Common variable immunodeficiency
diseaseOn this page
Also known as common variable hypogamma-globulinemiaCommon Variable Immune Deficiencyhypogamma-globulinemia, acquiredImmunoglobulin deficiency, late-onsetprimary antibody deficiencyprimary hypogammaglobulinemiasecondary hypogammaglobulinemia
Summary
Common variable immunodeficiency (MONDO:0015517) is a disease (an umbrella term covering 16 Mondo subtypes) with 65 cohort genes (52 GWAS associations across 3 studies) and 42 clinical trials. The dominant Reactome pathway is Interleukin-23 signaling (4 cohort genes). Top therapeutic interventions include human immunoglobulin g, dextrose, and leniolisib.
At a glance
- Umbrella term: 16 Mondo subtypes
- Cohort genes: 65
- GWAS associations: 52
- ClinVar variants: 294
- Clinical trials: 42
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | common variable immunodeficiency |
| Mondo ID | MONDO:0015517 |
| MeSH | D017074 |
| OMIM | 607594 |
| Orphanet | 1572 |
| DOID | DOID:12177 |
| ICD-10-CM | D83 |
| ICD-11 | 1908371517 |
| NCIT | C26725 |
| SNOMED CT | 23238000 |
| UMLS | C0009447 |
| MedGen | 40407 |
| GARD | 0006140 |
| MedDRA | 10021449 |
| NORD | 990 |
| Is cancer (heuristic) | no |
Also known as: common variable hypogamma-globulinemia · Common Variable Immune Deficiency · common variable immune deficiency · hypogamma-globulinemia, acquired · Immunoglobulin deficiency, late-onset · primary antibody deficiency · primary hypogammaglobulinemia · secondary hypogammaglobulinemia
Data availability: 294 ClinVar variants · 52 GWAS associations (3 studies) · 15 GenCC gene-disease records · 23 cell lines.
Disease family
An umbrella term covering 16 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › syndromic disease › syndromic agammaglobulinemia › common variable immunodeficiency
Related subtypes (2): transient hypogammaglobulinemia, agammaglobulinemia-microcephaly-craniosynostosis-severe dermatitis syndrome
Subtypes (16): immune deficiency, familial variable, immunodeficiency, common variable, 2, immunodeficiency, common variable, 1, immunodeficiency, common variable, 3, immunodeficiency, common variable, 4, immunodeficiency, common variable, 5, immunodeficiency, common variable, 6, immunodeficiency, common variable, 7, combined immunodeficiency due to LRBA deficiency, immunodeficiency, common variable, 10, IL21-related infantile inflammatory bowel disease, immunodeficiency, common variable, 12, pancytopenia due to IKZF1 mutations, immunodeficiency, common variable, 14, immunodeficiency, common variable, due to APRIL deficiency, immunodeficiency, common variable, 15
Genetics & variants
GWAS landscape
52 GWAS associations across 3 studies. Top hits map to 38 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs1049225 | 5e-16 | HLA-DQB1-AS1, HLA-DQB1 | A | 0.56 |
| rs11580078 | 8e-11 | IL23R, C1orf141 | G | |
| rs7725052 | 8e-11 | RNU1-150P - TTC33 | C | |
| rs6679677 | 8e-11 | PHTF1 - RSBN1 | A | |
| rs10822050 | 8e-11 | LINC02929 - ALDH7A1P4 | C | |
| rs17885785 | 8e-11 | INS-IGF2, IGF2, IGF2-AS | T | |
| rs72743477 | 8e-11 | SMAD3 | G | |
| rs117372389 | 8e-11 | NKD1 | T | |
| rs2066363 | 8e-11 | ADGRL2 | C | |
| rs7660520 | 8e-11 | TENM3 - DCTD | A | |
| rs7100025 | 8e-11 | LINC00993 | G | |
| rs36001488 | 8e-11 | ATG16L1 | C | |
| rs4625 | 8e-11 | BSN-DT, DAG1 | G | |
| rs1332099 | 9e-11 | NKX2-3 - SLC25A28 | T | |
| rs7731626 | 1e-10 | ANKRD55 | A | |
| rs755374 | 2e-10 | IL12B-AS1 | T | |
| rs17466626 | 3e-10 | LRRK2 | G | |
| rs11741255 | 2e-09 | IRF1, CARINH | A | |
| rs17806056 | 2e-09 | CLEC16A | A | 0.66 |
| rs1689510 | 4e-09 | SUOX | C | |
| rs12598357 | 4e-09 | SBK1 - NPIPB6 | G | |
| rs706778 | 6e-09 | IL2RA | T | |
| rs77150043 | 6e-09 | ADCY7 | T | |
| rs4246905 | 1e-08 | TNFSF15 | T | |
| rs1250563 | 1e-08 | ZMIZ1 | C | |
| rs2807264 | 1e-08 | RNU6-320P - LINC00892 | C | |
| rs62324212 | 3e-08 | IL21-AS1 | A | |
| rs11145763 | 3e-08 | CARD9 | C | |
| rs602662 | 5e-08 | FUT2 | G | |
| rs2836882 | 5e-08 | LINC02940 - RPL23AP12 | A |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST90301675 | Li J | 2015 | 778 | 10,999 | Association of CLEC16A with human common variable immunodeficiency disorder and role in murine B cells. |
| GCST001039 | Orange JS | 2011 | 179 | 1,917 | Genome-wide association identifies diverse causes of common variable immunodeficiency. |
| GCST003097 | Li YR | 2015 | 97 | 10,718 | Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 1 |
| Tier 2: splice/UTR | 4 |
| Tier 3: regulatory | 1 |
| Tier 4: intronic/intergenic | 44 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 46 |
| low_freq (0.01-0.05) | 4 |
| rare (<0.01) | 0 |
| unknown | 0 |
Functional consequences
| Consequence | Count |
|---|---|
| intron_variant | 29 |
| intergenic_variant | 15 |
| 3_prime_UTR_variant | 3 |
| missense_variant | 1 |
| regulatory_region_variant | 1 |
| splice_region_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| rs1049225 | 6 | 32659970 | A>C,G,T | 0.26 | 3_prime_UTR_variant | HLA-DQB1-AS1, HLA-DQB1 | 5e-16 | Tier 2: splice/UTR |
| rs11580078 | 1 | 67203951 | C>A,G,T | 0.43 | intron_variant | IL23R, C1orf141 | 8e-11 | Tier 4: intronic/intergenic |
| rs7725052 | 5 | 40487168 | C>T | 0.43 | intron_variant | RNU1-150P - TTC33 | 8e-11 | Tier 4: intronic/intergenic |
| rs6679677 | 1 | 113761186 | C>A,T | 0.09 | intergenic_variant | PHTF1 - RSBN1 | 8e-11 | Tier 4: intronic/intergenic |
| rs10822050 | 10 | 62679011 | T>C,G | 0.39 | intergenic_variant | LINC02929 - ALDH7A1P4 | 8e-11 | Tier 4: intronic/intergenic |
| rs17885785 | 11 | 2146620 | C>T | 0.2 | intron_variant | INS-IGF2, IGF2, IGF2-AS | 8e-11 | Tier 4: intronic/intergenic |
| rs72743477 | 15 | 67171953 | A>C,G,T | 0.21 | intron_variant | SMAD3 | 8e-11 | Tier 4: intronic/intergenic |
| rs117372389 | 16 | 50634166 | G>T | 0.02 | 3_prime_UTR_variant | NKD1 | 8e-11 | Tier 2: splice/UTR |
| rs2066363 | 1 | 81771892 | C>A,T | 0.34 | intron_variant | ADGRL2 | 8e-11 | Tier 4: intronic/intergenic |
| rs7660520 | 4 | 182824168 | G>A,C | 0.26 | intergenic_variant | TENM3 - DCTD | 8e-11 | Tier 4: intronic/intergenic |
| rs7100025 | 10 | 37303610 | G>A | 0.34 | intron_variant | LINC00993 | 8e-11 | Tier 4: intronic/intergenic |
| rs36001488 | 2 | 233276621 | C>G,T | 0.48 | intron_variant | ATG16L1 | 8e-11 | Tier 4: intronic/intergenic |
| rs4625 | 3 | 49534707 | A>G | 0.31 | 3_prime_UTR_variant | BSN-DT, DAG1 | 8e-11 | Tier 2: splice/UTR |
| rs1332099 | 10 | 99538694 | T>A,C,G | 0.46 | intergenic_variant | NKX2-3 - SLC25A28 | 9e-11 | Tier 4: intronic/intergenic |
| rs7731626 | 5 | 56148856 | G>A,C | 0.39 | intron_variant | ANKRD55 | 1e-10 | Tier 4: intronic/intergenic |
| rs755374 | 5 | 159402286 | C>A,G,T | 0.32 | intergenic_variant | IL12B-AS1 | 2e-10 | Tier 4: intronic/intergenic |
| rs17466626 | 12 | 40366829 | A>G | 0.02 | intron_variant | LRRK2 | 3e-10 | Tier 4: intronic/intergenic |
| rs11741255 | 5 | 132475490 | G>A | 0.42 | intron_variant | IRF1, CARINH | 2e-09 | Tier 4: intronic/intergenic |
| rs17806056 | 16 | 11098642 | T>A | 0.23 | intron_variant | CLEC16A | 2e-09 | Tier 4: intronic/intergenic |
| rs1689510 | 12 | 56002984 | G>A,C | 0.31 | intron_variant | SUOX | 4e-09 | Tier 4: intronic/intergenic |
| rs12598357 | 16 | 28329624 | A>G,T | 0.39 | intergenic_variant | SBK1 - NPIPB6 | 4e-09 | Tier 4: intronic/intergenic |
| rs706778 | 10 | 6056986 | C>G,T | 0.41 | intron_variant | IL2RA | 6e-09 | Tier 4: intronic/intergenic |
| rs77150043 | 16 | 50270338 | C>T | 0.23 | intron_variant | ADCY7 | 6e-09 | Tier 4: intronic/intergenic |
| rs4246905 | 9 | 114790969 | T>A,C | 0.28 | intron_variant | TNFSF15 | 1e-08 | Tier 4: intronic/intergenic |
| rs1250563 | 10 | 79287626 | G>C | 0.29 | intron_variant | ZMIZ1 | 1e-08 | Tier 4: intronic/intergenic |
| rs2807264 | X | 136583619 | C>A,G,T | 0.21 | intergenic_variant | RNU6-320P - LINC00892 | 1e-08 | Tier 4: intronic/intergenic |
| rs62324212 | 4 | 122639784 | C>A,G | 0.42 | intron_variant | IL21-AS1 | 3e-08 | Tier 4: intronic/intergenic |
| rs11145763 | 9 | 136369144 | A>C,G,T | 0.4 | intron_variant | CARD9 | 3e-08 | Tier 4: intronic/intergenic |
| rs602662 | 19 | 48703728 | G>A | 0.49 | missense_variant | FUT2 | 5e-08 | Tier 1: coding |
| rs2836882 | 21 | 39094644 | G>A | 0.27 | regulatory_region_variant | LINC02940 - RPL23AP12 | 5e-08 | Tier 3: regulatory |
ClinVar germline variants
294 retrieved; paginated sample, class counts are floors:
153 uncertain significance, 105 likely benign, 10 benign, 10 pathogenic, 5 conflicting classifications of pathogenicity, 4 benign/likely benign, 3 pathogenic/likely pathogenic, 3 likely pathogenic, 1 conflicting classifications of pathogenicity; risk factor
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 636694 | NM_003998.4(NFKB1):c.830dup (p.Lys278fs) | NFKB1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 827719 | NM_003998.4(NFKB1):c.260T>G (p.Ile87Ser) | NFKB1 | Pathogenic | criteria provided, single submitter |
| 827720 | NM_003998.4(NFKB1):c.293T>A (p.Val98Asp) | NFKB1 | Pathogenic | criteria provided, single submitter |
| 827721 | NM_003998.4(NFKB1):c.843C>G (p.Ile281Met) | NFKB1 | Pathogenic | criteria provided, single submitter |
| 827723 | NM_003998.4(NFKB1):c.1423del (p.Ala475fs) | NFKB1 | Pathogenic | criteria provided, single submitter |
| 827726 | NM_003998.4(NFKB1):c.850C>T (p.Arg284Ter) | NFKB1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 827830 | Single allele | NFKB1 | Pathogenic | criteria provided, single submitter |
| 827831 | Single allele | NFKB1 | Pathogenic | criteria provided, single submitter |
| 65385 | NM_001322934.2(NFKB2):c.2557C>T (p.Arg853Ter) | NFKB2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 13138 | NM_000536.4(RAG2):c.1352G>C (p.Gly451Ala) | RAG2 | Pathogenic | reviewed by expert panel |
| 827734 | NM_000536.4(RAG2):c.629T>C (p.Ile210Thr) | RAG2 | Pathogenic | criteria provided, single submitter |
| 203368 | NM_012452.3(TNFRSF13B):c.492C>G (p.Tyr164Ter) | TNFRSF13B | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 942527 | NM_012452.3(TNFRSF13B):c.61+2T>A | TNFRSF13B | Pathogenic | criteria provided, single submitter |
| 2574621 | NM_000061.3(BTK):c.1787T>C (p.Met596Thr) | BTK | Likely pathogenic | criteria provided, single submitter |
| 633147 | NM_000074.3(CD40LG):c.288+1G>A | CD40LG | Likely pathogenic | criteria provided, single submitter |
| 2827689 | NM_003998.4(NFKB1):c.1753-1G>C | NFKB1 | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 5302 | NM_012452.3(TNFRSF13B):c.310T>C (p.Cys104Arg) | TNFRSF13B | Conflicting classifications of pathogenicity; risk factor | criteria provided, conflicting classifications |
| 5303 | NM_012452.3(TNFRSF13B):c.542C>A (p.Ala181Glu) | TNFRSF13B | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 618436 | NM_012452.3(TNFRSF13B):c.260T>A (p.Ile87Asn) | TNFRSF13B | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 624092 | NM_003809.3(TNFSF12):c.674G>A (p.Arg225Gln) | TNFSF12 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 827747 | NM_020458.4(TTC7A):c.1802+3G>C | TTC7A | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 827752 | NM_020458.4(TTC7A):c.793C>T (p.Arg265Trp) | TTC7A | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 2424768 | NC_000017.10:g.(?7123304)(7606804_?)del | ACADVL | Uncertain significance | criteria provided, single submitter |
| 827696 | NM_000074.3(CD40LG):c.98T>A (p.Ile33Asn) | CD40LG | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 1414300 | NM_003809.3(TNFSF12):c.68C>T (p.Pro23Leu) | LOC130060153 | Uncertain significance | criteria provided, single submitter |
| 1435998 | NM_003809.3(TNFSF12):c.88C>G (p.Leu30Val) | LOC130060153 | Uncertain significance | criteria provided, single submitter |
| 1436026 | NM_003809.3(TNFSF12):c.46C>A (p.Pro16Thr) | LOC130060153 | Uncertain significance | criteria provided, single submitter |
| 1443273 | NM_003809.3(TNFSF12):c.26G>A (p.Arg9Gln) | LOC130060153 | Uncertain significance | criteria provided, single submitter |
| 1495617 | NM_003809.3(TNFSF12):c.35G>C (p.Arg12Pro) | LOC130060153 | Uncertain significance | criteria provided, single submitter |
| 1524145 | NM_003809.3(TNFSF12):c.55G>A (p.Ala19Thr) | LOC130060153 | Uncertain significance | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 52 · Orphanet: 80 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 3
Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)
| Gene | HGNC | Evidence routes |
|---|---|---|
| CD40LG | CD40LG | GWAS, Orphanet |
| IKZF3 | IKZF3 | GWAS, Orphanet |
| IL2RA | IL2RA | GWAS, Orphanet |
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| CD19 | Definitive | Autosomal recessive | immunodeficiency, common variable, 3 | 3 |
| CR2 | Definitive | Autosomal recessive | immunodeficiency, common variable, 7 | 5 |
| ICOS | Strong | Autosomal recessive | immunodeficiency, common variable, 1 | 5 |
| NFKB1 | Strong | Autosomal dominant | immunodeficiency, common variable, 12 | 3 |
| NFKB2 | Strong | Autosomal dominant | immunodeficiency, common variable, 10 | 5 |
| TNFRSF13B | Strong | Autosomal recessive | immunodeficiency, common variable, 2 | 6 |
| BLK | Moderate | Autosomal dominant | common variable immunodeficiency | 5 |
| MS4A1 | Moderate | Autosomal recessive | immunodeficiency, common variable, 5 | 3 |
| TNFRSF13C | Moderate | Autosomal recessive | immunodeficiency, common variable, 4 | 4 |
| CD81 | Supportive | Autosomal dominant | common variable immunodeficiency | 2 |
| PRKCD | Supportive | Autosomal dominant | common variable immunodeficiency | 5 |
| TNFSF12 | Supportive | Autosomal dominant | common variable immunodeficiency | 3 |
| TNFSF13 | Limited | Autosomal recessive | common variable immunodeficiency | 2 |
| VAV1 | Limited | Autosomal dominant | common variable immunodeficiency |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| TNFSF12 | Orphanet:696931 | Common variable immunodeficiency phenotype due to TWEAK deficiency |
| CD40LG | Orphanet:101088 | X-linked hyper-IgM syndrome |
| TNFRSF13B | Orphanet:696907 | Common variable immunodeficiency phenotype due to homozygous TACI deficiency |
| NFKB1 | Orphanet:696874 | NFKB1-related immune dysregulation |
| NFKB2 | Orphanet:293978 | Deficiency in anterior pituitary function-variable immunodeficiency syndrome |
| BLK | Orphanet:536 | Systemic lupus erythematosus |
| BLK | Orphanet:552 | MODY |
| CD19 | Orphanet:696881 | Common variable immunodeficiency phenotype due to CD19/CD81 deficiency |
| CD81 | Orphanet:696881 | Common variable immunodeficiency phenotype due to CD19/CD81 deficiency |
| TNFRSF13C | Orphanet:696925 | Adult-onset common variable immunodeficiency due to BAFF-receptor deficiency |
| CR2 | Orphanet:536 | Systemic lupus erythematosus |
| CR2 | Orphanet:696894 | Common variable immunodeficiency phenotype due to CD21 deficiency |
| ICOS | Orphanet:695183 | Late-onset combined immunodeficiency due to ICOS deficiency |
| PRKCD | Orphanet:664711 | EBV-induced lymphoproliferative disease due to PRKCD deficiency |
| BTK | Orphanet:47 | X-linked agammaglobulinemia |
| BTK | Orphanet:632 | Short stature due to isolated growth hormone deficiency with X-linked hypogammaglobulinemia |
| SUOX | Orphanet:99731 | Isolated sulfite oxidase deficiency |
| TNFSF15 | Orphanet:186 | Primary biliary cholangitis |
| TYK2 | Orphanet:300865 | Primary cutaneous anaplastic large cell lymphoma |
| TYK2 | Orphanet:331226 | Susceptibility to infection due to TYK2 deficiency |
| TYK2 | Orphanet:98842 | Lymphomatoid papulosis |
| IKZF3 | Orphanet:67038 | B-cell chronic lymphocytic leukemia |
| IKZF3 | Orphanet:699590 | Immune dysregulation with immunodeficiency due to AIOLOS haploinsufficiency |
| IKZF3 | Orphanet:699593 | Combined immunodeficiency-lymphopenia-cancer predisposing syndrome due to AIOLOS deficiency |
| CARD9 | Orphanet:457088 | Predisposition to invasive fungal disease due to CARD9 deficiency |
| ZMIZ1 | Orphanet:528084 | Non-specific syndromic intellectual disability |
| ZNF365 | Orphanet:2073 | Narcolepsy type 1 |
| ZNF365 | Orphanet:83465 | Narcolepsy type 2 |
| LRRK2 | Orphanet:2828 | Young-onset Parkinson disease |
| LRRK2 | Orphanet:411602 | Hereditary late-onset Parkinson disease |
| IL23R | Orphanet:117 | Behçet disease |
| TTC7A | Orphanet:436252 | Combined immunodeficiency-multiple intestinal atresia |
| CRB1 | Orphanet:251295 | Pigmented paravenous retinochoroidal atrophy |
| CRB1 | Orphanet:35612 | Nanophthalmos |
| CRB1 | Orphanet:65 | Leber congenital amaurosis |
| CRB1 | Orphanet:791 | Retinitis pigmentosa |
| ANKRD55 | Orphanet:85408 | Rheumatoid factor-negative polyarticular juvenile idiopathic arthritis |
| ANKRD55 | Orphanet:85410 | Oligoarticular juvenile idiopathic arthritis |
| DAG1 | Orphanet:206599 | Isolated asymptomatic elevation of creatine phosphokinase |
| DAG1 | Orphanet:280333 | Alpha-dystroglycan-related limb-girdle muscular dystrophy R16 |
| DAG1 | Orphanet:370997 | Muscle-eye-brain disease with bilateral multicystic leucodystrophy |
| DAG1 | Orphanet:899 | Walker-Warburg syndrome |
| GPR35 | Orphanet:171 | Primary sclerosing cholangitis |
| NOD2 | Orphanet:90340 | Blau syndrome |
| IKBKG | Orphanet:464 | Incontinentia pigmenti |
| IKBKG | Orphanet:69088 | Hypohidrotic ectodermal dysplasia-immunodeficiency-osteopetrosis-lymphedema syndrome |
| IKBKG | Orphanet:699605 | NEMO deleted exon 5 autoinflammatory syndrome |
| IKBKG | Orphanet:98813 | Hypohidrotic ectodermal dysplasia with immunodeficiency |
| IL10 | Orphanet:117 | Behçet disease |
| IL10 | Orphanet:238569 | Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infections syndrome |
Cohort genes → proteins
65 cohort genes, 63 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 43 |
| gwas_and_clinvar | 1 |
| multi_evidence | 21 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| TNFSF12 | HGNC:11927 | ENSG00000239697 | O43508 | Tumor necrosis factor ligand superfamily member 12 | gencc,clinvar |
| CD40LG | HGNC:11935 | ENSG00000102245 | P29965 | CD40 ligand | gwas,clinvar |
| TNFRSF13B | HGNC:18153 | ENSG00000240505 | O14836 | Tumor necrosis factor receptor superfamily member 13B | gencc,clinvar |
| NFKB1 | HGNC:7794 | ENSG00000109320 | P19838 | Nuclear factor NF-kappa-B p105 subunit | gencc,clinvar |
| NFKB2 | HGNC:7795 | ENSG00000077150 | Q00653 | Nuclear factor NF-kappa-B p100 subunit | gencc,clinvar |
| BLK | HGNC:1057 | ENSG00000136573 | P51451 | Tyrosine-protein kinase Blk | gencc |
| TNFSF13 | HGNC:11928 | ENSG00000161955 | O75888 | Tumor necrosis factor ligand superfamily member 13 | gencc |
| VAV1 | HGNC:12657 | ENSG00000141968 | P15498 | Proto-oncogene vav | gencc |
| CD19 | HGNC:1633 | ENSG00000177455 | P15391 | B-lymphocyte antigen CD19 | gencc |
| CD81 | HGNC:1701 | ENSG00000110651 | P60033 | CD81 antigen | gencc |
| TNFRSF13C | HGNC:17755 | ENSG00000159958 | Q96RJ3 | Tumor necrosis factor receptor superfamily member 13C | gencc |
| CR2 | HGNC:2336 | ENSG00000117322 | P20023 | Complement receptor type 2 | gencc |
| ICOS | HGNC:5351 | ENSG00000163600 | Q9Y6W8 | Inducible T-cell costimulator | gencc |
| MS4A1 | HGNC:7315 | ENSG00000156738 | P11836 | B-lymphocyte antigen CD20 | gencc |
| PRKCD | HGNC:9399 | ENSG00000163932 | Q05655 | Protein kinase C delta type | gencc |
| BTK | HGNC:1133 | ENSG00000010671 | Q06187 | Tyrosine-protein kinase BTK | clinvar |
| SUOX | HGNC:11460 | ENSG00000139531 | P51687 | Sulfite oxidase, mitochondrial | gwas |
| TNFRSF6B | HGNC:11921 | ENSG00000243509 | O95407 | Tumor necrosis factor receptor superfamily member 6B | gwas |
| TNFSF15 | HGNC:11931 | ENSG00000181634 | O95150 | Tumor necrosis factor ligand superfamily member 15 | gwas |
| TNFSF18 | HGNC:11932 | ENSG00000120337 | Q9UNG2 | Tumor necrosis factor ligand superfamily member 18 | gwas |
| TRG-GCC2-6 | HGNC:12273 | tRNA-Gly (anticodon GCC) 2-6 | clinvar | ||
| EIPR1 | HGNC:12383 | ENSG00000032389 | Q53HC9 | EARP and GARP complex-interacting protein 1 | gwas |
| TYK2 | HGNC:12440 | ENSG00000105397 | P29597 | Non-receptor tyrosine-protein kinase TYK2 | gwas |
| IKZF3 | HGNC:13178 | ENSG00000161405 | Q9UKT9 | Zinc finger protein Aiolos | gwas |
| CARD9 | HGNC:16391 | ENSG00000187796 | Q9H257 | Caspase recruitment domain-containing protein 9 | gwas |
| ZMIZ1 | HGNC:16493 | ENSG00000108175 | Q9ULJ6 | Zinc finger MIZ domain-containing protein 1 | gwas |
| FNBP1 | HGNC:17069 | ENSG00000187239 | Q96RU3 | Formin-binding protein 1 | gwas |
| ANKRD30A | HGNC:17234 | ENSG00000148513 | Q9BXX3 | Ankyrin repeat domain-containing protein 30A | gwas |
| SBK1 | HGNC:17699 | ENSG00000188322 | Q52WX2 | Serine/threonine-protein kinase SBK1 | gwas |
| ZNF365 | HGNC:18194 | ENSG00000138311 | Q70YC4 | Talanin | gwas |
| ADGRL2 | HGNC:18582 | ENSG00000117114 | O95490 | Adhesion G protein-coupled receptor L2 | gwas |
| LRRK2 | HGNC:18618 | ENSG00000188906 | Q5S007 | Leucine-rich repeat serine/threonine-protein kinase 2 | gwas |
| IL23R | HGNC:19100 | ENSG00000162594 | Q5VWK5 | Interleukin-23 receptor | gwas |
| TTC7A | HGNC:19750 | ENSG00000068724 | Q9ULT0 | Tetratricopeptide repeat protein 7A | clinvar |
| ATG16L1 | HGNC:21498 | ENSG00000085978 | Q676U5 | Autophagy-related protein 16-1 | gwas |
| CRB1 | HGNC:2343 | ENSG00000134376 | P82279 | Protein crumbs homolog 1 | gwas |
| ADCY7 | HGNC:238 | ENSG00000121281 | P51828 | Adenylate cyclase type 7 | gwas |
| CYTL1 | HGNC:24435 | ENSG00000170891 | Q9NRR1 | Cytokine-like protein 1 | gwas |
| ANKRD55 | HGNC:25681 | ENSG00000164512 | Q3KP44 | Ankyrin repeat domain-containing protein 55 | gwas |
| DAG1 | HGNC:2666 | ENSG00000173402 | Q14118 | Dystroglycan 1 | gwas |
| ERAP2 | HGNC:29499 | ENSG00000164308 | Q6P179 | Endoplasmic reticulum aminopeptidase 2 | gwas |
| PSMG1 | HGNC:3043 | ENSG00000183527 | O95456 | Proteasome assembly chaperone 1 | gwas |
| ATXN2L | HGNC:31326 | ENSG00000168488 | Q8WWM7 | Ataxin-2-like protein | gwas |
| LURAP1L | HGNC:31452 | ENSG00000153714 | Q8IV03 | Leucine rich adaptor protein 1-like | gwas |
| EFNB2 | HGNC:3227 | ENSG00000125266 | P52799 | Ephrin-B2 | gwas |
| TNFSF12-TNFSF13 | HGNC:33537 | ENSG00000248871 | TNFSF12-TNFSF13 readthrough | clinvar | |
| FUT2 | HGNC:4013 | ENSG00000176920 | Q10981 | Galactoside alpha-(1,2)-fucosyltransferase 2 | gwas |
| GPR35 | HGNC:4492 | ENSG00000178623 | Q9HC97 | G-protein coupled receptor 35 | gwas |
| NOD2 | HGNC:5331 | ENSG00000167207 | Q9HC29 | Nucleotide-binding oligomerization domain-containing protein 2 | gwas |
| IKBKG | HGNC:5961 | ENSG00000269335 | Q9Y6K9 | NF-kappa-B essential modulator | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| TNFSF12 | Tumor necrosis factor ligand superfamily member 12 | Binds to FN14 and possibly also to TNRFSF12/APO3. |
| CD40LG | CD40 ligand | Cytokine that acts as a ligand to CD40/TNFRSF5. |
| TNFRSF13B | Tumor necrosis factor receptor superfamily member 13B | Receptor for TNFSF13/APRIL and TNFSF13B/TALL1/BAFF/BLYS that binds both ligands with similar high affinity. |
| NFKB1 | Nuclear factor NF-kappa-B p105 subunit | NF-kappa-B is a pleiotropic transcription factor present in almost all cell types and is the endpoint of a series of signal transduction events that are initiated by a vast array of stimuli related to many biological processes such as infl… |
| NFKB2 | Nuclear factor NF-kappa-B p100 subunit | NF-kappa-B is a pleiotropic transcription factor present in almost all cell types and is the endpoint of a series of signal transduction events that are initiated by a vast array of stimuli related to many biological processes such as infl… |
| BLK | Tyrosine-protein kinase Blk | Non-receptor tyrosine kinase involved in B-lymphocyte development, differentiation and signaling. |
| TNFSF13 | Tumor necrosis factor ligand superfamily member 13 | Cytokine that binds to TNFRSF13B/TACI and to TNFRSF17/BCMA. |
| VAV1 | Proto-oncogene vav | Couples tyrosine kinase signals with the activation of the Rho/Rac GTPases, thus leading to cell differentiation and/or proliferation. |
| CD19 | B-lymphocyte antigen CD19 | Functions as a coreceptor for the B-cell antigen receptor complex (BCR) on B-lymphocytes. |
| CD81 | CD81 antigen | Structural component of specialized membrane microdomains known as tetraspanin-enriched microdomains (TERMs), which act as platforms for receptor clustering and signaling. |
| TNFRSF13C | Tumor necrosis factor receptor superfamily member 13C | B-cell receptor specific for TNFSF13B/TALL1/BAFF/BLyS. |
| CR2 | Complement receptor type 2 | Serves as a receptor for various ligands including complement component CD3d, HNRNPU OR IFNA1. |
| ICOS | Inducible T-cell costimulator | Stimulatory receptor expressed in activated or antigen-experienced T-cells that plays an important role in the immune response. |
| MS4A1 | B-lymphocyte antigen CD20 | B-lymphocyte-specific membrane protein that plays a role in the regulation of cellular calcium influx necessary for the development, differentiation, and activation of B-lymphocytes. |
| PRKCD | Protein kinase C delta type | Calcium-independent, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase that plays contrasting roles in cell death and cell survival by functioning as a pro-apoptotic protein during DNA damage-induced apoptosi… |
| BTK | Tyrosine-protein kinase BTK | Non-receptor tyrosine kinase indispensable for B lymphocyte development, differentiation and signaling. |
| SUOX | Sulfite oxidase, mitochondrial | Catalyzes the oxidation of sulfite to sulfate, the terminal reaction in the oxidative degradation of sulfur-containing amino acids. |
| TNFRSF6B | Tumor necrosis factor receptor superfamily member 6B | Decoy receptor that can neutralize the cytotoxic ligands TNFS14/LIGHT, TNFSF15 and TNFSF6/FASL. |
| TNFSF15 | Tumor necrosis factor ligand superfamily member 15 | Receptor for TNFRSF25 and TNFRSF6B. |
| TNFSF18 | Tumor necrosis factor ligand superfamily member 18 | Cytokine that binds to TNFRSF18/AITR/GITR. |
| EIPR1 | EARP and GARP complex-interacting protein 1 | Acts as a component of endosomal retrieval machinery that is involved in protein transport from early endosomes to either recycling endosomes or the trans-Golgi network. |
| TYK2 | Non-receptor tyrosine-protein kinase TYK2 | Tyrosine kinase of the non-receptor type involved in numerous cytokines and interferons signaling, which regulates cell growth, development, cell migration, innate and adaptive immunity. |
| IKZF3 | Zinc finger protein Aiolos | Transcription factor that plays an important role in the regulation of lymphocyte differentiation. |
| CARD9 | Caspase recruitment domain-containing protein 9 | Adapter protein that plays a key role in innate immune response against fungi by forming signaling complexes downstream of C-type lectin receptors. |
| ZMIZ1 | Zinc finger MIZ domain-containing protein 1 | Acts as a transcriptional coactivator. |
| FNBP1 | Formin-binding protein 1 | May act as a link between RND2 signaling and regulation of the actin cytoskeleton. |
| SBK1 | Serine/threonine-protein kinase SBK1 | May be involved in signal-transduction pathways related to the control of brain development. |
| ZNF365 | Talanin | May play a role in uric acid excretion. |
| ADGRL2 | Adhesion G protein-coupled receptor L2 | Orphan adhesion G-protein coupled receptor (aGPCR), which mediates synapse specificity. |
| LRRK2 | Leucine-rich repeat serine/threonine-protein kinase 2 | Serine/threonine-protein kinase which phosphorylates a broad range of proteins involved in multiple processes such as neuronal plasticity, innate immunity, autophagy, and vesicle trafficking. |
| IL23R | Interleukin-23 receptor | Associates with IL12RB1 to form the interleukin-23 receptor. |
| TTC7A | Tetratricopeptide repeat protein 7A | Component of a complex required to localize phosphatidylinositol 4-kinase (PI4K) to the plasma membrane. |
| ATG16L1 | Autophagy-related protein 16-1 | Plays an essential role in both canonical and non-canonical autophagy: interacts with ATG12-ATG5 to mediate the lipidation to ATG8 family proteins (MAP1LC3A, MAP1LC3B, MAP1LC3C, GABARAPL1, GABARAPL2 and GABARAP). |
| CRB1 | Protein crumbs homolog 1 | Plays a role in photoreceptor morphogenesis in the retina. |
| ADCY7 | Adenylate cyclase type 7 | Adenylate cyclase that mediates formation of both cyclic AMP (cAMP) and cyclic di-AMP (c-di-AMP). |
| DAG1 | Dystroglycan 1 | The dystroglycan complex is involved in a number of signaling events and processes including laminin deposition and extracellular matrix assembly, acetylcholine receptor clustering, sarcolemmal stability, cell survival, peripheral nerve my… |
| ERAP2 | Endoplasmic reticulum aminopeptidase 2 | Aminopeptidase that plays a central role in peptide trimming, a step required for the generation of most HLA class I-binding peptides. |
| PSMG1 | Proteasome assembly chaperone 1 | Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG2. |
| ATXN2L | Ataxin-2-like protein | Involved in the regulation of stress granule and P-body formation. |
| EFNB2 | Ephrin-B2 | Cell surface transmembrane ligand for Eph receptors, a family of receptor tyrosine kinases which are crucial for migration, repulsion and adhesion during neuronal, vascular and epithelial development. |
| FUT2 | Galactoside alpha-(1,2)-fucosyltransferase 2 | Catalyzes the transfer of L-fucose, from a guanosine diphosphate-beta-L-fucose, to the terminal galactose on both O- and N-linked glycans chains of cell surface glycoproteins and glycolipids and the resulting epitope regulates several proc… |
| GPR35 | G-protein coupled receptor 35 | G-protein coupled receptor that binds to several ligands including the tryptophan metabolite kynurenic acid (KYNA), lysophosphatidic acid (LPA) or 5-hydroxyindoleacetic acid (5-HIAA) with high affinity, leading to rapid and transient activ… |
| NOD2 | Nucleotide-binding oligomerization domain-containing protein 2 | Pattern recognition receptor (PRR) that detects bacterial peptidoglycan fragments and other danger signals and plays an important role in gastrointestinal immunity. |
| IKBKG | NF-kappa-B essential modulator | Regulatory subunit of the IKK core complex which phosphorylates inhibitors of NF-kappa-B thus leading to the dissociation of the inhibitor/NF-kappa-B complex and ultimately the degradation of the inhibitor. |
| IL10 | Interleukin-10 | Major immune regulatory cytokine that acts on many cells of the immune system where it has profound anti-inflammatory functions, limiting excessive tissue disruption caused by inflammation. |
| IL12B | Interleukin-12 subunit beta | Cytokine that can act as a growth factor for activated T and NK cells, enhance the lytic activity of NK/lymphokine-activated killer cells, and stimulate the production of IFN-gamma by resting PBMC. |
| IL18R1 | Interleukin-18 receptor 1 | Within the IL18 receptor complex, responsible for the binding of the pro-inflammatory cytokine IL18, but not IL1A nor IL1B. |
| IL21 | Interleukin-21 | Cytokine with immunoregulatory activity. |
| IL2RA | Interleukin-2 receptor subunit alpha | Receptor for interleukin-2. |
| IL5 | Interleukin-5 | Homodimeric cytokine expressed predominantly by T-lymphocytes and NK cells that plays an important role in the survival, differentiation, and chemotaxis of eosinophils. |
Protein-family classification
Druggable: 24 · Difficult: 13 · Unknown: 28 · Druggable fraction: 0.37
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Complement | 2 | 8.2× | 0.082 |
| Kinase | 7 | 3.0× | 0.082 |
| Antibody/Immunoglobulin | 6 | 2.7× | 0.082 |
| Scaffold/PPI | 6 | 1.6× | 0.432 |
| Phosphatase | 1 | 1.3× | 0.903 |
| GPCR | 3 | 1.1× | 0.903 |
| Transcription factor | 7 | 0.9× | 0.928 |
| Enzyme (other) | 4 | 0.7× | 0.928 |
| Protease | 1 | 0.6× | 0.928 |
| Other/Unknown | 28 | 0.8× | 0.986 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| TNFSF12 | Other/Unknown | no | TNF_dom, Tumour_necrosis_fac-like_dom, TNF_Ligand_Superfamily | |
| CD40LG | Other/Unknown | no | CD40L, TNF_dom, Tumour_necrosis_fac-like_dom | |
| TNFRSF13B | Other/Unknown | no | TACI_Cys-rich-dom, TNFR_13B | |
| NFKB1 | Transcription factor | no | NFkB/Dor, Death_dom, Ankyrin_rpt | |
| NFKB2 | Transcription factor | no | NFkB/Dor, Death_dom, Ankyrin_rpt | |
| BLK | Kinase | yes | 2.7.10.2 | Prot_kinase_dom, SH2, Ser-Thr/Tyr_kinase_cat_dom |
| TNFSF13 | Other/Unknown | no | TNF_dom, Tumour_necrosis_fac-like_dom, TNF_CS | |
| VAV1 | Scaffold/PPI | no | DH_dom, SH2, GDS_CDC24_CS | |
| CD19 | Antibody/Immunoglobulin | yes | Ig_sub, Ig-like_dom, Ig-like_fold | |
| CD81 | Other/Unknown | no | Tetraspanin_animals, Tetraspanin_EC2_sf, Tetraspanin/Peripherin | |
| TNFRSF13C | Other/Unknown | no | TNFR_13C_TALL-1-bd, TNFR_13C, TNFR_13C/17 | |
| CR2 | Complement | yes | Sushi_SCR_CCP_dom, Sushi/SCR/CCP_sf, SEZ6_CSMD_C4BPB_Regulators | |
| ICOS | Antibody/Immunoglobulin | yes | Ig_V-set, Ig-like_fold, ICOS | |
| MS4A1 | Other/Unknown | no | CD20-like_TM, MS4A | |
| PRKCD | Kinase | yes | 2.7.11.13 | C2_dom, Prot_kinase_dom, AGC-kinase_C |
| BTK | Kinase | yes | 2.7.10.2 | Prot_kinase_dom, SH2, Ser-Thr/Tyr_kinase_cat_dom |
| SUOX | Enzyme (other) | yes | 1.8.3.1 | OxRdtase_Mopterin-bd_dom, Cyt_B5-like_heme/steroid-bd, MoCF_OxRdtse_dimer |
| TNFRSF6B | Other/Unknown | no | TNFR/NGFR_Cys_rich_reg, TNFRSF6B_N, TNFRSF_decoy_receptor | |
| TNFSF15 | Other/Unknown | no | TNF_dom, TNF, Tumour_necrosis_fac-like_dom | |
| TNFSF18 | Other/Unknown | no | TNF_dom, Tumour_necrosis_fac-like_dom, TNFSF18 | |
| TRG-GCC2-6 | Other/Unknown | no | ||
| EIPR1 | Scaffold/PPI | no | WD40_rpt, WD40/YVTN_repeat-like_dom_sf, WD40_repeat_CS | |
| TYK2 | Kinase | yes | 2.7.10.2 | FERM_domain, Prot_kinase_dom, SH2 |
| IKZF3 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Ikaros_C2H2-ZF | |
| CARD9 | Other/Unknown | no | CARD, DEATH-like_dom_sf, CARD_CARD9 | |
| ZMIZ1 | Transcription factor | no | Znf_MIZ, Znf_RING/FYVE/PHD, ZMIZ1_N | |
| FNBP1 | Scaffold/PPI | no | FCH_dom, SH3_domain, HR1_rho-bd | |
| ANKRD30A | Scaffold/PPI | no | Ankyrin_rpt, Ankyrin_rpt-contain_sf, CC144C-like_CC_dom | |
| SBK1 | Kinase | yes | Prot_kinase_dom, Ser/Thr_kinase_AS, Kinase-like_dom_sf | |
| ZNF365 | Transcription factor | no | GenomicStab_NeuMorph_Reg, FBX41/ZN365_Znf-C2H2 | |
| ADGRL2 | GPCR | yes | GPS, GPCR_2_secretin-like, Lectin_gal-bd_dom | |
| LRRK2 | Kinase | yes | Prot_kinase_dom, Leu-rich_rpt, Leu-rich_rpt_typical-subtyp | |
| IL23R | Antibody/Immunoglobulin | yes | FN3_dom, Ig-like_fold, FN3_sf | |
| TTC7A | Other/Unknown | no | TPR-like_helical_dom_sf, TPR_rpt, TTC7_N | |
| ATG16L1 | Scaffold/PPI | no | WD40_rpt, Autophagy-rel_prot_16_dom, WD40/YVTN_repeat-like_dom_sf | |
| CRB1 | Other/Unknown | no | EGF-type_Asp/Asn_hydroxyl_site, EGF, Laminin_G | |
| ADCY7 | Enzyme (other) | yes | 4.6.1.1 | A/G_cyclase, Adcy_conserved_dom, A/G_cyclase_CS |
| CYTL1 | Other/Unknown | no | CYTL1 | |
| ANKRD55 | Scaffold/PPI | no | Ankyrin_rpt, Ankyrin_rpt-contain_sf | |
| DAG1 | Antibody/Immunoglobulin | yes | Cadg, DAG1_C, Ig-like_fold | |
| ERAP2 | Protease | yes | 3.4.11.1 | Peptidase_M1, Peptidase_M1_dom, ERAP1-like_C_dom |
| PSMG1 | Other/Unknown | no | Proteasome_assmbl_chp_1 | |
| ATXN2L | Other/Unknown | no | LsmAD_domain, PAM2_motif, SM_dom_ATX | |
| LURAP1L | Other/Unknown | no | LURAP1, LURA1/LRA25 | |
| EFNB2 | Other/Unknown | no | Ephrin_RBD, Cupredoxin, Ephrin_CS | |
| TNFSF12-TNFSF13 | Other/Unknown | no | ||
| FUT2 | Enzyme (other) | yes | 2.4.1.344 | Glyco_trans_11 |
| GPR35 | GPCR | yes | GPCR_Rhodpsn, GPCR_Rhodpsn_7TM, GPR35_7tmA | |
| NOD2 | Other/Unknown | no | CARD, Leu-rich_rpt, NACHT_NTPase | |
| IKBKG | Other/Unknown | no | NEMO_N, CC2-LZ_dom, NEMO_ZF |
Expression context
Cohort genes with no expression data: 1.
57 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 64 |
| unknown | 1 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| granulocyte | 10 |
| spleen | 10 |
| monocyte | 10 |
| lymph node | 9 |
| leukocyte | 7 |
| male germ line stem cell (sensu Vertebrata) in testis | 5 |
| vermiform appendix | 5 |
| mononuclear cell | 5 |
| cartilage tissue | 4 |
| ganglionic eminence | 4 |
| left testis | 4 |
| right testis | 4 |
| blood | 3 |
| olfactory bulb | 3 |
| type B pancreatic cell | 3 |
| calcaneal tendon | 3 |
| olfactory segment of nasal mucosa | 3 |
| right hemisphere of cerebellum | 3 |
| right lung | 3 |
| ventricular zone | 3 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| TNFSF12 | 134 | tissue_specific | marker | right coronary artery, thoracic aorta, ascending aorta |
| CD40LG | 124 | tissue_specific | marker | granulocyte, lymph node, blood |
| TNFRSF13B | 158 | tissue_specific | marker | type B pancreatic cell, olfactory bulb, spleen |
| NFKB1 | 252 | ubiquitous | marker | endometrium epithelium, cartilage tissue, calcaneal tendon |
| NFKB2 | 221 | ubiquitous | marker | granulocyte, muscle layer of sigmoid colon, spleen |
| BLK | 145 | tissue_specific | marker | spleen, male germ line stem cell (sensu Vertebrata) in testis, lymph node |
| TNFSF13 | 134 | ubiquitous | marker | monocyte, leukocyte, granulocyte |
| VAV1 | 188 | broad | marker | granulocyte, monocyte, leukocyte |
| CD19 | 164 | tissue_specific | marker | spleen, lymph node, vermiform appendix |
| CD81 | 302 | ubiquitous | marker | stromal cell of endometrium, seminal vesicle, body of uterus |
| TNFRSF13C | 151 | broad | marker | spleen, lymph node, vermiform appendix |
| CR2 | 150 | broad | marker | secondary oocyte, oocyte, spleen |
| ICOS | 110 | tissue_specific | marker | lymph node, vermiform appendix, thymus |
| MS4A1 | 197 | broad | marker | epithelium of nasopharynx, spleen, lymph node |
| PRKCD | 229 | ubiquitous | marker | monocyte, mononuclear cell, leukocyte |
| BTK | 206 | broad | marker | monocyte, mononuclear cell, leukocyte |
| SUOX | 267 | ubiquitous | marker | right lobe of liver, right adrenal gland, right adrenal gland cortex |
| TNFRSF6B | 127 | broad | yes | olfactory segment of nasal mucosa, spleen, subcutaneous adipose tissue |
| TNFSF15 | 149 | broad | marker | cartilage tissue, jejunal mucosa, duodenum |
| TNFSF18 | 98 | broad | yes | male germ line stem cell (sensu Vertebrata) in testis, gall bladder, stromal cell of endometrium |
| TRG-GCC2-6 | ||||
| EIPR1 | 249 | ubiquitous | marker | prefrontal cortex, adenohypophysis, nucleus accumbens |
| TYK2 | 288 | ubiquitous | marker | granulocyte, right hemisphere of cerebellum, adenohypophysis |
| IKZF3 | 155 | broad | marker | granulocyte, lymph node, epithelium of nasopharynx |
| CARD9 | 172 | broad | marker | monocyte, mononuclear cell, leukocyte |
| ZMIZ1 | 295 | ubiquitous | marker | dorsal motor nucleus of vagus nerve, tibia, seminal vesicle |
| FNBP1 | 292 | ubiquitous | marker | corpus callosum, mucosa of stomach, lower esophagus muscularis layer |
| ANKRD30A | 69 | tissue_specific | marker | epithelium of mammary gland, mammary duct, male germ line stem cell (sensu Vertebrata) in testis |
| SBK1 | 195 | broad | yes | cortical plate, ganglionic eminence, cerebellar vermis |
| ZNF365 | 206 | broad | yes | middle temporal gyrus, lateral nuclear group of thalamus, Brodmann (1909) area 23 |
Protein interactions among cohort
Intra-cohort edges: 57.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| INS | 11,670 |
| NFKB1 | 10,484 |
| LRRK2 | 7,628 |
| SMAD3 | 6,440 |
| JAK2 | 6,197 |
| IL10 | 6,185 |
| IKBKG | 4,981 |
| BTK | 4,467 |
| RBMX | 4,460 |
| NFKB2 | 4,041 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ADGRL2 | ATG16L1 | intact |
| ADGRL2 | LURAP1L | string_interaction |
| ANKRD55 | PTPN22 | string_interaction |
| ATG16L1 | NKX2-3 | string_interaction |
| ATG16L1 | NOD2 | biogrid_interaction, string_interaction |
| ATG16L1 | TNFSF15 | string_interaction |
| BTK | CD19 | intact |
| BTK | VAV1 | string_interaction |
| CARD9 | NKX2-3 | string_interaction |
| CARD9 | NOD2 | string_interaction |
| CD19 | CD81 | biogrid_interaction |
| CD19 | CR2 | biogrid_interaction, string_interaction |
| CD19 | IL21 | string_interaction |
| CD19 | TNFRSF13C | string_interaction |
| CD19 | VAV1 | biogrid_interaction |
| CD40LG | ICOS | string_interaction |
| CD40LG | IL21 | string_interaction |
| CD40LG | TNFRSF13B | string_interaction |
| CD40LG | TNFRSF13C | string_interaction |
| CD81 | CR2 | biogrid_interaction |
| CD81 | GPR35 | biogrid_interaction, intact |
| CR2 | TNFRSF13B | string_interaction |
| EFNB2 | TYK2 | biogrid_interaction |
| ICOS | IL21 | string_interaction |
| ICOS | TNFRSF13B | string_interaction |
| IKBKG | NFKB1 | string_interaction |
| IKBKG | NFKB2 | string_interaction |
| IL10 | IL12B | string_interaction |
| IL10 | IL23R | string_interaction |
| IL10 | IL2RA | string_interaction |
| IL10 | IL5 | string_interaction |
| IL10 | NFKB2 | biogrid_interaction |
| IL10 | TNFSF13 | string_interaction |
| IL12B | IL23R | string_interaction |
| IL12B | TYK2 | string_interaction |
| IL18R1 | NKX2-3 | string_interaction |
| IL23R | JAK2 | string_interaction |
| IL23R | NKX2-3 | string_interaction |
| IL23R | NOD2 | string_interaction |
| IL23R | TYK2 | string_interaction |
| JAK2 | TYK2 | string_interaction |
| LURAP1L | NOD2 | intact |
| NFKB1 | NFKB2 | intact, string_interaction |
| NFKB2 | TNFRSF13C | string_interaction |
| NKX2-3 | NOD2 | string_interaction |
| NKX2-3 | TNFSF15 | string_interaction |
| NOD2 | TNFSF15 | string_interaction |
| PRKCD | PTPN22 | intact |
| PSMG1 | TNFRSF6B | string_interaction |
| PTPN22 | VAV1 | intact |
Structural data
PDB: 49 · AlphaFold-only: 14 · No structure: 2
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| INS | P01308 | 382 |
| JAK2 | O60674 | 164 |
| BTK | Q06187 | 156 |
| TYK2 | P29597 | 52 |
| LRRK2 | Q5S007 | 44 |
| IL12B | P29460 | 20 |
| IKBKG | Q9Y6K9 | 17 |
| CD81 | P60033 | 16 |
| ATG16L1 | Q676U5 | 16 |
| NFKB1 | P19838 | 15 |
| ERAP2 | Q6P179 | 14 |
| PTPN22 | Q9Y2R2 | 14 |
| PSMG1 | O95456 | 13 |
| SMAD3 | P84022 | 12 |
| NFKB2 | Q00653 | 11 |
| VAV1 | P15498 | 10 |
| MS4A1 | P11836 | 10 |
| EFNB2 | P52799 | 10 |
| IL2RA | P01589 | 10 |
| PTGER4 | P35408 | 10 |
| CR2 | P20023 | 9 |
| IL10 | P22301 | 9 |
| CD40LG | P29965 | 8 |
| TNFRSF13C | Q96RJ3 | 8 |
| TNFRSF6B | O95407 | 8 |
| CARD9 | Q9H257 | 8 |
| DAG1 | Q14118 | 8 |
| TNFSF15 | O95150 | 7 |
| TNFSF18 | Q9UNG2 | 7 |
| IL5 | P05113 | 5 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| FUT2 | Q10981 | 90.65 |
| EIPR1 | Q53HC9 | 89.26 |
| CYTL1 | Q9NRR1 | 85.86 |
| NOD2 | Q9HC29 | 84.76 |
| TTC7A | Q9ULT0 | 84.59 |
| BLK | P51451 | 81.89 |
| SBK1 | Q52WX2 | 77.87 |
| ADCY7 | P51828 | 77.32 |
| LURAP1L | Q8IV03 | 66.08 |
| ANKRD55 | Q3KP44 | 63.43 |
| NKX2-3 | Q8TAU0 | 60.75 |
| ATXN2L | Q8WWM7 | 49.52 |
| IKZF3 | Q9UKT9 | 48.06 |
| ZNF365 | Q70YC4 | 30.21 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 401. Enrichment computed across 65 evidence-associated genes (50 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 50 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Interleukin-23 signaling | 4 | 101.5× | 2e-05 | TYK2, IL23R, IL12B, JAK2 |
| TNFs bind their physiological receptors | 5 | 39.4× | 3e-05 | TNFRSF13B, TNFRSF6B, TNFSF13, TNFSF15, TNFSF18 |
| IkBA variant leads to EDA-ID | 3 | 97.9× | 4e-04 | NFKB1, NFKB2, IKBKG |
| Antigen activates B Cell Receptor (BCR) leading to generation of second messengers | 4 | 28.6× | 1e-03 | BLK, BTK, VAV1, CD19 |
| Signaling by the B Cell Receptor (BCR) | 4 | 27.7× | 1e-03 | BLK, BTK, CD19, IKBKG |
| TAK1-dependent IKK and NF-kappa-B activation | 4 | 24.0× | 0.001 | NFKB1, NFKB2, NOD2, IKBKG |
| RIP-mediated NFkB activation via ZBP1 | 3 | 40.3× | 0.003 | NFKB1, NFKB2, IKBKG |
| TNF receptor superfamily (TNFSF) members mediating non-canonical NF-kB pathway | 3 | 40.3× | 0.003 | TNFSF12, CD40LG, TNFRSF13C |
| Interleukin-4 and Interleukin-13 signaling | 5 | 10.3× | 0.005 | TYK2, IL23R, IL10, IL12B, JAK2 |
| TRAF6 mediated NF-kB activation | 3 | 27.4× | 0.007 | NFKB1, NFKB2, IKBKG |
| Interleukin-12 signaling | 3 | 24.5× | 0.008 | TYK2, IL12B, JAK2 |
| Interleukin receptor SHC signaling | 3 | 24.5× | 0.008 | IL2RA, IL5, JAK2 |
| DEx/H-box helicases activate type I IFN and inflammatory cytokines production | 2 | 65.3× | 0.012 | NFKB1, NFKB2 |
| CLEC7A (Dectin-1) signaling | 4 | 11.4× | 0.012 | NFKB1, CARD9, IKBKG, PRKCD |
| NOD1/2 Signaling Pathway | 3 | 19.0× | 0.013 | CARD9, NOD2, IKBKG |
| Interleukin-3, Interleukin-5 and GM-CSF signaling | 3 | 19.0× | 0.013 | VAV1, IL5, JAK2 |
| Interleukin-1 processing | 2 | 50.8× | 0.015 | NFKB1, NFKB2 |
| HuR (ELAVL1) binds and stabilizes mRNA | 2 | 50.8× | 0.015 | TNFSF13, PRKCD |
| MAPK1 (ERK2) activation | 2 | 45.7× | 0.017 | TYK2, JAK2 |
| MAPK3 (ERK1) activation | 2 | 41.5× | 0.018 | TYK2, JAK2 |
| Interleukin-27 signaling | 2 | 41.5× | 0.018 | TYK2, JAK2 |
| Interleukin-6 signaling | 2 | 38.1× | 0.018 | TYK2, JAK2 |
| SUMOylation of immune response proteins | 2 | 38.1× | 0.018 | NFKB2, IKBKG |
| Interleukin-35 Signalling | 2 | 38.1× | 0.018 | TYK2, JAK2 |
| C-type lectin receptors (CLRs) | 3 | 14.3× | 0.018 | CARD9, IKBKG, PRKCD |
| Interleukin-10 signaling | 3 | 14.0× | 0.018 | TYK2, IL10, IL12B |
| Regulation of Complement cascade | 3 | 14.0× | 0.018 | CD19, CD81, CR2 |
| Potential therapeutics for SARS | 4 | 9.1× | 0.018 | BTK, TYK2, VAV1, JAK2 |
| Diseases of Immune System | 2 | 35.1× | 0.019 | BTK, IKBKG |
| Diseases associated with the TLR signaling cascade | 2 | 35.1× | 0.019 | BTK, IKBKG |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 60 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| positive regulation of interleukin-17 production | 7 | 70.2× | 5e-09 | TYK2, CARD9, IL23R, NOD2, IL12B, IL21, JAK2 |
| B cell proliferation | 7 | 56.2× | 9e-09 | CD40LG, VAV1, CD19, CR2, IL10, MS4A1, PRKCD |
| immune response | 14 | 11.0× | 9e-09 | TNFSF12, TNFSF13, TNFSF15, TYK2, CR2, ICOS, IKBKG, IL10 (+6 more) |
| positive regulation of T-helper 17 type immune response | 5 | 117.0× | 8e-08 | TYK2, CARD9, IL23R, IL12B, JAK2 |
| positive regulation of T cell proliferation | 7 | 30.2× | 5e-07 | CD40LG, TYK2, TNFRSF13C, IL23R, IL12B, IL21, JAK2 |
| positive regulation of type II interferon production | 7 | 26.2× | 1e-06 | TYK2, IL23R, IL12B, IL18R1, IL21, JAK2, PTPN22 |
| obsolete positive regulation of NF-kappaB transcription factor activity | 7 | 24.0× | 2e-06 | CD40LG, BTK, TNFSF18, CARD9, NOD2, IKBKG, IL18R1 |
| positive regulation of B cell proliferation | 6 | 34.4× | 2e-06 | BTK, TNFSF13, CD81, TNFRSF13C, IL21, IL5 |
| positive regulation of natural killer cell proliferation | 4 | 93.6× | 7e-06 | TYK2, IL23R, IL12B, JAK2 |
| B cell differentiation | 6 | 21.9× | 3e-05 | CD40LG, IKZF3, CR2, IL10, MS4A1, RAG2 |
| B cell receptor signaling pathway | 5 | 33.4× | 3e-05 | NFKB1, BLK, BTK, CD19, MS4A1 |
| T cell costimulation | 5 | 31.2× | 3e-05 | CD40LG, VAV1, TNFRSF13C, EFNB2, ICOS |
| adaptive immune response | 8 | 11.2× | 3e-05 | TNFRSF13B, BTK, TNFSF18, TNFRSF13C, ERAP2, NOD2, IL18R1, JAK2 |
| interleukin-23-mediated signaling pathway | 3 | 140.4× | 5e-05 | TYK2, IL23R, JAK2 |
| positive regulation of NK T cell proliferation | 3 | 140.4× | 5e-05 | TYK2, IL12B, JAK2 |
| positive regulation of canonical NF-kappaB signal transduction | 8 | 9.7× | 8e-05 | CD40LG, BTK, TNFSF15, CARD9, LURAP1L, NOD2, IKBKG, INS |
| positive regulation of cytokine production | 5 | 22.6× | 1e-04 | CARD9, IL10, IL21, INS, PTGER4 |
| JNK cascade | 5 | 22.6× | 1e-04 | NFKB1, CARD9, LRRK2, SMAD3, PTGER4 |
| positive regulation of tumor necrosis factor production | 6 | 15.3× | 1e-04 | BTK, CARD9, LRRK2, NOD2, IL12B, JAK2 |
| interleukin-12-mediated signaling pathway | 3 | 93.6× | 1e-04 | TYK2, IL12B, JAK2 |
| negative regulation of inflammatory response | 6 | 13.7× | 2e-04 | NFKB1, IL10, IL2RA, SMAD3, PRKCD, PTGER4 |
| positive regulation of immunoglobulin production | 4 | 32.1× | 3e-04 | BTK, IL10, IL21, IL5 |
| positive regulation of receptor signaling pathway via JAK-STAT | 4 | 28.8× | 4e-04 | TYK2, IL10, IL5, JAK2 |
| cellular response to virus | 5 | 16.7× | 4e-04 | NFKB1, TYK2, IL21, JAK2, SMAD3 |
| positive regulation of interleukin-10 production | 4 | 26.8× | 5e-04 | CD40LG, NOD2, IL12B, IL21 |
| canonical NF-kappaB signal transduction | 4 | 24.4× | 7e-04 | NFKB1, NFKB2, NOD2, IKBKG |
| positive regulation of granulocyte macrophage colony-stimulating factor production | 3 | 49.6× | 9e-04 | CARD9, IL23R, IL12B |
| tumor necrosis factor-mediated signaling pathway | 4 | 22.0× | 1e-03 | NFKB1, TNFSF18, TNFRSF13C, JAK2 |
| negative regulation of B cell proliferation | 3 | 46.8× | 1e-03 | TNFRSF13B, BTK, IL10 |
| cell surface receptor signaling pathway via JAK-STAT | 4 | 19.4× | 0.001 | TYK2, IL23R, IL12B, JAK2 |
Therapeutics
Drugs indicated for this disease
0 approved, 1 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Human Immunoglobulin G | Phase 3 (in late-stage trials) |
Drug target analysis
Approved (phase 4): 15 · Phase ≥3: 15 · Phased (≥1): 17 · Undrugged: 48
Druggability breadth: 42 of 65 evidence-associated genes (65%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| NFKB1 | INDOPROFEN |
| NFKB2 | INDOPROFEN |
| BLK | AFATINIB |
| PRKCD | INGENOL MEBUTATE |
| BTK | PONATINIB |
| TYK2 | FEDRATINIB |
| IKZF3 | POMALIDOMIDE |
| SBK1 | AFATINIB |
| LRRK2 | PONATINIB |
| GPR35 | AMLEXANOX |
| NOD2 | PACLITAXEL |
| IL5 | BUDESONIDE |
| JAK2 | FEDRATINIB |
| SMAD3 | FLUORESCEIN |
| PTGER4 | DINOPROSTONE |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| NFKB1 | 152 | 4 |
| JAK2 | 100 | 4 |
| BTK | 84 | 4 |
| TYK2 | 72 | 4 |
| BLK | 62 | 4 |
| PRKCD | 49 | 4 |
| LRRK2 | 42 | 4 |
| GPR35 | 30 | 4 |
| NFKB2 | 15 | 4 |
| SBK1 | 14 | 4 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| INDOPROFEN | 4 | NFKB1, NFKB2 |
| VAMOROLONE | 4 | NFKB1, NFKB2 |
| BORTEZOMIB | 4 | NFKB1, NFKB2 |
| DEXAMETHASONE | 4 | NFKB1, NFKB2 |
| SULFASALAZINE | 4 | NFKB1, NFKB2 |
| LEVOSALBUTAMOL | 4 | NFKB1 |
| CLOTRIMAZOLE | 4 | NFKB1 |
| GLIPIZIDE | 4 | NFKB1 |
| SALMETEROL XINAFOATE | 4 | NFKB1 |
| PHENELZINE | 4 | NFKB1 |
| SULFAPHENAZOLE | 4 | NFKB1 |
| AMOXAPINE | 4 | NFKB1 |
| PROPANTHELINE | 4 | NFKB1 |
| DECAMETHONIUM | 4 | NFKB1 |
| NICARDIPINE HYDROCHLORIDE | 4 | NFKB1 |
| PHENTOLAMINE MESYLATE | 4 | NFKB1 |
| PHENYLEPHRINE | 4 | NFKB1 |
| CARISOPRODOL | 4 | NFKB1 |
| AZELAIC ACID | 4 | NFKB1 |
| CARBETAPENTANE CITRATE | 4 | NFKB1 |
| NIALAMIDE | 4 | NFKB1 |
| EPINEPHRINE BITARTRATE | 4 | NFKB1 |
| NILUTAMIDE | 4 | NFKB1 |
| BUDESONIDE | 4 | IL5, NFKB1 |
| ESTRONE | 4 | NFKB1 |
| METHAPYRILENE | 4 | NFKB1 |
| PIMOZIDE | 4 | NFKB1 |
| TRIAMCINOLONE | 4 | NFKB1 |
| BISOPROLOL FUMARATE | 4 | NFKB1 |
| AZACITIDINE | 4 | NFKB1 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 11.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| JAK2 | 2,018 | Binding:1911, Functional:51, ADMET:48, Unclassified:4, Toxicity:4 |
| BTK | 1,836 | Binding:1810, Functional:23, ADMET:3 |
| TYK2 | 1,083 | Binding:1043, Functional:39, ADMET:1 |
| LRRK2 | 809 | Binding:799, ADMET:7, Functional:3 |
| PRKCD | 804 | Binding:790, Functional:14 |
| BLK | 483 | Binding:477, ADMET:4, Functional:2 |
| PTGER4 | 288 | Binding:207, Functional:80, ADMET:1 |
| NFKB1 | 256 | Binding:249, Functional:7 |
| NFKB2 | 230 | Binding:226, Functional:4 |
| GPR35 | 162 | Binding:84, Functional:78 |
| PTPN22 | 137 | Binding:122, Functional:10, ADMET:5 |
| NOD2 | 126 | Binding:121, Functional:5 |
| IKZF3 | 101 | Binding:100, Functional:1 |
| SBK1 | 97 | Binding:97 |
| ERAP2 | 46 | Binding:40, ADMET:4, Functional:2 |
| IKBKG | 38 | Binding:30, Functional:8 |
| SMAD3 | 24 | Binding:18, Functional:6 |
| ADCY7 | 16 | Binding:14, Functional:2 |
| IL23R | 13 | Binding:13 |
| CD40LG | 8 | Binding:8 |
| INS | 8 | Binding:7, ADMET:1 |
| CD81 | 7 | Binding:7 |
| ICOS | 7 | Binding:7 |
| RBMX | 6 | Binding:6 |
| PSMG1 | 5 | Binding:5 |
| DAG1 | 4 | Binding:4 |
| IL5 | 4 | Binding:4 |
| FUT2 | 2 | Binding:2 |
| IL2RA | 2 | Binding:2 |
| ACADVL | 2 | Binding:2 |
| VAV1 | 1 | Binding:1 |
| ATXN2L | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| BLK | 2.7.10.2 | non-specific protein-tyrosine kinase |
| PRKCD | 2.7.11.13 | protein kinase C |
| BTK | 2.7.10.2 | non-specific protein-tyrosine kinase |
| SUOX | 1.8.3.1 | sulfite oxidase |
| TYK2 | 2.7.10.2 | non-specific protein-tyrosine kinase |
| ADCY7 | 4.6.1.1 | adenylate cyclase |
| ERAP2 | 3.4.11.1, 3.4.11.6 | leucyl aminopeptidase, aminopeptidase B |
| FUT2 | 2.4.1.344, 2.4.1.69 | type 2 galactoside alpha-(1,2)-fucosyltransferase, type 1 galactoside alpha-(1,2)-fucosyltransferase |
| JAK2 | 2.7.10.2 | non-specific protein-tyrosine kinase |
| ACADVL | 1.3.8.8, 1.3.8.9 | long-chain acyl-CoA dehydrogenase, very-long-chain acyl-CoA dehydrogenase |
| PTPN22 | 3.1.3.48 | protein-tyrosine-phosphatase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| NFKB1 | 256 |
| NFKB2 | 230 |
| BLK | 483 |
| PRKCD | 804 |
| BTK | 1,836 |
| TYK2 | 1,083 |
| IKZF3 | 101 |
| LRRK2 | 809 |
| GPR35 | 162 |
| NOD2 | 126 |
| JAK2 | 2,018 |
| PTGER4 | 288 |
| PTPN22 | 137 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 64; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| INDOPROFEN | 4 | NFKB1, NFKB2 |
| VAMOROLONE | 4 | NFKB1, NFKB2 |
| BORTEZOMIB | 4 | NFKB1, NFKB2 |
| DEXAMETHASONE | 4 | NFKB1, NFKB2 |
| SULFASALAZINE | 4 | NFKB1, NFKB2 |
| LEVOSALBUTAMOL | 4 | NFKB1 |
| CLOTRIMAZOLE | 4 | NFKB1 |
| GLIPIZIDE | 4 | NFKB1 |
| SALMETEROL XINAFOATE | 4 | NFKB1 |
| PHENELZINE | 4 | NFKB1 |
| SULFAPHENAZOLE | 4 | NFKB1 |
| AMOXAPINE | 4 | NFKB1 |
| PROPANTHELINE | 4 | NFKB1 |
| DECAMETHONIUM | 4 | NFKB1 |
| NICARDIPINE HYDROCHLORIDE | 4 | NFKB1 |
| PHENTOLAMINE MESYLATE | 4 | NFKB1 |
| PHENYLEPHRINE | 4 | NFKB1 |
| CARISOPRODOL | 4 | NFKB1 |
| AZELAIC ACID | 4 | NFKB1 |
| CARBETAPENTANE CITRATE | 4 | NFKB1 |
| NIALAMIDE | 4 | NFKB1 |
| EPINEPHRINE BITARTRATE | 4 | NFKB1 |
| NILUTAMIDE | 4 | NFKB1 |
| BUDESONIDE | 4 | IL5, NFKB1 |
| ESTRONE | 4 | NFKB1 |
| METHAPYRILENE | 4 | NFKB1 |
| PIMOZIDE | 4 | NFKB1 |
| TRIAMCINOLONE | 4 | NFKB1 |
| BISOPROLOL FUMARATE | 4 | NFKB1 |
| AZACITIDINE | 4 | NFKB1 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 15 | NFKB1, NFKB2, BLK, PRKCD, BTK, TYK2, IKZF3, SBK1, LRRK2, GPR35 (+5 more) |
| B | Phased (≥1) drug, not yet approved | 2 | ERAP2, ACADVL |
| C | Druggable family + PDB, no drug | 11 | CD19, CR2, ICOS, SUOX, ADGRL2, IL23R, DAG1, IL12B, IL18R1, IL2RA (+1 more) |
| D | Druggable family + AlphaFold only, no drug | 2 | ADCY7, FUT2 |
| E | Difficult family or no structure, no drug | 35 | TNFSF12, CD40LG, TNFRSF13B, TNFSF13, VAV1, CD81, TNFRSF13C, MS4A1, TNFRSF6B, TNFSF15 (+25 more) |
Undrugged target profiles
48 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| CARD9 | 0 | NOD2 |
| IL23R | 13 | JAK2 |
| ATG16L1 | 0 | NOD2 |
| NKX2-3 | 0 | NOD2 |
| PTPN22 | 137 | — |
| TNFSF12 | 0 | — |
| CD40LG | 8 | — |
| TNFRSF13B | 0 | — |
| TNFSF13 | 0 | — |
| VAV1 | 1 | — |
| CD19 | 0 | — |
| CD81 | 7 | — |
| TNFRSF13C | 0 | — |
| CR2 | 0 | — |
| ICOS | 7 | — |
| MS4A1 | 0 | — |
| SUOX | 0 | — |
| TNFRSF6B | 0 | — |
| TNFSF15 | 0 | — |
| TNFSF18 | 0 | — |
| TRG-GCC2-6 | 0 | — |
| EIPR1 | 0 | — |
| ZMIZ1 | 0 | — |
| FNBP1 | 0 | — |
| ANKRD30A | 0 | — |
| ZNF365 | 0 | — |
| ADGRL2 | 0 | — |
| TTC7A | 0 | — |
| CRB1 | 0 | — |
| ADCY7 | 16 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 42.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 18 |
| PHASE2 | 9 |
| PHASE3 | 8 |
| PHASE4 | 4 |
| PHASE1/PHASE2 | 2 |
| PHASE1 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT05193552 | PHASE4 | RECRUITING | Usage of Spirometry in Managing IgG Therapy in CVID With Airway Disease |
| NCT00520494 | PHASE4 | COMPLETED | Efficacy and Safety of Vivaglobin® in Previously Untreated Patients With Primary Immunodeficiency |
| NCT01289847 | PHASE4 | COMPLETED | A Study to Find Out How Safe and Effective Gammaplex® is in Young People With Primary Immunodeficiency |
| NCT01946906 | PHASE4 | COMPLETED | The Rifaximin Study in CVID |
| NCT00168012 | PHASE3 | COMPLETED | Efficacy and Safety of Intravenous Immunoglobulin IVIG-F10 in Patients With Primary Immunodeficiencies (PID) |
| NCT00168025 | PHASE3 | COMPLETED | Efficacy and Safety of Intravenous Immunoglobulin IgPro10 in Patients With Primary Immunodeficiencies (PID) |
| NCT00220766 | PHASE3 | COMPLETED | Rapid Infusion of Immune Globulin Intravenous (Human) In Primary Immunodeficiency Patients |
| NCT00322556 | PHASE3 | COMPLETED | Safety and Efficacy of Intravenous Immunoglobulin IgPro10 in Patients With Primary Immunodeficiencies (PID) |
| NCT00542997 | PHASE3 | COMPLETED | Study of Subcutaneous Immune Globulin in Patients Requiring IgG Replacement Therapy |
| NCT01884311 | PHASE3 | COMPLETED | Pharmacokinetics (PK) and Safety of Subgam-VF in Primary Immunodeficiency Diseases |
| NCT01963143 | PHASE3 | COMPLETED | Bioequivalence Study to Evaluate the Pharmacokinetics, Safety, and Tolerability of Gammaplex® 10 and Gammaplex® 5% in Primary Immunodeficiency Diseases |
| NCT02247141 | PHASE3 | COMPLETED | A Multi-centre Open Study to Assess the Safety and Efficacy of Subgam® |
| NCT01821781 | PHASE2 | ACTIVE_NOT_RECRUITING | Immune Disorder HSCT Protocol |
| NCT01852370 | PHASE1/PHASE2 | ENROLLING_BY_INVITATION | Sequential Cadaveric Lung and Bone Marrow Transplant for Immune Deficiency Diseases |
| NCT02579967 | PHASE2 | RECRUITING | Pilot Trial of Allogeneic Blood or Marrow Transplantation for Primary Immunodeficiencies |
| NCT03663933 | PHASE2 | ACTIVE_NOT_RECRUITING | Allogeneic Hematopoietic Cell Transplantation for Disorders of T-cell Proliferation and/or Dysregulation |
| NCT04339777 | PHASE2 | RECRUITING | Allogeneic Hematopoietic Stem Cell Transplant for Patients With Inborn Errors of Immunity |
| NCT04925375 | PHASE2 | RECRUITING | Abatacept for the Treatment of Common Variable Immunodeficiency With Interstitial Lung Disease |
| NCT05593588 | PHASE2 | ENROLLING_BY_INVITATION | Senolytics Treatment of Interstitial Lung Disease in Common Variable Immunodeficiency |
| NCT06897358 | PHASE2 | ACTIVE_NOT_RECRUITING | Leniolisib for Immune Dysregulation in CVID |
| NCT07284641 | PHASE2 | RECRUITING | Hematopoietic Stem Cell Transplantation (HSCT) for Common Variable Immunodeficiency (CVID) and Other Autoimmune Manifestations of Primary Immune Regulatory Disorders (PIRD) |
| NCT01489618 | PHASE2 | TERMINATED | Prime Boost Vaccination Strategy Combining Conjugated Anti- Pneumococcal Vaccine (s0) and Polysaccharide Anti- Pneumococcal Vaccine (s4) Compared to Polysaccharide Anti- Pneumococcal Vaccine Alone (s4) In Patients With Common Variable Immunodeficiency |
| NCT03513328 | PHASE1/PHASE2 | COMPLETED | Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation |
| NCT00263237 | PHASE1 | COMPLETED | STA-5326 Meslylate to Treat Gut Inflammation Associated With Common Variable Immunodeficiency |
| NCT00943514 | Not specified | RECRUITING | Natural History of Bronchiectasis |
| NCT01652092 | Not specified | ACTIVE_NOT_RECRUITING | Allogeneic Hematopoietic Stem Cell Transplant for Patients With Primary Immune Deficiencies |
| NCT05321407 | Not specified | ACTIVE_NOT_RECRUITING | COVID-19 Vaccine Responses in PIDD Subjects |
| NCT07255157 | Not specified | NOT_YET_RECRUITING | Peripheral Helper T-cells in Common Variable ImmunoDeficiency |
| NCT00004695 | Not specified | COMPLETED | Randomized Study of Polyethylene-Glycol-Conjugated Interleukin 2 in Patients With Common Variable Immunodeficiency |
| NCT00006054 | Not specified | TERMINATED | Allogeneic Bone Marrow Transplantation in Patients With Primary Immunodeficiencies |
| NCT00015431 | Not specified | COMPLETED | Immune System and Gut Abnormalities in Patients With Common Variable Immunodeficiency With and Without Gastrointestinal Symptoms |
| NCT00661401 | Not specified | COMPLETED | Specific IgG Antibody in Patients With Primary Antibody Deficiencies Treated With Subcutaneous Immunoglobulin |
| NCT01196702 | Not specified | COMPLETED | Lymphocyte Immunophenotyping in Common Variable Immunodeficiency |
| NCT01981785 | Not specified | UNKNOWN | Investigation of Immune Disorders and Deficiencies |
| NCT02960399 | Not specified | TERMINATED | Assessment of Immunogenicity of Zostavax® in Patients With Antibody Deficiency 60 Years of Age and Older |
| NCT03188419 | Not specified | COMPLETED | Breadth of Donor Options for People With Inherited Diseases Requiring Allogeneic Hematopoietic Stem Cell Transplant in the Era of Alternative Donor Transplants Using Post-Transplantation Cyclophosphamide |
| NCT03211689 | Not specified | COMPLETED | The Impact of Exercise on Stress, Fatigue, and Quality of Life in Individuals With Primary Immunodeficiency Disease |
| NCT03534479 | Not specified | COMPLETED | Human IgGs and Endothelial Function in Vivo in Humans |
| NCT05310604 | Not specified | COMPLETED | Early Detection of Primary Antibody Deficiencies in Primary Care Facilities by an Algorithm Driven Selection of Serologic Testing in Individuals at Risk. |
| NCT05481554 | Not specified | UNKNOWN | Composition and Function of Gut Microbiota in Porto-sinusoidal Vascular Disease Associated With Variable Common Immunodeficiency |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| HUMAN IMMUNOGLOBULIN G | 4 | 3 |
| DEXTROSE | 4 | 1 |
| LENIOLISIB | 4 | 1 |
| PENTOSTATIN | 4 | 1 |
| RIFAXIMIN | 4 | 1 |
| APILIMOD | 2 | 1 |
| FISETIN | 2 | 1 |
| CHEMBL423707 | 0 | 1 |
| CHEMBL3643409 | 0 | 1 |
Related Atlas pages
- Cohort genes: TNFSF12, TNFRSF13B, NFKB1, NFKB2, CD40LG, BLK, TNFSF13, VAV1, CD19, CD81, TNFRSF13C, CR2, ICOS, MS4A1, PRKCD, BTK, SUOX, TNFRSF6B, TNFSF15, TNFSF18, TRG-GCC2-6, EIPR1, TYK2, IKZF3, CARD9, ZMIZ1, FNBP1, ANKRD30A, SBK1, ZNF365, ADGRL2, LRRK2, IL23R, TTC7A, ATG16L1, CRB1, ADCY7, CYTL1, ANKRD55, DAG1, ERAP2, PSMG1, ATXN2L, LURAP1L, EFNB2, FUT2, GPR35, NOD2, IKBKG, IL10, IL12B, IL18R1, IL21, IL2RA, IL5, INS, JAK2, SMAD3, NKX2-3, ACADVL, PTGER4, PTPN22, RAG2, RBMX
- Drugs: Human Immunoglobulin G, Dextrose, Leniolisib, Pentostatin, Rifaximin
- Associated genes: CTNNBL1