autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency
diseaseOn this page
Also known as ALPS due to CTLA4 haploinsufficiencyALPS type 5ALPS type VALPS5autoimmune lymphoproliferative syndrome type 5autoimmune lymphoproliferative syndrome type Vautoimmune lymphoproliferative syndrome, type VCHAICTLA-4 haploinsufficiency with autoimmune infiltration diseaseCTLA4 haploinsufficiencyimmune dysregulation with autoimmunity, immunodeficiency, and lymphoproliferation
Summary
autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency (MONDO:0014493) is a disease caused by CTLA4 (GenCC Strong), with 4 cohort genes and 3 clinical trials.
At a glance
- Prevalence: <1 / 1 000 000 (Worldwide) [Orphanet-validated]
- Causal gene: CTLA4 (GenCC Strong)
- Cohort genes: 4
- ClinVar variants: 271
- Phenotypes (HPO): 31
- Clinical trials: 3
Clinical features
Epidemiology
Prevalence records
2 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Cases/families | 17 | Worldwide | Validated | |
| Point prevalence | <1 / 1 000 000 | Worldwide | Validated |
Signs & symptoms
Clinical features (HPO)
31 HPO clinical features (Orphanet curated; top 31 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0004313 | Decreased circulating antibody level | Very frequent (80-99%) |
| HP:0001047 | Atopic dermatitis | Frequent (30-79%) |
| HP:0001744 | Splenomegaly | Frequent (30-79%) |
| HP:0001890 | Autoimmune hemolytic anemia | Frequent (30-79%) |
| HP:0001973 | Autoimmune thrombocytopenia | Frequent (30-79%) |
| HP:0002014 | Diarrhea | Frequent (30-79%) |
| HP:0002090 | Pneumonia | Frequent (30-79%) |
| HP:0002240 | Hepatomegaly | Frequent (30-79%) |
| HP:0002716 | Lymphadenopathy | Frequent (30-79%) |
| HP:0002720 | Decreased circulating IgA level | Frequent (30-79%) |
| HP:0002783 | Recurrent lower respiratory tract infections | Frequent (30-79%) |
| HP:0002788 | Recurrent upper respiratory tract infections | Frequent (30-79%) |
| HP:0002850 | Decreased circulating total IgM | Frequent (30-79%) |
| HP:0004315 | Decreased circulating IgG level | Frequent (30-79%) |
| HP:0000964 | Eczematoid dermatitis | Occasional (5-29%) |
| HP:0001510 | Growth delay | Occasional (5-29%) |
| HP:0001904 | Neutropenia in presence of anti-neutropil antibodies | Occasional (5-29%) |
| HP:0002037 | Inflammation of the large intestine | Occasional (5-29%) |
| HP:0002110 | Bronchiectasis | Occasional (5-29%) |
| HP:0002582 | Atrophic gastritis | Occasional (5-29%) |
| HP:0002665 | Lymphoma | Occasional (5-29%) |
| HP:0003765 | Psoriasiform dermatitis | Occasional (5-29%) |
| HP:0005401 | Recurrent candida infections | Occasional (5-29%) |
| HP:0032216 | Lymphocytic infiltration of the colorectal mucosa | Occasional (5-29%) |
| HP:0100280 | Crohn’s disease | Occasional (5-29%) |
| HP:0100646 | Thyroiditis | Occasional (5-29%) |
| HP:0100651 | Type I diabetes mellitus | Occasional (5-29%) |
| HP:0100806 | Sepsis | Occasional (5-29%) |
| HP:0002069 | Bilateral tonic-clonic seizure | Very rare (<1-4%) |
| HP:0012410 | Pure red cell aplasia | Very rare (<1-4%) |
| HP:0100653 | Optic neuritis | Very rare (<1-4%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency |
| Mondo ID | MONDO:0014493 |
| OMIM | 616100 |
| Orphanet | 436159 |
| NCIT | C126341 |
| UMLS | C4015214 |
| MedGen | 863651 |
| GARD | 0012316 |
| Is cancer (heuristic) | no |
Also known as: ALPS due to CTLA4 haploinsufficiency · ALPS type 5 · ALPS type V · ALPS5 · autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency · autoimmune lymphoproliferative syndrome type 5 · autoimmune lymphoproliferative syndrome type V · autoimmune lymphoproliferative syndrome, type V · CHAI · chai · CTLA-4 haploinsufficiency with autoimmune infiltration disease · CTLA4 haploinsufficiency · immune dysregulation with autoimmunity, immunodeficiency, and lymphoproliferation
Data availability: 271 ClinVar variants · 37 ClinGen variant curations · 3 GenCC gene-disease records.
Disease family
Classification path: disease › human disease › disease by body system or component › immune system disorder › hypersensitivity reaction disease › type IV hypersensitivity disease › autoimmune lymphoproliferative syndrome › autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency
Related subtypes (8): autoimmune lymphoproliferative syndrome type 1, autoimmune lymphoproliferative syndrome type 2A, autoimmune lymphoproliferative syndrome type 2B, autoimmune lymphoproliferative syndrome type 4, Castleman-Kojima disease, FAS-related autoimmune lymphoproliferative immune disorder, type 3 autoimmune lymphoproliferative syndrome, autoimmune lymphoproliferative syndrome, type III caused by mutation in PRKCD
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
271 retrieved; paginated sample, class counts are floors:
118 uncertain significance, 63 likely benign, 40 pathogenic, 19 benign, 18 likely pathogenic, 10 conflicting classifications of pathogenicity, 3 pathogenic/likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 833421 | NC_000002.12:g.(?203444868)(203957883_?)del | CD28 | Pathogenic | criteria provided, single submitter |
| 1029948 | NM_005214.5(CTLA4):c.226C>T (p.Gln76Ter) | CTLA4 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1071971 | NC_000002.11:g.(?204731519)(204732794_?)del | CTLA4 | Pathogenic | criteria provided, single submitter |
| 1439020 | NM_005214.5(CTLA4):c.71_72del (p.Leu24fs) | CTLA4 | Pathogenic | reviewed by expert panel |
| 1449408 | NM_005214.5(CTLA4):c.238C>T (p.Gln80Ter) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 161109 | NM_005214.5(CTLA4):c.151C>T (p.Arg51Ter) | CTLA4 | Pathogenic | reviewed by expert panel |
| 161110 | NM_005214.5(CTLA4):c.75del (p.Leu28fs) | CTLA4 | Pathogenic | reviewed by expert panel |
| 161111 | NM_005214.5(CTLA4):c.567+5G>C | CTLA4 | Pathogenic | no assertion criteria provided |
| 161112 | NM_005214.5(CTLA4):c.105C>A (p.Cys35Ter) | CTLA4 | Pathogenic | reviewed by expert panel |
| 161114 | NM_005214.5(CTLA4):c.208C>T (p.Arg70Trp) | CTLA4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2097298 | NM_005214.5(CTLA4):c.216dup (p.Val73fs) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 2128011 | NM_005214.5(CTLA4):c.160G>C (p.Ala54Pro) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 2151958 | NM_005214.5(CTLA4):c.450T>G (p.Tyr150Ter) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 2151959 | NM_005214.5(CTLA4):c.494G>A (p.Trp165Ter) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 2425320 | NC_000002.11:g.(?204734049)(204737535_?)del | CTLA4 | Pathogenic | criteria provided, single submitter |
| 2704586 | NM_005214.5(CTLA4):c.415T>C (p.Tyr139His) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 280759 | NM_005214.5(CTLA4):c.60G>A (p.Trp20Ter) | CTLA4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3384671 | NM_005214.5(CTLA4):c.346del (p.Ile116fs) | CTLA4 | Pathogenic | no assertion criteria provided |
| 3722056 | NM_005214.5(CTLA4):c.271dup (p.Met91fs) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 4277914 | NM_005214.5(CTLA4):c.2T>C (p.Met1Thr) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 4683125 | NM_005214.5(CTLA4):c.94_101delinsTTCTCTTCATCA (p.Pro32fs) | CTLA4 | Pathogenic | reviewed by expert panel |
| 4683126 | NM_005214.5(CTLA4):c.361del (p.Ala121fs) | CTLA4 | Pathogenic | reviewed by expert panel |
| 4718120 | NM_005214.5(CTLA4):c.123_124delinsTT (p.Gln42Ter) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 4719495 | NM_005214.5(CTLA4):c.174_175del (p.Cys58_Glu59delinsTer) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 4732004 | NM_005214.5(CTLA4):c.148_165del (p.Ser50_Ser55del) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 475277 | NM_005214.5(CTLA4):c.420C>A (p.Tyr140Ter) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 495051 | NM_005214.5(CTLA4):c.412C>A (p.Pro138Thr) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 572851 | NM_005214.5(CTLA4):c.211del (p.Arg70_Val71insTer) | CTLA4 | Pathogenic | criteria provided, single submitter |
| 636389 | NM_005214.5(CTLA4):c.457G>A (p.Asp153Asn) | CTLA4 | Pathogenic | reviewed by expert panel |
| 644629 | NM_005214.5(CTLA4):c.81dup (p.Leu28fs) | CTLA4 | Pathogenic | reviewed by expert panel |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 4 · Orphanet: 10 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| CTLA4 | Strong | Autosomal dominant | autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency | 4 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| CTLA4 | Orphanet:2584 | Classic mycosis fungoides |
| CTLA4 | Orphanet:3162 | Sézary syndrome |
| CTLA4 | Orphanet:391490 | Adult-onset myasthenia gravis |
| CTLA4 | Orphanet:436159 | Autoimmune lymphoproliferative syndrome due to CTLA4 haploinsuffiency |
| CTLA4 | Orphanet:536 | Systemic lupus erythematosus |
| CTLA4 | Orphanet:900 | Granulomatosis with polyangiitis |
| CD28 | Orphanet:2584 | Classic mycosis fungoides |
| CD28 | Orphanet:3162 | Sézary syndrome |
| KCNH2 | Orphanet:101016 | Romano-Ward syndrome |
| KCNH2 | Orphanet:51083 | Congenital short QT syndrome |
Cohort genes → proteins
4 cohort genes, 4 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 4 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| CTLA4 | HGNC:2505 | ENSG00000163599 | P16410 | Cytotoxic T-lymphocyte protein 4 | gencc,clinvar |
| STRADB | HGNC:13205 | ENSG00000082146 | Q9C0K7 | STE20-related kinase adapter protein beta | clinvar |
| CD28 | HGNC:1653 | ENSG00000178562 | P10747 | T-cell-specific surface glycoprotein CD28 | clinvar |
| KCNH2 | HGNC:6251 | ENSG00000055118 | Q12809 | Voltage-gated inwardly rectifying potassium channel KCNH2 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| CTLA4 | Cytotoxic T-lymphocyte protein 4 | Inhibitory receptor acting as a major negative regulator of T-cell responses. |
| STRADB | STE20-related kinase adapter protein beta | Pseudokinase which, in complex with CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta), binds to and activates STK11/LKB1. |
| CD28 | T-cell-specific surface glycoprotein CD28 | Receptor that plays a role in T-cell activation, proliferation, survival and the maintenance of immune homeostasis. |
| KCNH2 | Voltage-gated inwardly rectifying potassium channel KCNH2 | Pore-forming (alpha) subunit of voltage-gated inwardly rectifying potassium channel. |
Protein-family classification
Druggable: 4 · Difficult: 0 · Unknown: 0 · Druggable fraction: 1.0
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Antibody/Immunoglobulin | 2 | 14.6× | 0.020 |
| Ion channel | 1 | 27.9× | 0.053 |
| Kinase | 1 | 6.9× | 0.137 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| CTLA4 | Antibody/Immunoglobulin | yes | Ig_sub, CTLA4, Ig_V-set | |
| STRADB | Kinase | yes | Prot_kinase_dom, Kinase-like_dom_sf, STRAD_A/B-like | |
| CD28 | Antibody/Immunoglobulin | yes | CD28, Ig_V-set, Ig-like_fold | |
| KCNH2 | Ion channel | yes | PAS, cNMP-bd_dom, PAS-assoc_C |
Expression context
Cohort genes with no expression data: 0.
4 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 4 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| lymph node | 2 |
| vermiform appendix | 2 |
| buccal mucosa cell | 1 |
| adrenal tissue | 1 |
| right adrenal gland | 1 |
| right adrenal gland cortex | 1 |
| blood | 1 |
| apex of heart | 1 |
| cardiac atrium | 1 |
| right atrium auricular region | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| CTLA4 | 164 | tissue_specific | marker | lymph node, vermiform appendix, buccal mucosa cell |
| STRADB | 140 | ubiquitous | marker | adrenal tissue, right adrenal gland cortex, right adrenal gland |
| CD28 | 154 | broad | marker | lymph node, vermiform appendix, blood |
| KCNH2 | 211 | broad | marker | apex of heart, right atrium auricular region, cardiac atrium |
Protein interactions among cohort
Intra-cohort edges: 1.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| CTLA4 | 3,863 |
| CD28 | 2,958 |
| KCNH2 | 1,932 |
| STRADB | 882 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| CD28 | CTLA4 | intact, string_interaction |
Structural data
PDB: 3 · AlphaFold-only: 1 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| KCNH2 | Q12809 | 24 |
| CTLA4 | P16410 | 22 |
| CD28 | P10747 | 10 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| STRADB | Q9C0K7 | 74.39 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 32. Enrichment computed across 4 evidence-associated genes (4 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Co-stimulation by CD28 | 2 | 190.3× | 0.001 | CTLA4, CD28 |
| Nef mediated downregulation of CD28 cell surface expression | 1 | 1427.5× | 0.011 | CD28 |
| Phase 3 - rapid repolarisation | 1 | 285.5× | 0.028 | KCNH2 |
| RUNX1 and FOXP3 control the development of regulatory T lymphocytes (Tregs) | 1 | 285.5× | 0.028 | CTLA4 |
| CD28 dependent Vav1 pathway | 1 | 219.6× | 0.029 | CD28 |
| Nef-mediates down modulation of cell surface receptors by recruiting them to clathrin adapters | 1 | 158.6× | 0.029 | CD28 |
| The role of Nef in HIV-1 replication and disease pathogenesis | 1 | 158.6× | 0.029 | CD28 |
| Co-inhibition by CTLA4 | 1 | 129.8× | 0.029 | CTLA4 |
| Regulation of T cell activation by CD28 family | 1 | 105.7× | 0.029 | CD28 |
| Energy dependent regulation of mTOR by LKB1-AMPK | 1 | 98.5× | 0.029 | STRADB |
| CD28 dependent PI3K/Akt signaling | 1 | 98.5× | 0.029 | CD28 |
| PI3K/AKT Signaling in Cancer | 1 | 92.1× | 0.029 | CD28 |
| Host Interactions of HIV factors | 1 | 84.0× | 0.029 | CD28 |
| Negative regulation of the PI3K/AKT network | 1 | 69.6× | 0.032 | CD28 |
| MTOR signalling | 1 | 66.4× | 0.032 | STRADB |
| Voltage gated Potassium channels | 1 | 60.7× | 0.033 | KCNH2 |
| Potassium Channels | 1 | 33.6× | 0.055 | KCNH2 |
| Constitutive Signaling by Aberrant PI3K in Cancer | 1 | 31.7× | 0.055 | CD28 |
| HIV Infection | 1 | 29.7× | 0.056 | CD28 |
| Cardiac conduction | 1 | 27.2× | 0.058 | KCNH2 |
| PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling | 1 | 24.2× | 0.062 | CD28 |
| Intracellular signaling by second messengers | 1 | 22.8× | 0.063 | CD28 |
| Muscle contraction | 1 | 19.3× | 0.068 | KCNH2 |
| Signal Transduction | 2 | 5.1× | 0.068 | STRADB, CD28 |
| PIP3 activates AKT signaling | 1 | 16.7× | 0.075 | CD28 |
| Diseases of signal transduction by growth factor receptors and second messengers | 1 | 14.2× | 0.084 | CD28 |
| Neuronal System | 1 | 11.1× | 0.104 | KCNH2 |
| Viral Infection Pathways | 1 | 7.7× | 0.141 | CD28 |
| Adaptive Immune System | 1 | 7.5× | 0.141 | CD28 |
| Infectious disease | 1 | 6.2× | 0.162 | CD28 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| regulation of heart rate by hormone | 1 | 2106.5× | 0.011 | KCNH2 |
| positive regulation of inflammatory response to antigenic stimulus | 1 | 1404.3× | 0.011 | CD28 |
| negative regulation of regulatory T cell differentiation | 1 | 842.6× | 0.011 | CTLA4 |
| negative regulation of potassium ion export across plasma membrane | 1 | 601.9× | 0.011 | KCNH2 |
| regulatory T cell differentiation | 1 | 526.6× | 0.011 | CD28 |
| CD4-positive, alpha-beta T cell proliferation | 1 | 468.1× | 0.011 | CD28 |
| regulation of regulatory T cell differentiation | 1 | 468.1× | 0.011 | CD28 |
| membrane depolarization during action potential | 1 | 421.3× | 0.011 | KCNH2 |
| membrane repolarization during action potential | 1 | 421.3× | 0.011 | KCNH2 |
| membrane repolarization during cardiac muscle cell action potential | 1 | 421.3× | 0.011 | KCNH2 |
| membrane repolarization during ventricular cardiac muscle cell action potential | 1 | 421.3× | 0.011 | KCNH2 |
| positive regulation of CD4-positive, alpha-beta T cell proliferation | 1 | 421.3× | 0.011 | CD28 |
| activation of protein kinase activity | 1 | 383.0× | 0.011 | STRADB |
| positive regulation of isotype switching to IgG isotypes | 1 | 383.0× | 0.011 | CD28 |
| negative thymic T cell selection | 1 | 351.1× | 0.011 | CD28 |
| negative regulation of potassium ion transmembrane transport | 1 | 351.1× | 0.011 | KCNH2 |
| regulation of membrane repolarization | 1 | 324.1× | 0.011 | KCNH2 |
| membrane repolarization | 1 | 324.1× | 0.011 | KCNH2 |
| T cell receptor signaling pathway | 2 | 75.9× | 0.011 | CTLA4, CD28 |
| potassium ion export across plasma membrane | 1 | 263.3× | 0.012 | KCNH2 |
| ventricular cardiac muscle cell action potential | 1 | 247.8× | 0.012 | KCNH2 |
| positive regulation of potassium ion transmembrane transport | 1 | 247.8× | 0.012 | KCNH2 |
| negative regulation of B cell proliferation | 1 | 234.1× | 0.012 | CTLA4 |
| regulation of ventricular cardiac muscle cell membrane repolarization | 1 | 210.7× | 0.013 | KCNH2 |
| positive regulation of T cell receptor signaling pathway | 1 | 191.5× | 0.013 | CD28 |
| potassium ion homeostasis | 1 | 191.5× | 0.013 | KCNH2 |
| regulation of potassium ion transmembrane transport | 1 | 156.0× | 0.016 | KCNH2 |
| positive regulation of viral genome replication | 1 | 145.3× | 0.016 | CD28 |
| positive regulation of interleukin-4 production | 1 | 140.4× | 0.016 | CD28 |
| positive regulation of mitotic nuclear division | 1 | 135.9× | 0.016 | CD28 |
Therapeutics
Drug target analysis
Approved (phase 4): 1 · Phase ≥3: 1 · Phased (≥1): 1 · Undrugged: 3
Druggability breadth: 4 of 4 evidence-associated genes (100%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| KCNH2 | CETIRIZINE |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| KCNH2 | 706 | 4 |
| CTLA4 | 0 | 0 |
| STRADB | 0 | 0 |
| CD28 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| CETIRIZINE | 4 | KCNH2 |
| BEPRIDIL | 4 | KCNH2 |
| BEXAROTENE | 4 | KCNH2 |
| CLOTRIMAZOLE | 4 | KCNH2 |
| MORICIZINE | 4 | KCNH2 |
| PROPIVERINE | 4 | KCNH2 |
| SUVOREXANT | 4 | KCNH2 |
| ACETOPHENAZINE | 4 | KCNH2 |
| DIBUCAINE | 4 | KCNH2 |
| MESORIDAZINE | 4 | KCNH2 |
| NIRAPARIB | 4 | KCNH2 |
| BUPIVACAINE | 4 | KCNH2 |
| IMIPRAMINE | 4 | KCNH2 |
| BIPERIDEN | 4 | KCNH2 |
| EPINASTINE | 4 | KCNH2 |
| HALOFANTRINE | 4 | KCNH2 |
| DROPERIDOL | 4 | KCNH2 |
| RIMONABANT | 4 | KCNH2 |
| ALOSETRON | 4 | KCNH2 |
| ARIPIPRAZOLE | 4 | KCNH2 |
| AMOXAPINE | 4 | KCNH2 |
| IDARUBICIN | 4 | KCNH2 |
| DICYCLOMINE | 4 | KCNH2 |
| TELITHROMYCIN | 4 | KCNH2 |
| EZETIMIBE | 4 | KCNH2 |
| SAQUINAVIR | 4 | KCNH2 |
| VINCAMINE | 4 | KCNH2 |
| PONATINIB | 4 | KCNH2 |
| DESLORATADINE | 4 | KCNH2 |
| PRUCALOPRIDE | 4 | KCNH2 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 0.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| KCNH2 | 4,851 | Binding:3558, Toxicity:1071, Functional:169, ADMET:53 |
| STRADB | 20 | Binding:20 |
| CTLA4 | 1 | Binding:1 |
| CD28 | 1 | Functional:1 |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| KCNH2 | 4,851 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 4; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| CETIRIZINE | 4 | KCNH2 |
| BEPRIDIL | 4 | KCNH2 |
| BEXAROTENE | 4 | KCNH2 |
| CLOTRIMAZOLE | 4 | KCNH2 |
| MORICIZINE | 4 | KCNH2 |
| PROPIVERINE | 4 | KCNH2 |
| SUVOREXANT | 4 | KCNH2 |
| ACETOPHENAZINE | 4 | KCNH2 |
| DIBUCAINE | 4 | KCNH2 |
| MESORIDAZINE | 4 | KCNH2 |
| NIRAPARIB | 4 | KCNH2 |
| BUPIVACAINE | 4 | KCNH2 |
| IMIPRAMINE | 4 | KCNH2 |
| BIPERIDEN | 4 | KCNH2 |
| EPINASTINE | 4 | KCNH2 |
| HALOFANTRINE | 4 | KCNH2 |
| DROPERIDOL | 4 | KCNH2 |
| RIMONABANT | 4 | KCNH2 |
| ALOSETRON | 4 | KCNH2 |
| ARIPIPRAZOLE | 4 | KCNH2 |
| AMOXAPINE | 4 | KCNH2 |
| IDARUBICIN | 4 | KCNH2 |
| DICYCLOMINE | 4 | KCNH2 |
| TELITHROMYCIN | 4 | KCNH2 |
| EZETIMIBE | 4 | KCNH2 |
| SAQUINAVIR | 4 | KCNH2 |
| VINCAMINE | 4 | KCNH2 |
| PONATINIB | 4 | KCNH2 |
| DESLORATADINE | 4 | KCNH2 |
| PRUCALOPRIDE | 4 | KCNH2 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 1 | KCNH2 |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 2 | CTLA4, CD28 |
| D | Druggable family + AlphaFold only, no drug | 1 | STRADB |
| E | Difficult family or no structure, no drug | 0 |
Undrugged target profiles
3 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| CTLA4 | 1 | — |
| STRADB | 20 | — |
| CD28 | 1 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 3.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 2 |
| PHASE1 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT05235438 | PHASE1 | UNKNOWN | Safety and Toxicity Study of IMM27M in Patients With Advanced Solid Tumor |
| NCT04377867 | Not specified | UNKNOWN | New Biomarkers for Diagnosis and Follow-up of Patients With LRBA or CTLA4 Deficiencies |
| NCT05040256 | Not specified | COMPLETED | Neurologic and Immunologic Characteristics of CTLA-4 and LRBA Hereditary Deficiency |