Autosomal recessive nonsyndromic hearing loss 4
diseaseOn this page
Also known as autosomal recessive deafness 4 with enlarged vestibular aqueductautosomal recessive nonsyndromic deafness 4autosomal recessive nonsyndromic deafness type 4deafness, autosomal recessive 4, with enlarged vestibular aqueductDFNB4enlarged vestibular aqueductenlarged vestibular aqueduct, digenicneurosensory nonsyndromic recessive deafness 4
Summary
Autosomal recessive nonsyndromic hearing loss 4 (MONDO:0010933) is a disease caused by SLC26A4 (GenCC Definitive), with 5 cohort genes and 2 clinical trials.
At a glance
- Causal gene: SLC26A4 (GenCC Definitive)
- Cohort genes: 5
- ClinVar variants: 857
- Clinical trials: 2
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | autosomal recessive nonsyndromic hearing loss 4 |
| Mondo ID | MONDO:0010933 |
| MeSH | C566366 |
| OMIM | 600791 |
| DOID | DOID:0110498 |
| UMLS | C3538946 |
| MedGen | 761234 |
| GARD | 0022584 |
| Is cancer (heuristic) | no |
Also known as: autosomal recessive deafness 4 with enlarged vestibular aqueduct · autosomal recessive nonsyndromic deafness 4 · autosomal recessive nonsyndromic deafness type 4 · deafness, autosomal recessive 4, with enlarged vestibular aqueduct · DFNB4 · enlarged vestibular aqueduct · enlarged vestibular aqueduct, digenic · neurosensory nonsyndromic recessive deafness 4
Data availability: 857 ClinVar variants · 5 GenCC gene-disease records · 1 cell line.
Disease family
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › autosomal genetic disease › autosomal recessive disease › hearing loss, autosomal recessive › autosomal recessive nonsyndromic hearing loss 4
Related subtypes (101): autosomal recessive nonsyndromic hearing loss 5, autosomal recessive nonsyndromic hearing loss 1A, autosomal recessive nonsyndromic hearing loss 2, autosomal recessive nonsyndromic hearing loss 3, autosomal recessive nonsyndromic hearing loss 6, autosomal recessive nonsyndromic hearing loss 7, autosomal recessive nonsyndromic hearing loss 9, autosomal recessive nonsyndromic hearing loss 8, autosomal recessive nonsyndromic hearing loss 12, autosomal recessive nonsyndromic hearing loss 15, autosomal recessive nonsyndromic hearing loss 18A, autosomal recessive nonsyndromic hearing loss 17, autosomal recessive nonsyndromic hearing loss 13, autosomal recessive nonsyndromic hearing loss 21, autosomal recessive nonsyndromic hearing loss 14, autosomal recessive nonsyndromic hearing loss 16, autosomal recessive nonsyndromic hearing loss 20, autosomal recessive nonsyndromic hearing loss 26, autosomal recessive nonsyndromic hearing loss 27, autosomal recessive nonsyndromic hearing loss 22, autosomal recessive nonsyndromic hearing loss 31, autosomal recessive nonsyndromic hearing loss 30, autosomal recessive nonsyndromic hearing loss 33, autosomal recessive nonsyndromic hearing loss 37, autosomal recessive nonsyndromic hearing loss 38, autosomal recessive nonsyndromic hearing loss 40, autosomal recessive nonsyndromic hearing loss 39, autosomal recessive nonsyndromic hearing loss 35, autosomal recessive nonsyndromic hearing loss 32, autosomal recessive nonsyndromic hearing loss 36, autosomal recessive nonsyndromic hearing loss 48, autosomal recessive nonsyndromic hearing loss 23, autosomal recessive nonsyndromic hearing loss 42, autosomal recessive nonsyndromic hearing loss 46, autosomal recessive nonsyndromic hearing loss 53, autosomal recessive nonsyndromic hearing loss 28, autosomal recessive nonsyndromic hearing loss 51, autosomal recessive nonsyndromic hearing loss 47, autosomal recessive nonsyndromic hearing loss 55, autosomal recessive nonsyndromic hearing loss 62, autosomal recessive nonsyndromic hearing loss 49, autosomal recessive nonsyndromic hearing loss 44, autosomal recessive nonsyndromic hearing loss 66, autosomal recessive nonsyndromic hearing loss 59, autosomal recessive nonsyndromic hearing loss 65, autosomal recessive nonsyndromic hearing loss 67, autosomal recessive nonsyndromic hearing loss 68, autosomal recessive nonsyndromic hearing loss 24, autosomal recessive nonsyndromic hearing loss 63, autosomal recessive nonsyndromic hearing loss 45, autosomal recessive nonsyndromic hearing loss 1B, autosomal recessive nonsyndromic hearing loss 71, autosomal recessive nonsyndromic hearing loss 77, autosomal recessive nonsyndromic hearing loss 25, autosomal recessive nonsyndromic hearing loss 79, autosomal recessive nonsyndromic hearing loss 84A, autosomal recessive nonsyndromic hearing loss 85, autosomal recessive nonsyndromic hearing loss 91, autosomal recessive nonsyndromic hearing loss 83, autosomal recessive nonsyndromic hearing loss 74, autosomal recessive nonsyndromic hearing loss 61, autosomal recessive nonsyndromic hearing loss 89, autosomal recessive nonsyndromic hearing loss 29, autosomal recessive nonsyndromic hearing loss 96, autosomal recessive nonsyndromic hearing loss 86, autosomal recessive nonsyndromic hearing loss 98, autosomal recessive nonsyndromic hearing loss 93, autosomal recessive nonsyndromic hearing loss 70, autosomal recessive nonsyndromic hearing loss 84B, autosomal recessive nonsyndromic hearing loss 18B, autosomal recessive nonsyndromic hearing loss 88, autosomal recessive nonsyndromic hearing loss 76, autosomal recessive nonsyndromic hearing loss 101, autosomal recessive nonsyndromic hearing loss 102, autosomal recessive nonsyndromic hearing loss 103, autosomal recessive nonsyndromic hearing loss 104, autosomal recessive nonsyndromic hearing loss 97, hearing loss, autosomal recessive 111, hearing loss, autosomal recessive 118, with cochlear aplasia, hearing loss, autosomal recessive 119, hearing loss, autosomal recessive 117, hearing loss, autosomal recessive 112, hearing loss, autosomal recessive 113, hearing loss, autosomal recessive 100, hearing loss, autosomal recessive 94, hearing loss, autosomal recessive 114, hearing loss, autosomal recessive 115, hearing loss, autosomal recessive 99, hearing loss, autosomal recessive 106, hearing loss, autosomal recessive 107, hearing loss, autosomal recessive 108, hearing loss, autosomal recessive 57, hearing loss, autosomal recessive 109, hearing loss, autosomal recessive 116, hearing loss, autosomal recessive 110, hearing loss, autosomal recessive 120, hearing loss, autosomal recessive 121, hearing loss, autosomal recessive 122, hearing loss, autosomal recessive 123, autosomal recessive nonsyndromic hearing loss 124, hearing loss, autosomal recessive 125
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
600 retrieved; paginated sample, class counts are floors:
182 uncertain significance, 125 likely pathogenic, 103 pathogenic, 83 conflicting classifications of pathogenicity, 76 pathogenic/likely pathogenic, 13 benign, 9 likely benign, 9 benign/likely benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 424816 | NM_000441.1(SLC26A4):c.[349C>T];[578C>T] | Pathogenic | no assertion criteria provided | |
| 3775116 | NM_012188.5(FOXI1):c.748dup (p.Asp250fs) | FOXI1 | Pathogenic | criteria provided, single submitter |
| 1033030 | NM_000441.2(SLC26A4):c.2184_2187dup (p.Gln730fs) | LOC123956210 | Pathogenic | criteria provided, single submitter |
| 188869 | NM_000441.2(SLC26A4):c.2127del (p.Phe709fs) | LOC123956210 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1929401 | NM_000441.2(SLC26A4):c.2113C>T (p.Gln705Ter) | LOC123956210 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3601760 | NM_000441.2(SLC26A4):c.2116T>C (p.Cys706Arg) | LOC123956210 | Pathogenic | criteria provided, single submitter |
| 3601761 | NM_000441.2(SLC26A4):c.2128G>T (p.Asp710Tyr) | LOC123956210 | Pathogenic | criteria provided, single submitter |
| 1033029 | NM_000441.2(SLC26A4):c.1615-2A>G | SLC26A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1065203 | NM_000441.2(SLC26A4):c.1786C>T (p.Gln596Ter) | SLC26A4 | Pathogenic | criteria provided, single submitter |
| 1065204 | NM_000441.2(SLC26A4):c.317C>A (p.Ala106Asp) | SLC26A4 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1065207 | NM_000441.2(SLC26A4):c.387del (p.Phe130fs) | SLC26A4 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1065210 | NM_000441.2(SLC26A4):c.754T>C (p.Ser252Pro) | SLC26A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1065211 | NM_000441.2(SLC26A4):c.415+2T>C | SLC26A4 | Pathogenic | criteria provided, single submitter |
| 1065212 | NM_000441.2(SLC26A4):c.1991C>T (p.Ala664Val) | SLC26A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1065213 | NM_000441.2(SLC26A4):c.1299dup (p.Ala434fs) | SLC26A4 | Pathogenic | no assertion criteria provided |
| 1068420 | NM_000441.2(SLC26A4):c.1803+2T>C | SLC26A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1069712 | NM_000441.2(SLC26A4):c.1614+1G>T | SLC26A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1070843 | NM_000441.2(SLC26A4):c.1984dup (p.Cys662fs) | SLC26A4 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1073256 | NM_000441.2(SLC26A4):c.25G>T (p.Glu9Ter) | SLC26A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1073278 | NM_000441.2(SLC26A4):c.1150-1G>T | SLC26A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1073634 | NM_000441.2(SLC26A4):c.1343C>A (p.Ser448Ter) | SLC26A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1074192 | NM_000441.2(SLC26A4):c.2026del (p.Leu676fs) | SLC26A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1075541 | NM_000441.2(SLC26A4):c.170C>A (p.Ser57Ter) | SLC26A4 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1075641 | NM_000441.2(SLC26A4):c.1150-1G>A | SLC26A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1185073 | NM_000441.2(SLC26A4):c.593_600+8del | SLC26A4 | Pathogenic | no assertion criteria provided |
| 1185667 | NM_000441.2(SLC26A4):c.3G>A (p.Met1Ile) | SLC26A4 | Pathogenic | no assertion criteria provided |
| 1185668 | NM_000441.2(SLC26A4):c.79T>C (p.Tyr27His) | SLC26A4 | Pathogenic | no assertion criteria provided |
| 1185669 | NM_000441.2(SLC26A4):c.305-1G>A | SLC26A4 | Pathogenic | no assertion criteria provided |
| 1185671 | NM_000441.2(SLC26A4):c.600+2T>C | SLC26A4 | Pathogenic | no assertion criteria provided |
| 1185672 | NM_000441.2(SLC26A4):c.667_669dup (p.Phe223dup) | SLC26A4 | Pathogenic | no assertion criteria provided |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 17 · Orphanet: 12 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| SLC26A4 | Definitive | Autosomal recessive | autosomal recessive nonsyndromic hearing loss 4 | 10 |
| FOXI1 | Limited | Autosomal recessive | autosomal recessive nonsyndromic hearing loss 4 | 7 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| FOXI1 | Orphanet:402041 | Autosomal recessive distal renal tubular acidosis |
| FOXI1 | Orphanet:705 | Pendred syndrome |
| SLC26A4 | Orphanet:705 | Pendred syndrome |
| SLC26A4 | Orphanet:90636 | Rare autosomal recessive non-syndromic sensorineural deafness type DFNB |
| SLC26A4 | Orphanet:95713 | Athyreosis |
| SLC26A4 | Orphanet:95720 | Thyroid hypoplasia |
| TJP2 | Orphanet:238475 | Familial hypercholanemia |
| TJP2 | Orphanet:480483 | Progressive familial intrahepatic cholestasis type 4 |
| TJP2 | Orphanet:90635 | Rare autosomal dominant non-syndromic sensorineural deafness type DFNA |
| KCNJ10 | Orphanet:199343 | EAST syndrome |
| KCNJ10 | Orphanet:705 | Pendred syndrome |
| KCNJ10 | Orphanet:98809 | Paroxysmal kinesigenic dyskinesia |
Cohort genes → proteins
5 cohort genes, 4 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 5 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| FOXI1 | HGNC:3815 | ENSG00000168269 | Q12951 | Forkhead box protein I1 | gencc,clinvar |
| SLC26A4 | HGNC:8818 | ENSG00000091137 | O43511 | Pendrin | gencc,clinvar |
| TJP2 | HGNC:11828 | ENSG00000119139 | Q9UDY2 | Tight junction protein 2 | clinvar |
| SLC26A4-AS1 | HGNC:22385 | ENSG00000233705 | SLC26A4 antisense RNA 1 | clinvar | |
| KCNJ10 | HGNC:6256 | ENSG00000177807 | P78508 | ATP-sensitive inward rectifier potassium channel 10 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| FOXI1 | Forkhead box protein I1 | Transcriptional activator required for the development of normal hearing, sense of balance and kidney function. |
| SLC26A4 | Pendrin | Sodium-independent transporter of chloride and iodide. |
| TJP2 | Tight junction protein 2 | Plays a role in tight junctions and adherens junctions. |
| KCNJ10 | ATP-sensitive inward rectifier potassium channel 10 | May be responsible for potassium buffering action of glial cells in the brain. |
Protein-family classification
Druggable: 2 · Difficult: 2 · Unknown: 1 · Druggable fraction: 0.4
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Ion channel | 1 | 22.3× | 0.157 |
| Transporter | 1 | 15.6× | 0.157 |
| Scaffold/PPI | 1 | 3.5× | 0.429 |
| Transcription factor | 1 | 1.6× | 0.595 |
| Other/Unknown | 1 | 0.4× | 0.983 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| FOXI1 | Transcription factor | no | Fork_head_dom, TF_fork_head_CS_1, TF_fork_head_CS_2 | |
| SLC26A4 | Transporter | yes | SLC26A/SulP_fam, STAS_dom, SLC26A/SulP_dom | |
| TJP2 | Scaffold/PPI | no | SH3_domain, PDZ, ZO | |
| SLC26A4-AS1 | Other/Unknown | no | ||
| KCNJ10 | Ion channel | yes | K_chnl_inward-rec_Kir1.2, K_chnl_inward-rec_Kir_cyto, Ig_E-set |
Expression context
Cohort genes with no expression data: 0.
5 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 5 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| right lobe of thyroid gland | 2 |
| thyroid gland | 2 |
| adult mammalian kidney | 1 |
| metanephros cortex | 1 |
| olfactory segment of nasal mucosa | 1 |
| palpebral conjunctiva | 1 |
| corpus callosum | 1 |
| descending thoracic aorta | 1 |
| thoracic aorta | 1 |
| left lobe of thyroid gland | 1 |
| C1 segment of cervical spinal cord | 1 |
| globus pallidus | 1 |
| medial globus pallidus | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| FOXI1 | 46 | tissue_specific | marker | metanephros cortex, adult mammalian kidney, olfactory segment of nasal mucosa |
| SLC26A4 | 190 | tissue_specific | marker | palpebral conjunctiva, right lobe of thyroid gland, thyroid gland |
| TJP2 | 134 | ubiquitous | marker | corpus callosum, descending thoracic aorta, thoracic aorta |
| SLC26A4-AS1 | 164 | tissue_specific | marker | right lobe of thyroid gland, thyroid gland, left lobe of thyroid gland |
| KCNJ10 | 185 | tissue_specific | marker | C1 segment of cervical spinal cord, medial globus pallidus, globus pallidus |
Protein interactions among cohort
Intra-cohort edges: 3.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| TJP2 | 2,916 |
| KCNJ10 | 1,862 |
| SLC26A4 | 1,648 |
| FOXI1 | 1,523 |
| SLC26A4-AS1 | 0 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| FOXI1 | KCNJ10 | string_interaction |
| FOXI1 | SLC26A4 | string_interaction |
| KCNJ10 | SLC26A4 | string_interaction |
Structural data
PDB: 2 · AlphaFold-only: 2 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| KCNJ10 | P78508 | 4 |
| TJP2 | Q9UDY2 | 2 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| SLC26A4 | O43511 | 82.72 |
| FOXI1 | Q12951 | 60.03 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 25. Enrichment computed across 5 evidence-associated genes (3 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 3 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Defective SLC26A4 causes Pendred syndrome (PDS) | 1 | 3806.7× | 0.007 | SLC26A4 |
| Potassium transport channels | 1 | 1268.9× | 0.010 | KCNJ10 |
| Inorganic anion exchange by SLC26 transporters | 1 | 423.0× | 0.014 | SLC26A4 |
| G protein gated Potassium channels | 1 | 380.7× | 0.014 | KCNJ10 |
| Apoptotic cleavage of cell adhesion proteins | 1 | 346.1× | 0.014 | TJP2 |
| Inwardly rectifying K+ channels | 1 | 237.9× | 0.015 | KCNJ10 |
| Activation of GABAB receptors | 1 | 200.3× | 0.015 | KCNJ10 |
| Signaling by Hippo | 1 | 181.3× | 0.015 | TJP2 |
| GABA B receptor activation | 1 | 181.3× | 0.015 | KCNJ10 |
| Activation of G protein gated Potassium channels | 1 | 131.3× | 0.017 | KCNJ10 |
| Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits | 1 | 131.3× | 0.017 | KCNJ10 |
| GABA receptor activation | 1 | 105.7× | 0.020 | KCNJ10 |
| SLC transporter disorders | 1 | 68.0× | 0.028 | SLC26A4 |
| RHOB GTPase cycle | 1 | 51.4× | 0.032 | TJP2 |
| RHOC GTPase cycle | 1 | 48.8× | 0.032 | TJP2 |
| Disorders of transmembrane transporters | 1 | 46.4× | 0.032 | SLC26A4 |
| Potassium Channels | 1 | 44.8× | 0.032 | KCNJ10 |
| R-HSA-425393 | 1 | 43.3× | 0.032 | SLC26A4 |
| Neurotransmitter receptors and postsynaptic signal transmission | 1 | 33.4× | 0.039 | KCNJ10 |
| Transmission across Chemical Synapses | 1 | 25.4× | 0.047 | KCNJ10 |
| RHOA GTPase cycle | 1 | 24.9× | 0.047 | TJP2 |
| SLC-mediated transmembrane transport | 1 | 19.7× | 0.057 | SLC26A4 |
| Neuronal System | 1 | 14.8× | 0.072 | KCNJ10 |
| Transport of small molecules | 1 | 8.4× | 0.119 | SLC26A4 |
| Disease | 1 | 4.4× | 0.212 | SLC26A4 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| glutamate reuptake | 1 | 2106.5× | 0.010 | KCNJ10 |
| inorganic anion transport | 1 | 1404.3× | 0.010 | SLC26A4 |
| positive regulation of blood-brain barrier permeability | 1 | 842.6× | 0.010 | TJP2 |
| iodide transport | 1 | 601.9× | 0.010 | SLC26A4 |
| regulation of membrane permeability | 1 | 601.9× | 0.010 | TJP2 |
| protein localization to cell-cell junction | 1 | 468.1× | 0.010 | TJP2 |
| homotypic cell-cell adhesion | 1 | 421.3× | 0.010 | TJP2 |
| regulation of pH | 1 | 351.1× | 0.010 | SLC26A4 |
| establishment of endothelial intestinal barrier | 1 | 351.1× | 0.010 | TJP2 |
| regulation of resting membrane potential | 1 | 324.1× | 0.010 | KCNJ10 |
| intestinal absorption | 1 | 300.9× | 0.010 | TJP2 |
| sulfate transmembrane transport | 1 | 300.9× | 0.010 | SLC26A4 |
| cellular response to potassium ion | 1 | 263.3× | 0.010 | KCNJ10 |
| central nervous system myelination | 1 | 247.8× | 0.010 | KCNJ10 |
| regulation of long-term neuronal synaptic plasticity | 1 | 247.8× | 0.010 | KCNJ10 |
| potassium ion homeostasis | 1 | 191.5× | 0.011 | KCNJ10 |
| embryo development ending in birth or egg hatching | 1 | 183.2× | 0.011 | FOXI1 |
| regulation of monoatomic ion transmembrane transport | 1 | 183.2× | 0.011 | KCNJ10 |
| cell-cell junction organization | 1 | 156.0× | 0.012 | TJP2 |
| adult walking behavior | 1 | 123.9× | 0.014 | KCNJ10 |
| maintenance of blood-brain barrier | 1 | 120.4× | 0.014 | TJP2 |
| potassium ion import across plasma membrane | 1 | 91.6× | 0.018 | KCNJ10 |
| inner ear morphogenesis | 1 | 75.2× | 0.021 | FOXI1 |
| non-motile cilium assembly | 1 | 72.6× | 0.021 | KCNJ10 |
| chloride transmembrane transport | 1 | 59.3× | 0.024 | SLC26A4 |
| regulation of protein localization | 1 | 51.4× | 0.027 | SLC26A4 |
| potassium ion transport | 1 | 47.9× | 0.028 | KCNJ10 |
| monoatomic ion transport | 1 | 39.0× | 0.033 | SLC26A4 |
| anatomical structure morphogenesis | 1 | 34.8× | 0.035 | FOXI1 |
| potassium ion transmembrane transport | 1 | 34.0× | 0.035 | KCNJ10 |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 5
Druggability breadth: 2 of 5 evidence-associated genes (40%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| FOXI1 | 0 | 0 |
| SLC26A4 | 0 | 0 |
| TJP2 | 0 | 0 |
| SLC26A4-AS1 | 0 | 0 |
| KCNJ10 | 0 | 0 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 0.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| SLC26A4 | 37 | Binding:37 |
| KCNJ10 | 10 | Binding:10 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 4; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 1 | KCNJ10 |
| D | Druggable family + AlphaFold only, no drug | 1 | SLC26A4 |
| E | Difficult family or no structure, no drug | 3 | FOXI1, TJP2, SLC26A4-AS1 |
Undrugged target profiles
5 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| FOXI1 | 0 | — |
| SLC26A4 | 37 | — |
| TJP2 | 0 | — |
| SLC26A4-AS1 | 0 | — |
| KCNJ10 | 10 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 2.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 2 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT02798783 | Not specified | COMPLETED | Enlarged Vestibular Aqueduct Registry |
| NCT04934605 | Not specified | UNKNOWN | Genotype-phenotype Correlation of SLC26A4 in CI Patients With EVA |
Related Atlas pages
- Cohort genes: FOXI1, SLC26A4, TJP2, SLC26A4-AS1, KCNJ10