Charcot-Marie-Tooth disease type 3
diseaseOn this page
Also known as Charcot-Marie-Tooth disease, type 3CMT3dejerine-sottas diseaseDejerine-Sottas neuropathyDejerine-Sottas SyndromeDSNhereditary motor and sensory neuropathy 3hereditary motor and sensory neuropathy type 3hereditary motor and sensory neuropathy type IIIHMSN 3HMSN IIIHMSN3hypertrophic neuropathy of Dejerine-Sottashypertrophic neuropathy of infancy
Summary
Charcot-Marie-Tooth disease type 3 (MONDO:0007790) is a disease caused by PMP22 (GenCC Strong), with 6 cohort genes. The dominant Reactome pathway is EGR2 and SOX10-mediated initiation of Schwann cell myelination (5 cohort genes).
At a glance
- Prevalence: <1 / 1 000 000 (Worldwide) [Orphanet-validated]
- Causal gene: PMP22 (GenCC Strong)
- Cohort genes: 6
- ClinVar variants: 111
Clinical features
Epidemiology
Prevalence records
1 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Point prevalence | <1 / 1 000 000 | Worldwide | Validated |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | Charcot-Marie-Tooth disease type 3 |
| Mondo ID | MONDO:0007790 |
| OMIM | 145900 |
| Orphanet | 64748 |
| DOID | DOID:0050540 |
| NCIT | C133087 |
| SNOMED CT | 111499002 |
| UMLS | C0011195 |
| MedGen | 3710 |
| GARD | 0009204 |
| NORD | 1037 |
| Is cancer (heuristic) | no |
Also known as: Charcot-Marie-Tooth disease type 3 · Charcot-Marie-Tooth disease, type 3 · CMT3 · dejerine-sottas disease · Dejerine-Sottas neuropathy · Dejerine-Sottas Syndrome · Dejerine-Sottas syndrome · DSN · hereditary motor and sensory neuropathy 3 · hereditary motor and sensory neuropathy type 3 · hereditary motor and sensory neuropathy type III · HMSN 3 · HMSN III · HMSN3 · hypertrophic neuropathy of Dejerine-Sottas · hypertrophic neuropathy of infancy
Data availability: 111 ClinVar variants · 7 GenCC gene-disease records · 1 cell line.
Disease family
Classification path: disease › human disease › disease by body system or component › nervous system disorder › peripheral nervous system disorder › peripheral neuropathy › hereditary peripheral neuropathy › Charcot-Marie-Tooth disease › Charcot-Marie-Tooth disease type 3
Related subtypes (23): Charcot-Marie-Tooth disease, Guadalajara neuronal type, Charcot-Marie-Tooth disease with ptosis and parkinsonism, neuronopathy, distal hereditary motor, autosomal dominant 1, neuropathy, hereditary motor and sensory, type 6A, Charcot-Marie-Tooth disease, axonal, autosomal recessive, type 2a2b;, demyelinating hereditary motor and sensory neuropathy, intermediate Charcot-Marie-Tooth disease, Charcot-Marie-Tooth disease type 2, Charcot-Marie-Tooth disease type X, Charcot-Marie-Tooth disease type 4, Charcot-Marie-Tooth disease type 1, Charcot-Marie-Tooth disease, axonal, mitochondrial form, 1, Charcot-Marie-Tooth disease, axonal, type 2FF, Charcot-Marie-Tooth disease, axonal, Type 2HH, Charcot-Marie-Tooth disease, demyelinating, IIA 1I, Charcot-Marie-Tooth disease, demyelinating, IIA 1H, Charcot-Marie-Tooth disease, axonal, IIa 2II, Charcot-Marie-Tooth disease, demyelinating, type 1G, Charcot-Marie-Tooth disease, demyelinating, type 1J, Charcot-Marie-tooth disease, axonal, type 2JJ, Charcot-Marie-Tooth disease, axonal, type 2KK, Charcot-Marie-Tooth disease, axonal, type 2LL, charcot-marie-tooth disease, axonal, type 2MM
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
111 retrieved; paginated sample, class counts are floors:
45 uncertain significance, 21 pathogenic, 14 conflicting classifications of pathogenicity, 11 pathogenic/likely pathogenic, 9 likely pathogenic, 7 benign/likely benign, 4 benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1525978 | NM_000399.5(EGR2):c.1232A>G (p.Asp411Gly) | EGR2 | Pathogenic | criteria provided, single submitter |
| 16752 | NM_000399.5(EGR2):c.1075C>T (p.Arg359Trp) | EGR2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 16753 | NM_000399.5(EGR2):c.1234G>A (p.Glu412Lys) | EGR2 | Pathogenic | criteria provided, single submitter |
| 1685761 | NM_000399.5(EGR2):c.1152C>A (p.His384Gln) | EGR2 | Pathogenic | criteria provided, single submitter |
| 10451 | NM_000166.6(GJB1):c.407T>C (p.Val136Ala) | GJB1 | Pathogenic | no assertion criteria provided |
| 14169 | NM_000530.8(MPZ):c.188C>G (p.Ser63Cys) | MPZ | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 14170 | NM_000530.8(MPZ):c.499G>C (p.Gly167Arg) | MPZ | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 14181 | NM_000530.8(MPZ):c.371C>T (p.Thr124Met) | MPZ | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 14191 | NM_000530.8(MPZ):c.434A>C (p.Tyr145Ser) | MPZ | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 246122 | NM_000530.8(MPZ):c.129_136del (p.Ser44fs) | MPZ | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 41014 | NM_000530.8(MPZ):c.89T>C (p.Ile30Thr) | MPZ | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 462797 | NM_000530.8(MPZ):c.397C>A (p.Pro133Thr) | MPZ | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 488548 | NM_000530.8(MPZ):c.558del (p.Arg186fs) | MPZ | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 531694 | NM_000530.8(MPZ):c.560_563dup (p.Ala189fs) | MPZ | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 577671 | NM_000530.8(MPZ):c.411C>T (p.Gly137=) | MPZ | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 637350 | NM_000530.8(MPZ):c.380G>A (p.Cys127Tyr) | MPZ | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 217238 | NM_000304.4(PMP22):c.434del (p.Leu145fs) | PMP22 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 234605 | NM_000304.4(PMP22):c.447C>A (p.Ser149Arg) | PMP22 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 245805 | NM_000304.4(PMP22):c.449G>A (p.Gly150Asp) | PMP22 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 384327 | NM_000304.4(PMP22):c.448G>C (p.Gly150Arg) | PMP22 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 433198 | NM_000304.4(PMP22):c.449G>T (p.Gly150Val) | PMP22 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 637384 | NM_000304.4(PMP22):c.214T>C (p.Ser72Pro) | PMP22 | Pathogenic | criteria provided, single submitter |
| 637820 | NM_000304.4(PMP22):c.298G>A (p.Gly100Arg) | PMP22 | Pathogenic | criteria provided, single submitter |
| 637822 | NM_000304.4(PMP22):c.235T>C (p.Ser79Pro) | PMP22 | Pathogenic | criteria provided, single submitter |
| 637843 | NM_000304.4(PMP22):c.215C>G (p.Ser72Trp) | PMP22 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 8434 | NM_000304.4(PMP22):c.36C>A (p.His12Gln) | PMP22 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1686102 | NM_181882.3(PRX):c.1552_1558del (p.Pro518fs) | PRX | Pathogenic | criteria provided, single submitter |
| 245870 | NM_181882.3(PRX):c.1174C>T (p.Arg392Ter) | PRX | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 433553 | NM_181882.3(PRX):c.1012del (p.Ala338fs) | PRX | Pathogenic | no assertion criteria provided |
| 4794 | NM_181882.3(PRX):c.3208C>T (p.Arg1070Ter) | PRX | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 56 · Orphanet: 21 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| EGR2 | Definitive | Autosomal recessive | Charcot-Marie-Tooth disease type 4E | 10 |
| MPZ | Definitive | Autosomal dominant | Charcot-Marie-Tooth disease | 11 |
| PMP22 | Definitive | Autosomal dominant | Charcot-Marie-Tooth disease type 1A | 21 |
| PRDX6 | Definitive | Autosomal recessive | Charcot-Marie-Tooth disease type 4 | 7 |
| PRX | Definitive | Autosomal recessive | Charcot-Marie-Tooth disease type 4 | 7 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| PRX | Orphanet:64748 | Dejerine-Sottas syndrome |
| PRX | Orphanet:99952 | Charcot-Marie-Tooth disease type 4F |
| EGR2 | Orphanet:101084 | Charcot-Marie-Tooth disease type 1D |
| EGR2 | Orphanet:64748 | Dejerine-Sottas syndrome |
| EGR2 | Orphanet:99951 | Charcot-Marie-Tooth disease type 4E |
| MPZ | Orphanet:100046 | Autosomal dominant intermediate Charcot-Marie-Tooth disease type D |
| MPZ | Orphanet:101082 | Charcot-Marie-Tooth disease type 1B |
| MPZ | Orphanet:3115 | Roussy-Lévy syndrome |
| MPZ | Orphanet:324585 | Autosomal dominant intermediate Charcot-Marie-Tooth disease with neuropathic pain |
| MPZ | Orphanet:538574 | Palmoplantar keratoderma-hereditary motor and sensory neuropathy syndrome |
| MPZ | Orphanet:64748 | Dejerine-Sottas syndrome |
| MPZ | Orphanet:99942 | Autosomal dominant Charcot-Marie-Tooth disease type 2I |
| MPZ | Orphanet:99943 | Autosomal dominant Charcot-Marie-Tooth disease type 2J |
| PMP22 | Orphanet:101081 | Charcot-Marie-Tooth disease type 1A |
| PMP22 | Orphanet:3115 | Roussy-Lévy syndrome |
| PMP22 | Orphanet:640 | Hereditary neuropathy with liability to pressure palsies |
| PMP22 | Orphanet:64748 | Dejerine-Sottas syndrome |
| PMP22 | Orphanet:90658 | Charcot-Marie-Tooth disease type 1E |
| PMP22 | Orphanet:98916 | Acute inflammatory demyelinating polyradiculoneuropathy |
| GJB1 | Orphanet:101075 | X-linked Charcot-Marie-Tooth disease type 1 |
| GJB1 | Orphanet:1175 | X-linked progressive cerebellar ataxia |
Cohort genes → proteins
6 cohort genes, 6 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 6 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| PRX | HGNC:13797 | ENSG00000105227 | Q9BXM0 | Periaxin | gencc,clinvar |
| PRDX6 | HGNC:16753 | ENSG00000117592 | P30041 | Peroxiredoxin-6 | gencc,clinvar |
| EGR2 | HGNC:3239 | ENSG00000122877 | P11161 | E3 SUMO-protein ligase EGR2 | gencc,clinvar |
| MPZ | HGNC:7225 | ENSG00000158887 | P25189 | Myelin protein P0 | gencc,clinvar |
| PMP22 | HGNC:9118 | ENSG00000109099 | Q01453 | Peripheral myelin protein 22 | gencc,clinvar |
| GJB1 | HGNC:4283 | ENSG00000169562 | P08034 | Gap junction beta-1 protein | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| PRX | Periaxin | Scaffolding protein that functions as part of a dystroglycan complex in Schwann cells, and as part of EZR and AHNAK-containing complexes in eye lens fiber cells. |
| PRDX6 | Peroxiredoxin-6 | Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. |
| EGR2 | E3 SUMO-protein ligase EGR2 | Sequence-specific DNA-binding transcription factor. |
| MPZ | Myelin protein P0 | Is an adhesion molecule necessary for normal myelination in the peripheral nervous system. |
| PMP22 | Peripheral myelin protein 22 | Might be involved in growth regulation, and in myelinization in the peripheral nervous system. |
| GJB1 | Gap junction beta-1 protein | One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. |
Protein-family classification
Druggable: 2 · Difficult: 2 · Unknown: 2 · Druggable fraction: 0.33
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Antibody/Immunoglobulin | 1 | 4.9× | 0.674 |
| Scaffold/PPI | 1 | 2.9× | 0.674 |
| Enzyme (other) | 1 | 2.0× | 0.674 |
| Transcription factor | 1 | 1.4× | 0.674 |
| Other/Unknown | 2 | 0.6× | 0.936 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| PRX | Scaffold/PPI | no | PDZ, PDZ_sf, Myelin_sheath_structural | |
| PRDX6 | Enzyme (other) | yes | 1.11.1.27 | AhpC/TSA, Thioredoxin_domain, Peroxiredoxin_C |
| EGR2 | Transcription factor | no | Znf_C2H2_type, EGR_N, Znf_C2H2_sf | |
| MPZ | Antibody/Immunoglobulin | yes | Myelin_P0-rel, Ig_sub, Ig-like_dom | |
| PMP22 | Other/Unknown | no | PMP22, PMP22/EMP/MP20/Claudin, PMP22_EMP_MP20 | |
| GJB1 | Other/Unknown | no | Connexin, Connexin32, Connexin_N |
Expression context
Cohort genes with no expression data: 0.
6 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 6 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| olfactory bulb | 3 |
| sural nerve | 2 |
| trigeminal ganglion | 2 |
| tibial nerve | 2 |
| corpus epididymis | 1 |
| gastrocnemius | 1 |
| mucosa of stomach | 1 |
| gall bladder | 1 |
| granulocyte | 1 |
| dorsal root ganglion | 1 |
| C1 segment of cervical spinal cord | 1 |
| liver | 1 |
| right lobe of liver | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| PRX | 258 | ubiquitous | marker | olfactory bulb, trigeminal ganglion, sural nerve |
| PRDX6 | 295 | ubiquitous | marker | corpus epididymis, gastrocnemius, mucosa of stomach |
| EGR2 | 143 | ubiquitous | marker | gall bladder, tibial nerve, granulocyte |
| MPZ | 178 | ubiquitous | marker | tibial nerve, sural nerve, olfactory bulb |
| PMP22 | 294 | ubiquitous | marker | olfactory bulb, trigeminal ganglion, dorsal root ganglion |
| GJB1 | 207 | broad | marker | right lobe of liver, C1 segment of cervical spinal cord, liver |
Protein interactions among cohort
Intra-cohort edges: 7.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| PRDX6 | 4,106 |
| EGR2 | 3,269 |
| PRX | 1,569 |
| GJB1 | 1,494 |
| PMP22 | 647 |
| MPZ | 25 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| EGR2 | GJB1 | string_interaction |
| EGR2 | PMP22 | string_interaction |
| EGR2 | PRX | string_interaction |
| GJB1 | PMP22 | string_interaction |
| GJB1 | PRX | string_interaction |
| MPZ | PMP22 | biogrid_interaction |
| PMP22 | PRX | string_interaction |
Structural data
PDB: 4 · AlphaFold-only: 2 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| GJB1 | P08034 | 15 |
| PRDX6 | P30041 | 3 |
| MPZ | P25189 | 2 |
| PRX | Q9BXM0 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| PMP22 | Q01453 | 89.87 |
| EGR2 | P11161 | 49.02 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 11. Enrichment computed across 6 evidence-associated genes (6 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 6 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| EGR2 and SOX10-mediated initiation of Schwann cell myelination | 5 | 307.0× | 7e-12 | PRX, EGR2, MPZ, PMP22, GJB1 |
| Oligomerization of connexins into connexons | 1 | 634.4× | 0.006 | GJB1 |
| Transport of connexins along the secretory pathway | 1 | 634.4× | 0.006 | GJB1 |
| Detoxification of Reactive Oxygen Species | 1 | 50.1× | 0.038 | PRDX6 |
| Gap junction assembly | 1 | 48.8× | 0.038 | GJB1 |
| NGF-stimulated transcription | 1 | 47.6× | 0.038 | EGR2 |
| Transcriptional regulation of white adipocyte differentiation | 1 | 21.6× | 0.071 | EGR2 |
| Activation of anterior HOX genes in hindbrain development during early embryogenesis | 1 | 15.2× | 0.088 | EGR2 |
| Nervous system development | 1 | 7.2× | 0.161 | MPZ |
| Neutrophil degranulation | 1 | 3.9× | 0.257 | PRDX6 |
| Developmental Biology | 1 | 2.4× | 0.350 | MPZ |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 6 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| peripheral nervous system development | 2 | 193.7× | 0.002 | EGR2, PMP22 |
| rhombomere 3 structural organization | 1 | 2808.7× | 0.003 | EGR2 |
| rhombomere 3 formation | 1 | 2808.7× | 0.003 | EGR2 |
| rhombomere 5 structural organization | 1 | 2808.7× | 0.003 | EGR2 |
| rhombomere 5 formation | 1 | 2808.7× | 0.003 | EGR2 |
| myelination | 2 | 83.8× | 0.003 | EGR2, MPZ |
| rhythmic behavior | 1 | 1404.3× | 0.004 | EGR2 |
| positive regulation of Schwann cell differentiation | 1 | 1404.3× | 0.004 | EGR2 |
| cell aggregation | 1 | 1404.3× | 0.004 | MPZ |
| brain segmentation | 1 | 936.2× | 0.005 | EGR2 |
| axon ensheathment | 1 | 468.1× | 0.008 | PRX |
| Schwann cell differentiation | 1 | 401.2× | 0.008 | EGR2 |
| gap junction assembly | 1 | 351.1× | 0.008 | GJB1 |
| facial nerve structural organization | 1 | 312.1× | 0.008 | EGR2 |
| myelin assembly | 1 | 312.1× | 0.008 | PMP22 |
| cellular oxidant detoxification | 1 | 312.1× | 0.008 | PRDX6 |
| chemical synaptic transmission | 2 | 25.8× | 0.008 | MPZ, PMP22 |
| bleb assembly | 1 | 255.3× | 0.009 | PMP22 |
| peripheral nervous system myelin maintenance | 1 | 255.3× | 0.009 | PRX |
| regulation of ossification | 1 | 200.6× | 0.011 | EGR2 |
| obsolete cell-cell adhesion via plasma-membrane adhesion molecules | 1 | 187.2× | 0.011 | MPZ |
| glycerophospholipid catabolic process | 1 | 175.5× | 0.012 | PRDX6 |
| positive regulation of myelination | 1 | 127.7× | 0.015 | EGR2 |
| motor neuron axon guidance | 1 | 117.0× | 0.016 | EGR2 |
| hydrogen peroxide catabolic process | 1 | 112.3× | 0.016 | PRDX6 |
| aorta development | 1 | 93.6× | 0.018 | EGR2 |
| positive regulation of mRNA splicing, via spliceosome | 1 | 90.6× | 0.018 | PRDX6 |
| protein export from nucleus | 1 | 85.1× | 0.019 | EGR2 |
| skeletal muscle cell differentiation | 1 | 57.3× | 0.026 | EGR2 |
| cell redox homeostasis | 1 | 57.3× | 0.026 | PRDX6 |
Therapeutics
Drug target analysis
Approved (phase 4): 1 · Phase ≥3: 1 · Phased (≥1): 1 · Undrugged: 5
Druggability breadth: 3 of 6 evidence-associated genes (50%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| PMP22 | PROGESTERONE |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| PMP22 | 213 | 4 |
| PRX | 0 | 0 |
| PRDX6 | 0 | 0 |
| EGR2 | 0 | 0 |
| MPZ | 0 | 0 |
| GJB1 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| PROGESTERONE | 4 | PMP22 |
| CLOTRIMAZOLE | 4 | PMP22 |
| OXAPROZIN | 4 | PMP22 |
| SALMETEROL XINAFOATE | 4 | PMP22 |
| AMIODARONE HYDROCHLORIDE | 4 | PMP22 |
| TRIHEXYPHENIDYL HYDROCHLORIDE | 4 | PMP22 |
| AMOXAPINE | 4 | PMP22 |
| RALOXIFENE HYDROCHLORIDE | 4 | PMP22 |
| IDARUBICIN | 4 | PMP22 |
| OXYBUTYNIN CHLORIDE | 4 | PMP22 |
| PINACIDIL ANHYDROUS | 4 | PMP22 |
| NICARDIPINE HYDROCHLORIDE | 4 | PMP22 |
| PILOCARPINE HYDROCHLORIDE | 4 | PMP22 |
| PROTRIPTYLINE HYDROCHLORIDE | 4 | PMP22 |
| BENZTROPINE MESYLATE | 4 | PMP22 |
| BUSPIRONE HYDROCHLORIDE | 4 | PMP22 |
| DOBUTAMINE HYDROCHLORIDE | 4 | PMP22 |
| PROMAZINE HYDROCHLORIDE | 4 | PMP22 |
| DICYCLOMINE HYDROCHLORIDE | 4 | PMP22 |
| GUANFACINE HYDROCHLORIDE | 4 | PMP22 |
| HYDROCORTISONE SODIUM SUCCINATE | 4 | PMP22 |
| BROMOCRIPTINE MESYLATE | 4 | PMP22 |
| DIHYDROERGOTAMINE MESYLATE | 4 | PMP22 |
| DOXAZOSIN MESYLATE | 4 | PMP22 |
| CYCLOBENZAPRINE HYDROCHLORIDE | 4 | PMP22 |
| DEXBROMPHENIRAMINE MALEATE | 4 | PMP22 |
| CLOMIPRAMINE HYDROCHLORIDE | 4 | PMP22 |
| CHLORMEZANONE | 4 | PMP22 |
| PROMETHAZINE HYDROCHLORIDE | 4 | PMP22 |
| CITALOPRAM HYDROBROMIDE | 4 | PMP22 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 1.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| PRDX6 | 15 | Binding:15 |
| PMP22 | 1 | Functional:1 |
| GJB1 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| PRDX6 | 1.11.1.27, 2.3.1.23, 3.1.1.4 | glutathione-dependent peroxiredoxin, 1-acylglycerophosphocholine O-acyltransferase, phospholipase A2 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 6; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| PROGESTERONE | 4 | PMP22 |
| CLOTRIMAZOLE | 4 | PMP22 |
| OXAPROZIN | 4 | PMP22 |
| SALMETEROL XINAFOATE | 4 | PMP22 |
| AMIODARONE HYDROCHLORIDE | 4 | PMP22 |
| TRIHEXYPHENIDYL HYDROCHLORIDE | 4 | PMP22 |
| AMOXAPINE | 4 | PMP22 |
| RALOXIFENE HYDROCHLORIDE | 4 | PMP22 |
| IDARUBICIN | 4 | PMP22 |
| OXYBUTYNIN CHLORIDE | 4 | PMP22 |
| PINACIDIL ANHYDROUS | 4 | PMP22 |
| NICARDIPINE HYDROCHLORIDE | 4 | PMP22 |
| PILOCARPINE HYDROCHLORIDE | 4 | PMP22 |
| PROTRIPTYLINE HYDROCHLORIDE | 4 | PMP22 |
| BENZTROPINE MESYLATE | 4 | PMP22 |
| BUSPIRONE HYDROCHLORIDE | 4 | PMP22 |
| DOBUTAMINE HYDROCHLORIDE | 4 | PMP22 |
| PROMAZINE HYDROCHLORIDE | 4 | PMP22 |
| DICYCLOMINE HYDROCHLORIDE | 4 | PMP22 |
| GUANFACINE HYDROCHLORIDE | 4 | PMP22 |
| HYDROCORTISONE SODIUM SUCCINATE | 4 | PMP22 |
| BROMOCRIPTINE MESYLATE | 4 | PMP22 |
| DIHYDROERGOTAMINE MESYLATE | 4 | PMP22 |
| DOXAZOSIN MESYLATE | 4 | PMP22 |
| CYCLOBENZAPRINE HYDROCHLORIDE | 4 | PMP22 |
| DEXBROMPHENIRAMINE MALEATE | 4 | PMP22 |
| CLOMIPRAMINE HYDROCHLORIDE | 4 | PMP22 |
| CHLORMEZANONE | 4 | PMP22 |
| PROMETHAZINE HYDROCHLORIDE | 4 | PMP22 |
| CITALOPRAM HYDROBROMIDE | 4 | PMP22 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 1 | PMP22 |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 2 | PRDX6, MPZ |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 3 | PRX, EGR2, GJB1 |
Undrugged target profiles
5 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| GJB1 | 1 | PMP22 |
| PRX | 0 | — |
| PRDX6 | 15 | — |
| EGR2 | 0 | — |
| MPZ | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.