosapentPhase 3 (in late-stage trials)
IndacaterolPhase 3 (in late-stage trials)
Influenza Virus VaccinePhase 3 (in late-stage trials)
Lactose, AnhydrousPhase 3 (in late-stage trials)
LebrikizumabPhase 3 (in late-stage trials)
LevocarnitinePhase 3 (in late-stage trials)
LevocetirizinePhase 3 (in late-stage trials)
LevosalbutamolPhase 3 (in late-stage trials)
LoratadinePhase 3 (in late-stage trials)
Magnesium Sulfate AnhydrousPhase 3 (in late-stage trials)
MasitinibPhase 3 (in late-stage trials)
MethacholinePhase 3 (in late-stage trials)
MethotrexatePhase 3 (in late-stage trials)
NedocromilPhase 3 (in late-stage trials)
ProcaterolPhase 3 (in late-stage trials)
RoflumilastPhase 3 (in late-stage trials)
SalmeterolPhase 3 (in late-stage trials)
SimvastatinPhase 3 (in late-stage trials)
TelithromycinPhase 3 (in late-stage trials)
TerbutalinePhase 3 (in late-stage trials)
TimapiprantPhase 3 (in late-stage trials)
TiotropiumPhase 3 (in late-stage trials)
TralokinumabPhase 3 (in late-stage trials)
VilanterolPhase 3 (in late-stage trials)

Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Adalimumab, Alanine, Alendronic Acid, Ambrisentan, Amlitelimab, Amoxicillin, Antipyrine, Arformoterol, Arginine, Astegolimab, Atorvastatin, Benzocaine, Bosentan, Brodalumab, Clavulanic Acid, Clazakizumab, Clopidogrel, Curcumin, Daclizumab, Dexpramipexole, Doconexent, Dornase Alfa, Duvelisib, Ensifentrine, Esomeprazole, Etanercept, Fiboflapon, Fingolimod, Gefapixant, Glycine, Golimumab, INTERFERON BETA-1A, Itepekimab, L-Citrulline, Lenzilumab, Ligelizumab, Minocycline, Nadolol, Olodaterol, Palifermin, Pemirolast, Pioglitazone, Povorcitinib, Prasugrel, Propranolol, Ramatroban, Rilzabrutinib, Risankizumab, Rosiglitazone, Secukinumab, Semaglutide, Senicapoc, Setipiprant, Sirukumab, Sitaxentan, Sodium Chloride, Stapokibart, Tacrolimus Anhydrous, Terfenadine, Tozorakimab, Umeclidinium.

Drug target analysis

Approved (phase 4): 15 · Phase ≥3: 16 · Phased (≥1): 23 · Undrugged: 52

Druggability breadth: 97 of 250 evidence-associated genes (39%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Genes with an approved drug

The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.

SymbolExample approved molecule
BCRPONATINIB
RORATRETINOIN
RORCDIGOXIN
RPL19GENTAMICIN SULFATE
RPL41GENTAMICIN SULFATE
RPL5GENTAMICIN SULFATE
CFBIPTACOPAN
RPS26GENTAMICIN SULFATE
RUNX1APOMORPHINE HYDROCHLORIDE
BIDVENETOCLAX
SHMT2OXAPROZIN
SLCO1A2RIFAMPIN
SLCO1B1CANDESARTAN CILEXETIL
SLC34A1SODIUM PHOSPHATE, DIBASIC, ANHYDROUS
SMPD1IMIPRAMINE

Top cohort targets by molecule count

SymbolMoleculesMax phase
BCR644
SLCO1B1574
RORC94
BRD293
SHMT274
BID44
SLC9A232
SMPD134
BCL622
RORA24

Drugs targeting cohort genes (top 30)

MoleculeMax phaseTargets in cohort
PONATINIB4BCR
DASATINIB ANHYDROUS4BCR
IMATINIB MESYLATE4BCR
INFIGRATINIB4BCR
NILOTINIB4BCR
BOSUTINIB4BCR
ASCIMINIB4BCR
DASATINIB4BCR
TIRBANIBULIN4BCR
IMATINIB4BCR
FEDRATINIB4BCR
TIVOZANIB4BCR
LENVATINIB4BCR
AXITINIB4BCR
IBRUTINIB4BCR
REGORAFENIB4BCR
CABOZANTINIB4BCR
VANDETANIB4BCR
TOVORAFENIB4BCR
NINTEDANIB4BCR
ERLOTINIB4BCR, SLCO1B1
CRIZOTINIB4BCR
TRETINOIN4RORA, RORC
DIGOXIN4RORC, SLCO1B1
ALITRETINOIN4RORC
GENTAMICIN SULFATE4RPL19, RPL41, RPL5, RPS26
IPTACOPAN4CFB
APOMORPHINE HYDROCHLORIDE4RUNX1
VENETOCLAX4BID
OXAPROZIN4SHMT2

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 3.

Cohort genes with ChEMBL bioactivity (full, sorted by assay count)

SymbolAssaysType breakdown
RORC758Binding:707, Functional:50, Unclassified:1
BRD2681Binding:655, Functional:19, ADMET:7
BCR486Binding:478, Functional:6, Toxicity:2
SMARCA2311Binding:274, Functional:25, ADMET:12
SLCO1B1242Functional:106, ADMET:82, Binding:53, Toxicity:1
BCL6209Binding:202, Functional:7
RORA115Binding:111, Functional:3, Unclassified:1
SLC22A597Functional:79, ADMET:18
RPL1990Binding:90
RPL590Binding:90
RPL4189Binding:89
RPS2689Binding:89
SLCO1A270Functional:60, ADMET:9, Binding:1
SLC6A1250Binding:48, Functional:2
BID44Binding:44
SMPD142Binding:40, Functional:2
CFB33Binding:33
CXCR533Binding:21, Functional:12
SLC22A429Functional:26, ADMET:3
RUNX120Binding:17, Functional:3
RYR116Binding:13, Functional:3
SLC6A1315Binding:15
S100A1012Binding:12
S100A910Binding:10
SLC9A210Binding:8, Functional:2
SLC8A19Binding:8, Functional:1
SLC34A18Binding:7, Functional:1
SMARCC27Binding:7
SMARCE17Binding:7
SNRPB27Binding:7
S100A86Binding:6
SHMT26Binding:6
ATXN25Binding:3, Functional:2
RNF52Binding:2
BRAP2Binding:2
RHO1Binding:1
RING11Binding:1
RYBP1Binding:1
S100A111Binding:1
CCL221Binding:1
SLC24A21Functional:1
SPRR31Binding:1

Cohort enzymes (BRENDA EC)

SymbolEC numbersNames
CFB3.4.21.47alternative-complement-pathway C3/C5 convertase
SHMT22.1.2.1glycine hydroxymethyltransferase
SMPD13.1.4.12sphingomyelin phosphodiesterase

Cohort genes with high screening signal

≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.

SymbolChEMBL assays
BCL6209
BCR486
RORA115
RORC758
SLCO1B1242
BRD2681
SMARCA2311

Pharmacogenomics

Cohort genes with a PharmGKB record: 75; with CPIC/DPWG dosing guidelines: 2.

Cohort genes with a CPIC/DPWG dosing guideline

SymbolCPIC guidelines
RYR11
SLCO1B11

Chemical tractability of cohort targets

30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

CompoundMax phaseCohort target (bioactivity)
PONATINIB4BCR
DASATINIB ANHYDROUS4BCR
IMATINIB MESYLATE4BCR
INFIGRATINIB4BCR
NILOTINIB4BCR
BOSUTINIB4BCR
ASCIMINIB4BCR
DASATINIB4BCR
TIRBANIBULIN4BCR
IMATINIB4BCR
FEDRATINIB4BCR
TIVOZANIB4BCR
LENVATINIB4BCR
AXITINIB4BCR
IBRUTINIB4BCR
REGORAFENIB4BCR
CABOZANTINIB4BCR
VANDETANIB4BCR
TOVORAFENIB4BCR
NINTEDANIB4BCR
ERLOTINIB4BCR, SLCO1B1
CRIZOTINIB4BCR
TRETINOIN4RORA, RORC
DIGOXIN4RORC, SLCO1B1
ALITRETINOIN4RORC
GENTAMICIN SULFATE4RPL19, RPL41, RPL5, RPS26
IPTACOPAN4CFB
APOMORPHINE HYDROCHLORIDE4RUNX1
VENETOCLAX4BID
OXAPROZIN4SHMT2

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

TierDefinitionGenesSymbols
AApproved (phase 4 drug)15BCR, RORA, RORC, RPL19, RPL41, RPL5, CFB, RPS26, RUNX1, BID (+5 more)
BPhased (≥1) drug, not yet approved8BCL6, S100A8, BRD2, SLC6A12, SLC6A13, SLC9A2, SMARCA2, SNRPB2
CDruggable family + PDB, no drug5RHO, RYR1, PMEL, SLC22A5, SLC7A10
DDruggable family + AlphaFold only, no drug2CXCR5, SLC22A4
EDifficult family or no structure, no drug45CARD11, RING1, RNF14, RNF5, SNORD21, SNORD48, SNORD52, SNORA66, RPL41P2, RUNX3 (+35 more)

Undrugged target profiles

52 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

SymbolChEMBL assaysDrugged partners (top 3)
S100A910S100A8
SLC22A429RUNX1
CARD110
RHO1
RING11
RNF140
RNF52
SNORD210
SNORD480
SNORD520
SNORA660
RPL41P20
RUNX30
RYBP1
RYR116
S100A1012
S100A111
S100A120
SARDH0
ATXN25
CXCR533
CCL200
CCL221
SEMG20
SGCG0
PMEL0
SIM20
SIPA10
SKIC20
SLC22A597

Clinical trials & evidence

Clinical trials

Clinical trials: 3,826.

Phase distribution (across all retrieved trials)

PhaseTrials
PHASE3490
PHASE4374
PHASE2185
PHASE2/PHASE335
PHASE1/PHASE216

Top trials by phase / activity

NCTPhaseStatusTitle
NCT01225913PHASE4RECRUITINGMechanism(s) of Airflow Limitation During Exacerbation of Asthma
NCT03105843PHASE4RECRUITINGSensory-Mechanical Responses to Eucapneic Voluntary Hyperventilation and Mannitol
NCT03694158PHASE4ACTIVE_NOT_RECRUITINGInvestigating Dupilumab’s Effect in Asthma by Genotype
NCT03889743PHASE4RECRUITINGInnovative Steroid Treatment to Reduce Asthma Development in Children After First-time Rhinovirus Induced Wheezing
NCT03953300PHASE4ACTIVE_NOT_RECRUITINGBenralizumab Airway Remodeling Study in Severe Eosinophilic Asthmatics
NCT04380038PHASE4RECRUITINGViral Infection in Asthma (VIA) Study
NCT04565483PHASE4RECRUITINGPredictive Signature of Benralizumab Response
NCT04743791PHASE4RECRUITINGMeasuring the Effect of Dupilumab Treatment on Mucociliary Clearance (MCC) in Subjects With Moderate to Severe Asthma
NCT04763447PHASE4RECRUITINGShort Treatment with Omalizumab for Severe Asthma
NCT05097287PHASE4ACTIVE_NOT_RECRUITINGStudy Assessing the Long-term Effect of Dupilumab on Prevention of Lung Function Decline in Adult Patients With Uncontrolled Moderate to Severe Asthma
NCT05598814PHASE4ACTIVE_NOT_RECRUITINGMepolizumab to CRSwNP Through 12 Months - Randomised to FESS and Non-FESS Within the First 2 Weeks
NCT05626777PHASE4ACTIVE_NOT_RECRUITINGSymptoms Control and adhErenCe Assessment During Treatment With MepolizUmab New pREfilled Devices
NCT06041386PHASE4ACTIVE_NOT_RECRUITINGREIMAGINE - Real World EvaluatIon of Mepolizumab in Severe Asthma achievinG on Treatment clinIcal remissioN, a prospEctive Study
NCT06152653PHASE4RECRUITINGThe Effects of Positive Airway Pressure on the Mucolytic Effects of NAC (TEAM)
NCT06372496PHASE4ACTIVE_NOT_RECRUITINGPragmatic Open - Label Randomized Clinical Trial of FF/UMEC/VI vs Non-ellipta Usual Care ICS-LABA for Adult Participants With Uncontrolled Asthma
NCT06422689PHASE4ACTIVE_NOT_RECRUITINGCombination Short-Acting BroNchodilator and Inhaled Corticosteroid Rescue Therapy on Health Outcomes in Routine Care
NCT06556264PHASE4NOT_YET_RECRUITINGImmunologic Impact of Dupilumab in Patients Suffering From Asthma and Chronic Rhinosinusitis With Polyps
NCT06572228PHASE4ACTIVE_NOT_RECRUITINGEfficacy of Dupilumab Added to Medium Dose Inhaled Corticosteroid/Long-acting Beta-agonist (ICS/LABA) in Comparison to ICS Dose Escalation to High Dose ICS/LABA in Adolescent and Adult Patients With Uncontrolled Asthma
NCT06705764PHASE4NOT_YET_RECRUITINGTezepelumab in the Treatment of Emergency Room Asthma in Adults (TERAA)
NCT06818019PHASE4NOT_YET_RECRUITINGWithdrawal of Dupilumab in Severe Asthma
NCT06970080PHASE4RECRUITINGTherapeutic Relevance of Abnormal Airway Morphology in Asthma
NCT07052942PHASE4RECRUITINGIndividualizing Treatment for Asthma in Primary Care (Full Study)
NCT07166939PHASE4RECRUITING45th Multicenter Airway Research Collaboration
NCT07228052PHASE4NOT_YET_RECRUITINGGiving Asthmatics Intramuscular Steroids for Preventing Return to the Emergency Department
NCT07343661PHASE4ENROLLING_BY_INVITATIONBeyond EOsinophils: proteoMICS to Identify Potential Biomarker of Organ Damage and Response to MEPOLIZUMAB in EGPA
NCT07426458PHASE4RECRUITINGVentilation and Perfusion in Asthmatics
NCT00070707PHASE4COMPLETEDNasonex Compared With Placebo in Participants With Seasonal Allergic Rhinitis (SAR) and Concomitant Asthma (P03280)
NCT00071552PHASE4TERMINATEDEfficacy of QVAR vs Flovent Diskus on Small Airways in Poorly Controlled Asthmatic Adolescents/Adult Patients
NCT00096954PHASE4COMPLETEDA Prospective, Randomized, Double-Blind Study of the Efficacy of Omalizumab (Xolair) in Atopic Asthmatics With Good Lung Capacity Who Remain Difficult to Treat (EXACT)
NCT00102765PHASE4COMPLETEDStudy Of Asthma In Patients Of African Descent
NCT00102882PHASE4COMPLETEDStudy Of Asthma And Genetics In Patients To Be Treated With Fluticasone Propionate/Salmeterol Or Salmeterol Xinafoate
NCT00124176PHASE4COMPLETEDContinuous Levalbuterol for Treatment of Status Asthmaticus in Children
NCT00133042PHASE4COMPLETEDThe Effect of Omalizumab on Airway Responsiveness to Adenosine in Patients With Poorly Controlled Asthma
NCT00140881PHASE4COMPLETEDA Study to Determine the Effect of Montelukast Sodium as an Episode Modifier in the Treatment of Infrequent Episodic Asthma in Children (0476-165)
NCT00140946PHASE4COMPLETEDA Study to Assess the Effect of Montelukast Sodium With Concomitant Administration of Inhaled Budesonide in Asthmatic Patients (0476-075)
NCT00148408PHASE4COMPLETEDTrial of Asthma Patient Education (TAPE)
NCT00152984PHASE4COMPLETEDEfficacy and Safety of Tiotropium in Patients With COPD and Concomitant Diagnosis of Asthma
NCT00153075PHASE4COMPLETEDFlow Rate Effect Respimat Inhaler Versus a Metered Dose Inhaler Using Berodual in Patients With Chronic Obstructive Pulmonary Disease (COPD)
NCT00156819PHASE4COMPLETEDThe Leukotriene Modifier Or Corticosteroid or Corticosteroid-Salmeterol Trial
NCT00157937PHASE4COMPLETEDA Study to Compare Effectiveness of Montelukast Sodium With Comparator in Mild to Moderate Persistent Asthmatics (0476-329)

Drugs tested across these trials (top 30)

MoleculeMax phaseTrials referencing
MONTELUKAST4147
ALBUTEROL498
SALMETEROL480
FLUTICASONE PROPIONATE444
FORMOTEROL444
ARFORMOTEROL442
BUDESONIDE439
OMALIZUMAB435
VILANTEROL433
CICLESONIDE430
BECLOMETHASONE DIPROPIONATE427
FLUTICASONE FUROATE426
BENRALIZUMAB423
MEPOLIZUMAB422
DUPILUMAB421
THEOPHYLLINE ANHYDROUS421
LEVOSALBUTAMOL420
MOMETASONE FUROATE419
TIOTROPIUM418
TEZEPELUMAB416
INDACATEROL412
TERBUTALINE49
DARIFENACIN48
AZITHROMYCIN47
DEXAMETHASONE47
METHACHOLINE47
IPRATROPIUM BROMIDE46
PREDNISOLONE45
PREDNISONE45
RESLIZUMAB44