Attention deficit-hyperactivity disorder
diseaseOn this page
Also known as ADHDattention deficit hyperactivity disorderattention deficit/hyperactivity disorder
Summary
Attention deficit-hyperactivity disorder (MONDO:0007743) is a disease with 74 cohort genes (2,387 GWAS associations across 172 studies) and 1,257 clinical trials. The dominant Reactome pathway is TP53 Regulates Transcription of Death Receptors and Ligands (4 cohort genes). Top therapeutic interventions include atomoxetine, methylphenidate, and lisdexamfetamine.
At a glance
- Cohort genes: 74
- GWAS associations: 2,387
- ClinVar variants: 71
- Clinical trials: 1,257
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | attention deficit-hyperactivity disorder |
| Mondo ID | MONDO:0007743 |
| EFO | EFO:0003888 |
| NCIT | C97160 |
| UMLS | C1263846 |
| MedGen | 220387 |
| Is cancer (heuristic) | no |
Also known as: ADHD · attention deficit hyperactivity disorder · attention deficit-hyperactivity disorder · attention deficit/hyperactivity disorder
Data availability: 71 ClinVar variants · 2,387 GWAS associations (172 studies) · 1 GenCC gene-disease record · 35 cell lines.
Disease family
An umbrella term covering 3 Mondo subtypes.
Classification path: disease › human disease › disease by developmental or physiological process › psychiatric disorder › mental disorder › developmental disorder of mental health › specific developmental disorder › attention deficit-hyperactivity disorder
Related subtypes (9): fetal alcohol spectrum disorder, oppositional defiant disorder, fetal nicotine spectrum disorder, communication disorder, stereotypic movement disorder, tic disorder, learning disability, developmental coordination disorder, conduct disorder
Subtypes (3): attention deficit hyperactivity disorder, inattentive type, hereditary attention deficit-hyperactivity disorder, attention deficit-hyperactivity disorder 8
Genetics & variants
GWAS landscape
2,387 GWAS associations across 172 studies. Top hits map to 38 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs9919558 | 7e-59 | NCAM1 | T | 0.02 |
| rs266058 | 2e-38 | TMEM182 - CRLF3P1 | C | 0.02 |
| rs28606370 | 1e-33 | BORCS7-ASMT - CNNM2 | C | 0.01 |
| rs6452785 | 4e-32 | TMEM161B-DT | C | 0.01 |
| rs12907546 | 1e-31 | SEMA6D | G | 0.02 |
| rs1381287 | 8e-30 | LINC01550 - LINC02295 | C | 0.01 |
| rs458806 | 1e-29 | REV3L, MFSD4B | C | 0.02 |
| rs13217619 | 1e-27 | ZSCAN31 | ? | |
| rs2336895 | 2e-27 | TENM2 | G | 0.01 |
| rs4349886 | 2e-26 | SDK1 | C | 0.01 |
| rs1476535 | 3e-26 | FOXP2 | C | 0.01 |
| rs10427255 | 3e-26 | RPL6P5 - METAP2P1 | C | 0.01 |
| rs6265 | 2e-24 | BDNF-AS, BDNF | C | 0.01 |
| rs7675916 | 3e-24 | PCDH7 | C | 0.01 |
| rs12970816 | 3e-24 | DCC | G | 0.01 |
| rs72678859 | 2e-23 | RNU6-289P - RPL36AP23 | C | 0.02 |
| rs6460944 | 2e-23 | MAD1L1 | C | 0.01 |
| rs4240671 | 5e-23 | XKR6 | G | 0.01 |
| rs4074442 | 1e-22 | LINC01830 | G | 0.01 |
| rs2865303 | 2e-22 | LSAMP - IGSF11 | G | 0.01 |
| rs6711254 | 2e-22 | LINC01875 - TMEM18 | G | 0.01 |
| rs72780741 | 3e-22 | NIHCOLE - RNU6-334P | C | 0.01 |
| rs11596214 | 6e-21 | SORCS3 | G | 0.01 |
| rs2272168 | 3e-20 | ZKSCAN5 | G | 0.01 |
| rs7942417 | 5e-20 | METTL15 - LINC02758 | C | 0.01 |
| rs4298967 | 8e-20 | CACNA1C, CACNA1C-IT3 | ? | |
| rs10001365 | 3e-19 | TTC29 | G | 0.01 |
| rs10787738 | 3e-19 | SHTN1 | C | 0.01 |
| rs59724122 | 4e-19 | GULOP | C | 0.01 |
| rs1899896 | 4e-19 | RUNX1T1 - FLJ46284 | C | 0.01 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST008919 | Zhu Z | 2019 | 46,802 | 381,675 | Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis. |
| GCST007777 | Schork AJ | 2019 | 46,008 | 19,526 | A genome-wide association study of shared risk across psychiatric disorders implicates gene regulation during fetal neurodevelopment. |
| GCST008417 | Demontis D | 2019 | 35,006 | 16,366 | Genome-wide association study implicates CHRNA2 in cannabis use disorder. |
| GCST008416 | Demontis D | 2019 | 32,716 | 16,269 | Genome-wide association study implicates CHRNA2 in cannabis use disorder. |
| GCST007582 | Klein M | 2019 | 19,099 | 34,194 | Genetic Markers of ADHD-Related Variations in Intracranial Volume. |
| GCST007583 | Klein M | 2019 | 19,099 | 34,194 | Genetic Markers of ADHD-Related Variations in Intracranial Volume. |
| GCST007584 | Klein M | 2019 | 19,099 | 34,194 | Genetic Markers of ADHD-Related Variations in Intracranial Volume. |
| GCST007585 | Klein M | 2019 | 19,099 | 34,194 | Genetic Markers of ADHD-Related Variations in Intracranial Volume. |
| GCST007586 | Klein M | 2019 | 19,099 | 34,194 | Genetic Markers of ADHD-Related Variations in Intracranial Volume. |
| GCST007587 | Klein M | 2019 | 19,099 | 34,194 | Genetic Markers of ADHD-Related Variations in Intracranial Volume. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 1 |
| Tier 2: splice/UTR | 3 |
| Tier 3: regulatory | 3 |
| Tier 4: intronic/intergenic | 43 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 50 |
| low_freq (0.01-0.05) | 0 |
| rare (<0.01) | 0 |
| unknown | 0 |
Functional consequences
| Consequence | Count |
|---|---|
| intron_variant | 37 |
| intergenic_variant | 4 |
| non_coding_transcript_exon_variant | 2 |
| 3_prime_UTR_variant | 2 |
| regulatory_region_variant | 2 |
| missense_variant | 1 |
| 5_prime_UTR_variant | 1 |
| TF_binding_site_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| rs9919558 | 11 | 113006687 | T>A,G | 0.387 | intron_variant | NCAM1 | 7e-59 | Tier 4: intronic/intergenic |
| rs266058 | 2 | 103469970 | C>A,G,T | 0.472 | intron_variant | TMEM182 - CRLF3P1 | 2e-38 | Tier 4: intronic/intergenic |
| rs28606370 | 10 | 102911075 | C>A | 0.338 | intron_variant | BORCS7-ASMT - CNNM2 | 1e-33 | Tier 4: intronic/intergenic |
| rs6452785 | 5 | 88389683 | C>G,T | 0.468 | intron_variant | TMEM161B-DT | 4e-32 | Tier 4: intronic/intergenic |
| rs12907546 | 15 | 47392083 | G>A | 0.204 | intron_variant | SEMA6D | 1e-31 | Tier 4: intronic/intergenic |
| rs1381287 | 14 | 98131215 | C>T | 0.457 | intron_variant | LINC01550 - LINC02295 | 8e-30 | Tier 4: intronic/intergenic |
| rs458806 | 6 | 111354825 | C>G,T | 0.178 | intron_variant | REV3L, MFSD4B | 1e-29 | Tier 4: intronic/intergenic |
| rs13217619 | 6 | 28338894 | T>C | 0.05 | intron_variant | ZSCAN31 | 1e-27 | Tier 4: intronic/intergenic |
| rs2336895 | 5 | 167563690 | G>A | 0.352 | intron_variant | TENM2 | 2e-27 | Tier 4: intronic/intergenic |
| rs4349886 | 7 | 3330406 | C>A,T | 0.462 | intron_variant | SDK1 | 2e-26 | Tier 4: intronic/intergenic |
| rs1476535 | 7 | 114430980 | C>A,G,T | 0.451 | intron_variant | FOXP2 | 3e-26 | Tier 4: intronic/intergenic |
| rs10427255 | 2 | 145367955 | C>T | 0.473 | intergenic_variant | RPL6P5 - METAP2P1 | 3e-26 | Tier 4: intronic/intergenic |
| rs6265 | 11 | 27658369 | C>A,G,T | 0.186 | missense_variant | BDNF-AS, BDNF | 2e-24 | Tier 1: coding |
| rs7675916 | 4 | 31142196 | C>T | 0.287 | intron_variant | PCDH7 | 3e-24 | Tier 4: intronic/intergenic |
| rs12970816 | 18 | 52497489 | G>A | 0.402 | intron_variant | DCC | 3e-24 | Tier 4: intronic/intergenic |
| rs72678859 | 4 | 111485805 | C>T | 0.167 | intergenic_variant | RNU6-289P - RPL36AP23 | 2e-23 | Tier 4: intronic/intergenic |
| rs6460944 | 7 | 1836563 | C>G,T | 0.408 | intron_variant | MAD1L1 | 2e-23 | Tier 4: intronic/intergenic |
| rs4240671 | 8 | 10910238 | G>A | 0.491 | intron_variant | XKR6 | 5e-23 | Tier 4: intronic/intergenic |
| rs4074442 | 2 | 22331242 | G>A,C | 0.397 | intron_variant | LINC01830 | 1e-22 | Tier 4: intronic/intergenic |
| rs2865303 | 3 | 118074139 | G>A,C,T | 0.15 | intron_variant | LSAMP - IGSF11 | 2e-22 | Tier 4: intronic/intergenic |
| rs6711254 | 2 | 624210 | G>A,T | 0.173 | non_coding_transcript_exon_variant | LINC01875 - TMEM18 | 2e-22 | Tier 4: intronic/intergenic |
| rs72780741 | 5 | 104592616 | C>A | 0.171 | intron_variant | NIHCOLE - RNU6-334P | 3e-22 | Tier 4: intronic/intergenic |
| rs11596214 | 10 | 104694074 | G>A,C | 0.394 | intron_variant | SORCS3 | 6e-21 | Tier 4: intronic/intergenic |
| rs2272168 | 7 | 99505154 | G>A,C,T | 0.157 | 5_prime_UTR_variant | ZKSCAN5 | 3e-20 | Tier 2: splice/UTR |
| rs7942417 | 11 | 28634687 | C>A,G,T | 0.346 | intergenic_variant | METTL15 - LINC02758 | 5e-20 | Tier 4: intronic/intergenic |
| rs4298967 | 12 | 2299028 | A>C,G,T | 0.05 | intron_variant | CACNA1C, CACNA1C-IT3 | 8e-20 | Tier 4: intronic/intergenic |
| rs10001365 | 4 | 146876062 | G>A,T | 0.386 | intron_variant | TTC29 | 3e-19 | Tier 4: intronic/intergenic |
| rs10787738 | 10 | 117017860 | C>T | 0.262 | TF_binding_site_variant | SHTN1 | 3e-19 | Tier 3: regulatory |
| rs59724122 | 8 | 27567179 | C>T | 0.169 | intron_variant | GULOP | 4e-19 | Tier 4: intronic/intergenic |
| rs1899896 | 8 | 92188808 | C>T | 0.299 | intergenic_variant | RUNX1T1 - FLJ46284 | 4e-19 | Tier 4: intronic/intergenic |
ClinVar germline variants
71 retrieved; paginated sample, class counts are floors:
35 uncertain significance, 20 pathogenic, 11 likely pathogenic, 1 association, 1 benign/likely benign, 1 pathogenic/likely pathogenic, 1 conflicting classifications of pathogenicity, 1 association; risk factor
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 267850 | 46;XY;t(8;10)(q13;p13)dn | Pathogenic | criteria provided, single submitter | |
| 267882 | 46;XX;inv(7)(q11.23q36.3)dn | Pathogenic | criteria provided, single submitter | |
| 267902 | 46;XY;t(3;5)(q24;p15.3)dn | Pathogenic | criteria provided, single submitter | |
| 267937 | 46;XY;t(5;15)(q11.2;q24) | Pathogenic | criteria provided, single submitter | |
| 268039 | 46;XY;t(3;18)(q13.31;q22.1)dn | Pathogenic | criteria provided, single submitter | |
| 1330165 | GRCh37/hg19 3q23-25.32(chr3:142729607-157921084)x3 | AADAC | Pathogenic | criteria provided, single submitter |
| 1700599 | NM_014921.5(ADGRL1):c.2998T>C (p.Trp1000Arg) | ADGRL1 | Pathogenic | criteria provided, single submitter |
| 1700604 | NM_014921.5(ADGRL1):c.3476C>T (p.Ser1159Phe) | ADGRL1 | Pathogenic | criteria provided, single submitter |
| 1700605 | NM_014921.5(ADGRL1):c.2049dup (p.Glu684fs) | ADGRL1 | Pathogenic | criteria provided, single submitter |
| 1700602 | NM_014921.5(ADGRL1):c.819G>A (p.Trp273Ter) | ADGRL1-AS1 | Pathogenic | criteria provided, single submitter |
| 523274 | GRCh37/hg19 22q11.21(chr22:18894835-21505417) | ARVCF | Pathogenic | criteria provided, single submitter |
| 242885 | NM_138425.4(C12orf57):c.53-2A>G | C12orf57 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 183276 | NM_020374.4(FERRY3):c.639_640insACAA (p.Gln214fs) | FERRY3 | Pathogenic/Likely pathogenic | no assertion criteria provided |
| 254029 | NM_016194.4(GNB5):c.368C>T (p.Ser123Leu) | GNB5 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 3238952 | GRCh38/hg38 3q27.1-27.2(chr3:183020090-185760128)x1 | LOC129938037 | Pathogenic | criteria provided, single submitter |
| 638688 | NM_005909.5(MAP1B):c.5368C>T (p.Arg1790Ter) | MAP1B | Pathogenic | criteria provided, single submitter |
| 189665 | NM_001110792.2(MECP2):c.1200_1220delinsCTGAGCCCCAGGACTTGAGCA (p.Pro401_Ser407delinsTer) | MECP2 | Pathogenic | criteria provided, single submitter |
| 417685 | NM_020843.3(SCAPER):c.2973_2976del (p.Ile991Metfs) | SCAPER | Pathogenic | criteria provided, single submitter |
| 590780 | NM_001378418.1(TCF20):c.5725C>T (p.His1909Tyr) | TCF20 | Pathogenic | criteria provided, single submitter |
| 523259 | GRCh37/hg19 17p12(chr17:14215739-15422582) | TVP23C | Pathogenic | criteria provided, single submitter |
| 56645 | NM_152564.5(VPS13B):c.1219C>T (p.Gln407Ter) | VPS13B | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 267834 | 46;X;t(Y;16)(q11.23;p11.2);t(6;21)(p21.3;p13)dn | Likely pathogenic | criteria provided, single submitter | |
| 267875 | 46;XX;t(10;14)(p13;q21)dn | Likely pathogenic | criteria provided, single submitter | |
| 1700603 | NM_014921.5(ADGRL1):c.26G>A (p.Trp9Ter) | ADGRL1 | Likely pathogenic | criteria provided, single submitter |
| 183350 | NM_005441.3(CHAF1B):c.496A>G (p.Ile166Val) | CHAF1B | Likely pathogenic | no assertion criteria provided |
| 242891 | NM_004521.3(KIF5B):c.2252A>G (p.His751Arg) | KIF5B | Likely pathogenic | no assertion criteria provided |
| 242888 | NM_177433.3(MAGED2):c.1003del (p.Gln335fs) | MAGED2 | Likely pathogenic | no assertion criteria provided |
| 9733 | NC_012920.1(MT-ND1):m.3697G>A | MT-ND1 | Likely pathogenic | reviewed by expert panel |
| 3233357 | NM_001035006.5(RPL17):c.452del (p.Thr151fs) | RPL17 | Likely pathogenic | criteria provided, single submitter |
| 932939 | NM_006593.4(TBR1):c.553C>T (p.Gln185Ter) | TBR1 | Likely pathogenic | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 71 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 5
Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)
| Gene | HGNC | Evidence routes |
|---|---|---|
| TCF20 | TCF20 | GWAS, Orphanet |
| CSMD2 | CSMD2 | GWAS |
| MARK2 | MARK2 | GWAS |
| MAP1B | MAP1B | GWAS, Orphanet |
| UPF1 | UPF1 | GWAS, Orphanet |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| TCF20 | Orphanet:528084 | Non-specific syndromic intellectual disability |
| MAP1B | Orphanet:90635 | Rare autosomal dominant non-syndromic sensorineural deafness type DFNA |
| MAP1B | Orphanet:98892 | Periventricular nodular heterotopia |
| UPF1 | Orphanet:528084 | Non-specific syndromic intellectual disability |
| CNNM2 | Orphanet:620363 | Primary hypomagnesemia-generalized seizures-intellectual disability-obesity syndrome |
| CNNM4 | Orphanet:1873 | Jalili syndrome |
| ATXN7 | Orphanet:94147 | Spinocerebellar ataxia type 7 |
| SEMA3A | Orphanet:130 | Brugada syndrome |
| SEMA3A | Orphanet:478 | Kallmann syndrome |
| BMPR1B | Orphanet:2098 | Acromesomelic dysplasia, Grebe type |
| BMPR1B | Orphanet:2639 | Fibular aplasia-complex brachydactyly syndrome |
| BMPR1B | Orphanet:93384 | Brachydactyly type C |
| BMPR1B | Orphanet:93388 | Brachydactyly type A1 |
| BMPR1B | Orphanet:93396 | Brachydactyly type A2 |
| SEM1 | Orphanet:2440 | Isolated split hand-split foot malformation |
| ST3GAL3 | Orphanet:697734 | ST3GAL3-CDG |
| BRAF | Orphanet:1340 | Cardiofaciocutaneous syndrome |
| BRAF | Orphanet:146 | Differentiated thyroid carcinoma |
| BRAF | Orphanet:251615 | Pilomyxoid astrocytoma |
| BRAF | Orphanet:389 | Langerhans cell histiocytosis |
| BRAF | Orphanet:500 | Noonan syndrome with multiple lentigines |
| BRAF | Orphanet:54595 | Craniopharyngioma |
| BRAF | Orphanet:58017 | Classic hairy cell leukemia |
| BRAF | Orphanet:626 | Large/giant congenital melanocytic nevus |
| BRAF | Orphanet:648 | Noonan syndrome |
| BRAF | Orphanet:840 | Syringocystadenoma papilliferum |
| BRAF | Orphanet:96253 | Cushing disease |
| SLC6A9 | Orphanet:289860 | Infantile glycine encephalopathy |
| SLC6A9 | Orphanet:289863 | Atypical glycine encephalopathy |
| SMARCA2 | Orphanet:3051 | Nicolaides-Baraitser syndrome |
| SMARCA2 | Orphanet:637013 | SMARCA2-related blepharophimosis-intellectual disability syndrome |
| SOX5 | Orphanet:313884 | 12p12.1 microdeletion syndrome |
| SOX5 | Orphanet:313892 | Developmental and speech delay due to SOX5 deficiency |
| SOX5 | Orphanet:626 | Large/giant congenital melanocytic nevus |
| STIM1 | Orphanet:2593 | Tubular aggregate myopathy |
| STIM1 | Orphanet:317430 | Combined immunodeficiency due to STIM1 deficiency |
| STIM1 | Orphanet:3204 | Stormorken-Sjaastad-Langslet syndrome |
| TBR1 | Orphanet:1617 | Developmental delay-language impairment-dopa responsive dystonia-parkinsonism syndrome due to 2q24 microdeletion |
| TBR1 | Orphanet:528084 | Non-specific syndromic intellectual disability |
| TCF4 | Orphanet:171 | Primary sclerosing cholangitis |
| TCF4 | Orphanet:178469 | Autosomal dominant non-syndromic intellectual disability |
| TCF4 | Orphanet:2896 | Pitt-Hopkins syndrome |
| TCF4 | Orphanet:98974 | Fuchs endothelial corneal dystrophy |
| TFAP2B | Orphanet:46627 | Char syndrome |
| TFAP2B | Orphanet:466729 | Familial patent arterial duct |
| TFEB | Orphanet:319308 | MiT family translocation renal cell carcinoma |
| FERRY3 | Orphanet:88616 | Autosomal recessive non-syndromic intellectual disability |
| YWHAZ | Orphanet:178469 | Autosomal dominant non-syndromic intellectual disability |
| SCAPER | Orphanet:110 | Bardet-Biedl syndrome |
| SCAPER | Orphanet:791 | Retinitis pigmentosa |
Cohort genes → proteins
74 cohort genes, 73 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 61 |
| gwas_and_clinvar | 5 |
| multi_evidence | 8 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| TCF20 | HGNC:11631 | ENSG00000100207 | Q9UGU0 | Transcription factor 20 | gwas,clinvar |
| CSMD2 | HGNC:19290 | ENSG00000121904 | Q7Z408 | CUB and sushi domain-containing protein 2 | gwas,clinvar |
| MARK2 | HGNC:3332 | ENSG00000072518 | Q7KZI7 | Serine/threonine-protein kinase MARK2 | gwas,clinvar |
| MAP1B | HGNC:6836 | ENSG00000131711 | P46821 | Microtubule-associated protein 1B | gwas,clinvar |
| UPF1 | HGNC:9962 | ENSG00000005007 | Q92900 | Regulator of nonsense transcripts 1 | gwas,clinvar |
| RGS6 | HGNC:10002 | ENSG00000182732 | P49758 | Regulator of G-protein signaling 6 | gwas |
| CNNM2 | HGNC:103 | ENSG00000148842 | Q9H8M5 | Metal transporter CNNM2 | gwas |
| RPL17 | HGNC:10307 | ENSG00000265681 | P18621 | Large ribosomal subunit protein uL22 | clinvar |
| RPL23 | HGNC:10316 | ENSG00000125691 | P62829 | Large ribosomal subunit protein uL14 | clinvar |
| RTN1 | HGNC:10467 | ENSG00000139970 | Q16799 | Reticulon-1 | gwas |
| RXRG | HGNC:10479 | ENSG00000143171 | P48443 | Retinoic acid receptor RXR-gamma | gwas |
| CNNM4 | HGNC:105 | ENSG00000158158 | Q6P4Q7 | Metal transporter CNNM4 | gwas |
| ATXN7 | HGNC:10560 | ENSG00000163635 | O15265 | Ataxin-7 | gwas |
| SEMA3A | HGNC:10723 | ENSG00000075213 | Q14563 | Semaphorin-3A | gwas |
| BMPR1B | HGNC:1077 | ENSG00000138696 | O00238 | Bone morphogenetic protein receptor type-1B | gwas |
| SEM1 | HGNC:10845 | ENSG00000127922 | P60896 | 26S proteasome complex subunit SEM1 | gwas |
| SHMT2 | HGNC:10852 | ENSG00000182199 | P34897 | Serine hydroxymethyltransferase, mitochondrial | gwas |
| ST3GAL3 | HGNC:10866 | ENSG00000126091 | Q11203 | CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase | gwas |
| BRAF | HGNC:1097 | ENSG00000157764 | P15056 | Serine/threonine-protein kinase B-raf | gwas |
| SLC6A9 | HGNC:11056 | ENSG00000196517 | P48067 | Sodium- and chloride-dependent glycine transporter 1 | gwas |
| SMARCA2 | HGNC:11098 | ENSG00000080503 | P51531 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 | gwas |
| SOX5 | HGNC:11201 | ENSG00000134532 | P35711 | Transcription factor SOX-5 | gwas |
| SP4 | HGNC:11209 | ENSG00000105866 | Q02446 | Transcription factor Sp4 | clinvar |
| SRPK2 | HGNC:11306 | ENSG00000135250 | P78362 | SRSF protein kinase 2 | gwas |
| STIM1 | HGNC:11386 | ENSG00000167323 | Q13586 | Stromal interaction molecule 1 | gwas |
| STIP1 | HGNC:11387 | ENSG00000168439 | P31948 | Stress-induced-phosphoprotein 1 | gwas |
| SUPT3H | HGNC:11466 | ENSG00000196284 | O75486 | Transcription initiation protein SPT3 homolog | gwas |
| TBR1 | HGNC:11590 | ENSG00000136535 | Q16650 | T-box brain protein 1 | clinvar |
| ELOC | HGNC:11617 | ENSG00000154582 | Q15369 | Elongin-C | gwas |
| TCF4 | HGNC:11634 | ENSG00000196628 | P15884 | Transcription factor 4 | gwas |
| DAGLA | HGNC:1165 | ENSG00000134780 | Q9Y4D2 | Diacylglycerol lipase-alpha | clinvar |
| ELP4 | HGNC:1171 | ENSG00000109911 | Q96EB1 | Elongator complex protein 4 | gwas |
| TFAP2B | HGNC:11743 | ENSG00000008196 | Q92481 | Transcription factor AP-2-beta | gwas |
| TFEB | HGNC:11753 | ENSG00000112561 | P19484 | Transcription factor EB | gwas |
| FERRY3 | HGNC:1184 | ENSG00000047621 | Q9NQ89 | Ferry endosomal RAB5 effector complex subunit 3 | clinvar |
| TLL2 | HGNC:11844 | ENSG00000095587 | Q9Y6L7 | Tolloid-like protein 2 | gwas |
| TNFRSF10A | HGNC:11904 | ENSG00000104689 | O00220 | Tumor necrosis factor receptor superfamily member 10A | gwas |
| TNFRSF10D | HGNC:11907 | ENSG00000173530 | Q9UBN6 | Tumor necrosis factor receptor superfamily member 10D | gwas |
| TNR | HGNC:11953 | ENSG00000116147 | Q92752 | Tenascin-R | gwas |
| UBE2D3 | HGNC:12476 | ENSG00000109332 | P61077 | Ubiquitin-conjugating enzyme E2 D3 | gwas |
| UGT1A9 | HGNC:12541 | ENSG00000241119 | O60656 | UDP-glucuronosyltransferase 1A9 | gwas |
| UNC5B | HGNC:12568 | ENSG00000107731 | Q8IZJ1 | Netrin receptor UNC5B | gwas |
| VAV1 | HGNC:12657 | ENSG00000141968 | P15498 | Proto-oncogene vav | clinvar |
| MIR99AHG | HGNC:1274 | ENSG00000215386 | mir-99a-let-7c cluster host gene | gwas | |
| YWHAZ | HGNC:12855 | ENSG00000164924 | P63104 | 14-3-3 protein zeta/delta | gwas |
| SCAPER | HGNC:13081 | ENSG00000140386 | Q9BY12 | S phase cyclin A-associated protein in the endoplasmic reticulum | clinvar |
| BCL11A | HGNC:13221 | ENSG00000119866 | Q9H165 | BCL11 transcription factor A | gwas |
| BCL11B | HGNC:13222 | ENSG00000127152 | Q9C0K0 | B-cell lymphoma/leukemia 11B | gwas |
| SLC30A9 | HGNC:1329 | ENSG00000014824 | Q6PML9 | Proton-coupled zinc antiporter SLC30A9, mitochondrial | gwas |
| FAM53C | HGNC:1336 | ENSG00000120709 | Q9NYF3 | Protein FAM53C | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| TCF20 | Transcription factor 20 | Transcriptional activator that binds to the regulatory region of MMP3 and thereby controls stromelysin expression. |
| MARK2 | Serine/threonine-protein kinase MARK2 | Serine/threonine-protein kinase. |
| MAP1B | Microtubule-associated protein 1B | Facilitates tyrosination of alpha-tubulin in neuronal microtubules. |
| UPF1 | Regulator of nonsense transcripts 1 | RNA-dependent helicase required for nonsense-mediated decay (NMD) of aberrant mRNAs containing premature stop codons and modulates the expression level of normal mRNAs. |
| RGS6 | Regulator of G-protein signaling 6 | Regulates G protein-coupled receptor signaling cascades. |
| CNNM2 | Metal transporter CNNM2 | Divalent metal cation transporter. |
| RPL17 | Large ribosomal subunit protein uL22 | Component of the large ribosomal subunit. |
| RPL23 | Large ribosomal subunit protein uL14 | Component of the large ribosomal subunit. |
| RTN1 | Reticulon-1 | Inhibits amyloid precursor protein processing, probably by blocking BACE1 activity. |
| RXRG | Retinoic acid receptor RXR-gamma | Receptor for retinoic acid. |
| CNNM4 | Metal transporter CNNM4 | Probable metal transporter. |
| ATXN7 | Ataxin-7 | Acts as a component of the SAGA (aka STAGA) transcription coactivator-HAT complex. |
| SEMA3A | Semaphorin-3A | Involved in the development of the olfactory system and in neuronal control of puberty. |
| BMPR1B | Bone morphogenetic protein receptor type-1B | On ligand binding, forms a receptor complex consisting of two type II and two type I transmembrane serine/threonine kinases. |
| SEM1 | 26S proteasome complex subunit SEM1 | Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. |
| SHMT2 | Serine hydroxymethyltransferase, mitochondrial | Catalyzes the cleavage of serine to glycine accompanied with the production of 5,10-methylenetetrahydrofolate, an essential intermediate for purine biosynthesis. |
| ST3GAL3 | CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase | Catalyzes the formation of the NeuAc-alpha-2,3-Gal-beta-1,4-GlcNAc-, NeuAc-alpha-2,3-Gal-beta-1,3-GlcNAc- and NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc- sequences found in terminal carbohydrate groups of glycoproteins and glycolipids. |
| BRAF | Serine/threonine-protein kinase B-raf | Protein kinase involved in the transduction of mitogenic signals from the cell membrane to the nucleus. |
| SLC6A9 | Sodium- and chloride-dependent glycine transporter 1 | Sodium- and chloride-dependent glycine transporter. |
| SMARCA2 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 | ATPase involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). |
| SOX5 | Transcription factor SOX-5 | Transcription factor involved in chondrocytes differentiation and cartilage formation. |
| SP4 | Transcription factor Sp4 | Binds to GT and GC boxes promoters elements. |
| SRPK2 | SRSF protein kinase 2 | Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splici… |
| STIM1 | Stromal interaction molecule 1 | Acts as a Ca(2+) sensor that gates two major inward rectifying Ca(2+) channels at the plasma membrane: Ca(2+) release-activated Ca(2+) (CRAC) channels and arachidonate-regulated Ca(2+)-selective (ARC) channels. |
| STIP1 | Stress-induced-phosphoprotein 1 | Acts as a co-chaperone for HSP90AA1. |
| SUPT3H | Transcription initiation protein SPT3 homolog | Probable transcriptional activator. |
| TBR1 | T-box brain protein 1 | Transcriptional repressor involved in multiple aspects of cortical development, including neuronal migration, laminar and areal identity, and axonal projection. |
| ELOC | Elongin-C | SIII, also known as elongin, is a general transcription elongation factor that increases the RNA polymerase II transcription elongation past template-encoded arresting sites. |
| TCF4 | Transcription factor 4 | Transcription factor that binds to the immunoglobulin enhancer Mu-E5/KE5-motif. |
| DAGLA | Diacylglycerol lipase-alpha | Serine hydrolase that hydrolyzes arachidonic acid-esterified diacylglycerols (DAGs) to produce the principal endocannabinoid, 2-arachidonoylglycerol (2-AG). |
| ELP4 | Elongator complex protein 4 | Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). |
| TFAP2B | Transcription factor AP-2-beta | Sequence-specific DNA-binding protein that interacts with inducible viral and cellular enhancer elements to regulate transcription of selected genes. |
| TFEB | Transcription factor EB | Transcription factor that acts as a master regulator of lysosomal biogenesis, autophagy, lysosomal exocytosis, lipid catabolism, energy metabolism and immune response. |
| FERRY3 | Ferry endosomal RAB5 effector complex subunit 3 | Component of the FERRY complex (Five-subunit Endosomal Rab5 and RNA/ribosome intermediary). |
| TLL2 | Tolloid-like protein 2 | Protease which specifically processes pro-lysyl oxidase. |
| TNFRSF10A | Tumor necrosis factor receptor superfamily member 10A | Receptor for the cytotoxic ligand TNFSF10/TRAIL. |
| TNFRSF10D | Tumor necrosis factor receptor superfamily member 10D | Receptor for the cytotoxic ligand TRAIL. |
| TNR | Tenascin-R | Neural extracellular matrix (ECM) protein involved in interactions with different cells and matrix components. |
| UBE2D3 | Ubiquitin-conjugating enzyme E2 D3 | Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. |
| UGT1A9 | UDP-glucuronosyltransferase 1A9 | UDP-glucuronosyltransferase (UGT) that catalyzes phase II biotransformation reactions in which lipophilic substrates are conjugated with glucuronic acid to increase the metabolite’s water solubility, thereby facilitating excretion into eit… |
| UNC5B | Netrin receptor UNC5B | Receptor for netrin required for axon guidance. |
| VAV1 | Proto-oncogene vav | Couples tyrosine kinase signals with the activation of the Rho/Rac GTPases, thus leading to cell differentiation and/or proliferation. |
| YWHAZ | 14-3-3 protein zeta/delta | Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. |
| SCAPER | S phase cyclin A-associated protein in the endoplasmic reticulum | CCNA2/CDK2 regulatory protein that transiently maintains CCNA2 in the cytoplasm. |
| BCL11A | BCL11 transcription factor A | Transcription factor. |
| BCL11B | B-cell lymphoma/leukemia 11B | Key regulator of both differentiation and survival of T-lymphocytes during thymocyte development in mammals. |
| SLC30A9 | Proton-coupled zinc antiporter SLC30A9, mitochondrial | Mitochondrial proton-coupled zinc ion antiporter mediating the export of zinc from the mitochondria and involved in zinc homeostasis, zinc mobilization as well as mitochondrial morphology and health. |
| KDM3B | Lysine-specific demethylase 3B | Histone demethylase that specifically demethylates ‘Lys-9’ of histone H3, thereby playing a central role in histone code. |
| PCLO | Protein piccolo | Scaffold protein of the presynaptic cytomatrix at the active zone (CAZ) which is the place in the synapse where neurotransmitter is released. |
| FOLH1B | Putative N-acetylated-alpha-linked acidic dipeptidase | Has both folate hydrolase and N-acetylated-alpha-linked-acidic dipeptidase (NAALADase) activity. |
Protein-family classification
Druggable: 25 · Difficult: 17 · Unknown: 32 · Druggable fraction: 0.34
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Complement | 2 | 7.2× | 0.324 |
| Transcription factor | 14 | 1.6× | 0.324 |
| Nuclear receptor | 1 | 5.2× | 0.385 |
| Ion channel | 2 | 3.0× | 0.385 |
| Enzyme (other) | 9 | 1.5× | 0.385 |
| Kinase | 4 | 1.5× | 0.509 |
| Protease | 3 | 1.5× | 0.517 |
| Antibody/Immunoglobulin | 3 | 1.2× | 0.643 |
| Other/Unknown | 32 | 0.8× | 0.989 |
| Scaffold/PPI | 3 | 0.7× | 0.989 |
| GPCR | 1 | 0.3× | 0.989 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| TCF20 | Transcription factor | no | Znf_PHD, Znf_RING/FYVE/PHD, EPHD | |
| CSMD2 | Complement | yes | Sushi_SCR_CCP_dom, CUB_dom, Sperma_CUB_dom_sf | |
| MARK2 | Kinase | yes | Prot_kinase_dom, KA1_dom, Ser/Thr_kinase_AS | |
| MAP1B | Other/Unknown | no | MAP1B_neuraxin, MAP1, MAP1B/S_N | |
| UPF1 | Enzyme (other) | yes | 3.6.4.13 | Helicase/UvrB_N, UPF1_CH/ZBD, P-loop_NTPase |
| RGS6 | Other/Unknown | no | DEP_dom, G-protein_gamma-like_dom, RGS | |
| CNNM2 | Other/Unknown | no | CBS_dom, CNNM, RmlC-like_jellyroll | |
| RPL17 | Other/Unknown | no | Ribosomal_uL22, Ribosomal_uL22_euk_arc, Ribosomal_uL22_CS | |
| RPL23 | Other/Unknown | no | Ribosomal_uL14, Ribosomal_uL14_CS, Ribosomal_uL14_sf | |
| RTN1 | Other/Unknown | no | Reticulon, RTN1-4 | |
| RXRG | Nuclear receptor | yes | Retinoid-X_rcpt/HNF4, Nucl_hrmn_rcpt_lig-bd, Znf_hrmn_rcpt | |
| CNNM4 | Enzyme (other) | yes | 7.2.2.14 | cNMP-bd_dom, CBS_dom, CNNM |
| ATXN7 | Other/Unknown | no | SCA7_dom, Ataxin-7-like_regulator | |
| SEMA3A | Antibody/Immunoglobulin | yes | Semap_dom, Ig_sub, Ig-like_dom | |
| BMPR1B | Kinase | yes | 2.7.10.2 | TGFB_receptor, Activin_recp, Prot_kinase_dom |
| SEM1 | Other/Unknown | no | DSS1_SEM1, DUF5543 | |
| SHMT2 | Enzyme (other) | yes | 2.1.2.1 | Ser_HO-MeTrfase, PyrdxlP-dep_Trfase_major, PyrdxlP-dep_Trfase_small |
| ST3GAL3 | Enzyme (other) | yes | 2.4.99.2 | Glyco_trans_29, Sialyl_trans, GT29-like_sf |
| BRAF | Kinase | yes | 2.7.10.2 | Prot_kinase_dom, Ser-Thr/Tyr_kinase_cat_dom, PKC_DAG/PE |
| SLC6A9 | Other/Unknown | no | Na/ntran_symport, Na/ntran_symport_glycine_GLY1, SNS_sf | |
| SMARCA2 | Other/Unknown | no | SNF2_N, Bromodomain, Helicase_C-like | |
| SOX5 | Transcription factor | no | HMG_box_dom, HMG_box_dom_sf, SOX/SOX-like_TF | |
| SP4 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Sp4-like | |
| SRPK2 | Kinase | yes | Prot_kinase_dom, Ser/Thr_kinase_AS, Kinase-like_dom_sf | |
| STIM1 | Other/Unknown | no | SAM, SAM/pointed_sf, SOAR_STIM1/2 | |
| STIP1 | Other/Unknown | no | STI1_HS-bd, TPR-like_helical_dom_sf, TPR_2 | |
| SUPT3H | Other/Unknown | no | TFIID_TAF13, Histone-fold | |
| TBR1 | Transcription factor | no | TF_T-box, p53-like_TF_DNA-bd_sf, TF_T-box_CS | |
| ELOC | Other/Unknown | no | SKP1-like, SKP1/BTB/POZ_sf, Skp1_comp_POZ | |
| TCF4 | Transcription factor | no | 7.6.2.3 | bHLH_dom, HLH_DNA-bd_sf, NeuroDiff_E-box_TFs |
| DAGLA | Enzyme (other) | yes | 3.1.1.116 | Fungal_lipase-type, AB_hydrolase_fold, DAG_Lipase-Related |
| ELP4 | Other/Unknown | no | Elongator_complex_protein_4, P-loop_NTPase | |
| TFAP2B | Transcription factor | no | TF_AP2, TF_AP2_beta, TF_AP2_C | |
| TFEB | Transcription factor | no | bHLH_dom, MiT/TFE_C, bHLHzip_TFEB | |
| FERRY3 | Other/Unknown | no | Fy-3 | |
| TLL2 | Protease | yes | EGF-type_Asp/Asn_hydroxyl_site, EGF, CUB_dom | |
| TNFRSF10A | Other/Unknown | no | Death_dom, TNFR/NGFR_Cys_rich_reg, DEATH-like_dom_sf | |
| TNFRSF10D | Other/Unknown | no | TNFR/NGFR_Cys_rich_reg, TNFR_10, TNFRSF10_N | |
| TNR | Antibody/Immunoglobulin | yes | EGF, Fibrinogen_a/b/g_C_dom, FN3_dom | |
| UBE2D3 | Enzyme (other) | yes | 2.3.2.23 | UBC, UBQ-conjugating_enzyme/RWD, UBQ-conjugating_AS |
| UGT1A9 | Enzyme (other) | yes | 2.4.1.17 | UDP_glucos_trans, UDP_glycos_trans_CS, UDP-glycosyltransferase |
| UNC5B | Antibody/Immunoglobulin | yes | Death_dom, TSP1_rpt, ZU5_dom | |
| VAV1 | Scaffold/PPI | no | DH_dom, SH2, GDS_CDC24_CS | |
| MIR99AHG | Other/Unknown | no | ||
| YWHAZ | Other/Unknown | no | 14-3-3, 14-3-3_CS, 14-3-3_domain | |
| SCAPER | Transcription factor | no | Matrin/U1-like-C_Znf_C2H2, Znf_C2H2_type, SCAPER_N | |
| BCL11A | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Dev/Hematopoietic_TF | |
| BCL11B | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Dev/Hematopoietic_TF | |
| SLC30A9 | Other/Unknown | no | Cation_efflux, DNA-bd_dom_put_sf, Cation_efflux_TMD_sf | |
| FAM53C | Other/Unknown | no | FAM53 |
Expression context
Cohort genes with no expression data: 0.
67 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 1 |
| moderate (6-20) | 0 |
| broad (>20) | 73 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| cortical plate | 12 |
| calcaneal tendon | 9 |
| buccal mucosa cell | 7 |
| ganglionic eminence | 6 |
| ventricular zone | 6 |
| primordial germ cell in gonad | 6 |
| Brodmann (1909) area 23 | 5 |
| hindlimb stylopod muscle | 5 |
| sperm | 5 |
| middle temporal gyrus | 4 |
| sural nerve | 4 |
| oocyte | 4 |
| colonic epithelium | 4 |
| tendon of biceps brachii | 4 |
| gastrocnemius | 4 |
| primary visual cortex | 4 |
| endothelial cell | 3 |
| muscle of leg | 3 |
| mucosa of paranasal sinus | 3 |
| right lobe of liver | 3 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| TCF20 | 134 | ubiquitous | yes | cortical plate, ganglionic eminence, tonsil |
| CSMD2 | 166 | broad | marker | buccal mucosa cell, ventricular zone, kidney epithelium |
| MARK2 | 188 | ubiquitous | marker | lower esophagus mucosa, granulocyte, esophagus mucosa |
| MAP1B | 299 | ubiquitous | marker | lateral nuclear group of thalamus, substantia nigra pars compacta, substantia nigra pars reticulata |
| UPF1 | 262 | ubiquitous | marker | right hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex |
| RGS6 | 185 | broad | marker | cortical plate, sural nerve, middle temporal gyrus |
| CNNM2 | 234 | ubiquitous | marker | secondary oocyte, oocyte, right adrenal gland |
| RPL17 | 134 | ubiquitous | marker | left ovary, ovary, right ovary |
| RPL23 | 210 | ubiquitous | marker | ganglionic eminence, left ovary, right ovary |
| RTN1 | 270 | broad | marker | Brodmann (1909) area 23, endothelial cell, pons |
| RXRG | 170 | broad | marker | hindlimb stylopod muscle, adenohypophysis, muscle of leg |
| CNNM4 | 189 | ubiquitous | marker | mucosa of transverse colon, rectum, ileal mucosa |
| ATXN7 | 290 | ubiquitous | marker | mucosa of paranasal sinus, jejunal mucosa, superficial temporal artery |
| SEMA3A | 194 | ubiquitous | marker | stromal cell of endometrium, cortical plate, colonic epithelium |
| BMPR1B | 239 | broad | marker | calcaneal tendon, bronchial epithelial cell, cauda epididymis |
| SEM1 | 285 | ubiquitous | marker | calcaneal tendon, tendon, tendon of biceps brachii |
| SHMT2 | 288 | ubiquitous | marker | tendon of biceps brachii, cartilage tissue, right lobe of liver |
| ST3GAL3 | 178 | ubiquitous | marker | hindlimb stylopod muscle, gastrocnemius, muscle of leg |
| BRAF | 265 | ubiquitous | marker | buccal mucosa cell, colonic epithelium, calcaneal tendon |
| SLC6A9 | 180 | ubiquitous | marker | C1 segment of cervical spinal cord, spinal cord, skin of leg |
| SMARCA2 | 301 | ubiquitous | marker | calcaneal tendon, colonic epithelium, cortical plate |
| SOX5 | 221 | ubiquitous | marker | cortical plate, calcaneal tendon, synovial joint |
| SP4 | 265 | ubiquitous | marker | cerebellar vermis, germinal epithelium of ovary, superficial temporal artery |
| SRPK2 | 293 | ubiquitous | marker | sperm, male germ cell, pons |
| STIM1 | 237 | ubiquitous | marker | gastrocnemius, muscle of leg, hindlimb stylopod muscle |
| STIP1 | 294 | ubiquitous | marker | adrenal tissue, left testis, ganglionic eminence |
| SUPT3H | 206 | ubiquitous | yes | primordial germ cell in gonad, sperm, male germ line stem cell (sensu Vertebrata) in testis |
| TBR1 | 58 | tissue_specific | marker | cortical plate, ganglionic eminence, Brodmann (1909) area 10 |
| ELOC | 293 | ubiquitous | marker | oocyte, sperm, heart right ventricle |
| TCF4 | 292 | ubiquitous | marker | endothelial cell, skin of hip, pericardium |
Protein interactions among cohort
Intra-cohort edges: 24.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| BRAF | 7,394 |
| RPL17 | 5,372 |
| SHMT2 | 5,293 |
| STIP1 | 5,243 |
| UPF1 | 4,936 |
| HDAC4 | 4,771 |
| SMARCA2 | 4,237 |
| ELOC | 4,044 |
| SRPK2 | 3,839 |
| MAP1B | 3,724 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ATXN7 | SUPT3H | intact |
| BCL11A | BCL11B | biogrid_interaction |
| BCL11B | FOXP2 | string_interaction |
| BCL11B | TBR1 | string_interaction |
| BRAF | YWHAZ | biogrid_interaction, intact |
| CACNA1C | CACNA1I | string_interaction |
| CACNA1C | CACNB2 | intact, string_interaction |
| CACNA1C | CSMD1 | string_interaction |
| CACNA1C | JPH2 | string_interaction |
| CACNA1C | STIM1 | string_interaction |
| CACNA1I | CACNB2 | string_interaction |
| CSMD1 | PCLO | string_interaction |
| FAM53C | KDM3B | string_interaction |
| FAM53C | YWHAZ | biogrid_interaction, intact |
| FBXL16 | MARK2 | intact |
| FOXP2 | SP4 | biogrid_interaction, intact |
| FOXP2 | TBR1 | string_interaction |
| HDAC4 | YWHAZ | intact |
| IMMP2L | SHMT2 | biogrid_interaction |
| MARK2 | PARD3B | biogrid_interaction |
| MARK2 | YWHAZ | intact |
| SOX5 | TBR1 | string_interaction |
| TFEB | YWHAZ | biogrid_interaction, intact |
| TFEB | ZKSCAN3 | string_interaction |
Structural data
PDB: 42 · AlphaFold-only: 31 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| ELOC | Q15369 | 225 |
| RPL17 | P18621 | 195 |
| RPL23 | P62829 | 190 |
| BRAF | P15056 | 131 |
| SEM1 | P60896 | 129 |
| MRPL33 | O75394 | 86 |
| YWHAZ | P63104 | 77 |
| UBE2D3 | P61077 | 45 |
| KDM3B | Q7LBC6 | 36 |
| CACNA1C | Q13936 | 33 |
| SMARCA2 | P51531 | 32 |
| SHMT2 | P34897 | 27 |
| HDAC4 | P56524 | 19 |
| BCL11A | Q9H165 | 17 |
| UPF1 | Q92900 | 12 |
| VAV1 | P15498 | 10 |
| SLC6A9 | P48067 | 9 |
| STIP1 | P31948 | 8 |
| CNNM2 | Q9H8M5 | 7 |
| STIM1 | Q13586 | 6 |
| MARK2 | Q7KZI7 | 5 |
| ATXN7 | O15265 | 5 |
| TCF4 | P15884 | 5 |
| SUPT3H | O75486 | 4 |
| TFEB | P19484 | 4 |
| CACNA1I | Q9P0X4 | 4 |
| SRPK2 | P78362 | 3 |
| CACNB2 | Q08289 | 3 |
| RXRG | P48443 | 2 |
| CNNM4 | Q6P4Q7 | 2 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| FOLH1B | Q9HBA9 | 96.69 |
| UGT1A9 | O60656 | 92.26 |
| ST3GAL3 | Q11203 | 90.87 |
| VPS45 | Q9NRW7 | 90.65 |
| IMMP2L | Q96T52 | 87.66 |
| OR14J1 | Q9UGF5 | 87.60 |
| FBXL16 | Q8N461 | 84.53 |
| SEMA3A | Q14563 | 84.50 |
| FERRY3 | Q9NQ89 | 84.04 |
| IFT81 | Q8WYA0 | 83.45 |
| TLL2 | Q9Y6L7 | 81.98 |
| UNC5B | Q8IZJ1 | 77.60 |
| ANO3 | Q9BYT9 | 76.30 |
| ELP4 | Q96EB1 | 74.49 |
| SLC4A10 | Q6U841 | 71.37 |
| ZSCAN31 | Q96LW9 | 67.96 |
| DAGLA | Q9Y4D2 | 63.87 |
| TNFRSF10D | Q9UBN6 | 60.71 |
| ZKSCAN3 | Q9BRR0 | 60.16 |
| SOX5 | P35711 | 58.95 |
| PMEPA1 | Q969W9 | 57.03 |
| TBR1 | Q16650 | 56.17 |
| PARD3B | Q8TEW8 | 55.56 |
| DLEU1 | O43261 | 55.08 |
| FAM53C | Q9NYF3 | 52.63 |
| BCL11B | Q9C0K0 | 51.76 |
| RTN1 | Q16799 | 48.88 |
| MAP1B | P46821 | 46.18 |
| SP4 | Q02446 | 39.58 |
| TCF20 | Q9UGU0 | 39.03 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 665. Enrichment computed across 250 evidence-associated genes (139 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 139 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| TP53 Regulates Transcription of Death Receptors and Ligands | 4 | 27.4× | 0.006 | TNFRSF10A, TNFRSF10D, PPP1R13B, TMEM219 |
| Late SARS-CoV-2 Infection Events | 5 | 10.5× | 0.034 | ST3GAL3, SRPK2, ANO3, ANO4, ANO5 |
| Induction of Cell-Cell Fusion | 3 | 19.0× | 0.102 | ANO3, ANO4, ANO5 |
| Highly sodium permeable postsynaptic acetylcholine nicotinic receptors | 2 | 23.5× | 0.389 | CHRNA3, CHRNB4 |
| TRAIL signaling | 2 | 20.5× | 0.389 | TNFRSF10A, TNFRSF10D |
| Netrin mediated repulsion signals | 2 | 18.3× | 0.389 | UNC5B, DCC |
| Highly calcium permeable nicotinic acetylcholine receptors | 2 | 18.3× | 0.389 | CHRNA3, CHRNB4 |
| Caspase activation via Dependence Receptors in the absence of ligand | 2 | 16.4× | 0.389 | UNC5B, DCC |
| Negative regulation of activity of TFAP2 (AP-2) family transcription factors | 2 | 16.4× | 0.389 | TFAP2B, TFAP2D |
| Highly calcium permeable postsynaptic nicotinic acetylcholine receptors | 2 | 14.9× | 0.389 | CHRNA3, CHRNB4 |
| Presynaptic nicotinic acetylcholine receptors | 2 | 13.7× | 0.389 | CHRNA3, CHRNB4 |
| Activation of the TFAP2 (AP-2) family of transcription factors | 2 | 13.7× | 0.389 | TFAP2B, TFAP2D |
| Formation of neuronal progenitor and neuronal BAF (npBAF and nBAF) | 3 | 9.9× | 0.389 | SMARCA2, BCL11A, BCL11B |
| Chromatin organization | 6 | 3.5× | 0.389 | ATXN7, SMARCA2, SUPT3H, KDM3B, KDM4A, KDM4D |
| SARS-CoV-2 Infection | 6 | 3.5× | 0.389 | ST3GAL3, SRPK2, YWHAZ, ANO3, ANO4, ANO5 |
| Transport of small molecules | 12 | 2.2× | 0.389 | SEM1, SLC6A9, SLC4A10, ANO3, SLC28A3, SLC9A9, SLC39A8, SLC5A9 (+4 more) |
| Defective CYP24A1 causes HCAI | 1 | 82.2× | 0.397 | CYP24A1 |
| Defective SLC9A9 causes autism 16 (AUTS16) | 1 | 82.2× | 0.397 | SLC9A9 |
| Acetylcholine binding and downstream events | 2 | 11.7× | 0.397 | CHRNA3, CHRNB4 |
| Postsynaptic nicotinic acetylcholine receptors | 2 | 11.7× | 0.397 | CHRNA3, CHRNB4 |
| Regulation of mRNA stability by proteins that bind AU-rich elements | 2 | 10.9× | 0.397 | SEM1, YWHAZ |
| Phase 2 - plateau phase | 2 | 10.9× | 0.397 | CACNA1C, CACNB2 |
| NCAM signaling for neurite out-growth | 3 | 5.9× | 0.397 | CACNA1C, CACNA1I, CACNB2 |
| Chromatin modifying enzymes | 6 | 3.1× | 0.397 | ATXN7, SMARCA2, SUPT3H, KDM3B, KDM4A, KDM4D |
| NCAM1 interactions | 3 | 5.4× | 0.487 | CACNA1C, CACNA1I, CACNB2 |
| Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors | 2 | 9.1× | 0.488 | TFAP2B, TFAP2D |
| Stimuli-sensing channels | 4 | 3.9× | 0.488 | ANO3, ANO4, SLC9B1, ANO5 |
| Modulation of host responses by IFN-stimulated genes | 2 | 8.7× | 0.504 | IFI44, IFI44L |
| Formation of the embryonic stem cell BAF (esBAF) complex | 2 | 8.7× | 0.504 | BCL11A, BCL11B |
| HDMs demethylate histones | 3 | 4.9× | 0.506 | KDM3B, KDM4A, KDM4D |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 231 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| neuron cell-cell adhesion | 4 | 17.2× | 0.085 | TNR, NLGN1, ASTN2, CNTN4 |
| calcium activated galactosylceramide scrambling | 2 | 48.6× | 0.168 | ANO3, ANO4 |
| membrane depolarization during atrial cardiac muscle cell action potential | 2 | 48.6× | 0.168 | CACNA1C, CACNB2 |
| synaptic transmission involved in micturition | 2 | 36.5× | 0.168 | CHRNA3, CHRNB4 |
| positive regulation of adenylate cyclase activity | 2 | 29.2× | 0.168 | STIM1, CACNA1C |
| calcium activated phosphatidylcholine scrambling | 2 | 29.2× | 0.168 | ANO3, ANO4 |
| membrane depolarization during AV node cell action potential | 2 | 29.2× | 0.168 | CACNA1C, CACNB2 |
| Golgi reassembly | 2 | 29.2× | 0.168 | YWHAZ, VPS13B |
| detection of mechanical stimulus | 3 | 15.6× | 0.168 | ANO3, PKD1L2, PKD1L3 |
| nucleus organization | 4 | 9.7× | 0.168 | ATXN7, SYNE1, WDR73, CFAP43 |
| monoatomic ion transmembrane transport | 6 | 5.4× | 0.168 | ANO3, CHRNA3, CHRNB4, ANO4, SLC9B1, ANO5 |
| neuron migration | 7 | 4.0× | 0.168 | MARK2, MAP1B, SEMA3A, ASTN2, CEP85L, KIRREL3, DCC |
| nervous system development | 13 | 2.6× | 0.168 | RXRG, SMARCA2, TCF4, TFAP2B, TNR, HDAC4, NLGN1, RBFOX1 (+5 more) |
| commitment of neuronal cell to specific neuron type in forebrain | 2 | 24.3× | 0.191 | TBR1, BCL11B |
| anterior/posterior axon guidance | 2 | 24.3× | 0.191 | UNC5B, DCC |
| brain development | 9 | 3.1× | 0.191 | RTN1, TBR1, IMMP2L, ARNT2, NEGR1, GSX1, CNTN4, CXCR4 (+1 more) |
| visual perception | 9 | 3.1× | 0.191 | CNNM4, ATXN7, SLC4A10, CACNB2, RIMS1, SPATA7, POU6F2, CRYBA1 (+1 more) |
| negative regulation of neuron projection development | 5 | 5.1× | 0.193 | SEMA3A, TNR, BCL11A, PRAG1, DCC |
| synaptic vesicle exocytosis | 3 | 9.9× | 0.193 | BRAF, PCLO, RIMS1 |
| regulation of neurotransmitter secretion | 3 | 9.9× | 0.193 | RIMS1, CHRNB4, MCTP2 |
| positive regulation of muscle contraction | 2 | 20.8× | 0.201 | CACNA1C, CACNB2 |
| positive regulation of transmission of nerve impulse | 2 | 20.8× | 0.201 | TNR, CHRNB4 |
| camera-type eye development | 4 | 6.2× | 0.201 | FOXP2, CACNA1C, FBN3, WDPCP |
| head morphogenesis | 2 | 18.2× | 0.229 | BRAF, VPS13B |
| negative regulation of dendrite development | 2 | 18.2× | 0.229 | BCL11A, DCC |
| postsynaptic modulation of chemical synaptic transmission | 3 | 8.8× | 0.229 | BRAF, SORCS3, DCC |
| specification of animal organ identity | 1 | 73.0× | 0.231 | TBR1 |
| regulation of acetylcholine secretion, neurotransmission | 1 | 73.0× | 0.231 | CHRNA3 |
| pyrimidine nucleoside transport | 1 | 73.0× | 0.231 | SLC28A3 |
| developmental maturation | 1 | 73.0× | 0.231 | MAP1B |
Therapeutics
Drugs indicated for this disease
18 approved, 12 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Acetylcarnitine | Approved (phase 4) |
| Amphetamine | Approved (phase 4) |
| Armodafinil | Approved (phase 4) |
| Atomoxetine | Approved (phase 4) |
| Caffeine | Approved (phase 4) |
| Dexmethylphenidate | Approved (phase 4) |
| Dextroamphetamine | Approved (phase 4) |
| Fipexide | Approved (phase 4) |
| Idebenone | Approved (phase 4) |
| Lisdexamfetamine | Approved (phase 4) |
| Methamphetamine | Approved (phase 4) |
| Methylphenidate | Approved (phase 4) |
| Modafinil | Approved (phase 4) |
| Pemoline | Approved (phase 4) |
| Piracetam | Approved (phase 4) |
| Pyritinol | Approved (phase 4) |
| Solriamfetol | Approved (phase 4) |
| Vinpocetine | Approved (phase 4) |
| Bupropion | Phase 3 (in late-stage trials) |
| Centanafadine | Phase 3 (in late-stage trials) |
| Citicoline | Phase 3 (in late-stage trials) |
| Clonidine | Phase 3 (in late-stage trials) |
| Dasotraline | Phase 3 (in late-stage trials) |
| Doconexent | Phase 3 (in late-stage trials) |
| Maritime Pine | Phase 3 (in late-stage trials) |
| Melatonin | Phase 3 (in late-stage trials) |
| Molindone | Phase 3 (in late-stage trials) |
| OMEGA-3 FATTY ACIDS | Phase 3 (in late-stage trials) |
| OMEGA-3-ACID ETHYL ESTERS | Phase 3 (in late-stage trials) |
| Zolpidem | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Amantadine, Ampreloxetine, Aripiprazole, Buspirone, Droxidopa, Duloxetine, Edivoxetine, Guanfacine, Lactose, Anhydrous, Levomefolic Acid, Mazindol, Oxiracetam, Pyridoxine, Quetiapine, Reboxetine, St. John’S Wort, Sucrose, Theanine, Vortioxetine.
Drug target analysis
Approved (phase 4): 17 · Phase ≥3: 17 · Phased (≥1): 19 · Undrugged: 55
Druggability breadth: 66 of 250 evidence-associated genes (26%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| MARK2 | MOMELOTINIB |
| RPL17 | GENTAMICIN SULFATE |
| RPL23 | GENTAMICIN SULFATE |
| RXRG | BEXAROTENE |
| BMPR1B | MOMELOTINIB |
| SEM1 | BORTEZOMIB |
| SHMT2 | OXAPROZIN |
| BRAF | VEMURAFENIB |
| SLC6A9 | GLYCINE |
| SRPK2 | FEDRATINIB |
| STIM1 | TERIFLUNOMIDE |
| DAGLA | ORLISTAT |
| UGT1A9 | DICLOFENAC |
| CACNA1C | REMIFENTANIL |
| CACNA1I | NIMODIPINE |
| CACNB2 | NIMODIPINE |
| HDAC4 | CELECOXIB |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| CACNA1C | 85 | 4 |
| BRAF | 48 | 4 |
| MARK2 | 45 | 4 |
| HDAC4 | 31 | 4 |
| BMPR1B | 28 | 4 |
| SRPK2 | 11 | 4 |
| SHMT2 | 7 | 4 |
| CACNA1I | 7 | 4 |
| RXRG | 6 | 4 |
| SLC6A9 | 6 | 4 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| MOMELOTINIB | 4 | BMPR1B, MARK2 |
| FEDRATINIB | 4 | BMPR1B, BRAF, MARK2, SRPK2 |
| RUXOLITINIB | 4 | BMPR1B, BRAF, MARK2 |
| BARICITINIB | 4 | MARK2 |
| TOFACITINIB | 4 | MARK2 |
| BRIGATINIB | 4 | MARK2 |
| NINTEDANIB | 4 | MARK2, SRPK2 |
| SUNITINIB | 4 | BMPR1B, CACNA1C, MARK2, SRPK2 |
| MIDOSTAURIN | 4 | MARK2, SRPK2 |
| GENTAMICIN SULFATE | 4 | RPL17, RPL23 |
| BEXAROTENE | 4 | RXRG |
| OXAPROZIN | 4 | RXRG, SHMT2 |
| TRETINOIN | 4 | RXRG |
| ALITRETINOIN | 4 | RXRG |
| AXITINIB | 4 | BMPR1B |
| VANDETANIB | 4 | BMPR1B |
| GILTERITINIB | 4 | BMPR1B |
| PAZOPANIB | 4 | BMPR1B, BRAF |
| DASATINIB | 4 | BMPR1B, BRAF, CACNA1C |
| QUIZARTINIB | 4 | BMPR1B |
| CRIZOTINIB | 4 | BMPR1B |
| BORTEZOMIB | 4 | SEM1 |
| CARFILZOMIB | 4 | SEM1 |
| DULOXETINE | 4 | CACNA1C, SHMT2 |
| PYRVINIUM | 4 | SHMT2 |
| FLUPIRTINE | 4 | SHMT2 |
| METHOTREXATE | 4 | SHMT2 |
| PRIMAQUINE | 4 | SHMT2 |
| VEMURAFENIB | 4 | BRAF |
| PONATINIB | 4 | BRAF |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 12.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| HDAC4 | 1,941 | Binding:1919, ADMET:13, Functional:6, Toxicity:3 |
| BRAF | 1,442 | Binding:1400, Functional:37, ADMET:5 |
| CACNA1C | 575 | Binding:319, Functional:211, Toxicity:26, ADMET:19 |
| MARK2 | 356 | Binding:355, Functional:1 |
| SMARCA2 | 311 | Binding:274, Functional:25, ADMET:12 |
| SRPK2 | 221 | Binding:221 |
| RXRG | 193 | Binding:169, Functional:24 |
| BMPR1B | 166 | Binding:164, ADMET:2 |
| UGT1A9 | 153 | ADMET:149, Binding:4 |
| ELOC | 97 | Binding:97 |
| RPL17 | 90 | Binding:90 |
| RPL23 | 90 | Binding:90 |
| SLC6A9 | 88 | Binding:83, Functional:5 |
| CACNA1I | 56 | Binding:44, Functional:9, ADMET:3 |
| DAGLA | 48 | Binding:48 |
| STIM1 | 35 | Binding:33, Functional:1, ADMET:1 |
| TCF4 | 31 | Binding:31 |
| SEM1 | 26 | Binding:26 |
| YWHAZ | 23 | Binding:23 |
| CACNB2 | 22 | Binding:20, ADMET:1, Toxicity:1 |
| UBE2D3 | 18 | Binding:18 |
| STIP1 | 13 | Binding:13 |
| KDM3B | 13 | Binding:13 |
| MAP1B | 10 | Binding:6, Functional:4 |
| SHMT2 | 6 | Binding:6 |
| ATXN7 | 5 | Binding:5 |
| TLL2 | 5 | Binding:5 |
| TNFRSF10A | 3 | Binding:3 |
| ST3GAL3 | 2 | Binding:2 |
| UPF1 | 1 | Binding:1 |
| TFEB | 1 | Binding:1 |
| VAV1 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| UPF1 | 3.6.4.13 | RNA helicase |
| CNNM4 | 7.2.2.14 | P-type Mg2+ transporter |
| BMPR1B | 2.7.10.2 | non-specific protein-tyrosine kinase |
| SHMT2 | 2.1.2.1 | glycine hydroxymethyltransferase |
| ST3GAL3 | 2.4.99.2, 2.4.99.6 | beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3-sialyltransferase, N-acetyllactosaminide alpha-2,3-sialyltransferase |
| BRAF | 2.7.10.2, 2.7.11.1 | non-specific protein-tyrosine kinase, non-specific serine/threonine protein kinase |
| TCF4 | 7.6.2.3 | ABC-type glutathione-S-conjugate transporter |
| DAGLA | 3.1.1.116 | sn-1-specific diacylglycerol lipase |
| UBE2D3 | 2.3.2.23, 2.3.2.24 | E2 ubiquitin-conjugating enzyme, (E3-independent) E2 ubiquitin-conjugating enzyme |
| UGT1A9 | 2.4.1.17 | glucuronosyltransferase |
| KDM3B | 1.14.11.65 | [histone H3]-dimethyl-L-lysine9 demethylase |
| HDAC4 | 3.5.1.98 | histone deacetylase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| MARK2 | 356 |
| RXRG | 193 |
| BMPR1B | 166 |
| BRAF | 1,442 |
| SMARCA2 | 311 |
| SRPK2 | 221 |
| UGT1A9 | 153 |
| CACNA1C | 575 |
| HDAC4 | 1,941 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 74; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| MOMELOTINIB | 4 | BMPR1B, MARK2 |
| FEDRATINIB | 4 | BMPR1B, BRAF, MARK2, SRPK2 |
| RUXOLITINIB | 4 | BMPR1B, BRAF, MARK2 |
| BARICITINIB | 4 | MARK2 |
| TOFACITINIB | 4 | MARK2 |
| BRIGATINIB | 4 | MARK2 |
| NINTEDANIB | 4 | MARK2, SRPK2 |
| SUNITINIB | 4 | BMPR1B, CACNA1C, MARK2, SRPK2 |
| MIDOSTAURIN | 4 | MARK2, SRPK2 |
| GENTAMICIN SULFATE | 4 | RPL17, RPL23 |
| BEXAROTENE | 4 | RXRG |
| OXAPROZIN | 4 | RXRG, SHMT2 |
| TRETINOIN | 4 | RXRG |
| ALITRETINOIN | 4 | RXRG |
| AXITINIB | 4 | BMPR1B |
| VANDETANIB | 4 | BMPR1B |
| GILTERITINIB | 4 | BMPR1B |
| PAZOPANIB | 4 | BMPR1B, BRAF |
| DASATINIB | 4 | BMPR1B, BRAF, CACNA1C |
| QUIZARTINIB | 4 | BMPR1B |
| CRIZOTINIB | 4 | BMPR1B |
| BORTEZOMIB | 4 | SEM1 |
| CARFILZOMIB | 4 | SEM1 |
| DULOXETINE | 4 | CACNA1C, SHMT2 |
| PYRVINIUM | 4 | SHMT2 |
| FLUPIRTINE | 4 | SHMT2 |
| METHOTREXATE | 4 | SHMT2 |
| PRIMAQUINE | 4 | SHMT2 |
| VEMURAFENIB | 4 | BRAF |
| PONATINIB | 4 | BRAF |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 17 | MARK2, RPL17, RPL23, RXRG, BMPR1B, SEM1, SHMT2, BRAF, SLC6A9, SRPK2 (+7 more) |
| B | Phased (≥1) drug, not yet approved | 2 | SMARCA2, TCF4 |
| C | Druggable family + PDB, no drug | 6 | UPF1, CNNM4, TNR, UBE2D3, KDM3B, CSMD1 |
| D | Druggable family + AlphaFold only, no drug | 8 | CSMD2, SEMA3A, ST3GAL3, TLL2, UNC5B, FOLH1B, OR14J1, IMMP2L |
| E | Difficult family or no structure, no drug | 41 | TCF20, MAP1B, RGS6, CNNM2, RTN1, ATXN7, SOX5, SP4, STIP1, SUPT3H (+31 more) |
Undrugged target profiles
55 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| YWHAZ | 23 | BRAF |
| TCF20 | 0 | — |
| CSMD2 | 0 | — |
| MAP1B | 10 | — |
| UPF1 | 1 | — |
| RGS6 | 0 | — |
| CNNM2 | 0 | — |
| RTN1 | 0 | — |
| CNNM4 | 0 | — |
| ATXN7 | 5 | — |
| SEMA3A | 0 | — |
| ST3GAL3 | 2 | — |
| SOX5 | 0 | — |
| SP4 | 0 | — |
| STIP1 | 13 | — |
| SUPT3H | 0 | — |
| TBR1 | 0 | — |
| ELOC | 97 | — |
| ELP4 | 0 | — |
| TFAP2B | 0 | — |
| TFEB | 1 | — |
| FERRY3 | 0 | — |
| TLL2 | 5 | — |
| TNFRSF10A | 3 | — |
| TNFRSF10D | 0 | — |
| TNR | 0 | — |
| UBE2D3 | 18 | — |
| UNC5B | 0 | — |
| VAV1 | 1 | — |
| MIR99AHG | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 1,257.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 615 |
| PHASE4 | 168 |
| PHASE3 | 152 |
| PHASE2 | 75 |
| PHASE1 | 38 |
| PHASE1/PHASE2 | 20 |
| PHASE2/PHASE3 | 16 |
| EARLY_PHASE1 | 16 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03420339 | PHASE4 | RECRUITING | Stimulant Effects on Disruptive Behavior |
| NCT03781752 | PHASE4 | RECRUITING | Carboxylesterase 1 Genetic Variation and Methylphenidate in ADHD |
| NCT03781765 | PHASE4 | RECRUITING | Stimulant vs. Non-stimulant Treatments and Reward Processing in Drug-naive Youth at SUD Risk |
| NCT04219280 | PHASE4 | RECRUITING | Evaluating Treatment of ADHD in Children with Down Syndrome |
| NCT04781140 | PHASE4 | RECRUITING | Evaluation of SPN-812 (Viloxazine Extended-release Capsule) in Preschool-age Children With ADHD |
| NCT05469386 | PHASE4 | ACTIVE_NOT_RECRUITING | Single and Combined Effects of Behavioral, Academic, and Medication Treatments for ADHD in the Classroom |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT06248229 | PHASE4 | RECRUITING | A Trial of Dyanavel XR in Treating Co-occurring Fatigue Symptoms in Adults With Attention Deficit Hyperactivity Disorder (ADHD). |
| NCT06577779 | PHASE4 | RECRUITING | An Open-Label Treatment With Randomization Observation, Investigator-Initiated Study, on the Duration and Efficacy of Jornay PM (Methylphenidate Hydrochloride Extended-Release Capsules) on Adult ADHD Symptoms and Executive Function and Emotional Regulation Throughout the Day Into Early Evening |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07044609 | PHASE4 | NOT_YET_RECRUITING | A Study to Assess the Effectiveness and Safety of Clonidine Extended-Release OnydaTM XR in Children With ADHD and ODD |
| NCT07121621 | PHASE4 | NOT_YET_RECRUITING | PHArmaCokinetics of methYLphenidate in Adult Patients With Attention-Deficit /Hyperactivity Disorder |
| NCT07169760 | PHASE4 | RECRUITING | R61/33 - VR Study Phase 4 |
| NCT00152750 | PHASE4 | UNKNOWN | Study of Clonidine on Sleep Architecture in Children With Tourette’s Syndrome (TS) and Comorbid ADHD |
| NCT00181571 | PHASE4 | COMPLETED | A Double-Blind Comparison of Concerta and Placebo in Adults With Attention Deficit Hyperactivity Disorder |
| NCT00181675 | PHASE4 | COMPLETED | A Double-Blind Comparison of Galantamine HBr and Placebo in Adults With Attention Deficit Hyperactivity Disorder |
| NCT00181714 | PHASE4 | COMPLETED | Prevention of Cigarette Smoking in Attention Deficit Hyperactivity Disorder (ADHD) Youth With Concerta |
| NCT00181948 | PHASE4 | COMPLETED | Strattera Treatment in Children With ADHD Who Have Poor Response to Stimulant Therapy |
| NCT00181987 | PHASE4 | COMPLETED | Concerta in the Treatment of ADHD in Youth and Adults With Bipolar Disorder |
| NCT00190736 | PHASE4 | COMPLETED | Efficacy and Safety of Once-Daily Atomoxetine Hydrochloride in Adults With ADHD Over an Extended Period of Time (6 Months) |
| NCT00190775 | PHASE4 | COMPLETED | A Randomized, Double-Blind Comparison of Placebo and Atomoxetine Hydrochloride Given Once a Day in Adults With Attention-Deficit/Hyperactivity Disorder (ADHD) |
| NCT00190879 | PHASE4 | COMPLETED | Placebo-Controlled Study of Atomoxetine Hydrochloride in the Treatment of Adults With ADHD and Comorbid Social Anxiety Disorder |
| NCT00190957 | PHASE4 | COMPLETED | Atomoxetine Treatment of Adults With ADHD and Comorbid Alcohol Abuse |
| NCT00191035 | PHASE4 | COMPLETED | Maintenance of Benefit With Atomoxetine Hydrochloride in Adolescents With ADHD |
| NCT00191048 | PHASE4 | COMPLETED | Treatment With Atomoxetine Hydrochloride in Children and Adolescents With ADHD |
| NCT00191633 | PHASE4 | COMPLETED | Study of Atomoxetine in Children With ADHD to Assess Symptomatic and Functional Outcomes |
| NCT00191906 | PHASE4 | COMPLETED | Comparison of Atomoxetine and Placebo in Children With Attention-Deficit/Hyperactivity Disorder (ADHD) and/or Reading Disorder (RD) |
| NCT00216918 | PHASE4 | COMPLETED | Neuropsychological Functioning in Children With Attention-Deficit/Hyperactivity Disorder. |
| NCT00221962 | PHASE4 | COMPLETED | Study of Aripiprazole (Abilify) in Children With ADHD (Attention Deficit Hyperactivity Disorder) |
| NCT00223561 | PHASE4 | COMPLETED | Methylphenidate and Driving Ability in Adult Patients With Attention-Deficit Hyperactivity Disorder |
| NCT00299234 | PHASE4 | TERMINATED | Atomoxetine for Children With Acquired Attentional Disorders Following Completion of Chemotherapy for ALL |
| NCT00302406 | PHASE4 | COMPLETED | Naturalistic Substitution of Concerta in Adult Subject With ADHD Receiving Immediate Release Methylphenidate |
| NCT00305370 | PHASE4 | COMPLETED | Aripiprazole Associated With Methylphenidate in Children and Adolescents With Bipolar Disorder and ADHD |
| NCT00381758 | PHASE4 | COMPLETED | The COMACS Study: A Comparison of Methylphenidates in an Analog Classroom Setting |
| NCT00406354 | PHASE4 | COMPLETED | Comparison of Atomoxetine Versus Placebo in Children and Adolescents With ADHD and Comorbid ODD in Germany |
| NCT00434213 | PHASE4 | COMPLETED | Characterization of Dermal Reactions in Pediatric Patients With ADHD Using DAYTRANA |
| NCT00468143 | PHASE4 | COMPLETED | A Within-Subject Cross-Over Comparison Between Immediate Release and Extended Release Adderall |
| NCT00471354 | PHASE4 | COMPLETED | A Study for Patients With Attention-Deficit/Hyperactivity Disorder Treated With Atomoxetine |
| NCT00483106 | PHASE4 | COMPLETED | Clinical and Pharmacogenetic Study of Attention Deficit With Hyperactivity Disorder (ADHD) |
| NCT00485849 | PHASE4 | COMPLETED | A Study of Atomoxetine for Attention Deficit and Hyperactive/Impulsive Behaviour Problems in Children With ASD |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| ATOMOXETINE | 4 | 155 |
| METHYLPHENIDATE | 4 | 134 |
| LISDEXAMFETAMINE | 4 | 44 |
| GUANFACINE | 4 | 15 |
| NALTREXONE | 4 | 12 |
| VILOXAZINE HYDROCHLORIDE | 4 | 9 |
| AMPHETAMINE | 4 | 6 |
| BUPROPION | 4 | 6 |
| DEXMETHYLPHENIDATE | 4 | 6 |
| SOLRIAMFETOL | 4 | 6 |
| MOLINDONE | 4 | 5 |
| DEXTROAMPHETAMINE | 4 | 4 |
| MELATONIN | 4 | 4 |
| MEMANTINE | 4 | 4 |
| MODAFINIL | 4 | 4 |
| CARIPRAZINE | 4 | 3 |
| ARIPIPRAZOLE | 4 | 2 |
| CALCITRIOL | 4 | 2 |
| CLONIDINE HYDROCHLORIDE | 4 | 2 |
| ESZOPICLONE | 4 | 2 |
| LEVAMFETAMINE | 4 | 2 |
| PYRIDOXINE | 4 | 2 |
| VARENICLINE | 4 | 2 |
| ZOPICLONE | 4 | 2 |
| AMANTADINE | 4 | 1 |
| AMILORIDE | 4 | 1 |
| BREXPIPRAZOLE | 4 | 1 |
| CARBIDOPA | 4 | 1 |
| CARBIDOPA ANHYDROUS | 4 | 1 |
| CLONIDINE | 4 | 1 |
Related Atlas pages
- Cohort genes: TCF20, CSMD2, MARK2, MAP1B, UPF1, RGS6, CNNM2, RPL17, RPL23, RTN1, RXRG, CNNM4, ATXN7, SEMA3A, BMPR1B, SEM1, SHMT2, ST3GAL3, BRAF, SLC6A9, SMARCA2, SOX5, SP4, SRPK2, STIM1, STIP1, SUPT3H, TBR1, ELOC, TCF4, DAGLA, ELP4, TFAP2B, TFEB, FERRY3, TLL2, TNFRSF10A, TNFRSF10D, TNR, UBE2D3, UNC5B, VAV1, MIR99AHG, YWHAZ, SCAPER, BCL11A, BCL11B, SLC30A9, FAM53C, KDM3B, PCLO, DLEU1, SLC4A10, ZKSCAN3, FOXP2, CACNA1C, CACNA1I, OR14J1, ANO3, CACNB2, CSMD1, HDAC4, ZSCAN31, PMEPA1, FBXL16, JPH2, NLGN1, IFT81, PARD3B, MRPL33, VPS45, IMMP2L
- Drugs: Atomoxetine, Methylphenidate, Lisdexamfetamine, Guanfacine, Naltrexone, Viloxazine, Amphetamine, Bupropion, Dexmethylphenidate, Solriamfetol, Molindone, Dextroamphetamine, Melatonin, Memantine, Modafinil, Cariprazine, Aripiprazole, Calcitriol, Clonidine, Eszopiclone, Levamfetamine, Pyridoxine, Varenicline, Zopiclone, Amantadine, Amiloride, Brexpiprazole, Carbidopa
- Associated genes: DRD5