Cerebellar dysfunction with variable cognitive and behavioral abnormalities
diseaseOn this page
Also known as CAMTA1-related disorderCANPMRcerebellar ataxia, nonprogressive, with intellectual disabilitycerebellar ataxia, nonprogressive, with mental retardationnon-progressive cerebellar ataxia with intellectual disabilitynonprogressive cerebellar ataxia with intellectual disability
Summary
Cerebellar dysfunction with variable cognitive and behavioral abnormalities (MONDO:0013886) is a disease caused by CAMTA1 (GenCC Definitive), with 7 cohort genes.
At a glance
- Prevalence: <1 / 1 000 000 (Worldwide) [Orphanet-validated]
- Causal gene: CAMTA1 (GenCC Definitive)
- Cohort genes: 7
- ClinVar variants: 177
- Phenotypes (HPO): 39
Clinical features
Epidemiology
Prevalence records
2 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Cases/families | 15 | Worldwide | Validated | |
| Point prevalence | <1 / 1 000 000 | Worldwide | Validated |
Signs & symptoms
Clinical features (HPO)
39 HPO clinical features (Orphanet curated; top 39 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0001256 | Intellectual disability, mild | Very frequent (80-99%) |
| HP:0001263 | Global developmental delay | Very frequent (80-99%) |
| HP:0000179 | Thick lower lip vermilion | Frequent (30-79%) |
| HP:0000276 | Long face | Frequent (30-79%) |
| HP:0000307 | Pointed chin | Frequent (30-79%) |
| HP:0000343 | Long philtrum | Frequent (30-79%) |
| HP:0000414 | Bulbous nose | Frequent (30-79%) |
| HP:0000445 | Wide nose | Frequent (30-79%) |
| HP:0000463 | Anteverted nares | Frequent (30-79%) |
| HP:0000486 | Strabismus | Frequent (30-79%) |
| HP:0000490 | Deeply set eye | Frequent (30-79%) |
| HP:0000718 | Aggressive behavior | Frequent (30-79%) |
| HP:0000729 | Autistic behavior | Frequent (30-79%) |
| HP:0000750 | Delayed speech and language development | Frequent (30-79%) |
| HP:0001251 | Ataxia | Frequent (30-79%) |
| HP:0001260 | Dysarthria | Frequent (30-79%) |
| HP:0001310 | Dysmetria | Frequent (30-79%) |
| HP:0001319 | Neonatal hypotonia | Frequent (30-79%) |
| HP:0001321 | Cerebellar hypoplasia | Frequent (30-79%) |
| HP:0002019 | Constipation | Frequent (30-79%) |
| HP:0002317 | Unsteady gait | Frequent (30-79%) |
| HP:0002354 | Memory impairment | Frequent (30-79%) |
| HP:0002470 | Nonprogressive cerebellar ataxia | Frequent (30-79%) |
| HP:0002536 | Abnormal cortical gyration | Frequent (30-79%) |
| HP:0011166 | Focal myoclonic seizure | Frequent (30-79%) |
| HP:0012433 | Abnormal social behavior | Frequent (30-79%) |
| HP:0000639 | Nystagmus | Excluded (0%) |
| HP:0002403 | Positive Romberg sign | Excluded (0%) |
| HP:0000160 | Narrow mouth | Very rare (<1-4%) |
| HP:0000256 | Macrocephaly | Very rare (<1-4%) |
| HP:0001348 | Brisk reflexes | Very rare (<1-4%) |
| HP:0002003 | Large forehead | Very rare (<1-4%) |
| HP:0002080 | Intention tremor | Very rare (<1-4%) |
| HP:0002120 | Cerebral cortical atrophy | Very rare (<1-4%) |
| HP:0007256 | Abnormal pyramidal sign | Very rare (<1-4%) |
| HP:0011067 | Mesiodens | Very rare (<1-4%) |
| HP:0025517 | Hypoplastic hippocampus | Very rare (<1-4%) |
| HP:0100540 | Palpebral edema | Very rare (<1-4%) |
| HP:0400005 | Short ear | Very rare (<1-4%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | cerebellar dysfunction with variable cognitive and behavioral abnormalities |
| Mondo ID | MONDO:0013886 |
| OMIM | 614756 |
| Orphanet | 314647 |
| DOID | DOID:0050998 |
| SNOMED CT | 723441001 |
| UMLS | C3553661 |
| MedGen | 766575 |
| GARD | 0017429 |
| Is cancer (heuristic) | no |
Also known as: CAMTA1-related disorder · CANPMR · cerebellar ataxia, nonprogressive, with intellectual disability · cerebellar ataxia, nonprogressive, with mental retardation · cerebellar dysfunction with variable cognitive and behavioral abnormalities · non-progressive cerebellar ataxia with intellectual disability · nonprogressive cerebellar ataxia with intellectual disability
Data availability: 177 ClinVar variants · 4 GenCC gene-disease records.
Disease family
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › autosomal genetic disease › autosomal dominant disease › autosomal dominant cerebellar ataxia › autosomal dominant cerebellar ataxia type I › cerebellar dysfunction with variable cognitive and behavioral abnormalities
Related subtypes (29): Machado-Joseph disease, spinocerebellar ataxia type 29, spinocerebellar ataxia type 34, spinocerebellar ataxia type 1, spinocerebellar ataxia type 2, spinocerebellar ataxia type 4, cerebellar ataxia-areflexia-pes cavus-optic atrophy-sensorineural hearing loss syndrome, autosomal dominant cerebellar ataxia, deafness and narcolepsy, spinocerebellar ataxia type 12, spinocerebellar ataxia type 13, spinocerebellar ataxia type 14, spinocerebellar ataxia type 15/16, spinocerebellar ataxia type 17, spinocerebellar ataxia type 19/22, spinocerebellar ataxia type 21, spinocerebellar ataxia type 18, spinocerebellar ataxia type 20, spinocerebellar ataxia type 25, spinocerebellar ataxia type 8, spinocerebellar ataxia type 27, spinocerebellar ataxia type 23, spinocerebellar ataxia type 28, spinocerebellar ataxia type 35, spinocerebellar ataxia type 32, spinocerebellar ataxia type 36, spinocerebellar ataxia type 37, spinocerebellar ataxia type 40, spinocerebellar ataxia 46, neurodevelopmental disorder with motor abnormalities, seizures, and facial dysmorphism
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
177 retrieved; paginated sample, class counts are floors:
91 uncertain significance, 25 pathogenic, 23 likely pathogenic, 10 benign, 8 likely benign, 7 conflicting classifications of pathogenicity, 7 benign/likely benign, 6 pathogenic/likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1334751 | NM_015215.4(CAMTA1):c.4744C>T (p.Arg1582Ter) | CAMTA1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1342305 | NM_015215.4(CAMTA1):c.180_183del (p.Leu61fs) | CAMTA1 | Pathogenic | no assertion criteria provided |
| 1342309 | NM_015215.4(CAMTA1):c.404A>G (p.Glu135Gly) | CAMTA1 | Pathogenic | no assertion criteria provided |
| 1685599 | NM_015215.4(CAMTA1):c.3142C>T (p.Arg1048Ter) | CAMTA1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1700201 | NM_015215.4(CAMTA1):c.4767del (p.Lys1589fs) | CAMTA1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1723214 | NM_015215.4(CAMTA1):c.1798dup (p.Ser600fs) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 1804080 | NM_015215.4(CAMTA1):c.2416_2419del (p.Ser806fs) | CAMTA1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2582483 | NM_015215.4(CAMTA1):c.1828C>T (p.Gln610Ter) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 280426 | NM_015215.4(CAMTA1):c.4231C>T (p.Arg1411Ter) | CAMTA1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 280872 | NM_015215.4(CAMTA1):c.882del (p.Tyr297fs) | CAMTA1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 3254720 | NM_015215.4(CAMTA1):c.2072_2075del (p.Thr691fs) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 3376151 | NM_015215.4(CAMTA1):c.578del (p.Gly193fs) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 37006 | NC_000001.10:g.7119268_7200395del | CAMTA1 | Pathogenic | no assertion criteria provided |
| 37007 | NC_000001.10:g.6882372_7422115dup | CAMTA1 | Pathogenic | no assertion criteria provided |
| 37008 | NC_000001.9:g.6777038_6826186del | CAMTA1 | Pathogenic | no assertion criteria provided |
| 3901214 | NM_015215.4(CAMTA1):c.4116_4129delinsCACGGTAGG (p.Glu1373fs) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 3902685 | NC_000001.10:g.(7700614_7721785)_(7737794_7792507)del | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 390487 | NM_015215.4(CAMTA1):c.4921C>T (p.Arg1641Ter) | CAMTA1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 4056332 | NM_015215.4(CAMTA1):c.271G>T (p.Glu91Ter) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 4082349 | NM_015215.4:c.(234+1_235-1)_(438+1_439-1)del | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 422992 | NM_015215.4(CAMTA1):c.838del (p.Ser280fs) | CAMTA1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 426685 | NM_015215.4(CAMTA1):c.627del (p.Lys208_Trp209insTer) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 432176 | NM_015215.4(CAMTA1):c.4780C>T (p.Arg1594Ter) | CAMTA1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 4813051 | NM_015215.4(CAMTA1):c.1747C>T (p.Gln583Ter) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 4813437 | NM_015215.4(CAMTA1):c.294del (p.Lys99fs) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 599309 | NM_015215.4(CAMTA1):c.511-18459_511-15460del | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 801430 | NM_015215.4(CAMTA1):c.2639G>A (p.Trp880Ter) | CAMTA1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 973263 | NM_015215.4(CAMTA1):c.4049_4051delinsGTGCTGC (p.Pro1350fs) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 976737 | NM_015215.4(CAMTA1):c.3585_3592del (p.Trp1197fs) | CAMTA1 | Pathogenic | criteria provided, single submitter |
| 982402 | NM_015215.4(CAMTA1):c.249_252del (p.Ala82_Tyr83insTer) | CAMTA1 | Pathogenic | no assertion criteria provided |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 4 · Orphanet: 7 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| CAMTA1 | Definitive | Autosomal dominant | cerebellar dysfunction with variable cognitive and behavioral abnormalities | 4 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| CAMTA1 | Orphanet:157791 | Epithelioid hemangioendothelioma |
| CAMTA1 | Orphanet:314647 | Non-progressive cerebellar ataxia with intellectual disability |
| SLC9A1 | Orphanet:448251 | Progressive autosomal recessive ataxia-deafness syndrome |
| PRDM16 | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| PRDM16 | Orphanet:1606 | 1p36 deletion syndrome |
| PRDM16 | Orphanet:54260 | Left ventricular noncompaction |
| NID1 | Orphanet:269215 | Isolated Dandy-Walker malformation without hydrocephalus |
Cohort genes → proteins
7 cohort genes, 6 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 7 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| CAMTA1 | HGNC:18806 | ENSG00000171735 | Q9Y6Y1 | Calmodulin-binding transcription activator 1 | gencc,clinvar |
| SLC9A1 | HGNC:11071 | ENSG00000090020 | P19634 | Sodium/hydrogen exchanger 1 | clinvar |
| PRDM16 | HGNC:14000 | ENSG00000142611 | Q9HAZ2 | Histone-lysine N-methyltransferase PRDM16 | clinvar |
| CAMTA2 | HGNC:18807 | ENSG00000108509 | O94983 | Calmodulin-binding transcription activator 2 | clinvar |
| CFAP107 | HGNC:28567 | ENSG00000157330 | Q8N1D5 | Cilia- and flagella-associated protein 107 | clinvar |
| OBI1-AS1 | HGNC:42700 | ENSG00000234377 | OBI1 antisense RNA 1 | clinvar | |
| NID1 | HGNC:7821 | ENSG00000116962 | P14543 | Nidogen-1 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| CAMTA1 | Calmodulin-binding transcription activator 1 | Transcriptional activator. |
| SLC9A1 | Sodium/hydrogen exchanger 1 | Electroneutral Na(+) /H(+) antiporter that extrudes Na(+) in exchange for external protons driven by the inward sodium ion chemical gradient, protecting cells from acidification that occurs from metabolism. |
| PRDM16 | Histone-lysine N-methyltransferase PRDM16 | Transcription regulator that acts both as a histone methyltransferase or chromatin adapter, depending on the context. |
| CAMTA2 | Calmodulin-binding transcription activator 2 | Transcription activator. |
| CFAP107 | Cilia- and flagella-associated protein 107 | Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia axoneme, which is required for motile cilia beating. |
| NID1 | Nidogen-1 | Sulfated glycoprotein widely distributed in basement membranes and tightly associated with laminin. |
Protein-family classification
Druggable: 2 · Difficult: 1 · Unknown: 4 · Druggable fraction: 0.29
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Antibody/Immunoglobulin | 2 | 8.3× | 0.066 |
| Transcription factor | 1 | 1.2× | 0.626 |
| Other/Unknown | 4 | 1.0× | 0.626 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| CAMTA1 | Antibody/Immunoglobulin | yes | IQ_motif_EF-hand-BS, Ankyrin_rpt, IPT_dom | |
| SLC9A1 | Other/Unknown | no | NHE-1-like, NaH_exchanger, Cation/H_exchanger_TM | |
| PRDM16 | Transcription factor | no | 2.1.1.367 | SET_dom, Znf_C2H2_type, Znf_C2H2_sf |
| CAMTA2 | Antibody/Immunoglobulin | yes | IPT_dom, CG-1_dom, Ig-like_fold | |
| CFAP107 | Other/Unknown | no | CFAP68/107, CFAP107 | |
| OBI1-AS1 | Other/Unknown | no | ||
| NID1 | Other/Unknown | no | LDLR_classB_rpt, EGF-type_Asp/Asn_hydroxyl_site, Thyroglobulin_1 |
Expression context
Cohort genes with no expression data: 0.
7 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 7 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| parotid gland | 2 |
| heart right ventricle | 1 |
| postcentral gyrus | 1 |
| mucosa of transverse colon | 1 |
| oocyte | 1 |
| ascending aorta | 1 |
| pigmented layer of retina | 1 |
| sural nerve | 1 |
| cerebellar hemisphere | 1 |
| right frontal lobe | 1 |
| right hemisphere of cerebellum | 1 |
| bronchial epithelial cell | 1 |
| bronchus | 1 |
| right uterine tube | 1 |
| caudate nucleus | 1 |
| corpus callosum | 1 |
| male germ line stem cell (sensu Vertebrata) in testis | 1 |
| lower lobe of lung | 1 |
| mucosa of stomach | 1 |
| stromal cell of endometrium | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| CAMTA1 | 287 | ubiquitous | marker | parotid gland, postcentral gyrus, heart right ventricle |
| SLC9A1 | 273 | ubiquitous | marker | parotid gland, mucosa of transverse colon, oocyte |
| PRDM16 | 202 | broad | marker | sural nerve, pigmented layer of retina, ascending aorta |
| CAMTA2 | 239 | ubiquitous | marker | right hemisphere of cerebellum, cerebellar hemisphere, right frontal lobe |
| CFAP107 | 96 | tissue_specific | marker | right uterine tube, bronchial epithelial cell, bronchus |
| OBI1-AS1 | 121 | tissue_specific | marker | male germ line stem cell (sensu Vertebrata) in testis, caudate nucleus, corpus callosum |
| NID1 | 262 | ubiquitous | marker | stromal cell of endometrium, mucosa of stomach, lower lobe of lung |
Protein interactions among cohort
Intra-cohort edges: 1.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| PRDM16 | 2,633 |
| SLC9A1 | 2,023 |
| NID1 | 1,702 |
| CAMTA1 | 994 |
| CFAP107 | 695 |
| CAMTA2 | 641 |
| OBI1-AS1 | 0 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| CAMTA1 | CAMTA2 | string_interaction |
Structural data
PDB: 4 · AlphaFold-only: 2 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| SLC9A1 | P19634 | 20 |
| PRDM16 | Q9HAZ2 | 2 |
| CFAP107 | Q8N1D5 | 2 |
| CAMTA1 | Q9Y6Y1 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| NID1 | P14543 | 78.50 |
| CAMTA2 | O94983 | 60.82 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 13. Enrichment computed across 7 evidence-associated genes (3 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 3 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Sodium/Proton exchangers | 1 | 423.0× | 0.018 | SLC9A1 |
| Hyaluronan metabolism | 1 | 317.2× | 0.018 | SLC9A1 |
| Hyaluronan degradation | 1 | 237.9× | 0.018 | SLC9A1 |
| Laminin interactions | 1 | 126.9× | 0.020 | NID1 |
| Transcriptional regulation of brown and beige adipocyte differentiation by EBF2 | 1 | 126.9× | 0.020 | PRDM16 |
| Glycosaminoglycan metabolism | 1 | 73.2× | 0.029 | SLC9A1 |
| PKMTs methylate histone lysines | 1 | 53.6× | 0.033 | PRDM16 |
| R-HSA-425393 | 1 | 43.3× | 0.033 | SLC9A1 |
| Metabolism of carbohydrates and carbohydrate derivatives | 1 | 40.1× | 0.033 | SLC9A1 |
| Degradation of the extracellular matrix | 1 | 39.2× | 0.033 | NID1 |
| SLC-mediated transmembrane transport | 1 | 19.7× | 0.059 | SLC9A1 |
| Transport of small molecules | 1 | 8.4× | 0.124 | SLC9A1 |
| Metabolism | 1 | 3.9× | 0.237 | SLC9A1 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 6 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| positive regulation of calcineurin-NFAT signaling cascade | 2 | 267.5× | 0.002 | CAMTA1, SLC9A1 |
| positive regulation of mitochondrial membrane permeability | 1 | 1404.3× | 0.012 | SLC9A1 |
| regulation of the force of heart contraction by cardiac conduction | 1 | 1404.3× | 0.012 | SLC9A1 |
| negative regulation of white fat cell differentiation | 1 | 1404.3× | 0.012 | PRDM16 |
| beige fat cell differentiation | 1 | 936.2× | 0.013 | PRDM16 |
| tolerance induction in gut-associated lymphoid tissue | 1 | 702.2× | 0.013 | PRDM16 |
| positive regulation of the force of heart contraction | 1 | 561.7× | 0.013 | SLC9A1 |
| regulation of cellular respiration | 1 | 468.1× | 0.013 | PRDM16 |
| regulation of basement membrane organization | 1 | 468.1× | 0.013 | NID1 |
| maintenance of cell polarity | 1 | 401.2× | 0.013 | SLC9A1 |
| cellular response to antibiotic | 1 | 401.2× | 0.013 | SLC9A1 |
| regulation of cardiac muscle cell membrane potential | 1 | 401.2× | 0.013 | SLC9A1 |
| negative regulation of granulocyte differentiation | 1 | 351.1× | 0.013 | PRDM16 |
| regulatory T cell differentiation | 1 | 351.1× | 0.013 | PRDM16 |
| positive regulation of action potential | 1 | 351.1× | 0.013 | SLC9A1 |
| negative regulation of muscle cell differentiation | 1 | 280.9× | 0.013 | PRDM16 |
| cardiac muscle cell contraction | 1 | 280.9× | 0.013 | SLC9A1 |
| glomerular basement membrane development | 1 | 255.3× | 0.013 | NID1 |
| regulation of pH | 1 | 234.1× | 0.013 | SLC9A1 |
| response to acidic pH | 1 | 216.1× | 0.013 | SLC9A1 |
| regulation of cardiac muscle contraction by calcium ion signaling | 1 | 216.1× | 0.013 | SLC9A1 |
| heterochromatin organization | 1 | 216.1× | 0.013 | PRDM16 |
| cellular response to electrical stimulus | 1 | 216.1× | 0.013 | SLC9A1 |
| cellular response to epinephrine stimulus | 1 | 216.1× | 0.013 | SLC9A1 |
| positive regulation of integrin-mediated signaling pathway | 1 | 216.1× | 0.013 | NID1 |
| positive regulation of muscle cell differentiation | 1 | 187.2× | 0.013 | NID1 |
| cardiac muscle hypertrophy in response to stress | 1 | 175.5× | 0.013 | CAMTA2 |
| sodium ion export across plasma membrane | 1 | 175.5× | 0.013 | SLC9A1 |
| cellular response to cold | 1 | 175.5× | 0.013 | SLC9A1 |
| hyaluronan catabolic process | 1 | 165.2× | 0.013 | SLC9A1 |
Therapeutics
Drug target analysis
Approved (phase 4): 1 · Phase ≥3: 1 · Phased (≥1): 1 · Undrugged: 6
Druggability breadth: 2 of 7 evidence-associated genes (29%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| SLC9A1 | AMILORIDE |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| SLC9A1 | 6 | 4 |
| CAMTA1 | 0 | 0 |
| PRDM16 | 0 | 0 |
| CAMTA2 | 0 | 0 |
| CFAP107 | 0 | 0 |
| OBI1-AS1 | 0 | 0 |
| NID1 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| AMILORIDE | 4 | SLC9A1 |
| SABIPORIDE | 2 | SLC9A1 |
| RIMEPORIDE | 2 | SLC9A1 |
| ZONIPORIDE | 2 | SLC9A1 |
| CARIPORIDE | 2 | SLC9A1 |
| ENIPORIDE | 2 | SLC9A1 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 1.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| SLC9A1 | 36 | Binding:28, Functional:7, ADMET:1 |
| PRDM16 | 2 | Binding:2 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| PRDM16 | 2.1.1.367, 2.1.1.370 | [histone H3]-lysine9 N-methyltransferase, [histone H3]-lysine4 N-dimethyltransferase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 6; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
6 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| AMILORIDE | 4 | SLC9A1 |
| SABIPORIDE | 2 | SLC9A1 |
| RIMEPORIDE | 2 | SLC9A1 |
| ZONIPORIDE | 2 | SLC9A1 |
| CARIPORIDE | 2 | SLC9A1 |
| ENIPORIDE | 2 | SLC9A1 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 1 | SLC9A1 |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 1 | CAMTA1 |
| D | Druggable family + AlphaFold only, no drug | 1 | CAMTA2 |
| E | Difficult family or no structure, no drug | 4 | PRDM16, CFAP107, OBI1-AS1, NID1 |
Undrugged target profiles
6 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| CAMTA1 | 0 | — |
| PRDM16 | 2 | — |
| CAMTA2 | 0 | — |
| CFAP107 | 0 | — |
| OBI1-AS1 | 0 | — |
| NID1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.