Charcot-Marie-Tooth disease type 2A2
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Also known as Charcot-Marie-Tooth disease type 2 caused by mutation in MFN2Charcot-Marie-Tooth disease type 2A2ACharcot-Marie-Tooth disease, axonal, type 2A2Charcot-Marie-Tooth disease, axonal, type 2A2ACMT2A2CMT2A2Ahereditary motor and sensory neuropathy IIA2HMSN IIA2HMSN2A2MFN2 Charcot-Marie-Tooth disease type 2
Summary
Charcot-Marie-Tooth disease type 2A2 (MONDO:0012231) is a disease caused by MFN2 (GenCC Strong), with 3 cohort genes and 1 clinical trial.
At a glance
- Prevalence: Unknown (Worldwide)
- Causal gene: MFN2 (GenCC Strong)
- Cohort genes: 3
- ClinVar variants: 127
- Phenotypes (HPO): 45
- Clinical trials: 1
Clinical features
Signs & symptoms
Clinical features (HPO)
45 HPO clinical features (Orphanet curated; top 45 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0001760 | Abnormal foot morphology | Very frequent (80-99%) |
| HP:0003390 | Sensory axonal neuropathy | Very frequent (80-99%) |
| HP:0003438 | Absent Achilles reflex | Very frequent (80-99%) |
| HP:0003444 | EMG: chronic denervation signs | Very frequent (80-99%) |
| HP:0003474 | Somatic sensory dysfunction | Very frequent (80-99%) |
| HP:0009027 | Foot dorsiflexor weakness | Very frequent (80-99%) |
| HP:0001155 | Abnormality of the hand | Frequent (30-79%) |
| HP:0001761 | Pes cavus | Frequent (30-79%) |
| HP:0002359 | Frequent falls | Frequent (30-79%) |
| HP:0002378 | Hand tremor | Frequent (30-79%) |
| HP:0002495 | Impaired vibratory sensation | Frequent (30-79%) |
| HP:0002522 | Areflexia of lower limbs | Frequent (30-79%) |
| HP:0002601 | Paresis of extensor muscles of the big toe | Frequent (30-79%) |
| HP:0002936 | Distal sensory impairment | Frequent (30-79%) |
| HP:0003394 | Muscle spasm | Frequent (30-79%) |
| HP:0003551 | Difficulty climbing stairs | Frequent (30-79%) |
| HP:0006460 | Increased laxity of ankles | Frequent (30-79%) |
| HP:0007010 | Poor fine motor coordination | Frequent (30-79%) |
| HP:0007328 | Impaired pain sensation | Frequent (30-79%) |
| HP:0009046 | Difficulty running | Frequent (30-79%) |
| HP:0009053 | Distal lower limb muscle weakness | Frequent (30-79%) |
| HP:0010829 | Impaired temperature sensition | Frequent (30-79%) |
| HP:0025238 | Foot pain | Frequent (30-79%) |
| HP:0030237 | Hand muscle weakness | Frequent (30-79%) |
| HP:0001371 | Flexion contracture | Occasional (5-29%) |
| HP:0001605 | Vocal cord paralysis | Occasional (5-29%) |
| HP:0001609 | Hoarse voice | Occasional (5-29%) |
| HP:0001618 | Dysphonia | Occasional (5-29%) |
| HP:0002143 | Abnormality of the spinal cord | Occasional (5-29%) |
| HP:0002174 | Postural tremor | Occasional (5-29%) |
| HP:0003376 | Steppage gait | Occasional (5-29%) |
| HP:0003401 | Paresthesia | Occasional (5-29%) |
| HP:0003487 | Babinski sign | Occasional (5-29%) |
| HP:0003731 | Quadriceps muscle weakness | Occasional (5-29%) |
| HP:0006844 | Absent patellar reflexes | Occasional (5-29%) |
| HP:0006915 | Inability to walk by childhood/adolescence | Occasional (5-29%) |
| HP:0008944 | Distal lower limb amyotrophy | Occasional (5-29%) |
| HP:0012452 | Restless legs | Occasional (5-29%) |
| HP:0012513 | Upper limb pain | Occasional (5-29%) |
| HP:0031108 | Triceps weakness | Occasional (5-29%) |
| HP:0000238 | Hydrocephalus | Very rare (<1-4%) |
| HP:0000407 | Sensorineural hearing impairment | Very rare (<1-4%) |
| HP:0000648 | Optic atrophy | Very rare (<1-4%) |
| HP:0000662 | Nyctalopia | Very rare (<1-4%) |
| HP:0002650 | Scoliosis | Very rare (<1-4%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | Charcot-Marie-Tooth disease type 2A2 |
| Mondo ID | MONDO:0012231 |
| MeSH | C563757 |
| OMIM | 609260 |
| Orphanet | 99947 |
| DOID | DOID:0110155 |
| ICD-11 | 1274363794 |
| NCIT | C150646 |
| SNOMED CT | 764850002 |
| UMLS | C4721887 |
| MedGen | 1648317 |
| GARD | 0016925 |
| Is cancer (heuristic) | no |
Also known as: Charcot-Marie-Tooth disease type 2 caused by mutation in MFN2 · Charcot-Marie-Tooth disease type 2A2A · Charcot-Marie-Tooth disease, axonal, type 2A2 · Charcot-Marie-Tooth disease, axonal, type 2A2A · CMT2A2 · CMT2A2A · hereditary motor and sensory neuropathy IIA2 · HMSN IIA2 · HMSN2A2 · MFN2 Charcot-Marie-Tooth disease type 2
Data availability: 127 ClinVar variants · 2 GenCC gene-disease records · 16 cell lines.
Disease family
Classification path: disease › human disease › disease by body system or component › nervous system disorder › peripheral nervous system disorder › peripheral neuropathy › hereditary peripheral neuropathy › Charcot-Marie-Tooth disease › Charcot-Marie-Tooth disease type 2 › Charcot-Marie-Tooth disease type 2A2
Related subtypes (37): Charcot-Marie-Tooth disease type 2A1, Charcot-Marie-Tooth disease type 2B, Charcot-Marie-Tooth disease type 2D, Charcot-Marie-Tooth disease type 2B1, Charcot-Marie-Tooth disease type 2B2, Charcot-Marie-Tooth disease axonal type 2C, Charcot-Marie-Tooth disease axonal type 2F, Charcot-Marie-Tooth disease type 2I, Charcot-Marie-Tooth disease type 2E, Charcot-Marie-Tooth disease axonal type 2H, Charcot-Marie-Tooth disease type 2J, Charcot-Marie-Tooth disease axonal type 2K, Charcot-Marie-Tooth disease axonal type 2L, giant axonal neuropathy 2, Charcot-Marie-Tooth disease axonal type 2N, Charcot-Marie-Tooth disease axonal type 2O, Charcot-Marie-Tooth disease axonal type 2P, Charcot-Marie-Tooth disease axonal type 2Q, Charcot-Marie-Tooth disease type 2R, Charcot-Marie-Tooth disease axonal type 2S, Charcot-Marie-Tooth disease axonal type 2U, Charcot-Marie-Tooth disease axonal type 2V, autosomal dominant Charcot-Marie-Tooth disease type 2W, Charcot-Marie-Tooth disease axonal type 2X, Charcot-Marie-Tooth disease type 2Y, Charcot-Marie-Tooth disease axonal type 2Z, Charcot-Marie-Tooth disease axonal type 2CC, autosomal dominant Charcot-Marie-Tooth disease type 2M, Charcot-Marie-Tooth disease type 2B5, autosomal dominant Charcot-Marie-Tooth disease type 2 due to KIF5A mutation, autosomal dominant Charcot-Marie-Tooth disease type 2 due to TFG mutation, autosomal dominant Charcot-Marie-Tooth disease type 2K, Charcot-Marie-Tooth disease, axonal, type 2EE, autosomal dominant charcot-marie-tooth disease type 2 due to DGAT2 mutation, Charcot-Marie-Tooth disease type 2T, MME-related autosomal dominant Charcot Marie Tooth disease type 2, Charcot-Marie-tooth disease, axonal, type 2DD
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
127 retrieved; paginated sample, class counts are floors:
35 uncertain significance, 27 conflicting classifications of pathogenicity, 21 pathogenic/likely pathogenic, 20 likely pathogenic, 18 pathogenic, 5 benign/likely benign, 1 not provided
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 545677 | NM_000701.8(ATP1A1):c.143T>G (p.Leu48Arg) | ATP1A1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 545678 | NM_000701.8(ATP1A1):c.1798C>G (p.Pro600Ala) | ATP1A1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 545680 | NM_000701.8(ATP1A1):c.1775T>C (p.Ile592Thr) | ATP1A1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 39565 | NM_018706.7(DHTKD1):c.1228C>T (p.Arg410Ter) | DHTKD1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1193107 | NM_014874.4(MFN2):c.382C>T (p.His128Tyr) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 155730 | NM_014874.4(MFN2):c.775C>T (p.Arg259Cys) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 202171 | NM_014874.4(MFN2):c.746C>T (p.Ser249Phe) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 214652 | NM_014874.4(MFN2):c.314C>T (p.Thr105Met) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 217161 | NM_014874.4(MFN2):c.1126A>G (p.Met376Val) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 217162 | NM_014874.4(MFN2):c.2256C>A (p.Tyr752Ter) | MFN2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 217163 | NM_014874.4(MFN2):c.436C>T (p.Leu146Phe) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 217164 | NM_014874.4(MFN2):c.494A>G (p.His165Arg) | MFN2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2268 | NM_014874.4(MFN2):c.281G>A (p.Arg94Gln) | MFN2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2269 | NM_014874.4(MFN2):c.2219G>C (p.Trp740Ser) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2270 | NM_014874.4(MFN2):c.227T>C (p.Leu76Pro) | MFN2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2271 | NM_014874.4(MFN2):c.839G>A (p.Arg280His) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2272 | NM_014874.4(MFN2):c.751C>G (p.Pro251Ala) | MFN2 | Pathogenic | criteria provided, single submitter |
| 2273 | NM_014874.4(MFN2):c.205G>T (p.Val69Phe) | MFN2 | Pathogenic | no assertion criteria provided |
| 2274 | NM_014874.4(MFN2):c.1071G>C (p.Lys357Asn) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2275 | NM_014874.4(MFN2):c.493C>G (p.His165Asp) | MFN2 | Pathogenic | criteria provided, single submitter |
| 2276 | NM_014874.4(MFN2):c.280C>T (p.Arg94Trp) | MFN2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2278 | NM_014874.4(MFN2):c.1090C>T (p.Arg364Trp) | MFN2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2280 | NM_014874.4(MFN2):c.2119C>T (p.Arg707Trp) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2281 | NM_014874.4(MFN2):c.310C>T (p.Arg104Trp) | MFN2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 243057 | NM_014874.4(MFN2):c.730G>T (p.Val244Leu) | MFN2 | Pathogenic | criteria provided, single submitter |
| 243066 | NM_014874.4(MFN2):c.730G>A (p.Val244Met) | MFN2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2431040 | NM_014874.4(MFN2):c.705G>T (p.Gln235His) | MFN2 | Pathogenic | no assertion criteria provided |
| 245944 | NM_014874.4(MFN2):c.1091G>A (p.Arg364Gln) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 30738 | NM_014874.4(MFN2):c.1085C>T (p.Thr362Met) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 476772 | NM_014874.4(MFN2):c.326A>G (p.Lys109Arg) | MFN2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 11 · Orphanet: 9 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| MFN2 | Definitive | Autosomal recessive | Charcot-Marie-Tooth disease, axonal, autosomal recessive, type 2a2b; | 11 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| MFN2 | Orphanet:2398 | Multiple symmetric lipomatosis |
| MFN2 | Orphanet:64751 | Hereditary motor and sensory neuropathy type 5 |
| MFN2 | Orphanet:90118 | Severe early-onset axonal neuropathy due to MFN2 deficiency |
| MFN2 | Orphanet:90120 | Hereditary motor and sensory neuropathy type 6 |
| MFN2 | Orphanet:99947 | Autosomal dominant Charcot-Marie-Tooth disease type 2A2 |
| DHTKD1 | Orphanet:329258 | Autosomal dominant Charcot-Marie-Tooth disease type 2Q |
| DHTKD1 | Orphanet:79154 | 2-aminoadipic 2-oxoadipic aciduria |
| ATP1A1 | Orphanet:521414 | Autosomal dominant Charcot-Marie-Tooth disease type 2DD |
| ATP1A1 | Orphanet:564178 | Primary hypomagnesemia-refractory seizures-intellectual disability syndrome |
Cohort genes → proteins
3 cohort genes, 3 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 3 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| MFN2 | HGNC:16877 | ENSG00000116688 | O95140 | Mitofusin-2 | gencc,clinvar |
| DHTKD1 | HGNC:23537 | ENSG00000181192 | Q96HY7 | 2-oxoadipate dehydrogenase complex component E1 | clinvar |
| ATP1A1 | HGNC:799 | ENSG00000163399 | P05023 | Sodium/potassium-transporting ATPase subunit alpha-1 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| MFN2 | Mitofusin-2 | Mitochondrial outer membrane GTPase that mediates mitochondrial clustering and fusion. |
| DHTKD1 | 2-oxoadipate dehydrogenase complex component E1 | 2-oxoadipate dehydrogenase (E1a) component of the 2-oxoadipate dehydrogenase complex (OADHC). |
| ATP1A1 | Sodium/potassium-transporting ATPase subunit alpha-1 | This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. |
Protein-family classification
Druggable: 1 · Difficult: 1 · Unknown: 1 · Druggable fraction: 0.33
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Enzyme (other) | 1 | 4.0× | 0.482 |
| Transcription factor | 1 | 2.8× | 0.482 |
| Other/Unknown | 1 | 0.6× | 0.914 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| MFN2 | Other/Unknown | no | Fzo/mitofusin_HR2, Mitofusin_fam, P-loop_NTPase | |
| DHTKD1 | Enzyme (other) | yes | 1.2.1.105 | DH_E1, Transketolase-like_Pyr-bd, 2oxoglutarate_DH_E1 |
| ATP1A1 | Transcription factor | no | 7.2.2.3 | P_typ_ATPase, ATPase_P-typ_cation-transptr_N, P-type_ATPase_IIC |
Expression context
Cohort genes with no expression data: 0.
3 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 3 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| apex of heart | 1 |
| cardiac ventricle | 1 |
| heart left ventricle | 1 |
| liver | 1 |
| right lobe of liver | 1 |
| secondary oocyte | 1 |
| left lobe of thyroid gland | 1 |
| renal medulla | 1 |
| right lobe of thyroid gland | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| MFN2 | 297 | ubiquitous | marker | apex of heart, heart left ventricle, cardiac ventricle |
| DHTKD1 | 270 | ubiquitous | marker | liver, right lobe of liver, secondary oocyte |
| ATP1A1 | 305 | ubiquitous | marker | renal medulla, right lobe of thyroid gland, left lobe of thyroid gland |
Protein interactions among cohort
Intra-cohort edges: 0.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| MFN2 | 3,853 |
| ATP1A1 | 3,520 |
| DHTKD1 | 2,099 |
Structural data
PDB: 3 · AlphaFold-only: 0 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| ATP1A1 | P05023 | 13 |
| DHTKD1 | Q96HY7 | 8 |
| MFN2 | O95140 | 3 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 23. Enrichment computed across 3 evidence-associated genes (3 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 3 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| OADH complex synthesizes glutaryl-CoA from 2-OA | 1 | 1268.9× | 0.014 | DHTKD1 |
| Miro GTPase Cycle | 1 | 761.3× | 0.014 | MFN2 |
| RHOT2 GTPase cycle | 1 | 543.8× | 0.014 | MFN2 |
| Mitophagy | 1 | 346.1× | 0.017 | MFN2 |
| PINK1-PRKN Mediated Mitophagy | 1 | 119.0× | 0.039 | MFN2 |
| Selective autophagy | 1 | 92.8× | 0.041 | MFN2 |
| Ion transport by P-type ATPases | 1 | 69.2× | 0.042 | ATP1A1 |
| Ion homeostasis | 1 | 68.0× | 0.042 | ATP1A1 |
| Autophagy | 1 | 49.4× | 0.051 | MFN2 |
| Macroautophagy | 1 | 38.5× | 0.052 | MFN2 |
| Potential therapeutics for SARS | 1 | 38.1× | 0.052 | ATP1A1 |
| Cardiac conduction | 1 | 36.2× | 0.052 | ATP1A1 |
| Ion channel transport | 1 | 32.0× | 0.055 | ATP1A1 |
| Muscle contraction | 1 | 25.7× | 0.063 | ATP1A1 |
| Factors involved in megakaryocyte development and platelet production | 1 | 22.1× | 0.068 | MFN2 |
| SARS-CoV Infections | 1 | 18.5× | 0.076 | ATP1A1 |
| Hemostasis | 1 | 12.0× | 0.110 | MFN2 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 1 | 11.2× | 0.111 | MFN2 |
| Viral Infection Pathways | 1 | 10.3× | 0.114 | ATP1A1 |
| Transport of small molecules | 1 | 8.4× | 0.127 | ATP1A1 |
| Infectious disease | 1 | 8.3× | 0.127 | ATP1A1 |
| Disease | 1 | 4.4× | 0.222 | ATP1A1 |
| Signal Transduction | 1 | 3.4× | 0.267 | MFN2 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 3 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| negative regulation of glucocorticoid biosynthetic process | 1 | 5617.3× | 0.007 | ATP1A1 |
| positive regulation of striated muscle contraction | 1 | 2808.7× | 0.007 | ATP1A1 |
| negative regulation of heart contraction | 1 | 1404.3× | 0.007 | ATP1A1 |
| type 2 mitophagy | 1 | 1123.5× | 0.007 | MFN2 |
| establishment or maintenance of transmembrane electrochemical gradient | 1 | 936.2× | 0.007 | ATP1A1 |
| mitochondrial membrane organization | 1 | 802.5× | 0.007 | MFN2 |
| response to glycoside | 1 | 802.5× | 0.007 | ATP1A1 |
| positive regulation of heart contraction | 1 | 702.2× | 0.007 | ATP1A1 |
| positive regulation of vascular associated smooth muscle cell apoptotic process | 1 | 702.2× | 0.007 | MFN2 |
| mitochondrion localization | 1 | 561.7× | 0.007 | MFN2 |
| membrane repolarization during cardiac muscle cell action potential | 1 | 561.7× | 0.007 | ATP1A1 |
| osmosensory signaling pathway | 1 | 510.7× | 0.007 | ATP1A1 |
| cell communication by electrical coupling involved in cardiac conduction | 1 | 468.1× | 0.007 | ATP1A1 |
| relaxation of cardiac muscle | 1 | 432.1× | 0.007 | ATP1A1 |
| membrane repolarization | 1 | 432.1× | 0.007 | ATP1A1 |
| sodium ion export across plasma membrane | 1 | 351.1× | 0.007 | ATP1A1 |
| cellular response to steroid hormone stimulus | 1 | 351.1× | 0.007 | ATP1A1 |
| regulation of the force of heart contraction | 1 | 330.4× | 0.007 | ATP1A1 |
| intracellular potassium ion homeostasis | 1 | 330.4× | 0.007 | ATP1A1 |
| protein localization to phagophore assembly site | 1 | 330.4× | 0.007 | MFN2 |
| regulation of sodium ion transport | 1 | 312.1× | 0.007 | ATP1A1 |
| mitochondrial fusion | 1 | 280.9× | 0.007 | MFN2 |
| blastocyst formation | 1 | 255.3× | 0.007 | MFN2 |
| intracellular sodium ion homeostasis | 1 | 255.3× | 0.007 | ATP1A1 |
| camera-type eye morphogenesis | 1 | 255.3× | 0.007 | MFN2 |
| cardiac muscle cell action potential involved in contraction | 1 | 234.1× | 0.007 | ATP1A1 |
| negative regulation of Ras protein signal transduction | 1 | 224.7× | 0.007 | MFN2 |
| negative regulation of smooth muscle cell proliferation | 1 | 208.1× | 0.007 | MFN2 |
| obsolete protein targeting to mitochondrion | 1 | 193.7× | 0.008 | MFN2 |
| positive regulation of vascular associated smooth muscle cell proliferation | 1 | 144.0× | 0.010 | MFN2 |
Therapeutics
Drug target analysis
Approved (phase 4): 1 · Phase ≥3: 1 · Phased (≥1): 1 · Undrugged: 2
Druggability breadth: 2 of 3 evidence-associated genes (67%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| ATP1A1 | DIGOXIN |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| ATP1A1 | 5 | 4 |
| MFN2 | 0 | 0 |
| DHTKD1 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| DIGOXIN | 4 | ATP1A1 |
| OMEPRAZOLE | 4 | ATP1A1 |
| DIGITOXIN | 4 | ATP1A1 |
| LANSOPRAZOLE | 4 | ATP1A1 |
| ROSTAFUROXIN | 2 | ATP1A1 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 2.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| ATP1A1 | 50 | Binding:50 |
| MFN2 | 3 | Binding:3 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| DHTKD1 | 1.2.1.105 | 2-oxoglutarate dehydrogenase system |
| ATP1A1 | 7.2.2.3 | P-type Na+ transporter |
Pharmacogenomics
Cohort genes with a PharmGKB record: 3; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
5 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| DIGOXIN | 4 | ATP1A1 |
| OMEPRAZOLE | 4 | ATP1A1 |
| DIGITOXIN | 4 | ATP1A1 |
| LANSOPRAZOLE | 4 | ATP1A1 |
| ROSTAFUROXIN | 2 | ATP1A1 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 1 | ATP1A1 |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 1 | DHTKD1 |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 1 | MFN2 |
Undrugged target profiles
2 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| MFN2 | 3 | — |
| DHTKD1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 1.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT05902351 | Not specified | RECRUITING | Natural History Study for Charcot Marie Tooth Disease |