Attention deficit-hyperactivity disorder

disease
On this page

Also known as ADHDattention deficit hyperactivity disorderattention deficit/hyperactivity disorder

Summary

Attention deficit-hyperactivity disorder (MONDO:0007743) is a disease with 74 cohort genes (2,387 GWAS associations across 172 studies) and 1,257 clinical trials. The dominant Reactome pathway is TP53 Regulates Transcription of Death Receptors and Ligands (4 cohort genes). Top therapeutic interventions include atomoxetine, methylphenidate, and lisdexamfetamine.

At a glance

  • Cohort genes: 74
  • GWAS associations: 2,387
  • ClinVar variants: 71
  • Clinical trials: 1,257

Clinical features

No curated clinical features (Orphanet) for this disease.

Identifiers

Disease identifiers

FieldValue
Canonical nameattention deficit-hyperactivity disorder
Mondo IDMONDO:0007743
EFOEFO:0003888
NCITC97160
UMLSC1263846
MedGen220387
Is cancer (heuristic)no

Also known as: ADHD · attention deficit hyperactivity disorder · attention deficit-hyperactivity disorder · attention deficit/hyperactivity disorder

Data availability: 71 ClinVar variants · 2,387 GWAS associations (172 studies) · 1 GenCC gene-disease record · 35 cell lines.

Disease family

An umbrella term covering 3 Mondo subtypes.

Classification path: disease › human disease › disease by developmental or physiological process › psychiatric disordermental disorderdevelopmental disorder of mental healthspecific developmental disorderattention deficit-hyperactivity disorder

Related subtypes (9): fetal alcohol spectrum disorder, oppositional defiant disorder, fetal nicotine spectrum disorder, communication disorder, stereotypic movement disorder, tic disorder, learning disability, developmental coordination disorder, conduct disorder

Subtypes (3): attention deficit hyperactivity disorder, inattentive type, hereditary attention deficit-hyperactivity disorder, attention deficit-hyperactivity disorder 8

Genetics & variants

GWAS landscape

2,387 GWAS associations across 172 studies. Top hits map to 38 distinct genes (as reported by GWAS).

Top associations by p-value

rsIDp-valueGeneRisk alleleOdds ratio
rs99195587e-59NCAM1T0.02
rs2660582e-38TMEM182 - CRLF3P1C0.02
rs286063701e-33BORCS7-ASMT - CNNM2C0.01
rs64527854e-32TMEM161B-DTC0.01
rs129075461e-31SEMA6DG0.02
rs13812878e-30LINC01550 - LINC02295C0.01
rs4588061e-29REV3L, MFSD4BC0.02
rs132176191e-27ZSCAN31?
rs23368952e-27TENM2G0.01
rs43498862e-26SDK1C0.01
rs14765353e-26FOXP2C0.01
rs104272553e-26RPL6P5 - METAP2P1C0.01
rs62652e-24BDNF-AS, BDNFC0.01
rs76759163e-24PCDH7C0.01
rs129708163e-24DCCG0.01
rs726788592e-23RNU6-289P - RPL36AP23C0.02
rs64609442e-23MAD1L1C0.01
rs42406715e-23XKR6G0.01
rs40744421e-22LINC01830G0.01
rs28653032e-22LSAMP - IGSF11G0.01
rs67112542e-22LINC01875 - TMEM18G0.01
rs727807413e-22NIHCOLE - RNU6-334PC0.01
rs115962146e-21SORCS3G0.01
rs22721683e-20ZKSCAN5G0.01
rs79424175e-20METTL15 - LINC02758C0.01
rs42989678e-20CACNA1C, CACNA1C-IT3?
rs100013653e-19TTC29G0.01
rs107877383e-19SHTN1C0.01
rs597241224e-19GULOPC0.01
rs18998964e-19RUNX1T1 - FLJ46284C0.01

Top studies (by case count)

StudyLead authorYearCasesControlsTitle
GCST008919Zhu Z201946,802381,675Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.
GCST007777Schork AJ201946,00819,526A genome-wide association study of shared risk across psychiatric disorders implicates gene regulation during fetal neurodevelopment.
GCST008417Demontis D201935,00616,366Genome-wide association study implicates CHRNA2 in cannabis use disorder.
GCST008416Demontis D201932,71616,269Genome-wide association study implicates CHRNA2 in cannabis use disorder.
GCST007582Klein M201919,09934,194Genetic Markers of ADHD-Related Variations in Intracranial Volume.
GCST007583Klein M201919,09934,194Genetic Markers of ADHD-Related Variations in Intracranial Volume.
GCST007584Klein M201919,09934,194Genetic Markers of ADHD-Related Variations in Intracranial Volume.
GCST007585Klein M201919,09934,194Genetic Markers of ADHD-Related Variations in Intracranial Volume.
GCST007586Klein M201919,09934,194Genetic Markers of ADHD-Related Variations in Intracranial Volume.
GCST007587Klein M201919,09934,194Genetic Markers of ADHD-Related Variations in Intracranial Volume.

Variant details and genetic-evidence tiers

Tier distribution (top 50 variants)

TierVariants
Tier 1: coding1
Tier 2: splice/UTR3
Tier 3: regulatory3
Tier 4: intronic/intergenic43

MAF distribution

BucketVariants
common (>=0.05)50
low_freq (0.01-0.05)0
rare (<0.01)0
unknown0

Functional consequences

ConsequenceCount
intron_variant37
intergenic_variant4
non_coding_transcript_exon_variant2
3_prime_UTR_variant2
regulatory_region_variant2
missense_variant1
5_prime_UTR_variant1
TF_binding_site_variant1

Top variants

rsIDChrPosAllelesMAFConsequenceGenep-valueTier
rs991955811113006687T>A,G0.387intron_variantNCAM17e-59Tier 4: intronic/intergenic
rs2660582103469970C>A,G,T0.472intron_variantTMEM182 - CRLF3P12e-38Tier 4: intronic/intergenic
rs2860637010102911075C>A0.338intron_variantBORCS7-ASMT - CNNM21e-33Tier 4: intronic/intergenic
rs6452785588389683C>G,T0.468intron_variantTMEM161B-DT4e-32Tier 4: intronic/intergenic
rs129075461547392083G>A0.204intron_variantSEMA6D1e-31Tier 4: intronic/intergenic
rs13812871498131215C>T0.457intron_variantLINC01550 - LINC022958e-30Tier 4: intronic/intergenic
rs4588066111354825C>G,T0.178intron_variantREV3L, MFSD4B1e-29Tier 4: intronic/intergenic
rs13217619628338894T>C0.05intron_variantZSCAN311e-27Tier 4: intronic/intergenic
rs23368955167563690G>A0.352intron_variantTENM22e-27Tier 4: intronic/intergenic
rs434988673330406C>A,T0.462intron_variantSDK12e-26Tier 4: intronic/intergenic
rs14765357114430980C>A,G,T0.451intron_variantFOXP23e-26Tier 4: intronic/intergenic
rs104272552145367955C>T0.473intergenic_variantRPL6P5 - METAP2P13e-26Tier 4: intronic/intergenic
rs62651127658369C>A,G,T0.186missense_variantBDNF-AS, BDNF2e-24Tier 1: coding
rs7675916431142196C>T0.287intron_variantPCDH73e-24Tier 4: intronic/intergenic
rs129708161852497489G>A0.402intron_variantDCC3e-24Tier 4: intronic/intergenic
rs726788594111485805C>T0.167intergenic_variantRNU6-289P - RPL36AP232e-23Tier 4: intronic/intergenic
rs646094471836563C>G,T0.408intron_variantMAD1L12e-23Tier 4: intronic/intergenic
rs4240671810910238G>A0.491intron_variantXKR65e-23Tier 4: intronic/intergenic
rs4074442222331242G>A,C0.397intron_variantLINC018301e-22Tier 4: intronic/intergenic
rs28653033118074139G>A,C,T0.15intron_variantLSAMP - IGSF112e-22Tier 4: intronic/intergenic
rs67112542624210G>A,T0.173non_coding_transcript_exon_variantLINC01875 - TMEM182e-22Tier 4: intronic/intergenic
rs727807415104592616C>A0.171intron_variantNIHCOLE - RNU6-334P3e-22Tier 4: intronic/intergenic
rs1159621410104694074G>A,C0.394intron_variantSORCS36e-21Tier 4: intronic/intergenic
rs2272168799505154G>A,C,T0.1575_prime_UTR_variantZKSCAN53e-20Tier 2: splice/UTR
rs79424171128634687C>A,G,T0.346intergenic_variantMETTL15 - LINC027585e-20Tier 4: intronic/intergenic
rs4298967122299028A>C,G,T0.05intron_variantCACNA1C, CACNA1C-IT38e-20Tier 4: intronic/intergenic
rs100013654146876062G>A,T0.386intron_variantTTC293e-19Tier 4: intronic/intergenic
rs1078773810117017860C>T0.262TF_binding_site_variantSHTN13e-19Tier 3: regulatory
rs59724122827567179C>T0.169intron_variantGULOP4e-19Tier 4: intronic/intergenic
rs1899896892188808C>T0.299intergenic_variantRUNX1T1 - FLJ462844e-19Tier 4: intronic/intergenic

ClinVar germline variants

71 retrieved; paginated sample, class counts are floors:

35 uncertain significance, 20 pathogenic, 11 likely pathogenic, 1 association, 1 benign/likely benign, 1 pathogenic/likely pathogenic, 1 conflicting classifications of pathogenicity, 1 association; risk factor

ClinVarVariant (HGVS)GeneClassificationReview
26785046;XY;t(8;10)(q13;p13)dnPathogeniccriteria provided, single submitter
26788246;XX;inv(7)(q11.23q36.3)dnPathogeniccriteria provided, single submitter
26790246;XY;t(3;5)(q24;p15.3)dnPathogeniccriteria provided, single submitter
26793746;XY;t(5;15)(q11.2;q24)Pathogeniccriteria provided, single submitter
26803946;XY;t(3;18)(q13.31;q22.1)dnPathogeniccriteria provided, single submitter
1330165GRCh37/hg19 3q23-25.32(chr3:142729607-157921084)x3AADACPathogeniccriteria provided, single submitter
1700599NM_014921.5(ADGRL1):c.2998T>C (p.Trp1000Arg)ADGRL1Pathogeniccriteria provided, single submitter
1700604NM_014921.5(ADGRL1):c.3476C>T (p.Ser1159Phe)ADGRL1Pathogeniccriteria provided, single submitter
1700605NM_014921.5(ADGRL1):c.2049dup (p.Glu684fs)ADGRL1Pathogeniccriteria provided, single submitter
1700602NM_014921.5(ADGRL1):c.819G>A (p.Trp273Ter)ADGRL1-AS1Pathogeniccriteria provided, single submitter
523274GRCh37/hg19 22q11.21(chr22:18894835-21505417)ARVCFPathogeniccriteria provided, single submitter
242885NM_138425.4(C12orf57):c.53-2A>GC12orf57Pathogeniccriteria provided, multiple submitters, no conflicts
183276NM_020374.4(FERRY3):c.639_640insACAA (p.Gln214fs)FERRY3Pathogenic/Likely pathogenicno assertion criteria provided
254029NM_016194.4(GNB5):c.368C>T (p.Ser123Leu)GNB5Pathogeniccriteria provided, multiple submitters, no conflicts
3238952GRCh38/hg38 3q27.1-27.2(chr3:183020090-185760128)x1LOC129938037Pathogeniccriteria provided, single submitter
638688NM_005909.5(MAP1B):c.5368C>T (p.Arg1790Ter)MAP1BPathogeniccriteria provided, single submitter
189665NM_001110792.2(MECP2):c.1200_1220delinsCTGAGCCCCAGGACTTGAGCA (p.Pro401_Ser407delinsTer)MECP2Pathogeniccriteria provided, single submitter
417685NM_020843.3(SCAPER):c.2973_2976del (p.Ile991Metfs)SCAPERPathogeniccriteria provided, single submitter
590780NM_001378418.1(TCF20):c.5725C>T (p.His1909Tyr)TCF20Pathogeniccriteria provided, single submitter
523259GRCh37/hg19 17p12(chr17:14215739-15422582)TVP23CPathogeniccriteria provided, single submitter
56645NM_152564.5(VPS13B):c.1219C>T (p.Gln407Ter)VPS13BPathogeniccriteria provided, multiple submitters, no conflicts
26783446;X;t(Y;16)(q11.23;p11.2);t(6;21)(p21.3;p13)dnLikely pathogeniccriteria provided, single submitter
26787546;XX;t(10;14)(p13;q21)dnLikely pathogeniccriteria provided, single submitter
1700603NM_014921.5(ADGRL1):c.26G>A (p.Trp9Ter)ADGRL1Likely pathogeniccriteria provided, single submitter
183350NM_005441.3(CHAF1B):c.496A>G (p.Ile166Val)CHAF1BLikely pathogenicno assertion criteria provided
242891NM_004521.3(KIF5B):c.2252A>G (p.His751Arg)KIF5BLikely pathogenicno assertion criteria provided
242888NM_177433.3(MAGED2):c.1003del (p.Gln335fs)MAGED2Likely pathogenicno assertion criteria provided
9733NC_012920.1(MT-ND1):m.3697G>AMT-ND1Likely pathogenicreviewed by expert panel
3233357NM_001035006.5(RPL17):c.452del (p.Thr151fs)RPL17Likely pathogeniccriteria provided, single submitter
932939NM_006593.4(TBR1):c.553C>T (p.Gln185Ter)TBR1Likely pathogeniccriteria provided, single submitter

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 0 · Orphanet: 71 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 5

Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)

GeneHGNCEvidence routes
TCF20TCF20GWAS, Orphanet
CSMD2CSMD2GWAS
MARK2MARK2GWAS
MAP1BMAP1BGWAS, Orphanet
UPF1UPF1GWAS, Orphanet

Orphanet rare-disease linkage (cohort genes)

GeneOrphanet IDRare disease
TCF20Orphanet:528084Non-specific syndromic intellectual disability
MAP1BOrphanet:90635Rare autosomal dominant non-syndromic sensorineural deafness type DFNA
MAP1BOrphanet:98892Periventricular nodular heterotopia
UPF1Orphanet:528084Non-specific syndromic intellectual disability
CNNM2Orphanet:620363Primary hypomagnesemia-generalized seizures-intellectual disability-obesity syndrome
CNNM4Orphanet:1873Jalili syndrome
ATXN7Orphanet:94147Spinocerebellar ataxia type 7
SEMA3AOrphanet:130Brugada syndrome
SEMA3AOrphanet:478Kallmann syndrome
BMPR1BOrphanet:2098Acromesomelic dysplasia, Grebe type
BMPR1BOrphanet:2639Fibular aplasia-complex brachydactyly syndrome
BMPR1BOrphanet:93384Brachydactyly type C
BMPR1BOrphanet:93388Brachydactyly type A1
BMPR1BOrphanet:93396Brachydactyly type A2
SEM1Orphanet:2440Isolated split hand-split foot malformation
ST3GAL3Orphanet:697734ST3GAL3-CDG
BRAFOrphanet:1340Cardiofaciocutaneous syndrome
BRAFOrphanet:146Differentiated thyroid carcinoma
BRAFOrphanet:251615Pilomyxoid astrocytoma
BRAFOrphanet:389Langerhans cell histiocytosis
BRAFOrphanet:500Noonan syndrome with multiple lentigines
BRAFOrphanet:54595Craniopharyngioma
BRAFOrphanet:58017Classic hairy cell leukemia
BRAFOrphanet:626Large/giant congenital melanocytic nevus
BRAFOrphanet:648Noonan syndrome
BRAFOrphanet:840Syringocystadenoma papilliferum
BRAFOrphanet:96253Cushing disease
SLC6A9Orphanet:289860Infantile glycine encephalopathy
SLC6A9Orphanet:289863Atypical glycine encephalopathy
SMARCA2Orphanet:3051Nicolaides-Baraitser syndrome
SMARCA2Orphanet:637013SMARCA2-related blepharophimosis-intellectual disability syndrome
SOX5Orphanet:31388412p12.1 microdeletion syndrome
SOX5Orphanet:313892Developmental and speech delay due to SOX5 deficiency
SOX5Orphanet:626Large/giant congenital melanocytic nevus
STIM1Orphanet:2593Tubular aggregate myopathy
STIM1Orphanet:317430Combined immunodeficiency due to STIM1 deficiency
STIM1Orphanet:3204Stormorken-Sjaastad-Langslet syndrome
TBR1Orphanet:1617Developmental delay-language impairment-dopa responsive dystonia-parkinsonism syndrome due to 2q24 microdeletion
TBR1Orphanet:528084Non-specific syndromic intellectual disability
TCF4Orphanet:171Primary sclerosing cholangitis
TCF4Orphanet:178469Autosomal dominant non-syndromic intellectual disability
TCF4Orphanet:2896Pitt-Hopkins syndrome
TCF4Orphanet:98974Fuchs endothelial corneal dystrophy
TFAP2BOrphanet:46627Char syndrome
TFAP2BOrphanet:466729Familial patent arterial duct
TFEBOrphanet:319308MiT family translocation renal cell carcinoma
FERRY3Orphanet:88616Autosomal recessive non-syndromic intellectual disability
YWHAZOrphanet:178469Autosomal dominant non-syndromic intellectual disability
SCAPEROrphanet:110Bardet-Biedl syndrome
SCAPEROrphanet:791Retinitis pigmentosa

Cohort genes → proteins

74 cohort genes, 73 distinct canonical proteins.

Evidence partition

SubsetGenes
gwas_only61
gwas_and_clinvar5
multi_evidence8

Cohort genes (full)

SymbolHGNCEnsemblUniProtNameEvidence
TCF20HGNC:11631ENSG00000100207Q9UGU0Transcription factor 20gwas,clinvar
CSMD2HGNC:19290ENSG00000121904Q7Z408CUB and sushi domain-containing protein 2gwas,clinvar
MARK2HGNC:3332ENSG00000072518Q7KZI7Serine/threonine-protein kinase MARK2gwas,clinvar
MAP1BHGNC:6836ENSG00000131711P46821Microtubule-associated protein 1Bgwas,clinvar
UPF1HGNC:9962ENSG00000005007Q92900Regulator of nonsense transcripts 1gwas,clinvar
RGS6HGNC:10002ENSG00000182732P49758Regulator of G-protein signaling 6gwas
CNNM2HGNC:103ENSG00000148842Q9H8M5Metal transporter CNNM2gwas
RPL17HGNC:10307ENSG00000265681P18621Large ribosomal subunit protein uL22clinvar
RPL23HGNC:10316ENSG00000125691P62829Large ribosomal subunit protein uL14clinvar
RTN1HGNC:10467ENSG00000139970Q16799Reticulon-1gwas
RXRGHGNC:10479ENSG00000143171P48443Retinoic acid receptor RXR-gammagwas
CNNM4HGNC:105ENSG00000158158Q6P4Q7Metal transporter CNNM4gwas
ATXN7HGNC:10560ENSG00000163635O15265Ataxin-7gwas
SEMA3AHGNC:10723ENSG00000075213Q14563Semaphorin-3Agwas
BMPR1BHGNC:1077ENSG00000138696O00238Bone morphogenetic protein receptor type-1Bgwas
SEM1HGNC:10845ENSG00000127922P6089626S proteasome complex subunit SEM1gwas
SHMT2HGNC:10852ENSG00000182199P34897Serine hydroxymethyltransferase, mitochondrialgwas
ST3GAL3HGNC:10866ENSG00000126091Q11203CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferasegwas
BRAFHGNC:1097ENSG00000157764P15056Serine/threonine-protein kinase B-rafgwas
SLC6A9HGNC:11056ENSG00000196517P48067Sodium- and chloride-dependent glycine transporter 1gwas
SMARCA2HGNC:11098ENSG00000080503P51531SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2gwas
SOX5HGNC:11201ENSG00000134532P35711Transcription factor SOX-5gwas
SP4HGNC:11209ENSG00000105866Q02446Transcription factor Sp4clinvar
SRPK2HGNC:11306ENSG00000135250P78362SRSF protein kinase 2gwas
STIM1HGNC:11386ENSG00000167323Q13586Stromal interaction molecule 1gwas
STIP1HGNC:11387ENSG00000168439P31948Stress-induced-phosphoprotein 1gwas
SUPT3HHGNC:11466ENSG00000196284O75486Transcription initiation protein SPT3 homologgwas
TBR1HGNC:11590ENSG00000136535Q16650T-box brain protein 1clinvar
ELOCHGNC:11617ENSG00000154582Q15369Elongin-Cgwas
TCF4HGNC:11634ENSG00000196628P15884Transcription factor 4gwas
DAGLAHGNC:1165ENSG00000134780Q9Y4D2Diacylglycerol lipase-alphaclinvar
ELP4HGNC:1171ENSG00000109911Q96EB1Elongator complex protein 4gwas
TFAP2BHGNC:11743ENSG00000008196Q92481Transcription factor AP-2-betagwas
TFEBHGNC:11753ENSG00000112561P19484Transcription factor EBgwas
FERRY3HGNC:1184ENSG00000047621Q9NQ89Ferry endosomal RAB5 effector complex subunit 3clinvar
TLL2HGNC:11844ENSG00000095587Q9Y6L7Tolloid-like protein 2gwas
TNFRSF10AHGNC:11904ENSG00000104689O00220Tumor necrosis factor receptor superfamily member 10Agwas
TNFRSF10DHGNC:11907ENSG00000173530Q9UBN6Tumor necrosis factor receptor superfamily member 10Dgwas
TNRHGNC:11953ENSG00000116147Q92752Tenascin-Rgwas
UBE2D3HGNC:12476ENSG00000109332P61077Ubiquitin-conjugating enzyme E2 D3gwas
UGT1A9HGNC:12541ENSG00000241119O60656UDP-glucuronosyltransferase 1A9gwas
UNC5BHGNC:12568ENSG00000107731Q8IZJ1Netrin receptor UNC5Bgwas
VAV1HGNC:12657ENSG00000141968P15498Proto-oncogene vavclinvar
MIR99AHGHGNC:1274ENSG00000215386mir-99a-let-7c cluster host genegwas
YWHAZHGNC:12855ENSG00000164924P6310414-3-3 protein zeta/deltagwas
SCAPERHGNC:13081ENSG00000140386Q9BY12S phase cyclin A-associated protein in the endoplasmic reticulumclinvar
BCL11AHGNC:13221ENSG00000119866Q9H165BCL11 transcription factor Agwas
BCL11BHGNC:13222ENSG00000127152Q9C0K0B-cell lymphoma/leukemia 11Bgwas
SLC30A9HGNC:1329ENSG00000014824Q6PML9Proton-coupled zinc antiporter SLC30A9, mitochondrialgwas
FAM53CHGNC:1336ENSG00000120709Q9NYF3Protein FAM53Cgwas

Cohort function summary

Lead sentence per gene, UniProt-curated.

SymbolProtein nameFunction (lead sentence)
TCF20Transcription factor 20Transcriptional activator that binds to the regulatory region of MMP3 and thereby controls stromelysin expression.
MARK2Serine/threonine-protein kinase MARK2Serine/threonine-protein kinase.
MAP1BMicrotubule-associated protein 1BFacilitates tyrosination of alpha-tubulin in neuronal microtubules.
UPF1Regulator of nonsense transcripts 1RNA-dependent helicase required for nonsense-mediated decay (NMD) of aberrant mRNAs containing premature stop codons and modulates the expression level of normal mRNAs.
RGS6Regulator of G-protein signaling 6Regulates G protein-coupled receptor signaling cascades.
CNNM2Metal transporter CNNM2Divalent metal cation transporter.
RPL17Large ribosomal subunit protein uL22Component of the large ribosomal subunit.
RPL23Large ribosomal subunit protein uL14Component of the large ribosomal subunit.
RTN1Reticulon-1Inhibits amyloid precursor protein processing, probably by blocking BACE1 activity.
RXRGRetinoic acid receptor RXR-gammaReceptor for retinoic acid.
CNNM4Metal transporter CNNM4Probable metal transporter.
ATXN7Ataxin-7Acts as a component of the SAGA (aka STAGA) transcription coactivator-HAT complex.
SEMA3ASemaphorin-3AInvolved in the development of the olfactory system and in neuronal control of puberty.
BMPR1BBone morphogenetic protein receptor type-1BOn ligand binding, forms a receptor complex consisting of two type II and two type I transmembrane serine/threonine kinases.
SEM126S proteasome complex subunit SEM1Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins.
SHMT2Serine hydroxymethyltransferase, mitochondrialCatalyzes the cleavage of serine to glycine accompanied with the production of 5,10-methylenetetrahydrofolate, an essential intermediate for purine biosynthesis.
ST3GAL3CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferaseCatalyzes the formation of the NeuAc-alpha-2,3-Gal-beta-1,4-GlcNAc-, NeuAc-alpha-2,3-Gal-beta-1,3-GlcNAc- and NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc- sequences found in terminal carbohydrate groups of glycoproteins and glycolipids.
BRAFSerine/threonine-protein kinase B-rafProtein kinase involved in the transduction of mitogenic signals from the cell membrane to the nucleus.
SLC6A9Sodium- and chloride-dependent glycine transporter 1Sodium- and chloride-dependent glycine transporter.
SMARCA2SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2ATPase involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).
SOX5Transcription factor SOX-5Transcription factor involved in chondrocytes differentiation and cartilage formation.
SP4Transcription factor Sp4Binds to GT and GC boxes promoters elements.
SRPK2SRSF protein kinase 2Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splici…
STIM1Stromal interaction molecule 1Acts as a Ca(2+) sensor that gates two major inward rectifying Ca(2+) channels at the plasma membrane: Ca(2+) release-activated Ca(2+) (CRAC) channels and arachidonate-regulated Ca(2+)-selective (ARC) channels.
STIP1Stress-induced-phosphoprotein 1Acts as a co-chaperone for HSP90AA1.
SUPT3HTranscription initiation protein SPT3 homologProbable transcriptional activator.
TBR1T-box brain protein 1Transcriptional repressor involved in multiple aspects of cortical development, including neuronal migration, laminar and areal identity, and axonal projection.
ELOCElongin-CSIII, also known as elongin, is a general transcription elongation factor that increases the RNA polymerase II transcription elongation past template-encoded arresting sites.
TCF4Transcription factor 4Transcription factor that binds to the immunoglobulin enhancer Mu-E5/KE5-motif.
DAGLADiacylglycerol lipase-alphaSerine hydrolase that hydrolyzes arachidonic acid-esterified diacylglycerols (DAGs) to produce the principal endocannabinoid, 2-arachidonoylglycerol (2-AG).
ELP4Elongator complex protein 4Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine).
TFAP2BTranscription factor AP-2-betaSequence-specific DNA-binding protein that interacts with inducible viral and cellular enhancer elements to regulate transcription of selected genes.
TFEBTranscription factor EBTranscription factor that acts as a master regulator of lysosomal biogenesis, autophagy, lysosomal exocytosis, lipid catabolism, energy metabolism and immune response.
FERRY3Ferry endosomal RAB5 effector complex subunit 3Component of the FERRY complex (Five-subunit Endosomal Rab5 and RNA/ribosome intermediary).
TLL2Tolloid-like protein 2Protease which specifically processes pro-lysyl oxidase.
TNFRSF10ATumor necrosis factor receptor superfamily member 10AReceptor for the cytotoxic ligand TNFSF10/TRAIL.
TNFRSF10DTumor necrosis factor receptor superfamily member 10DReceptor for the cytotoxic ligand TRAIL.
TNRTenascin-RNeural extracellular matrix (ECM) protein involved in interactions with different cells and matrix components.
UBE2D3Ubiquitin-conjugating enzyme E2 D3Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.
UGT1A9UDP-glucuronosyltransferase 1A9UDP-glucuronosyltransferase (UGT) that catalyzes phase II biotransformation reactions in which lipophilic substrates are conjugated with glucuronic acid to increase the metabolite’s water solubility, thereby facilitating excretion into eit…
UNC5BNetrin receptor UNC5BReceptor for netrin required for axon guidance.
VAV1Proto-oncogene vavCouples tyrosine kinase signals with the activation of the Rho/Rac GTPases, thus leading to cell differentiation and/or proliferation.
YWHAZ14-3-3 protein zeta/deltaAdapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways.
SCAPERS phase cyclin A-associated protein in the endoplasmic reticulumCCNA2/CDK2 regulatory protein that transiently maintains CCNA2 in the cytoplasm.
BCL11ABCL11 transcription factor ATranscription factor.
BCL11BB-cell lymphoma/leukemia 11BKey regulator of both differentiation and survival of T-lymphocytes during thymocyte development in mammals.
SLC30A9Proton-coupled zinc antiporter SLC30A9, mitochondrialMitochondrial proton-coupled zinc ion antiporter mediating the export of zinc from the mitochondria and involved in zinc homeostasis, zinc mobilization as well as mitochondrial morphology and health.
KDM3BLysine-specific demethylase 3BHistone demethylase that specifically demethylates ‘Lys-9’ of histone H3, thereby playing a central role in histone code.
PCLOProtein piccoloScaffold protein of the presynaptic cytomatrix at the active zone (CAZ) which is the place in the synapse where neurotransmitter is released.
FOLH1BPutative N-acetylated-alpha-linked acidic dipeptidaseHas both folate hydrolase and N-acetylated-alpha-linked-acidic dipeptidase (NAALADase) activity.

Protein-family classification

Druggable: 25 · Difficult: 17 · Unknown: 32 · Druggable fraction: 0.34

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

FamilyGenesFoldFDR
Complement27.2×0.324
Transcription factor141.6×0.324
Nuclear receptor15.2×0.385
Ion channel23.0×0.385
Enzyme (other)91.5×0.385
Kinase41.5×0.509
Protease31.5×0.517
Antibody/Immunoglobulin31.2×0.643
Other/Unknown320.8×0.989
Scaffold/PPI30.7×0.989
GPCR10.3×0.989

Per-gene assignment

SymbolFamilyDruggable?ECInterPro (top 3)
TCF20Transcription factornoZnf_PHD, Znf_RING/FYVE/PHD, EPHD
CSMD2ComplementyesSushi_SCR_CCP_dom, CUB_dom, Sperma_CUB_dom_sf
MARK2KinaseyesProt_kinase_dom, KA1_dom, Ser/Thr_kinase_AS
MAP1BOther/UnknownnoMAP1B_neuraxin, MAP1, MAP1B/S_N
UPF1Enzyme (other)yes3.6.4.13Helicase/UvrB_N, UPF1_CH/ZBD, P-loop_NTPase
RGS6Other/UnknownnoDEP_dom, G-protein_gamma-like_dom, RGS
CNNM2Other/UnknownnoCBS_dom, CNNM, RmlC-like_jellyroll
RPL17Other/UnknownnoRibosomal_uL22, Ribosomal_uL22_euk_arc, Ribosomal_uL22_CS
RPL23Other/UnknownnoRibosomal_uL14, Ribosomal_uL14_CS, Ribosomal_uL14_sf
RTN1Other/UnknownnoReticulon, RTN1-4
RXRGNuclear receptoryesRetinoid-X_rcpt/HNF4, Nucl_hrmn_rcpt_lig-bd, Znf_hrmn_rcpt
CNNM4Enzyme (other)yes7.2.2.14cNMP-bd_dom, CBS_dom, CNNM
ATXN7Other/UnknownnoSCA7_dom, Ataxin-7-like_regulator
SEMA3AAntibody/ImmunoglobulinyesSemap_dom, Ig_sub, Ig-like_dom
BMPR1BKinaseyes2.7.10.2TGFB_receptor, Activin_recp, Prot_kinase_dom
SEM1Other/UnknownnoDSS1_SEM1, DUF5543
SHMT2Enzyme (other)yes2.1.2.1Ser_HO-MeTrfase, PyrdxlP-dep_Trfase_major, PyrdxlP-dep_Trfase_small
ST3GAL3Enzyme (other)yes2.4.99.2Glyco_trans_29, Sialyl_trans, GT29-like_sf
BRAFKinaseyes2.7.10.2Prot_kinase_dom, Ser-Thr/Tyr_kinase_cat_dom, PKC_DAG/PE
SLC6A9Other/UnknownnoNa/ntran_symport, Na/ntran_symport_glycine_GLY1, SNS_sf
SMARCA2Other/UnknownnoSNF2_N, Bromodomain, Helicase_C-like
SOX5Transcription factornoHMG_box_dom, HMG_box_dom_sf, SOX/SOX-like_TF
SP4Transcription factornoZnf_C2H2_type, Znf_C2H2_sf, Sp4-like
SRPK2KinaseyesProt_kinase_dom, Ser/Thr_kinase_AS, Kinase-like_dom_sf
STIM1Other/UnknownnoSAM, SAM/pointed_sf, SOAR_STIM1/2
STIP1Other/UnknownnoSTI1_HS-bd, TPR-like_helical_dom_sf, TPR_2
SUPT3HOther/UnknownnoTFIID_TAF13, Histone-fold
TBR1Transcription factornoTF_T-box, p53-like_TF_DNA-bd_sf, TF_T-box_CS
ELOCOther/UnknownnoSKP1-like, SKP1/BTB/POZ_sf, Skp1_comp_POZ
TCF4Transcription factorno7.6.2.3bHLH_dom, HLH_DNA-bd_sf, NeuroDiff_E-box_TFs
DAGLAEnzyme (other)yes3.1.1.116Fungal_lipase-type, AB_hydrolase_fold, DAG_Lipase-Related
ELP4Other/UnknownnoElongator_complex_protein_4, P-loop_NTPase
TFAP2BTranscription factornoTF_AP2, TF_AP2_beta, TF_AP2_C
TFEBTranscription factornobHLH_dom, MiT/TFE_C, bHLHzip_TFEB
FERRY3Other/UnknownnoFy-3
TLL2ProteaseyesEGF-type_Asp/Asn_hydroxyl_site, EGF, CUB_dom
TNFRSF10AOther/UnknownnoDeath_dom, TNFR/NGFR_Cys_rich_reg, DEATH-like_dom_sf
TNFRSF10DOther/UnknownnoTNFR/NGFR_Cys_rich_reg, TNFR_10, TNFRSF10_N
TNRAntibody/ImmunoglobulinyesEGF, Fibrinogen_a/b/g_C_dom, FN3_dom
UBE2D3Enzyme (other)yes2.3.2.23UBC, UBQ-conjugating_enzyme/RWD, UBQ-conjugating_AS
UGT1A9Enzyme (other)yes2.4.1.17UDP_glucos_trans, UDP_glycos_trans_CS, UDP-glycosyltransferase
UNC5BAntibody/ImmunoglobulinyesDeath_dom, TSP1_rpt, ZU5_dom
VAV1Scaffold/PPInoDH_dom, SH2, GDS_CDC24_CS
MIR99AHGOther/Unknownno
YWHAZOther/Unknownno14-3-3, 14-3-3_CS, 14-3-3_domain
SCAPERTranscription factornoMatrin/U1-like-C_Znf_C2H2, Znf_C2H2_type, SCAPER_N
BCL11ATranscription factornoZnf_C2H2_type, Znf_C2H2_sf, Dev/Hematopoietic_TF
BCL11BTranscription factornoZnf_C2H2_type, Znf_C2H2_sf, Dev/Hematopoietic_TF
SLC30A9Other/UnknownnoCation_efflux, DNA-bd_dom_put_sf, Cation_efflux_TMD_sf
FAM53COther/UnknownnoFAM53

Expression context

Cohort genes with no expression data: 0.

67 cohort genes are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

BucketGenes
narrow (1-5 tissues)1
moderate (6-20)0
broad (>20)73
unknown0

Top tissues across cohort

TissueCohort genes
cortical plate12
calcaneal tendon9
buccal mucosa cell7
ganglionic eminence6
ventricular zone6
primordial germ cell in gonad6
Brodmann (1909) area 235
hindlimb stylopod muscle5
sperm5
middle temporal gyrus4
sural nerve4
oocyte4
colonic epithelium4
tendon of biceps brachii4
gastrocnemius4
primary visual cortex4
endothelial cell3
muscle of leg3
mucosa of paranasal sinus3
right lobe of liver3

Per-gene tissue summary (top 30)

SymbolBgee breadthFANTOM5 breadthSCXATop tissues
TCF20134ubiquitousyescortical plate, ganglionic eminence, tonsil
CSMD2166broadmarkerbuccal mucosa cell, ventricular zone, kidney epithelium
MARK2188ubiquitousmarkerlower esophagus mucosa, granulocyte, esophagus mucosa
MAP1B299ubiquitousmarkerlateral nuclear group of thalamus, substantia nigra pars compacta, substantia nigra pars reticulata
UPF1262ubiquitousmarkerright hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex
RGS6185broadmarkercortical plate, sural nerve, middle temporal gyrus
CNNM2234ubiquitousmarkersecondary oocyte, oocyte, right adrenal gland
RPL17134ubiquitousmarkerleft ovary, ovary, right ovary
RPL23210ubiquitousmarkerganglionic eminence, left ovary, right ovary
RTN1270broadmarkerBrodmann (1909) area 23, endothelial cell, pons
RXRG170broadmarkerhindlimb stylopod muscle, adenohypophysis, muscle of leg
CNNM4189ubiquitousmarkermucosa of transverse colon, rectum, ileal mucosa
ATXN7290ubiquitousmarkermucosa of paranasal sinus, jejunal mucosa, superficial temporal artery
SEMA3A194ubiquitousmarkerstromal cell of endometrium, cortical plate, colonic epithelium
BMPR1B239broadmarkercalcaneal tendon, bronchial epithelial cell, cauda epididymis
SEM1285ubiquitousmarkercalcaneal tendon, tendon, tendon of biceps brachii
SHMT2288ubiquitousmarkertendon of biceps brachii, cartilage tissue, right lobe of liver
ST3GAL3178ubiquitousmarkerhindlimb stylopod muscle, gastrocnemius, muscle of leg
BRAF265ubiquitousmarkerbuccal mucosa cell, colonic epithelium, calcaneal tendon
SLC6A9180ubiquitousmarkerC1 segment of cervical spinal cord, spinal cord, skin of leg
SMARCA2301ubiquitousmarkercalcaneal tendon, colonic epithelium, cortical plate
SOX5221ubiquitousmarkercortical plate, calcaneal tendon, synovial joint
SP4265ubiquitousmarkercerebellar vermis, germinal epithelium of ovary, superficial temporal artery
SRPK2293ubiquitousmarkersperm, male germ cell, pons
STIM1237ubiquitousmarkergastrocnemius, muscle of leg, hindlimb stylopod muscle
STIP1294ubiquitousmarkeradrenal tissue, left testis, ganglionic eminence
SUPT3H206ubiquitousyesprimordial germ cell in gonad, sperm, male germ line stem cell (sensu Vertebrata) in testis
TBR158tissue_specificmarkercortical plate, ganglionic eminence, Brodmann (1909) area 10
ELOC293ubiquitousmarkeroocyte, sperm, heart right ventricle
TCF4292ubiquitousmarkerendothelial cell, skin of hip, pericardium

Protein interactions among cohort

Intra-cohort edges: 24.

Hub genes (top 10 by interactor count)

SymbolInteractor count
BRAF7,394
RPL175,372
SHMT25,293
STIP15,243
UPF14,936
HDAC44,771
SMARCA24,237
ELOC4,044
SRPK23,839
MAP1B3,724

Intra-cohort edges

ABSources
ATXN7SUPT3Hintact
BCL11ABCL11Bbiogrid_interaction
BCL11BFOXP2string_interaction
BCL11BTBR1string_interaction
BRAFYWHAZbiogrid_interaction, intact
CACNA1CCACNA1Istring_interaction
CACNA1CCACNB2intact, string_interaction
CACNA1CCSMD1string_interaction
CACNA1CJPH2string_interaction
CACNA1CSTIM1string_interaction
CACNA1ICACNB2string_interaction
CSMD1PCLOstring_interaction
FAM53CKDM3Bstring_interaction
FAM53CYWHAZbiogrid_interaction, intact
FBXL16MARK2intact
FOXP2SP4biogrid_interaction, intact
FOXP2TBR1string_interaction
HDAC4YWHAZintact
IMMP2LSHMT2biogrid_interaction
MARK2PARD3Bbiogrid_interaction
MARK2YWHAZintact
SOX5TBR1string_interaction
TFEBYWHAZbiogrid_interaction, intact
TFEBZKSCAN3string_interaction

Structural data

PDB: 42 · AlphaFold-only: 31 · No structure: 1

Cohort genes with PDB structures (top 30)

SymbolUniProtPDB entries
ELOCQ15369225
RPL17P18621195
RPL23P62829190
BRAFP15056131
SEM1P60896129
MRPL33O7539486
YWHAZP6310477
UBE2D3P6107745
KDM3BQ7LBC636
CACNA1CQ1393633
SMARCA2P5153132
SHMT2P3489727
HDAC4P5652419
BCL11AQ9H16517
UPF1Q9290012
VAV1P1549810
SLC6A9P480679
STIP1P319488
CNNM2Q9H8M57
STIM1Q135866
MARK2Q7KZI75
ATXN7O152655
TCF4P158845
SUPT3HO754864
TFEBP194844
CACNA1IQ9P0X44
SRPK2P783623
CACNB2Q082893
RXRGP484432
CNNM4Q6P4Q72

AlphaFold-only cohort genes (top 30 by pLDDT)

SymbolUniProtpLDDT
FOLH1BQ9HBA996.69
UGT1A9O6065692.26
ST3GAL3Q1120390.87
VPS45Q9NRW790.65
IMMP2LQ96T5287.66
OR14J1Q9UGF587.60
FBXL16Q8N46184.53
SEMA3AQ1456384.50
FERRY3Q9NQ8984.04
IFT81Q8WYA083.45
TLL2Q9Y6L781.98
UNC5BQ8IZJ177.60
ANO3Q9BYT976.30
ELP4Q96EB174.49
SLC4A10Q6U84171.37
ZSCAN31Q96LW967.96
DAGLAQ9Y4D263.87
TNFRSF10DQ9UBN660.71
ZKSCAN3Q9BRR060.16
SOX5P3571158.95
PMEPA1Q969W957.03
TBR1Q1665056.17
PARD3BQ8TEW855.56
DLEU1O4326155.08
FAM53CQ9NYF352.63
BCL11BQ9C0K051.76
RTN1Q1679948.88
MAP1BP4682146.18
SP4Q0244639.58
TCF20Q9UGU039.03

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 665. Enrichment computed across 250 evidence-associated genes (139 with Reactome annotation).

Pathways by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 139 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

PathwayCohort genesFoldFDRSample cohort genes
TP53 Regulates Transcription of Death Receptors and Ligands427.4×0.006TNFRSF10A, TNFRSF10D, PPP1R13B, TMEM219
Late SARS-CoV-2 Infection Events510.5×0.034ST3GAL3, SRPK2, ANO3, ANO4, ANO5
Induction of Cell-Cell Fusion319.0×0.102ANO3, ANO4, ANO5
Highly sodium permeable postsynaptic acetylcholine nicotinic receptors223.5×0.389CHRNA3, CHRNB4
TRAIL signaling220.5×0.389TNFRSF10A, TNFRSF10D
Netrin mediated repulsion signals218.3×0.389UNC5B, DCC
Highly calcium permeable nicotinic acetylcholine receptors218.3×0.389CHRNA3, CHRNB4
Caspase activation via Dependence Receptors in the absence of ligand216.4×0.389UNC5B, DCC
Negative regulation of activity of TFAP2 (AP-2) family transcription factors216.4×0.389TFAP2B, TFAP2D
Highly calcium permeable postsynaptic nicotinic acetylcholine receptors214.9×0.389CHRNA3, CHRNB4
Presynaptic nicotinic acetylcholine receptors213.7×0.389CHRNA3, CHRNB4
Activation of the TFAP2 (AP-2) family of transcription factors213.7×0.389TFAP2B, TFAP2D
Formation of neuronal progenitor and neuronal BAF (npBAF and nBAF)39.9×0.389SMARCA2, BCL11A, BCL11B
Chromatin organization63.5×0.389ATXN7, SMARCA2, SUPT3H, KDM3B, KDM4A, KDM4D
SARS-CoV-2 Infection63.5×0.389ST3GAL3, SRPK2, YWHAZ, ANO3, ANO4, ANO5
Transport of small molecules122.2×0.389SEM1, SLC6A9, SLC4A10, ANO3, SLC28A3, SLC9A9, SLC39A8, SLC5A9 (+4 more)
Defective CYP24A1 causes HCAI182.2×0.397CYP24A1
Defective SLC9A9 causes autism 16 (AUTS16)182.2×0.397SLC9A9
Acetylcholine binding and downstream events211.7×0.397CHRNA3, CHRNB4
Postsynaptic nicotinic acetylcholine receptors211.7×0.397CHRNA3, CHRNB4
Regulation of mRNA stability by proteins that bind AU-rich elements210.9×0.397SEM1, YWHAZ
Phase 2 - plateau phase210.9×0.397CACNA1C, CACNB2
NCAM signaling for neurite out-growth35.9×0.397CACNA1C, CACNA1I, CACNB2
Chromatin modifying enzymes63.1×0.397ATXN7, SMARCA2, SUPT3H, KDM3B, KDM4A, KDM4D
NCAM1 interactions35.4×0.487CACNA1C, CACNA1I, CACNB2
Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors29.1×0.488TFAP2B, TFAP2D
Stimuli-sensing channels43.9×0.488ANO3, ANO4, SLC9B1, ANO5
Modulation of host responses by IFN-stimulated genes28.7×0.504IFI44, IFI44L
Formation of the embryonic stem cell BAF (esBAF) complex28.7×0.504BCL11A, BCL11B
HDMs demethylate histones34.9×0.506KDM3B, KDM4A, KDM4D

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 231 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO termCohort genesFoldFDRSample cohort genes
neuron cell-cell adhesion417.2×0.085TNR, NLGN1, ASTN2, CNTN4
calcium activated galactosylceramide scrambling248.6×0.168ANO3, ANO4
membrane depolarization during atrial cardiac muscle cell action potential248.6×0.168CACNA1C, CACNB2
synaptic transmission involved in micturition236.5×0.168CHRNA3, CHRNB4
positive regulation of adenylate cyclase activity229.2×0.168STIM1, CACNA1C
calcium activated phosphatidylcholine scrambling229.2×0.168ANO3, ANO4
membrane depolarization during AV node cell action potential229.2×0.168CACNA1C, CACNB2
Golgi reassembly229.2×0.168YWHAZ, VPS13B
detection of mechanical stimulus315.6×0.168ANO3, PKD1L2, PKD1L3
nucleus organization49.7×0.168ATXN7, SYNE1, WDR73, CFAP43
monoatomic ion transmembrane transport65.4×0.168ANO3, CHRNA3, CHRNB4, ANO4, SLC9B1, ANO5
neuron migration74.0×0.168MARK2, MAP1B, SEMA3A, ASTN2, CEP85L, KIRREL3, DCC
nervous system development132.6×0.168RXRG, SMARCA2, TCF4, TFAP2B, TNR, HDAC4, NLGN1, RBFOX1 (+5 more)
commitment of neuronal cell to specific neuron type in forebrain224.3×0.191TBR1, BCL11B
anterior/posterior axon guidance224.3×0.191UNC5B, DCC
brain development93.1×0.191RTN1, TBR1, IMMP2L, ARNT2, NEGR1, GSX1, CNTN4, CXCR4 (+1 more)
visual perception93.1×0.191CNNM4, ATXN7, SLC4A10, CACNB2, RIMS1, SPATA7, POU6F2, CRYBA1 (+1 more)
negative regulation of neuron projection development55.1×0.193SEMA3A, TNR, BCL11A, PRAG1, DCC
synaptic vesicle exocytosis39.9×0.193BRAF, PCLO, RIMS1
regulation of neurotransmitter secretion39.9×0.193RIMS1, CHRNB4, MCTP2
positive regulation of muscle contraction220.8×0.201CACNA1C, CACNB2
positive regulation of transmission of nerve impulse220.8×0.201TNR, CHRNB4
camera-type eye development46.2×0.201FOXP2, CACNA1C, FBN3, WDPCP
head morphogenesis218.2×0.229BRAF, VPS13B
negative regulation of dendrite development218.2×0.229BCL11A, DCC
postsynaptic modulation of chemical synaptic transmission38.8×0.229BRAF, SORCS3, DCC
specification of animal organ identity173.0×0.231TBR1
regulation of acetylcholine secretion, neurotransmission173.0×0.231CHRNA3
pyrimidine nucleoside transport173.0×0.231SLC28A3
developmental maturation173.0×0.231MAP1B

Therapeutics

Drugs indicated for this disease

18 approved, 12 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.

DrugDevelopment status
AcetylcarnitineApproved (phase 4)
AmphetamineApproved (phase 4)
ArmodafinilApproved (phase 4)
AtomoxetineApproved (phase 4)
CaffeineApproved (phase 4)
DexmethylphenidateApproved (phase 4)
DextroamphetamineApproved (phase 4)
FipexideApproved (phase 4)
IdebenoneApproved (phase 4)
LisdexamfetamineApproved (phase 4)
MethamphetamineApproved (phase 4)
MethylphenidateApproved (phase 4)
ModafinilApproved (phase 4)
PemolineApproved (phase 4)
PiracetamApproved (phase 4)
PyritinolApproved (phase 4)
SolriamfetolApproved (phase 4)
VinpocetineApproved (phase 4)
BupropionPhase 3 (in late-stage trials)
CentanafadinePhase 3 (in late-stage trials)
CiticolinePhase 3 (in late-stage trials)
ClonidinePhase 3 (in late-stage trials)
DasotralinePhase 3 (in late-stage trials)
DoconexentPhase 3 (in late-stage trials)
Maritime PinePhase 3 (in late-stage trials)
MelatoninPhase 3 (in late-stage trials)
MolindonePhase 3 (in late-stage trials)
OMEGA-3 FATTY ACIDSPhase 3 (in late-stage trials)
OMEGA-3-ACID ETHYL ESTERSPhase 3 (in late-stage trials)
ZolpidemPhase 3 (in late-stage trials)

Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Amantadine, Ampreloxetine, Aripiprazole, Buspirone, Droxidopa, Duloxetine, Edivoxetine, Guanfacine, Lactose, Anhydrous, Levomefolic Acid, Mazindol, Oxiracetam, Pyridoxine, Quetiapine, Reboxetine, St. John’S Wort, Sucrose, Theanine, Vortioxetine.

Drug target analysis

Approved (phase 4): 17 · Phase ≥3: 17 · Phased (≥1): 19 · Undrugged: 55

Druggability breadth: 66 of 250 evidence-associated genes (26%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Genes with an approved drug

The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.

SymbolExample approved molecule
MARK2MOMELOTINIB
RPL17GENTAMICIN SULFATE
RPL23GENTAMICIN SULFATE
RXRGBEXAROTENE
BMPR1BMOMELOTINIB
SEM1BORTEZOMIB
SHMT2OXAPROZIN
BRAFVEMURAFENIB
SLC6A9GLYCINE
SRPK2FEDRATINIB
STIM1TERIFLUNOMIDE
DAGLAORLISTAT
UGT1A9DICLOFENAC
CACNA1CREMIFENTANIL
CACNA1INIMODIPINE
CACNB2NIMODIPINE
HDAC4CELECOXIB

Top cohort targets by molecule count

SymbolMoleculesMax phase
CACNA1C854
BRAF484
MARK2454
HDAC4314
BMPR1B284
SRPK2114
SHMT274
CACNA1I74
RXRG64
SLC6A964

Drugs targeting cohort genes (top 30)

MoleculeMax phaseTargets in cohort
MOMELOTINIB4BMPR1B, MARK2
FEDRATINIB4BMPR1B, BRAF, MARK2, SRPK2
RUXOLITINIB4BMPR1B, BRAF, MARK2
BARICITINIB4MARK2
TOFACITINIB4MARK2
BRIGATINIB4MARK2
NINTEDANIB4MARK2, SRPK2
SUNITINIB4BMPR1B, CACNA1C, MARK2, SRPK2
MIDOSTAURIN4MARK2, SRPK2
GENTAMICIN SULFATE4RPL17, RPL23
BEXAROTENE4RXRG
OXAPROZIN4RXRG, SHMT2
TRETINOIN4RXRG
ALITRETINOIN4RXRG
AXITINIB4BMPR1B
VANDETANIB4BMPR1B
GILTERITINIB4BMPR1B
PAZOPANIB4BMPR1B, BRAF
DASATINIB4BMPR1B, BRAF, CACNA1C
QUIZARTINIB4BMPR1B
CRIZOTINIB4BMPR1B
BORTEZOMIB4SEM1
CARFILZOMIB4SEM1
DULOXETINE4CACNA1C, SHMT2
PYRVINIUM4SHMT2
FLUPIRTINE4SHMT2
METHOTREXATE4SHMT2
PRIMAQUINE4SHMT2
VEMURAFENIB4BRAF
PONATINIB4BRAF

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 12.

Cohort genes with ChEMBL bioactivity (full, sorted by assay count)

SymbolAssaysType breakdown
HDAC41,941Binding:1919, ADMET:13, Functional:6, Toxicity:3
BRAF1,442Binding:1400, Functional:37, ADMET:5
CACNA1C575Binding:319, Functional:211, Toxicity:26, ADMET:19
MARK2356Binding:355, Functional:1
SMARCA2311Binding:274, Functional:25, ADMET:12
SRPK2221Binding:221
RXRG193Binding:169, Functional:24
BMPR1B166Binding:164, ADMET:2
UGT1A9153ADMET:149, Binding:4
ELOC97Binding:97
RPL1790Binding:90
RPL2390Binding:90
SLC6A988Binding:83, Functional:5
CACNA1I56Binding:44, Functional:9, ADMET:3
DAGLA48Binding:48
STIM135Binding:33, Functional:1, ADMET:1
TCF431Binding:31
SEM126Binding:26
YWHAZ23Binding:23
CACNB222Binding:20, ADMET:1, Toxicity:1
UBE2D318Binding:18
STIP113Binding:13
KDM3B13Binding:13
MAP1B10Binding:6, Functional:4
SHMT26Binding:6
ATXN75Binding:5
TLL25Binding:5
TNFRSF10A3Binding:3
ST3GAL32Binding:2
UPF11Binding:1
TFEB1Binding:1
VAV11Binding:1

Cohort enzymes (BRENDA EC)

SymbolEC numbersNames
UPF13.6.4.13RNA helicase
CNNM47.2.2.14P-type Mg2+ transporter
BMPR1B2.7.10.2non-specific protein-tyrosine kinase
SHMT22.1.2.1glycine hydroxymethyltransferase
ST3GAL32.4.99.2, 2.4.99.6beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3-sialyltransferase, N-acetyllactosaminide alpha-2,3-sialyltransferase
BRAF2.7.10.2, 2.7.11.1non-specific protein-tyrosine kinase, non-specific serine/threonine protein kinase
TCF47.6.2.3ABC-type glutathione-S-conjugate transporter
DAGLA3.1.1.116sn-1-specific diacylglycerol lipase
UBE2D32.3.2.23, 2.3.2.24E2 ubiquitin-conjugating enzyme, (E3-independent) E2 ubiquitin-conjugating enzyme
UGT1A92.4.1.17glucuronosyltransferase
KDM3B1.14.11.65[histone H3]-dimethyl-L-lysine9 demethylase
HDAC43.5.1.98histone deacetylase

Cohort genes with high screening signal

≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.

SymbolChEMBL assays
MARK2356
RXRG193
BMPR1B166
BRAF1,442
SMARCA2311
SRPK2221
UGT1A9153
CACNA1C575
HDAC41,941

Pharmacogenomics

Cohort genes with a PharmGKB record: 74; with CPIC/DPWG dosing guidelines: 0.

No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).

Chemical tractability of cohort targets

30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

CompoundMax phaseCohort target (bioactivity)
MOMELOTINIB4BMPR1B, MARK2
FEDRATINIB4BMPR1B, BRAF, MARK2, SRPK2
RUXOLITINIB4BMPR1B, BRAF, MARK2
BARICITINIB4MARK2
TOFACITINIB4MARK2
BRIGATINIB4MARK2
NINTEDANIB4MARK2, SRPK2
SUNITINIB4BMPR1B, CACNA1C, MARK2, SRPK2
MIDOSTAURIN4MARK2, SRPK2
GENTAMICIN SULFATE4RPL17, RPL23
BEXAROTENE4RXRG
OXAPROZIN4RXRG, SHMT2
TRETINOIN4RXRG
ALITRETINOIN4RXRG
AXITINIB4BMPR1B
VANDETANIB4BMPR1B
GILTERITINIB4BMPR1B
PAZOPANIB4BMPR1B, BRAF
DASATINIB4BMPR1B, BRAF, CACNA1C
QUIZARTINIB4BMPR1B
CRIZOTINIB4BMPR1B
BORTEZOMIB4SEM1
CARFILZOMIB4SEM1
DULOXETINE4CACNA1C, SHMT2
PYRVINIUM4SHMT2
FLUPIRTINE4SHMT2
METHOTREXATE4SHMT2
PRIMAQUINE4SHMT2
VEMURAFENIB4BRAF
PONATINIB4BRAF

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

TierDefinitionGenesSymbols
AApproved (phase 4 drug)17MARK2, RPL17, RPL23, RXRG, BMPR1B, SEM1, SHMT2, BRAF, SLC6A9, SRPK2 (+7 more)
BPhased (≥1) drug, not yet approved2SMARCA2, TCF4
CDruggable family + PDB, no drug6UPF1, CNNM4, TNR, UBE2D3, KDM3B, CSMD1
DDruggable family + AlphaFold only, no drug8CSMD2, SEMA3A, ST3GAL3, TLL2, UNC5B, FOLH1B, OR14J1, IMMP2L
EDifficult family or no structure, no drug41TCF20, MAP1B, RGS6, CNNM2, RTN1, ATXN7, SOX5, SP4, STIP1, SUPT3H (+31 more)

Undrugged target profiles

55 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

SymbolChEMBL assaysDrugged partners (top 3)
YWHAZ23BRAF
TCF200
CSMD20
MAP1B10
UPF11
RGS60
CNNM20
RTN10
CNNM40
ATXN75
SEMA3A0
ST3GAL32
SOX50
SP40
STIP113
SUPT3H0
TBR10
ELOC97
ELP40
TFAP2B0
TFEB1
FERRY30
TLL25
TNFRSF10A3
TNFRSF10D0
TNR0
UBE2D318
UNC5B0
VAV11
MIR99AHG0

Clinical trials & evidence

Clinical trials

Clinical trials: 1,257.

Phase distribution (across all retrieved trials)

PhaseTrials
Not specified615
PHASE4168
PHASE3152
PHASE275
PHASE138
PHASE1/PHASE220
PHASE2/PHASE316
EARLY_PHASE116

Top trials by phase / activity

NCTPhaseStatusTitle
NCT03420339PHASE4RECRUITINGStimulant Effects on Disruptive Behavior
NCT03781752PHASE4RECRUITINGCarboxylesterase 1 Genetic Variation and Methylphenidate in ADHD
NCT03781765PHASE4RECRUITINGStimulant vs. Non-stimulant Treatments and Reward Processing in Drug-naive Youth at SUD Risk
NCT04219280PHASE4RECRUITINGEvaluating Treatment of ADHD in Children with Down Syndrome
NCT04781140PHASE4RECRUITINGEvaluation of SPN-812 (Viloxazine Extended-release Capsule) in Preschool-age Children With ADHD
NCT05469386PHASE4ACTIVE_NOT_RECRUITINGSingle and Combined Effects of Behavioral, Academic, and Medication Treatments for ADHD in the Classroom
NCT05916339PHASE4RECRUITINGAWARE: Management of ADHD in Autism Spectrum Disorder
NCT06248229PHASE4RECRUITINGA Trial of Dyanavel XR in Treating Co-occurring Fatigue Symptoms in Adults With Attention Deficit Hyperactivity Disorder (ADHD).
NCT06577779PHASE4RECRUITINGAn Open-Label Treatment With Randomization Observation, Investigator-Initiated Study, on the Duration and Efficacy of Jornay PM (Methylphenidate Hydrochloride Extended-Release Capsules) on Adult ADHD Symptoms and Executive Function and Emotional Regulation Throughout the Day Into Early Evening
NCT06853665PHASE4RECRUITINGThe TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine
NCT07044609PHASE4NOT_YET_RECRUITINGA Study to Assess the Effectiveness and Safety of Clonidine Extended-Release OnydaTM XR in Children With ADHD and ODD
NCT07121621PHASE4NOT_YET_RECRUITINGPHArmaCokinetics of methYLphenidate in Adult Patients With Attention-Deficit /Hyperactivity Disorder
NCT07169760PHASE4RECRUITINGR61/33 - VR Study Phase 4
NCT00152750PHASE4UNKNOWNStudy of Clonidine on Sleep Architecture in Children With Tourette’s Syndrome (TS) and Comorbid ADHD
NCT00181571PHASE4COMPLETEDA Double-Blind Comparison of Concerta and Placebo in Adults With Attention Deficit Hyperactivity Disorder
NCT00181675PHASE4COMPLETEDA Double-Blind Comparison of Galantamine HBr and Placebo in Adults With Attention Deficit Hyperactivity Disorder
NCT00181714PHASE4COMPLETEDPrevention of Cigarette Smoking in Attention Deficit Hyperactivity Disorder (ADHD) Youth With Concerta
NCT00181948PHASE4COMPLETEDStrattera Treatment in Children With ADHD Who Have Poor Response to Stimulant Therapy
NCT00181987PHASE4COMPLETEDConcerta in the Treatment of ADHD in Youth and Adults With Bipolar Disorder
NCT00190736PHASE4COMPLETEDEfficacy and Safety of Once-Daily Atomoxetine Hydrochloride in Adults With ADHD Over an Extended Period of Time (6 Months)
NCT00190775PHASE4COMPLETEDA Randomized, Double-Blind Comparison of Placebo and Atomoxetine Hydrochloride Given Once a Day in Adults With Attention-Deficit/Hyperactivity Disorder (ADHD)
NCT00190879PHASE4COMPLETEDPlacebo-Controlled Study of Atomoxetine Hydrochloride in the Treatment of Adults With ADHD and Comorbid Social Anxiety Disorder
NCT00190957PHASE4COMPLETEDAtomoxetine Treatment of Adults With ADHD and Comorbid Alcohol Abuse
NCT00191035PHASE4COMPLETEDMaintenance of Benefit With Atomoxetine Hydrochloride in Adolescents With ADHD
NCT00191048PHASE4COMPLETEDTreatment With Atomoxetine Hydrochloride in Children and Adolescents With ADHD
NCT00191633PHASE4COMPLETEDStudy of Atomoxetine in Children With ADHD to Assess Symptomatic and Functional Outcomes
NCT00191906PHASE4COMPLETEDComparison of Atomoxetine and Placebo in Children With Attention-Deficit/Hyperactivity Disorder (ADHD) and/or Reading Disorder (RD)
NCT00216918PHASE4COMPLETEDNeuropsychological Functioning in Children With Attention-Deficit/Hyperactivity Disorder.
NCT00221962PHASE4COMPLETEDStudy of Aripiprazole (Abilify) in Children With ADHD (Attention Deficit Hyperactivity Disorder)
NCT00223561PHASE4COMPLETEDMethylphenidate and Driving Ability in Adult Patients With Attention-Deficit Hyperactivity Disorder
NCT00299234PHASE4TERMINATEDAtomoxetine for Children With Acquired Attentional Disorders Following Completion of Chemotherapy for ALL
NCT00302406PHASE4COMPLETEDNaturalistic Substitution of Concerta in Adult Subject With ADHD Receiving Immediate Release Methylphenidate
NCT00305370PHASE4COMPLETEDAripiprazole Associated With Methylphenidate in Children and Adolescents With Bipolar Disorder and ADHD
NCT00381758PHASE4COMPLETEDThe COMACS Study: A Comparison of Methylphenidates in an Analog Classroom Setting
NCT00406354PHASE4COMPLETEDComparison of Atomoxetine Versus Placebo in Children and Adolescents With ADHD and Comorbid ODD in Germany
NCT00434213PHASE4COMPLETEDCharacterization of Dermal Reactions in Pediatric Patients With ADHD Using DAYTRANA
NCT00468143PHASE4COMPLETEDA Within-Subject Cross-Over Comparison Between Immediate Release and Extended Release Adderall
NCT00471354PHASE4COMPLETEDA Study for Patients With Attention-Deficit/Hyperactivity Disorder Treated With Atomoxetine
NCT00483106PHASE4COMPLETEDClinical and Pharmacogenetic Study of Attention Deficit With Hyperactivity Disorder (ADHD)
NCT00485849PHASE4COMPLETEDA Study of Atomoxetine for Attention Deficit and Hyperactive/Impulsive Behaviour Problems in Children With ASD

Drugs tested across these trials (top 30)

MoleculeMax phaseTrials referencing
ATOMOXETINE4155
METHYLPHENIDATE4134
LISDEXAMFETAMINE444
GUANFACINE415
NALTREXONE412
VILOXAZINE HYDROCHLORIDE49
AMPHETAMINE46
BUPROPION46
DEXMETHYLPHENIDATE46
SOLRIAMFETOL46
MOLINDONE45
DEXTROAMPHETAMINE44
MELATONIN44
MEMANTINE44
MODAFINIL44
CARIPRAZINE43
ARIPIPRAZOLE42
CALCITRIOL42
CLONIDINE HYDROCHLORIDE42
ESZOPICLONE42
LEVAMFETAMINE42
PYRIDOXINE42
VARENICLINE42
ZOPICLONE42
AMANTADINE41
AMILORIDE41
BREXPIPRAZOLE41
CARBIDOPA41
CARBIDOPA ANHYDROUS41
CLONIDINE41