Autosomal dominant polycystic kidney disease
diseaseOn this page
Also known as ADPKDpolycystic kidney disease, autosomal dominant
Summary
Autosomal dominant polycystic kidney disease (MONDO:0004691) is a disease (an umbrella term covering 7 Mondo subtypes) caused by variants in IFT140, PKD2, and PKD1, with 21 cohort genes and 113 clinical trials. Top therapeutic interventions include tolvaptan, everolimus, and pravastatin.
At a glance
- Prevalence: 1-5 / 10 000 (Europe) [Orphanet-validated]
- Causal genes: IFT140 (GenCC Definitive), PKD2 (GenCC Definitive), PKD1 (GenCC Strong)
- Umbrella term: 7 Mondo subtypes
- Cohort genes: 21
- ClinVar variants: 1,134
- Phenotypes (HPO): 26
- Clinical trials: 113
Clinical features
Epidemiology
Prevalence records
1 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Point prevalence | 1-5 / 10 000 | 39.6 | Europe | Validated |
Signs & symptoms
Clinical features (HPO)
26 HPO clinical features (Orphanet curated; top 26 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0000083 | Renal insufficiency | Very frequent (80-99%) |
| HP:0000107 | Renal cyst | Very frequent (80-99%) |
| HP:0001407 | Hepatic cysts | Very frequent (80-99%) |
| HP:0003259 | Elevated circulating creatinine concentration | Very frequent (80-99%) |
| HP:0012213 | Decreased glomerular filtration rate | Very frequent (80-99%) |
| HP:0000790 | Hematuria | Frequent (30-79%) |
| HP:0000822 | Hypertension | Frequent (30-79%) |
| HP:0003774 | Stage 5 chronic kidney disease | Frequent (30-79%) |
| HP:0012591 | Abnormal urinary electrolyte concentration | Frequent (30-79%) |
| HP:0012592 | Albuminuria | Frequent (30-79%) |
| HP:0012622 | Chronic kidney disease | Frequent (30-79%) |
| HP:0030157 | Flank pain | Frequent (30-79%) |
| HP:0000010 | Recurrent urinary tract infections | Occasional (5-29%) |
| HP:0000105 | Enlarged kidney | Occasional (5-29%) |
| HP:0000791 | Uric acid nephrolithiasis | Occasional (5-29%) |
| HP:0001634 | Mitral valve prolapse | Occasional (5-29%) |
| HP:0001737 | Pancreatic cysts | Occasional (5-29%) |
| HP:0002616 | Aortic root aneurysm | Occasional (5-29%) |
| HP:0004944 | Dilatation of the cerebral artery | Occasional (5-29%) |
| HP:0006557 | Polycystic liver disease | Occasional (5-29%) |
| HP:0008672 | Calcium oxalate nephrolithiasis | Occasional (5-29%) |
| HP:0011004 | Abnormal systemic arterial morphology | Occasional (5-29%) |
| HP:0012207 | Reduced sperm motility | Occasional (5-29%) |
| HP:0012330 | Pyelonephritis | Occasional (5-29%) |
| HP:0100702 | Arachnoid cyst | Occasional (5-29%) |
| HP:0011760 | Pituitary growth hormone cell adenoma | Very rare (<1-4%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | autosomal dominant polycystic kidney disease |
| Mondo ID | MONDO:0004691 |
| EFO | EFO:1001496 |
| MeSH | D016891 |
| Orphanet | 730 |
| DOID | DOID:898 |
| ICD-11 | 91220434 |
| NCIT | C84578 |
| SNOMED CT | 765330003 |
| UMLS | C0085413 |
| MedGen | 88404 |
| NORD | 828 |
| Is cancer (heuristic) | no |
Also known as: ADPKD · autosomal dominant polycystic kidney disease · polycystic kidney disease, autosomal dominant
Data availability: 1,134 ClinVar variants · 10 GenCC gene-disease records · 50 cell lines.
Disease family
An umbrella term covering 7 Mondo subtypes.
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › autosomal genetic disease › autosomal dominant disease › autosomal dominant polycystic kidney disease
Related subtypes (191): autosomal dominant polycystic liver disease, cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1, tuberous sclerosis, Treacher-Collins syndrome, hereditary breast ovarian cancer syndrome, Lynch syndrome, branchio-oto-renal syndrome, autosomal dominant Aarskog syndrome, acroosteolysis dominant type, ADULT syndrome, autosomal dominant Alport syndrome, amelogenesis imperfecta type 1B, Townes-Brocks syndrome, nevoid basal cell carcinoma syndrome, blepharophimosis, ptosis, and epicanthus inversus syndrome, autosomal dominant brachyolmia, branchiooculofacial syndrome, pheochromocytoma/paraganglioma syndrome 4, cataract-aberrant oral frenula-growth delay syndrome, cherubism, autosomal dominant chondrodysplasia punctata, autosomal dominant popliteal pterygium syndrome, blepharocheilodontic syndrome, cochleosaccular degeneration-cataract syndrome, renal coloboma syndrome, Beare-Stevenson cutis gyrata syndrome, autosomal dominant vibratory urticaria, neurohypophyseal diabetes insipidus, autosomal dominant Kenny-Caffey syndrome, Rapp-Hodgkin syndrome, Ehlers-Danlos syndrome, classic type, autosomal dominant Ehlers-Danlos syndrome, vascular type, multiple endocrine neoplasia type 1, Coffin-Siris syndrome 1, isolated congenital adermatoglyphia, Flynn-Aird syndrome, Frasier syndrome, hand-foot-genital syndrome, Holt-Oram syndrome, hyperkeratosis-hyperpigmentation syndrome, autosomal dominant ichthyosis vulgaris, hyper-IgE recurrent infection syndrome 1, autosomal dominant, autosomal dominant keratitis, autosomal dominant keratitis-ichthyosis-hearing loss syndrome, LADD syndrome, trichorhinophalangeal syndrome type II, Noonan syndrome with multiple lentigines, microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability, Marfan syndrome, melanoma, cutaneous malignant, susceptibility to, 2, autosomal dominant primary microcephaly, autosomal dominant progressive external ophthalmoplegia, monilethrix, Muir-Torre syndrome, autosomal dominant myoglobinuria, autosomal dominant centronuclear myopathy, nail-patella syndrome, multiple endocrine neoplasia type 2B, autosomal dominant omodysplasia, pheochromocytoma/paraganglioma syndrome 1, Pelger-Huet anomaly, multiple endocrine neoplasia type 2A, piebaldism, autosomal dominant medullary cystic kidney disease with or without hyperuricemia, generalized juvenile polyposis/juvenile polyposis coli, juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome, Peutz-Jeghers syndrome, contractures, pterygia, and spondylocarpotarsal fusion syndrome 1A, autosomal dominant distal renal tubular acidosis, retinoschisis, autosomal dominant, autosomal dominant Robinow syndrome, scapuloperoneal spinal muscular atrophy, autosomal dominant, autosomal dominant sideroblastic anemia, spondyloepiphyseal dysplasia tarda, autosomal dominant, proximal symphalangism, calcaneonavicular coalition, thanatophoric dysplasia type 1, trichorhinophalangeal syndrome type I, Muckle-Wells syndrome, autosomal dominant hypophosphatemic rickets, von Hippel-Lindau disease, Denys-Drash syndrome, autosomal dominant severe congenital neutropenia, Costello syndrome, EEC syndrome, multiple cutaneous and mucosal venous malformations, diffuse nonepidermolytic palmoplantar keratoderma, Timothy syndrome, pheochromocytoma/paraganglioma syndrome 2, spondyloepimetaphyseal dysplasia with multiple dislocations, Brooke-Spiegler syndrome, macrocephaly-autism syndrome, pheochromocytoma/paraganglioma syndrome 3, Duane-radial ray syndrome, PCWH syndrome, heart-hand syndrome, Slovenian type, congenital stationary night blindness autosomal dominant 3, mandibulofacial dysostosis-microcephaly syndrome, multiple endocrine neoplasia type 4, juvenile cataract-microcornea-renal glucosuria syndrome, Crouzon syndrome-acanthosis nigricans syndrome, Birk-Barel syndrome, thrombophilia due to protein S deficiency, autosomal dominant, dyskeratosis congenita, autosomal dominant 2, dyskeratosis congenita, autosomal dominant 3, colorectal cancer, hereditary nonpolyposis, type 6, colorectal cancer, hereditary nonpolyposis, type 7, brain small vessel disease 2A, autosomal dominant, intellectual disability, autosomal dominant 14, intellectual disability, autosomal dominant 15, intellectual disability, autosomal dominant 16, hypopigmentation-punctate palmoplantar keratoderma syndrome, intellectual disability-facial dysmorphism syndrome due to SETD5 haploinsufficiency, postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome, intellectual developmental disorder with microcephaly and with or without ocular malformations or hypogonadotropic hypogonadism, intellectual disability, autosomal dominant 29, intellectual disability, autosomal dominant 30, Houge-Janssens syndrome 2, severe achondroplasia-developmental delay-acanthosis nigricans syndrome, dyskeratosis congenita, autosomal dominant 6, epidermolysis bullosa simplex 6, generalized, with scarring and hair loss, autosomal dominant complex spastic paraplegia, early-onset autosomal dominant Alzheimer disease, muscular dystrophy, limb-girdle, autosomal dominant, Feingold syndrome, Carney complex, neuronopathy, distal hereditary motor, autosomal dominant, autosomal dominant coarctation of aorta, autosomal dominant spondylocostal dysostosis, autosomal dominant hypohidrotic ectodermal dysplasia, Cowden disease, autosomal dominant distal myopathy, autosomal dominant rhegmatogenous retinal detachment, palmoplantar keratoderma-spastic paralysis syndrome, Alagille syndrome due to a JAG1 point mutation, PTEN hamartoma tumor syndrome, gastric adenocarcinoma and proximal polyposis of the stomach, autosomal dominant proximal renal tubular acidosis, autosomal dominant spastic ataxia, Waardenburg syndrome, hereditary retinoblastoma, autosomal dominant hypocalcemia, Li-Fraumeni syndrome, Loeys-Dietz syndrome, hereditary hemorrhagic telangiectasia, hereditary inclusion body myopathy-joint contractures-ophthalmoplegia syndrome, microcephalic osteodysplastic dysplasia, Saul-Wilson type, autosomal dominant intermediate Charcot-Marie-Tooth disease, autosomal dominant cutis laxa, autosomal dominant nonsyndromic hearing loss, autosomal dominant optic atrophy, autosomal dominant Emery-Dreifuss muscular dystrophy, autosomal dominant cerebellar ataxia, autosomal dominant osteopetrosis, autosomal dominant epidermolytic ichthyosis, ventricular arrhythmias due to cardiac ryanodine receptor calcium release deficiency syndrome, distal arthrogryposis type 2B1, neurofibromatosis, autosomal dominant cataract, arthrogryposis, distal, type 2B2, arthrogryposis, distal, type 2B3, Charcot-Marie-Tooth disease, demyelinating, type 1G, Delpire-McNeill syndrome, LAMA5-related multisystemic syndrome, autosomal dominant oculocutaneous albinism, Charcot-Marie-tooth disease, axonal, type 2DD, Pilarowski-Bjornsson syndrome, intellectual disability, autosomal dominant, fatty acyl-CoA reductase 1 upregulation, GUCY2D-related dominant retinopathy, RPE65-related dominant retinopathy, autosomal dominant titinopathy, NOG-related symphalangism spectrum disorder, ALPL-related autosomal dominant hypophosphatasia, MYH10-related neurodevelopmental disorder with congenital anomalies, spastic paraplegia 30A, autosomal dominant, TMEM127-related tumor predisposition, MAX-related tumor predisposition, BMPR1A-related juvenile polyposis syndrome, RP1-related dominant retinopathy, Birt-Hogg-Dube syndrome, inclusion body myopathy and brain white matter abnormalities, KINSSHIP syndrome, autosomal dominant nebulin-related myopathy, IMPG1-related dominant retinopathy, PROM1-related dominant retinopathy, PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome, ALG8-related autosomal dominant polycystic kidney and/or liver disease, NOTCH1-related AOS spectrum disorder, FLNB-associated autosomal dominant filamin related bone disorder, familial antiphospholipid syndrome
Subtypes (7): polycystic kidney disease 1, polycystic kidney disease 3 with or without polycystic liver disease, polycystic kidney disease 2, polycystic kidney disease 7, polycystic kidney disease 6 with or without polycystic liver disease, ALG9-associated autosomal dominant polycystic kidney disease, polycystic kidney disease 8
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
600 retrieved; paginated sample, class counts are floors:
260 uncertain significance, 144 likely benign, 63 pathogenic, 37 benign, 32 benign/likely benign, 31 conflicting classifications of pathogenicity, 23 likely pathogenic, 10 pathogenic/likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1172653 | NM_016306.6(DNAJB11):c.70C>T (p.Arg24Ter) | DNAJB11 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2053433 | NM_016306.6(DNAJB11):c.100C>T (p.Arg34Ter) | DNAJB11 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2281222 | NM_016306.6(DNAJB11):c.724C>T (p.Arg242Ter) | DNAJB11 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 31680 | NM_014714.4(IFT140):c.2399+1G>T | IFT140 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1996962 | NM_000297.4(PKD2):c.282del (p.Phe94fs) | LOC129992813 | Pathogenic | criteria provided, single submitter |
| 2087027 | NM_000297.4(PKD2):c.208G>T (p.Gly70Ter) | LOC129992813 | Pathogenic | criteria provided, single submitter |
| 1048642 | NM_001009944.3(PKD1):c.3931dup (p.Ala1311fs) | PKD1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1050228 | NM_001009944.3(PKD1):c.8791+40_10050+3del | PKD1 | Pathogenic | no assertion criteria provided |
| 1255639 | NM_001009944.3(PKD1):c.7579_7580del (p.Val2527fs) | PKD1 | Pathogenic | criteria provided, single submitter |
| 1255640 | NM_001009944.3(PKD1):c.6555C>A (p.Tyr2185Ter) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255641 | NM_001009944.3(PKD1):c.2839C>T (p.Gln947Ter) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255643 | NM_001009944.3(PKD1):c.1353dup (p.Val452fs) | PKD1 | Pathogenic | criteria provided, single submitter |
| 1255646 | NM_001009944.3(PKD1):c.5679G>A (p.Trp1893Ter) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255649 | NM_001009944.3(PKD1):c.6391A>C (p.Ser2131Arg) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255651 | NM_001009944.3(PKD1):c.11016+1G>A | PKD1 | Pathogenic | no assertion criteria provided |
| 1255653 | NM_001009944.3(PKD1):c.2681_2690del (p.Leu893_Phe894insTer) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255656 | NM_001009944.3(PKD1):c.12725_12735dup (p.Leu4246fs) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255660 | NM_001009944.3(PKD1):c.5065G>T (p.Glu1689Ter) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255661 | NM_001009944.3(PKD1):c.10462C>T (p.Gln3488Ter) | PKD1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1255663 | NM_001009944.3(PKD1):c.109del (p.Cys37fs) | PKD1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1255665 | NM_001009944.3(PKD1):c.965_984dup (p.Gly329fs) | PKD1 | Pathogenic | criteria provided, single submitter |
| 1255668 | NM_001009944.3(PKD1):c.6210del (p.Cys2071fs) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255671 | NM_001009944.3(PKD1):c.8631del (p.Asn2878fs) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255672 | NM_001009944.3(PKD1):c.302del (p.Asn101fs) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255675 | NM_001009944.3(PKD1):c.5964_5965del (p.Arg1990fs) | PKD1 | Pathogenic | no assertion criteria provided |
| 1255677 | NM_001009944.3(PKD1):c.9398-2A>G | PKD1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1255679 | NM_001009944.3(PKD1):c.7065+2T>G | PKD1 | Pathogenic | no assertion criteria provided |
| 1255680 | NM_001009944.3(PKD1):c.6915+1G>A | PKD1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1255683 | NM_001009944.3(PKD1):c.11270-1G>A | PKD1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1298648 | NM_001009944.3(PKD1):c.2853+1G>A | PKD1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 65 · Orphanet: 34 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| GANAB | Definitive | Autosomal dominant | polycystic kidney disease 3 with or without polycystic liver disease | 5 |
| IFT140 | Definitive | Autosomal dominant | autosomal dominant polycystic kidney disease | 11 |
| PKD1 | Definitive | Autosomal recessive | autosomal recessive polycystic kidney disease | 7 |
| PKD2 | Definitive | Autosomal dominant | autosomal dominant polycystic kidney disease | 6 |
| PRKD1 | Definitive | Autosomal recessive | autosomal recessive polycystic kidney disease | 14 |
| ALG5 | Strong | Autosomal dominant | polycystic kidney disease 7 | 5 |
| ALG9 | Strong | Autosomal dominant | ALG9-associated autosomal dominant polycystic kidney disease | 10 |
| DNAJB11 | Strong | Autosomal dominant | polycystic kidney disease 6 with or without polycystic liver disease | 7 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| DNAJB11 | Orphanet:730 | Autosomal dominant polycystic kidney disease |
| ALG9 | Orphanet:730 | Autosomal dominant polycystic kidney disease |
| ALG9 | Orphanet:79328 | ALG9-CDG |
| IFT140 | Orphanet:140969 | Saldino-Mainzer syndrome |
| IFT140 | Orphanet:474 | Jeune syndrome |
| IFT140 | Orphanet:65 | Leber congenital amaurosis |
| IFT140 | Orphanet:730 | Autosomal dominant polycystic kidney disease |
| IFT140 | Orphanet:791 | Retinitis pigmentosa |
| GANAB | Orphanet:730 | Autosomal dominant polycystic kidney disease |
| PKD1 | Orphanet:730 | Autosomal dominant polycystic kidney disease |
| PKD1 | Orphanet:88924 | Autosomal dominant polycystic kidney disease type 1 with tuberous sclerosis |
| PKD2 | Orphanet:730 | Autosomal dominant polycystic kidney disease |
| PRKD1 | Orphanet:276145 | Malignant epithelial tumor of salivary glands |
| PRKD1 | Orphanet:708019 | Congenital heart defect-ectodermal dysplasia- brachydactyly-telangiectasia syndrome |
| ALG5 | Orphanet:730 | Autosomal dominant polycystic kidney disease |
| TSC2 | Orphanet:210159 | Adult hepatocellular carcinoma |
| TSC2 | Orphanet:269001 | Isolated focal cortical dysplasia type IIa |
| TSC2 | Orphanet:269008 | Isolated focal cortical dysplasia type IIb |
| TSC2 | Orphanet:538 | Lymphangioleiomyomatosis |
| TSC2 | Orphanet:805 | Tuberous sclerosis complex |
| TSC2 | Orphanet:88924 | Autosomal dominant polycystic kidney disease type 1 with tuberous sclerosis |
| LRP5 | Orphanet:178377 | Osteosclerosis-developmental delay-craniosynostosis syndrome |
| LRP5 | Orphanet:2783 | Autosomal dominant osteopetrosis type 1 |
| LRP5 | Orphanet:2788 | Osteoporosis-pseudoglioma syndrome |
| LRP5 | Orphanet:2790 | Endosteal hyperostosis, Worth type |
| LRP5 | Orphanet:2924 | Isolated polycystic liver disease |
| LRP5 | Orphanet:3416 | Hyperostosis corticalis generalisata |
| LRP5 | Orphanet:498481 | LRP5-related primary osteoporosis |
| LRP5 | Orphanet:891 | Familial exudative vitreoretinopathy |
| LRP5 | Orphanet:90050 | Retinopathy of prematurity |
| LRP6 | Orphanet:1810 | Autosomal dominant hypohidrotic ectodermal dysplasia |
| LRP6 | Orphanet:99798 | Oligodontia |
| PKHD1 | Orphanet:53035 | Caroli disease |
| PKHD1 | Orphanet:731 | Autosomal recessive polycystic kidney disease |
Cohort genes → proteins
21 cohort genes, 17 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 21 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| DNAJB11 | HGNC:14889 | ENSG00000090520 | Q9UBS4 | DnaJ homolog subfamily B member 11 | gencc,clinvar |
| ALG9 | HGNC:15672 | ENSG00000086848 | Q9H6U8 | Alpha-1,2-mannosyltransferase ALG9 | gencc,clinvar |
| IFT140 | HGNC:29077 | ENSG00000187535 | Q96RY7 | Intraflagellar transport protein 140 homolog | gencc,clinvar |
| GANAB | HGNC:4138 | ENSG00000089597 | Q14697 | Neutral alpha-glucosidase AB | gencc,clinvar |
| PKD1 | HGNC:9008 | ENSG00000008710 | P98161 | Polycystin-1 | gencc,clinvar |
| PKD2 | HGNC:9009 | ENSG00000118762 | Q13563 | Polycystin-2 | gencc,clinvar |
| PRKD1 | HGNC:9407 | ENSG00000184304 | Q15139 | Serine/threonine-protein kinase D1 | gencc,clinvar |
| ALG5 | HGNC:20266 | ENSG00000120697 | Q9Y673 | Dolichyl-phosphate beta-glucosyltransferase | gencc |
| TSC2 | HGNC:12363 | ENSG00000103197 | P49815 | Tuberin | clinvar |
| HERC5 | HGNC:24368 | ENSG00000138646 | Q9UII4 | E3 ISG15–protein ligase HERC5 | clinvar |
| BRICD5 | HGNC:28309 | ENSG00000182685 | Q6PL45 | BRICHOS domain-containing protein 5 | clinvar |
| DKK3 | HGNC:2893 | ENSG00000050165 | Q9UBP4 | Dickkopf-related protein 3 | clinvar |
| MIR1225 | HGNC:33931 | ENSG00000221656 | microRNA 1225 | clinvar | |
| MIR4516 | HGNC:41617 | ENSG00000265867 | microRNA 4516 | clinvar | |
| MIR6511B1 | HGNC:50228 | ENSG00000284008 | microRNA 6511b-1 | clinvar | |
| PKD1-AS1 | HGNC:56035 | ENSG00000259933 | PKD1 antisense RNA 1 | clinvar | |
| LRP5 | HGNC:6697 | ENSG00000162337 | O75197 | Low-density lipoprotein receptor-related protein 5 | clinvar |
| LRP6 | HGNC:6698 | ENSG00000070018 | O75581 | Low-density lipoprotein receptor-related protein 6 | clinvar |
| ABCG2 | HGNC:74 | ENSG00000118777 | Q9UNQ0 | Broad substrate specificity ATP-binding cassette transporter ABCG2 | clinvar |
| ONECUT2 | HGNC:8139 | ENSG00000119547 | O95948 | One cut domain family member 2 | clinvar |
| PKHD1 | HGNC:9016 | ENSG00000170927 | P08F94 | Fibrocystin | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| DNAJB11 | DnaJ homolog subfamily B member 11 | As a co-chaperone for HSPA5 it is required for proper folding, trafficking or degradation of proteins. |
| ALG9 | Alpha-1,2-mannosyltransferase ALG9 | Mannosyltransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. |
| IFT140 | Intraflagellar transport protein 140 homolog | Component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein-coupled receptors (GPCRs). |
| GANAB | Neutral alpha-glucosidase AB | Catalytic subunit of glucosidase II that cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins. |
| PKD1 | Polycystin-1 | Component of a heteromeric calcium-permeable ion channel formed by PKD1 and PKD2 that is activated by interaction between PKD1 and a Wnt family member, such as WNT3A and WNT9B. |
| PKD2 | Polycystin-2 | Forms a nonselective cation channel. |
| PRKD1 | Serine/threonine-protein kinase D1 | Serine/threonine-protein kinase that converts transient diacylglycerol (DAG) signals into prolonged physiological effects downstream of PKC, and is involved in the regulation of MAPK8/JNK1 and Ras signaling, Golgi membrane integrity and tr… |
| ALG5 | Dolichyl-phosphate beta-glucosyltransferase | Dolichyl-phosphate beta-glucosyltransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. |
| TSC2 | Tuberin | Catalytic component of the TSC-TBC complex, a multiprotein complex that acts as a negative regulator of the canonical mTORC1 complex, an evolutionarily conserved central nutrient sensor that stimulates anabolic reactions and macromolecule… |
| HERC5 | E3 ISG15–protein ligase HERC5 | Major E3 ligase for ISG15 conjugation. |
| DKK3 | Dickkopf-related protein 3 | Antagonizes canonical Wnt signaling by inhibiting LRP5/6 interaction with Wnt and by forming a ternary complex with the transmembrane protein KREMEN that promotes internalization of LRP5/6. |
| LRP5 | Low-density lipoprotein receptor-related protein 5 | Acts as a coreceptor with members of the frizzled family of seven-transmembrane spanning receptors to transduce signal by Wnt proteins. |
| LRP6 | Low-density lipoprotein receptor-related protein 6 | Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalosomes. |
| ABCG2 | Broad substrate specificity ATP-binding cassette transporter ABCG2 | Broad substrate specificity ATP-dependent transporter of the ATP-binding cassette (ABC) family that actively extrudes a wide variety of physiological compounds, dietary toxins and xenobiotics from cells. |
| ONECUT2 | One cut domain family member 2 | Transcriptional activator. |
| PKHD1 | Fibrocystin | Promotes ciliogenesis in renal epithelial cells and therefore participates in the tubules formation and/ or ensures the maintenance of the architecture of the lumen of the kidney. |
Protein-family classification
Druggable: 6 · Difficult: 2 · Unknown: 13 · Druggable fraction: 0.29
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Transporter | 1 | 3.7× | 0.753 |
| Antibody/Immunoglobulin | 2 | 2.8× | 0.753 |
| Kinase | 1 | 1.3× | 0.753 |
| Enzyme (other) | 2 | 1.1× | 0.753 |
| Other/Unknown | 13 | 1.1× | 0.753 |
| Scaffold/PPI | 1 | 0.8× | 0.833 |
| Transcription factor | 1 | 0.4× | 0.934 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| DNAJB11 | Other/Unknown | no | DnaJ_domain, DnaJ_C, HSP40/DnaJ_pept-bd | |
| ALG9 | Enzyme (other) | yes | 2.4.1.259 | GPI_mannosylTrfase |
| IFT140 | Scaffold/PPI | no | WD40_rpt, WD40/YVTN_repeat-like_dom_sf, WD40_repeat_dom_sf | |
| GANAB | Enzyme (other) | yes | 3.2.1.207 | Glyco_hydro_31_TIM, Gal_mutarotase_sf_dom, Glyco_hydro_b |
| PKD1 | Antibody/Immunoglobulin | yes | GPS, LRRNT, PC1 | |
| PKD2 | Other/Unknown | no | EF_hand_dom, PKD_2, EF-hand-dom_pair | |
| PRKD1 | Kinase | yes | 2.7.11.13 | Prot_kinase_dom, PH_domain, PKC_DAG/PE |
| ALG5 | Other/Unknown | no | Glyco_trans_2-like, Nucleotide-diphossugar_trans, DPG_synthase | |
| TSC2 | Other/Unknown | no | Rap/Ran_GAP_dom, Tuberin, ARM-like | |
| HERC5 | Other/Unknown | no | Reg_chr_condens, HECT_dom, RCC1/BLIP-II | |
| BRICD5 | Other/Unknown | no | BRICHOS_dom, Gastrokine | |
| DKK3 | Other/Unknown | no | Dickkopf_N, DKK1-4, Dkk3_Cys2 | |
| MIR1225 | Other/Unknown | no | ||
| MIR4516 | Other/Unknown | no | ||
| MIR6511B1 | Other/Unknown | no | ||
| PKD1-AS1 | Other/Unknown | no | ||
| LRP5 | Other/Unknown | no | LDLR_classB_rpt, EGF, LDrepeatLR_classA_rpt | |
| LRP6 | Other/Unknown | no | LDLR_classB_rpt, EGF, LDrepeatLR_classA_rpt | |
| ABCG2 | Transporter | yes | 7.6.2.2 | ABC_transporter-like_ATP-bd, AAA+_ATPase, ABC2_TM |
| ONECUT2 | Transcription factor | no | HD, CUT_dom, Homeodomain-like_sf | |
| PKHD1 | Antibody/Immunoglobulin | yes | IPT_dom, PbH1, Pectin_lyase_fold/virulence |
Expression context
Cohort genes with no expression data: 0.
17 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 21 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| right hemisphere of cerebellum | 5 |
| cerebellar cortex | 4 |
| cerebellar hemisphere | 4 |
| body of pancreas | 3 |
| endothelial cell | 3 |
| ventricular zone | 3 |
| calcaneal tendon | 3 |
| sural nerve | 3 |
| jejunal mucosa | 2 |
| bone marrow cell | 1 |
| vermiform appendix | 1 |
| ganglionic eminence | 1 |
| left lobe of thyroid gland | 1 |
| right lobe of thyroid gland | 1 |
| right uterine tube | 1 |
| islet of Langerhans | 1 |
| stromal cell of endometrium | 1 |
| blood vessel layer | 1 |
| saphenous vein | 1 |
| seminal vesicle | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| DNAJB11 | 141 | ubiquitous | marker | vermiform appendix, body of pancreas, bone marrow cell |
| ALG9 | 240 | ubiquitous | marker | endothelial cell, body of pancreas, ganglionic eminence |
| IFT140 | 214 | ubiquitous | marker | right uterine tube, right lobe of thyroid gland, left lobe of thyroid gland |
| GANAB | 293 | ubiquitous | marker | stromal cell of endometrium, islet of Langerhans, ventricular zone |
| PKD1 | 290 | marker | right hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex | |
| PKD2 | 288 | ubiquitous | marker | blood vessel layer, calcaneal tendon, saphenous vein |
| PRKD1 | 239 | ubiquitous | marker | ventricular zone, seminal vesicle, thoracic aorta |
| ALG5 | 285 | ubiquitous | marker | parotid gland, body of pancreas, corpus epididymis |
| TSC2 | 282 | ubiquitous | marker | right hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex |
| HERC5 | 244 | ubiquitous | marker | primordial germ cell in gonad, male germ line stem cell (sensu Vertebrata) in testis, right testis |
| BRICD5 | 164 | yes | right hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex | |
| DKK3 | 286 | ubiquitous | marker | endothelial cell, Brodmann (1909) area 23, middle temporal gyrus |
| MIR1225 | 77 | yes | sural nerve, skeletal muscle tissue, Brodmann (1909) area 9 | |
| MIR4516 | 116 | yes | sural nerve, prefrontal cortex, right hemisphere of cerebellum | |
| MIR6511B1 | 46 | yes | sural nerve, calcaneal tendon, Ammon’s horn | |
| PKD1-AS1 | 133 | marker | right hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex | |
| LRP5 | 224 | ubiquitous | marker | right lobe of liver, mucosa of transverse colon, ascending aorta |
| LRP6 | 139 | ubiquitous | marker | calcaneal tendon, corpus callosum, ventricular zone |
| ABCG2 | 245 | broad | marker | jejunal mucosa, ileal mucosa, endothelial cell |
| ONECUT2 | 80 | broad | marker | jejunal mucosa, pancreatic ductal cell, duodenum |
| PKHD1 | 51 | tissue_specific | marker | kidney epithelium, renal medulla, metanephros cortex |
Protein interactions among cohort
Intra-cohort edges: 15.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| TSC2 | 4,135 |
| GANAB | 3,817 |
| ABCG2 | 3,743 |
| DNAJB11 | 3,387 |
| ALG5 | 2,785 |
| LRP5 | 2,619 |
| LRP6 | 2,525 |
| DKK3 | 2,444 |
| PRKD1 | 2,131 |
| PKD2 | 1,644 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ALG5 | PKD2 | biogrid_interaction |
| ALG9 | DNAJB11 | string_interaction |
| ALG9 | GANAB | string_interaction |
| DKK3 | LRP5 | string_interaction |
| DKK3 | LRP6 | string_interaction |
| DNAJB11 | GANAB | string_interaction |
| GANAB | PKD1 | string_interaction |
| LRP5 | LRP6 | string_interaction |
| PKD1 | PKD2 | biogrid_interaction, intact, string_interaction |
| PKD1 | PKHD1 | string_interaction |
| PKD1 | PRKD1 | string_interaction |
| PKD1 | TSC2 | string_interaction |
| PKD2 | PKHD1 | string_interaction |
| PKD2 | PRKD1 | string_interaction |
| PKHD1 | PRKD1 | string_interaction |
Structural data
PDB: 10 · AlphaFold-only: 7 · No structure: 4
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| PKD2 | Q13563 | 31 |
| LRP6 | O75581 | 30 |
| ABCG2 | Q9UNQ0 | 29 |
| PKD1 | P98161 | 13 |
| IFT140 | Q96RY7 | 4 |
| ALG9 | Q9H6U8 | 2 |
| GANAB | Q14697 | 2 |
| TSC2 | P49815 | 2 |
| ONECUT2 | O95948 | 2 |
| HERC5 | Q9UII4 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| ALG5 | Q9Y673 | 92.29 |
| DNAJB11 | Q9UBS4 | 84.34 |
| LRP5 | O75197 | 78.65 |
| DKK3 | Q9UBP4 | 74.08 |
| BRICD5 | Q6PL45 | 70.89 |
| PRKD1 | Q15139 | 68.99 |
| PKHD1 | P08F94 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 68. Enrichment computed across 21 evidence-associated genes (13 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 13 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Signaling by RNF43 mutants | 2 | 195.2× | 0.003 | LRP5, LRP6 |
| Negative regulation of TCF-dependent signaling by WNT ligand antagonists | 2 | 109.8× | 0.004 | LRP5, LRP6 |
| Signaling by WNT in cancer | 2 | 92.5× | 0.004 | LRP5, LRP6 |
| Regulation of FZD by ubiquitination | 2 | 79.9× | 0.004 | LRP5, LRP6 |
| VxPx cargo-targeting to cilium | 2 | 79.9× | 0.004 | PKD1, PKD2 |
| Disassembly of the destruction complex and recruitment of AXIN to the membrane | 2 | 54.9× | 0.007 | LRP5, LRP6 |
| Sphingolipid de novo biosynthesis | 2 | 43.9× | 0.009 | PRKD1, ABCG2 |
| Defective ALG9 causes CDG-1l | 1 | 878.5× | 0.010 | ALG9 |
| Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein | 2 | 31.9× | 0.013 | ALG9, ALG5 |
| Synthesis of dolichyl-phosphate-glucose | 1 | 439.2× | 0.015 | ALG5 |
| Sphingolipid metabolism | 2 | 25.8× | 0.016 | PRKD1, ABCG2 |
| Inhibition of TSC complex formation by AKT (PKB) | 1 | 175.7× | 0.025 | TSC2 |
| Abacavir transmembrane transport | 1 | 175.7× | 0.025 | ABCG2 |
| Ciprofloxacin ADME | 1 | 175.7× | 0.025 | ABCG2 |
| TCF dependent signaling in response to WNT | 2 | 18.1× | 0.025 | LRP5, LRP6 |
| Signaling by WNT | 2 | 17.2× | 0.025 | LRP5, LRP6 |
| Maturation of spike protein | 1 | 146.4× | 0.027 | GANAB |
| Signaling by LRP5 mutants | 1 | 125.5× | 0.029 | LRP5 |
| Metabolism of porphyrins | 1 | 109.8× | 0.029 | ABCG2 |
| Abacavir ADME | 1 | 109.8× | 0.029 | ABCG2 |
| NFE2L2 regulating MDR associated enzymes | 1 | 109.8× | 0.029 | ABCG2 |
| Heme degradation | 1 | 62.8× | 0.047 | ABCG2 |
| AKT phosphorylates targets in the cytosol | 1 | 62.8× | 0.047 | TSC2 |
| Heme biosynthesis | 1 | 58.6× | 0.048 | ABCG2 |
| Calnexin/calreticulin cycle | 1 | 54.9× | 0.049 | GANAB |
| Asparagine N-linked glycosylation | 2 | 9.2× | 0.050 | ALG9, ALG5 |
| Diseases associated with N-glycosylation of proteins | 1 | 48.8× | 0.050 | ALG9 |
| Modulation of host responses by IFN-stimulated genes | 1 | 46.2× | 0.050 | HERC5 |
| Diseases of signal transduction by growth factor receptors and second messengers | 2 | 8.7× | 0.050 | LRP5, LRP6 |
| N-glycan trimming in the ER and Calnexin/Calreticulin cycle | 1 | 32.5× | 0.064 | GANAB |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 17 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| mesonephric tubule development | 2 | 991.3× | 3e-04 | PKD1, PKD2 |
| metanephric ascending thin limb development | 2 | 495.6× | 8e-04 | PKD1, PKD2 |
| mesonephric duct development | 2 | 396.5× | 9e-04 | PKD1, PKD2 |
| Wnt signaling pathway | 4 | 23.5× | 0.001 | PKD1, PKD2, DKK3, LRP6 |
| determination of left/right symmetry | 3 | 45.1× | 0.002 | IFT140, PKD2, ALG5 |
| placenta blood vessel development | 2 | 165.2× | 0.002 | PKD1, PKD2 |
| liver development | 3 | 39.1× | 0.002 | PKD1, PKD2, ONECUT2 |
| heart development | 4 | 18.5× | 0.002 | IFT140, PKD1, PKD2, TSC2 |
| regulation of cell-matrix adhesion | 2 | 152.5× | 0.002 | ONECUT2, PKHD1 |
| detection of mechanical stimulus | 2 | 141.6× | 0.002 | PKD1, PKD2 |
| transepithelial transport | 2 | 141.6× | 0.002 | PRKD1, ABCG2 |
| protein heterotetramerization | 2 | 123.9× | 0.003 | PKD1, PKD2 |
| dolichol-linked oligosaccharide biosynthetic process | 2 | 99.1× | 0.004 | ALG9, ALG5 |
| embryonic placenta development | 2 | 90.1× | 0.004 | PKD1, PKD2 |
| branching morphogenesis of an epithelial tube | 2 | 86.2× | 0.004 | PKD1, PKHD1 |
| neural tube development | 2 | 62.0× | 0.008 | PKD1, PKD2 |
| spinal cord development | 2 | 60.1× | 0.008 | PKD1, PKD2 |
| cell-cell adhesion | 3 | 17.9× | 0.008 | LRP5, LRP6, PKHD1 |
| positive regulation of transcription by RNA polymerase II | 6 | 5.2× | 0.008 | PKD1, PKD2, PRKD1, LRP5, LRP6, ONECUT2 |
| endocytosis | 3 | 16.8× | 0.009 | TSC2, LRP5, LRP6 |
| metanephric cortex development | 1 | 991.3× | 0.009 | PKD2 |
| metanephric cortical collecting duct development | 1 | 991.3× | 0.009 | PKD2 |
| metanephric distal tubule development | 1 | 991.3× | 0.009 | PKD2 |
| metanephric distal tubule morphogenesis | 1 | 991.3× | 0.009 | PKD1 |
| negative regulation of anti-Mullerian hormone signaling pathway | 1 | 991.3× | 0.009 | DKK3 |
| regulation of cholangiocyte proliferation | 1 | 991.3× | 0.009 | PKHD1 |
| mesenchymal stem cell migration | 1 | 991.3× | 0.009 | ONECUT2 |
| response to peptide hormone | 2 | 46.1× | 0.009 | LRP5, LRP6 |
| sphingolipid biosynthetic process | 2 | 42.2× | 0.009 | PRKD1, ABCG2 |
| regulation of cell adhesion | 2 | 36.0× | 0.012 | PKD1, PKHD1 |
Therapeutics
Drugs indicated for this disease
1 approved, 13 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Tolvaptan | Approved (phase 4) |
| Bardoxolone Methyl | Phase 3 (in late-stage trials) |
| Everolimus | Phase 3 (in late-stage trials) |
| Hydrochlorothiazide | Phase 3 (in late-stage trials) |
| Lanreotide | Phase 3 (in late-stage trials) |
| Lixivaptan | Phase 3 (in late-stage trials) |
| Metformin | Phase 3 (in late-stage trials) |
| Octreotide | Phase 3 (in late-stage trials) |
| Pravastatin | Phase 3 (in late-stage trials) |
| Sirolimus | Phase 3 (in late-stage trials) |
| Sodium Chloride | Phase 3 (in late-stage trials) |
| Somatostatin | Phase 3 (in late-stage trials) |
| Spironolactone | Phase 3 (in late-stage trials) |
| Triptolide | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Bosutinib, Cilnidipine, Empagliflozin, Imidapril, Sodium Citrate, Tamibarotene, Tesevatinib, Venglustat.
Drug target analysis
Approved (phase 4): 2 · Phase ≥3: 2 · Phased (≥1): 3 · Undrugged: 18
Druggability breadth: 9 of 21 evidence-associated genes (43%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| PRKD1 | INGENOL MEBUTATE |
| ABCG2 | CANDESARTAN CILEXETIL |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| ABCG2 | 92 | 4 |
| PRKD1 | 26 | 4 |
| GANAB | 1 | 2 |
| DNAJB11 | 0 | 0 |
| ALG9 | 0 | 0 |
| IFT140 | 0 | 0 |
| PKD1 | 0 | 0 |
| PKD2 | 0 | 0 |
| ALG5 | 0 | 0 |
| TSC2 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| INGENOL MEBUTATE | 4 | PRKD1 |
| MIDOSTAURIN | 4 | ABCG2, PRKD1 |
| TAMOXIFEN | 4 | PRKD1 |
| NERATINIB | 4 | PRKD1 |
| BRIGATINIB | 4 | PRKD1 |
| NINTEDANIB | 4 | PRKD1 |
| SUNITINIB | 4 | ABCG2, PRKD1 |
| CRIZOTINIB | 4 | PRKD1 |
| GEFITINIB | 4 | ABCG2, PRKD1 |
| CANDESARTAN CILEXETIL | 4 | ABCG2 |
| TELMISARTAN | 4 | ABCG2 |
| SAQUINAVIR | 4 | ABCG2 |
| ATAZANAVIR | 4 | ABCG2 |
| FEBUXOSTAT | 4 | ABCG2 |
| PONATINIB | 4 | ABCG2 |
| RABEPRAZOLE | 4 | ABCG2 |
| DOLUTEGRAVIR | 4 | ABCG2 |
| TIVOZANIB | 4 | ABCG2 |
| CLOFAZIMINE | 4 | ABCG2 |
| SORAFENIB | 4 | ABCG2 |
| POSACONAZOLE | 4 | ABCG2 |
| ESTRONE | 4 | ABCG2 |
| NIMODIPINE | 4 | ABCG2 |
| ATOVAQUONE | 4 | ABCG2 |
| NICARDIPINE | 4 | ABCG2 |
| ATORVASTATIN | 4 | ABCG2 |
| PANTOPRAZOLE | 4 | ABCG2 |
| OMEPRAZOLE | 4 | ABCG2 |
| KETOCONAZOLE | 4 | ABCG2 |
| CYCLOSPORINE | 4 | ABCG2 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 4.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| ABCG2 | 878 | Binding:651, ADMET:115, Functional:111, Toxicity:1 |
| PRKD1 | 660 | Binding:650, Functional:10 |
| GANAB | 38 | Binding:32, Functional:6 |
| PKD1 | 27 | Binding:27 |
| PKD2 | 12 | Binding:12 |
| LRP6 | 9 | Binding:9 |
| DNAJB11 | 1 | Binding:1 |
| TSC2 | 1 | Binding:1 |
| LRP5 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| ALG9 | 2.4.1.259, 2.4.1.261 | dolichyl-P-Man:Man6GlcNAc2-PP-dolichol alpha-1,2-mannosyltransferase, dolichyl-P-Man:Man8GlcNAc2-PP-dolichol alpha-1,2-mannosyltransferase |
| GANAB | 3.2.1.207 | mannosyl-oligosaccharide alpha-1,3-glucosidase |
| PRKD1 | 2.7.11.13 | protein kinase C |
| ABCG2 | 7.6.2.2, 7.6.2.3 | ABC-type xenobiotic transporter, ABC-type glutathione-S-conjugate transporter |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| PRKD1 | 660 |
| ABCG2 | 878 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 18; with CPIC/DPWG dosing guidelines: 1.
Cohort genes with a CPIC/DPWG dosing guideline
| Symbol | CPIC guidelines |
|---|---|
| ABCG2 | 1 |
Chemical tractability of cohort targets
29 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| INGENOL MEBUTATE | 4 | PRKD1 |
| MIDOSTAURIN | 4 | ABCG2, PRKD1 |
| TAMOXIFEN | 4 | PRKD1 |
| NERATINIB | 4 | PRKD1 |
| BRIGATINIB | 4 | PRKD1 |
| NINTEDANIB | 4 | PRKD1 |
| SUNITINIB | 4 | ABCG2, PRKD1 |
| CRIZOTINIB | 4 | PRKD1 |
| GEFITINIB | 4 | ABCG2, PRKD1 |
| CANDESARTAN CILEXETIL | 4 | ABCG2 |
| TELMISARTAN | 4 | ABCG2 |
| SAQUINAVIR | 4 | ABCG2 |
| ATAZANAVIR | 4 | ABCG2 |
| PONATINIB | 4 | ABCG2 |
| RABEPRAZOLE | 4 | ABCG2 |
| DOLUTEGRAVIR | 4 | ABCG2 |
| TIVOZANIB | 4 | ABCG2 |
| CLOFAZIMINE | 4 | ABCG2 |
| SORAFENIB | 4 | ABCG2 |
| POSACONAZOLE | 4 | ABCG2 |
| ESTRONE | 4 | ABCG2 |
| NIMODIPINE | 4 | ABCG2 |
| ATOVAQUONE | 4 | ABCG2 |
| NICARDIPINE | 4 | ABCG2 |
| ATORVASTATIN | 4 | ABCG2 |
| PANTOPRAZOLE | 4 | ABCG2 |
| OMEPRAZOLE | 4 | ABCG2 |
| KETOCONAZOLE | 4 | ABCG2 |
| CYCLOSPORINE | 4 | ABCG2 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 2 | PRKD1, ABCG2 |
| B | Phased (≥1) drug, not yet approved | 1 | GANAB |
| C | Druggable family + PDB, no drug | 2 | ALG9, PKD1 |
| D | Druggable family + AlphaFold only, no drug | 1 | PKHD1 |
| E | Difficult family or no structure, no drug | 15 | DNAJB11, IFT140, PKD2, ALG5, TSC2, HERC5, BRICD5, DKK3, MIR1225, MIR4516 (+5 more) |
Undrugged target profiles
18 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| ALG9 | 0 | GANAB |
| PKD1 | 27 | PRKD1 |
| DNAJB11 | 1 | — |
| IFT140 | 0 | — |
| PKD2 | 12 | — |
| ALG5 | 0 | — |
| TSC2 | 1 | — |
| HERC5 | 0 | — |
| BRICD5 | 0 | — |
| DKK3 | 0 | — |
| MIR1225 | 0 | — |
| MIR4516 | 0 | — |
| MIR6511B1 | 0 | — |
| PKD1-AS1 | 0 | — |
| LRP5 | 1 | — |
| LRP6 | 9 | — |
| ONECUT2 | 0 | — |
| PKHD1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 113.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 52 |
| PHASE2 | 22 |
| PHASE3 | 18 |
| PHASE1 | 13 |
| PHASE2/PHASE3 | 5 |
| PHASE4 | 3 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03273413 | PHASE4 | ACTIVE_NOT_RECRUITING | Statin Therapy in Patients With Early Stage ADPKD |
| NCT00414440 | PHASE4 | COMPLETED | Efficacy, Safety and Tolerability of Everolimus in Preventing End-stage Renal Disease in Patients With Autosomal Dominant Polycystic Kidney Disease |
| NCT03949894 | PHASE4 | COMPLETED | Evaluating the Safety and effectivenesS in Adult KorEaN Patients Treated With Tolvaptan for Management of Autosomal domInAnt poLycystic Kidney Disease |
| NCT04939935 | PHASE3 | RECRUITING | Implementation of Metformin theraPy to Ease Decline of Kidney Function in Polycystic Kidney Disease (IMPEDE-PKD) |
| NCT05373264 | PHASE3 | RECRUITING | HYDROchlorothiazide to PROTECT Polycystic Kidney Disease Patients and Improve Their Quality of Life |
| NCT00309283 | PHASE3 | COMPLETED | Somatostatin in Polycystic Kidney: a Long-term Three Year Follow up Study |
| NCT00346918 | PHASE3 | COMPLETED | Sirolimus (Rapamune®) for Autosomal Dominant Polycystic Kidney Disease (ADPKD) |
| NCT00428948 | PHASE3 | COMPLETED | Tolvaptan Phase 3 Efficacy and Safety Study in Autosomal Dominant Polycystic Kidney Disease (ADPKD) |
| NCT00920309 | PHASE2/PHASE3 | TERMINATED | Rapamycin as Treatment for Autosomal Dominant Polycystic Kidney Disease (ADPKD): The Role of Biomarkers in Predicting a Response to Therapy |
| NCT01022424 | PHASE3 | COMPLETED | A Long-term Administration Study of OPC-41061 in Patients With Autosomal Dominant Polycystic Kidney Disease (ADPKD) (2) [Extension of Study 156-05-002] |
| NCT01214421 | PHASE3 | COMPLETED | Tolvaptan Extension Study in Participants With ADPKD |
| NCT01223755 | PHASE2/PHASE3 | TERMINATED | Sirolimus In Autosomal Dominant Polycystic Kidney Disease And Severe Renal Insufficiency |
| NCT01377246 | PHASE3 | COMPLETED | Somatostatin In Patients With Autosomal Dominant Polycystic Kidney Disease And Moderate To Severe Renal Insufficiency |
| NCT01616927 | PHASE3 | UNKNOWN | Study of Lanreotide to Treat Polycystic Kidney Disease |
| NCT01853553 | PHASE3 | COMPLETED | Mineralocorticoid Antagonism and Endothelial Dysfunction in Autosomal Dominant Polycystic Kidney Disease (ADPKD) |
| NCT02115659 | PHASE3 | UNKNOWN | Triptolide-Containing Formulation as Treatment for Autosomal Dominant Polycystic Kidney Disease (ADPKD) |
| NCT02119013 | PHASE2/PHASE3 | COMPLETED | Effects of Somatostatin on ADPKD Heart |
| NCT02119052 | PHASE2/PHASE3 | COMPLETED | Effects of Somatostatin on Liver in ADPKD |
| NCT02134899 | PHASE3 | COMPLETED | The Efficacy of Everolimus in Reducing Total Native Kidney Volume in Polycystic Kidney Disease Transplanted Recipients |
| NCT02160145 | PHASE3 | COMPLETED | Efficacy and Safety of Tolvaptan in Subjects With Chronic Kidney Disease Between Late Stage 2 to Early Stage 4 Due to Autosomal Dominant Polycystic Kidney Disease |
| NCT02225860 | PHASE2/PHASE3 | COMPLETED | Diet as a Potential Treatment for Autosomal Dominant Polycystic Kidney Disease |
| NCT02964273 | PHASE3 | COMPLETED | Safety, Pharmacokinetics, Tolerability and Efficacy of Tolvaptan in Children and Adolescents With ADPKD (Autosomal Dominant Polycystic Kidney Disease) |
| NCT03764605 | PHASE3 | UNKNOWN | Metformin vs Tolvaptan for Treatment of Autosomal Dominant Polycystic Kidney Disease |
| NCT03918447 | PHASE3 | TERMINATED | A Trial of Bardoxolone Methyl in Patients With ADPKD - FALCON |
| NCT04064346 | PHASE3 | TERMINATED | Efficacy and Safety of Lixivaptan in the Treatment of Autosomal Dominant Polycystic Kidney Disease |
| NCT04152837 | PHASE3 | TERMINATED | Safety of Lixivaptan in Subjects Previously Treated With Tolvaptan for Autosomal Dominant Polycystic Kidney Disease |
| NCT05870007 | PHASE2 | ENROLLING_BY_INVITATION | Atorvastatin and Alkali Therapy in Patients With Autosomal Dominant Polycystic Kidney Disease |
| NCT06289998 | PHASE2 | ACTIVE_NOT_RECRUITING | Study of Tamibarotene in Patients With ADPKD |
| NCT06435858 | PHASE2 | RECRUITING | Short-term Effects of an SGLT2 Inhibitor on Divalent Ions in Autosomal Dominant Polycystic Kidney Disease |
| NCT06800651 | PHASE2 | RECRUITING | Trial of JMKX003142 in Participants With Rapidly Progressive Autosomal Dominant Polycystic Kidney Disease (ADPKD) |
| NCT06902558 | PHASE2 | RECRUITING | ANCHOR Study: A Study to Assess the Safety and Efficacy of ABBV-CLS-628 in Adult Participants With Autosomal Dominant Polycystic Kidney Disease (ADPKD) |
| NCT07161037 | PHASE2 | RECRUITING | Phase 2a Study of VX-407 in Participants With ADPKD Who Have a Subset of PKD1 Gene Variants (AGLOW) |
| NCT07282821 | PHASE2 | NOT_YET_RECRUITING | Bempedoic Acid Therapy for Polycystic Kidney Disease |
| NCT00841568 | PHASE2 | COMPLETED | A Long-term Administration Study of OPC-41061 in Patients With Autosomal Dominant Polycystic Kidney Disease (ADPKD) [Extension of Study 156-04-001] |
| NCT01210560 | PHASE2 | COMPLETED | Dose-finding Study of New Tolvaptan Formulation in Subjects With ADPKD |
| NCT01336972 | PHASE2 | COMPLETED | Short-term Renal Hemodynamic Effects of Tolvaptan in Subjects With Autosomal Dominant Polycystic Kidney Disease (ADPKD) |
| NCT01451827 | PHASE2 | COMPLETED | 8-Week Study of Tolvaptan Dose Forms in Autosomal Dominant Polycystic Kidney Disease (ADPKD) |
| NCT01670110 | PHASE2 | COMPLETED | Pasireotide LAR in Severe Polycystic Liver Disease |
| NCT01932450 | PHASE2 | UNKNOWN | Radiofrequency Ablation for ADPKD Blood Pressure and Disease Progression Control |
| NCT02527863 | PHASE2 | COMPLETED | Effect of the Aquaretic Tolvaptan on Nitric Oxide System |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| TOLVAPTAN | 4 | 12 |
| EVEROLIMUS | 4 | 2 |
| PRAVASTATIN | 4 | 2 |
| AMIODARONE HYDROCHLORIDE | 4 | 1 |
| FEBUXOSTAT | 4 | 1 |
| LANREOTIDE | 4 | 1 |
| SIROLIMUS | 4 | 1 |
| SODIUM CITRATE | 4 | 1 |
| SPIRONOLACTONE | 4 | 1 |
| TAMIBAROTENE | 4 | 1 |
| LIXIVAPTAN | 3 | 3 |
| TESEVATINIB | 3 | 2 |
| SOMATOSTATIN | 3 | 1 |
| TILARGININE | 3 | 1 |
| GLPG-2737 | 2 | 1 |
| RGLS-4326 | 1 | 1 |
| CHEMBL4303142 | 0 | 9 |
| METFORMIN XR | 0 | 2 |
| CHEMBL4079877 | 0 | 1 |
| CHEMBL4525833 | 0 | 1 |
| CHEMBL1562223 | 0 | 1 |
| CHEMBL30458 | 0 | 1 |
| SCEPTRIN | 0 | 1 |
Related Atlas pages
- Cohort genes: DNAJB11, ALG9, IFT140, GANAB, PKD1, PKD2, PRKD1, ALG5, TSC2, HERC5, BRICD5, DKK3, MIR1225, MIR4516, MIR6511B1, PKD1-AS1, LRP5, LRP6, ABCG2, ONECUT2, PKHD1
- Drugs: Tolvaptan, Everolimus, Pravastatin, Amiodarone, Febuxostat, Lanreotide, Sirolimus, Sodium, Spironolactone, Tamibarotene, Lixivaptan, Tesevatinib, Somatostatin, Tilarginine
- Associated genes: ALG8, NEK8, NEK9