Congenital disorder of glycosylation
diseaseOn this page
Also known as carbohydrate deficient glycoprotein syndromecarbohydrate-deficient glycoprotein syndromecarbohydrate-deficient glycoprotein syndromesCDGcongenital disorders of glycosylation
Summary
Congenital disorder of glycosylation (MONDO:0015286) is a disease (an umbrella term covering 25 Mondo subtypes) caused by variants in ALG14 and GALNT2, with 29 cohort genes and 9 clinical trials. The dominant Reactome pathway is Asparagine N-linked glycosylation (13 cohort genes). Top therapeutic interventions include galactose and d-galactose.
At a glance
- Prevalence: 1-9 / 100 000 (Europe) [Orphanet-validated]
- Causal genes: ALG14 (GenCC Strong), GALNT2 (GenCC Strong)
- Umbrella term: 25 Mondo subtypes
- Cohort genes: 29
- ClinVar variants: 334
- Clinical trials: 9
Clinical features
Epidemiology
Prevalence records
1 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Prevalence at birth | 1-9 / 100 000 | 1.5 | Europe | Validated |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | congenital disorder of glycosylation |
| Mondo ID | MONDO:0015286 |
| MeSH | D018981 |
| Orphanet | 137 |
| DOID | DOID:5212 |
| NCIT | C84615 |
| SNOMED CT | 238049009 |
| UMLS | C0282577 |
| MedGen | 76469 |
| GARD | 0010307 |
| Is cancer (heuristic) | no |
Also known as: carbohydrate deficient glycoprotein syndrome · carbohydrate-deficient glycoprotein syndrome · carbohydrate-deficient glycoprotein syndromes · CDG · congenital disorder of glycosylation · congenital disorders of glycosylation
Data availability: 334 ClinVar variants · 14 GenCC gene-disease records.
Disease family
An umbrella term covering 25 Mondo subtypes.
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › inborn errors of metabolism › congenital disorder of glycosylation
Related subtypes (92): thiopurine metabolic disease, hypercalcemia, infantile, hypermanganesemia with dystonia, abdominal obesity-metabolic syndrome, plasma protein metabolism disease, inherited lipid metabolism disorder, lysosomal storage disease, striatonigral degeneration, inborn metal metabolism disorder, inborn vitamin metabolic disorder, chondrocalcinosis 2, Ehlers-Danlos syndrome, spondylodysplastic type, fish eye disease, aromatase excess syndrome, spondyloepiphyseal dysplasia with congenital joint dislocations, hypertriglyceridemia 1, autosomal dominant myoglobinuria, diastrophic dysplasia, hemolytic anemia due to diphosphoglycerate mutase deficiency, multiple epiphyseal dysplasia type 4, atelosteogenesis type II, inherited threoninemia, inborn glycerol kinase deficiency, achondrogenesis type IB, diabetes mellitus, noninsulin-dependent, 1, diabetes mellitus, noninsulin-dependent, 2, renal tubular acidosis, distal, 3, with or without sensorineural hearing loss, diabetes mellitus, noninsulin-dependent, 3, hypercholesterolemia, familial, 4, hypoalphalipoproteinemia, primary, 1, autosomal recessive proximal renal tubular acidosis, diabetes mellitus, noninsulin-dependent, 4, normophosphatemic familial tumoral calcinosis, apolipoprotein c-III deficiency, hypotonia-failure to thrive-microcephaly syndrome, chondrodysplasia with joint dislocations, gPAPP type, gluthathione peroxidase deficiency, congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome, diabetes mellitus, noninsulin-dependent, 5, monogenic diabetes, 2-hydroxyglutaric aciduria, familial hypoparathyroidism, familial intrahepatic cholestasis, inborn aminoacylase deficiency, disorder of lysosomal-related organelles, inborn disorder of porphyrin metabolism, disorder of metabolite absorption and transport, autosomal dominant proximal renal tubular acidosis, neurodegeneration with brain iron accumulation, ferro-cerebro-cutaneous syndrome, familial hypocalciuric hypercalcemia, hypophosphatasia, hereditary amyloidosis, peroxisomal disease, inborn disorder of amino acid and other organic acid metabolism, inborn carbohydrate metabolic disorder, inborn disorder of energy metabolism, inborn disorder of biogenic amine metabolism and transport, inborn disorder of purine or pyrimidine metabolism, spondyloepimetaphyseal dysplasia, PAPSS2 type, hereditary lipodystrophy, hereditary recurrent myoglobinuria, DNA repair disease, 4-hydroxyphenylacetic aciduria, 5-nucleotidase syndrome, antigen-peptide-transporter 2 deficiency, APO A-i deficiency, cardiomyopathy hypogonadism metabolic anomalies, deficiency of coenzyme q cytochrome c reductase, defective apolipoprotein b-100, sulfide quinone oxidoreductase deficiency, congenital disorder of deglycosylation, hypoalphalipoproteinemia, primary, 2, uridine-cytidineuria, NAD(P)HX dehydratase deficiency, inborn disorder of aspartate family metabolism, weinstein kliman scully syndrome, glycoprotein metabolism disease, inherited thyroid metabolism disease, tumoral calcinosis, hyperphosphatemic, familial, 2, tumoral calcinosis, hyperphosphatemic, familial, 3, combined ApoA-I and ApoC-III deficiency, familial hyperphosphatemic tumoral calcinosis/hyperphosphatemic hyperostosis syndrome, tumoral calcinosis, hyperphosphatemic, familial, 1, Waldenstrom macroglobulinemia, mucopolysaccharidosis or mucopolysaccharidosis-like disorder, disorder of peptide and amine metabolism, CFTR-related metabolic syndrome/CF screen positive, inconclusive diagnosis, Lane Hamilton syndrome, SQSTM1-related multisystem proteinopathy, hypertriglyceridemia 2, autosomal dominant dopa-responsive dystonia
Subtypes (25): congenital disorder of glycosylation type I, congenital disorder of glycosylation type II, Larsen-like syndrome, B3GAT3 type, Ehlers-Danlos syndrome, musculocontractural type, temtamy preaxial brachydactyly syndrome, progressive myoclonic epilepsy type 3, autosomal recessive limb-girdle muscular dystrophy type 2P, seizures-scoliosis-macrocephaly syndrome, disorder of protein N-glycosylation, disorder of protein O-glycosylation, inborn disorder of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation, disorder of multiple glycosylation, XYLT1-congenital disorder of glycosylation, congenital muscular dystrophy with intellectual disability, congenital disorder of glycosylation syndrome type 4, congenital disorder of glycosylation with defective fucosylation, SLC10A7-congenital disorder of glycosylation, ALG14-congenital disorder of glycosylation, B3GALT6-congenital disorder of glycosylation, A4GALT-congenital disorder of glycosylation, FAM20B-congenital disorder of glycosylation, ALG10-congenital disorder of glycosylation, congenital disorder of glycosylation, type Ibb, congenital disorder of glycosylation, type Iw, autosomal dominant, congenital disorder of glycosylation, type 1DD
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
334 retrieved; paginated sample, class counts are floors:
152 uncertain significance, 91 likely benign, 21 benign, 21 conflicting classifications of pathogenicity, 20 likely pathogenic, 12 pathogenic/likely pathogenic, 12 pathogenic, 5 benign/likely benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 193419 | NM_019109.5(ALG1):c.15C>A (p.Cys5Ter) | ALG1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 194107 | NM_019109.5(ALG1):c.1188-2A>G | ALG1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 224118 | NM_019109.5(ALG1):c.1187+3A>G | ALG1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 30539 | NM_019109.5(ALG1):c.826C>T (p.Arg276Trp) | ALG1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 424339 | NM_019109.5(ALG1):c.1250_1251insTG (p.Ala418fs) | ALG1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 4724 | NM_019109.5(ALG1):c.773C>T (p.Ser258Leu) | ALG1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 690315 | NM_019109.5(ALG1):c.1312C>T (p.Arg438Trp) | ALG1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 690317 | NM_019109.5(ALG1):c.841G>T (p.Val281Phe) | ALG1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 690318 | NM_019109.5(ALG1):c.293C>T (p.Pro98Leu) | ALG1 | Pathogenic | criteria provided, single submitter |
| 690319 | NM_019109.5(ALG1):c.212C>T (p.Ser71Phe) | ALG1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 690322 | NM_019109.5(ALG1):c.1076C>T (p.Ser359Leu) | ALG1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 690325 | NM_019109.5(ALG1):c.1097T>A (p.Leu366Gln) | ALG1 | Pathogenic | criteria provided, single submitter |
| 690326 | NM_019109.5(ALG1):c.450C>A (p.Ser150Arg) | ALG1 | Pathogenic | criteria provided, single submitter |
| 95931 | NM_019109.5(ALG1):c.1079C>T (p.Ala360Val) | ALG1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 95934 | NM_019109.5(ALG1):c.1187+1G>A | ALG1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 521720 | NM_001382.4(DPAGT1):c.380_395dup (p.Ser133fs) | DPAGT1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 567578 | NM_001382.4(DPAGT1):c.26dup (p.Met9fs) | LOC126861360 | Pathogenic | criteria provided, single submitter |
| 625836 | NM_001367916.1(MAGT1):c.972A>C (p.Lys324Asn) | MAGT1 | Pathogenic | criteria provided, single submitter |
| 625837 | NM_001367916.1(MAGT1):c.895C>T (p.Arg299Ter) | MAGT1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1359807 | NM_002633.3(PGM1):c.1544G>A (p.Arg515Gln) | PGM1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 7706 | NM_000303.3(PMM2):c.422G>A (p.Arg141His) | PMM2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1184845 | NM_001164277.2(SLC37A4):c.1267C>T (p.Arg423Ter) | SLC37A4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 96125 | NM_024592.5(SRD5A3):c.57G>A (p.Trp19Ter) | SRD5A3 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 197351 | NM_024592.5(SRD5A3):c.603G>A (p.Trp201Ter) | SRD5A3-AS1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 690314 | NM_019109.5(ALG1):c.866A>G (p.Asp289Gly) | ALG1 | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 690316 | NM_019109.5(ALG1):c.1101C>G (p.His367Gln) | ALG1 | Likely pathogenic | no assertion criteria provided |
| 690321 | NM_019109.5(ALG1):c.342G>C (p.Leu114Phe) | ALG1 | Likely pathogenic | no assertion criteria provided |
| 690324 | NM_019109.5(ALG1):c.626T>G (p.Ile209Ser) | ALG1 | Likely pathogenic | no assertion criteria provided |
| 690327 | NM_019109.5(ALG1):c.209-1G>C | ALG1 | Likely pathogenic | no assertion criteria provided |
| 690328 | NM_019109.5(ALG1):c.1088G>C (p.Gly363Ala) | ALG1 | Likely pathogenic | no assertion criteria provided |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 37 · Orphanet: 20 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| ALG14 | Strong | Autosomal recessive | congenital myasthenic syndrome 15 | 5 |
| GALNT2 | Strong | Autosomal recessive | congenital disorder of glycosylation, type iit | 3 |
| MAN2B2 | Moderate | Autosomal recessive | congenital disorder of glycosylation | 2 |
| SSR3 | Moderate | Autosomal recessive | congenital disorder of glycosylation | |
| STX5 | Moderate | Autosomal recessive | congenital disorder of glycosylation | 2 |
| STT3B | Supportive | Autosomal recessive | STT3B-congenital disorder of glycosylation | 6 |
| ALG10 | Limited | Autosomal recessive | congenital disorder of glycosylation | 2 |
| FAM20B | Limited | Autosomal recessive | congenital disorder of glycosylation | 3 |
| GFUS | Limited | Autosomal recessive | congenital disorder of glycosylation | |
| MAN2A2 | Limited | Autosomal recessive | congenital disorder of glycosylation | 3 |
| OSTC | Limited | Autosomal recessive | congenital disorder of glycosylation | |
| POFUT1 | Limited | Autosomal recessive | congenital disorder of glycosylation | 8 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| MAN2B2 | Orphanet:695110 | MAN2B2-CDG |
| POFUT1 | Orphanet:79145 | Dowling-Degos disease |
| ALG14 | Orphanet:353327 | Congenital myasthenic syndrome with glycosylation defect |
| STT3B | Orphanet:370924 | STT3B-CDG |
| SLC35A2 | Orphanet:268973 | Isolated focal cortical dysplasia type Ia |
| SLC35A2 | Orphanet:356961 | SLC35A2-CDG |
| EDEM3 | Orphanet:695783 | EDEM3-CDG |
| ALG1 | Orphanet:79327 | ALG1-CDG |
| NUS1 | Orphanet:442835 | Non-specific early-onset epileptic encephalopathy |
| ALG3 | Orphanet:79321 | ALG3-CDG |
| SRD5A3 | Orphanet:324737 | SRD5A3-CDG |
| MAGT1 | Orphanet:317476 | XMEN |
| DPAGT1 | Orphanet:353327 | Congenital myasthenic syndrome with glycosylation defect |
| DPAGT1 | Orphanet:86309 | DPAGT1-CDG |
| TUSC3 | Orphanet:88616 | Autosomal recessive non-syndromic intellectual disability |
| ALG13 | Orphanet:324422 | ALG13-CDG |
| ALG13 | Orphanet:777 | X-linked non-syndromic intellectual disability |
| SLC37A4 | Orphanet:79259 | Glycogen storage disease due to glucose-6-phosphatase deficiency type Ib |
| PGM1 | Orphanet:319646 | PGM1-CDG |
| PMM2 | Orphanet:79318 | PMM2-CDG |
Cohort genes → proteins
29 cohort genes, 28 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 29 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| SSR3 | HGNC:11325 | ENSG00000114850 | Q9UNL2 | Translocon-associated protein subunit gamma | gencc,clinvar |
| MAN2B2 | HGNC:29623 | ENSG00000013288 | Q9Y2E5 | Epididymis-specific alpha-mannosidase | gencc,clinvar |
| STX5 | HGNC:11440 | ENSG00000162236 | Q13190 | Syntaxin-5 | gencc |
| GFUS | HGNC:12390 | ENSG00000104522 | Q13630 | GDP-L-fucose synthase | gencc |
| POFUT1 | HGNC:14988 | ENSG00000101346 | Q9H488 | GDP-fucose protein O-fucosyltransferase 1 | gencc |
| FAM20B | HGNC:23017 | ENSG00000116199 | O75063 | Glycosaminoglycan xylosylkinase | gencc |
| ALG10 | HGNC:23162 | ENSG00000139133 | Q5BKT4 | Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase A | gencc |
| OSTC | HGNC:24448 | ENSG00000198856 | Q9NRP0 | Oligosaccharyltransferase complex subunit OSTC | gencc |
| ALG14 | HGNC:28287 | ENSG00000172339 | Q96F25 | UDP-N-acetylglucosamine transferase subunit ALG14 | gencc |
| STT3B | HGNC:30611 | ENSG00000163527 | Q8TCJ2 | Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit STT3B | gencc |
| GALNT2 | HGNC:4124 | ENSG00000143641 | Q10471 | Polypeptide N-acetylgalactosaminyltransferase 2 | gencc |
| MAN2A2 | HGNC:6825 | ENSG00000196547 | P49641 | Alpha-mannosidase 2x | gencc |
| RPN2 | HGNC:10382 | ENSG00000118705 | P04844 | Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit 2 | clinvar |
| SLC35A2 | HGNC:11022 | ENSG00000102100 | P78381 | UDP-galactose translocator | clinvar |
| CTNNBL1 | HGNC:15879 | ENSG00000132792 | Q8WYA6 | Beta-catenin-like protein 1 | clinvar |
| MROH8 | HGNC:16125 | ENSG00000101353 | Q9H579 | Protein MROH8 | clinvar |
| EDEM3 | HGNC:16787 | ENSG00000116406 | Q9BZQ6 | ER degradation-enhancing alpha-mannosidase-like protein 3 | clinvar |
| ALG1 | HGNC:18294 | ENSG00000033011 | Q9BT22 | Chitobiosyldiphosphodolichol beta-mannosyltransferase | clinvar |
| NUS1 | HGNC:21042 | ENSG00000153989 | Q96E22 | Dehydrodolichyl diphosphate synthase complex subunit NUS1 | clinvar |
| ALG3 | HGNC:23056 | ENSG00000214160 | Q92685 | Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase | clinvar |
| SRD5A3 | HGNC:25812 | ENSG00000128039 | Q9H8P0 | Polyprenal reductase | clinvar |
| MAGT1 | HGNC:28880 | ENSG00000102158 | Q9H0U3 | Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit MAGT1 | clinvar |
| DPAGT1 | HGNC:2995 | ENSG00000172269 | Q9H3H5 | UDP-N-acetylglucosamine–dolichyl-phosphate N-acetylglucosaminephosphotransferase | clinvar |
| TUSC3 | HGNC:30242 | ENSG00000104723 | Q13454 | Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit TUSC3 | clinvar |
| ALG13 | HGNC:30881 | ENSG00000101901 | Q9NP73 | UDP-N-acetylglucosamine transferase subunit ALG13 | clinvar |
| SLC37A4 | HGNC:4061 | ENSG00000137700 | O43826 | Glucose-6-phosphate exchanger SLC37A4 | clinvar |
| SRD5A3-AS1 | HGNC:44138 | ENSG00000249700 | SRD5A3 antisense RNA 1 | clinvar | |
| PGM1 | HGNC:8905 | ENSG00000079739 | P36871 | Phosphoglucomutase-1 | clinvar |
| PMM2 | HGNC:9115 | ENSG00000140650 | O15305 | Phosphomannomutase 2 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| SSR3 | Translocon-associated protein subunit gamma | TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. |
| MAN2B2 | Epididymis-specific alpha-mannosidase | Specifically cleaves terminal alpha 1,6-linked mannose residues on Man3GlcNAc and Man2GlcNAc core oligosaccharides generated by N-glycan degradation pathways, having little activity, if any, on larger mannose oligosaccharides. |
| STX5 | Syntaxin-5 | Mediates endoplasmic reticulum to Golgi transport. |
| GFUS | GDP-L-fucose synthase | Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. |
| POFUT1 | GDP-fucose protein O-fucosyltransferase 1 | Catalyzes the reaction that attaches fucose through an O-glycosidic linkage to a conserved serine or threonine residue found in the consensus sequence C2-X(4,5)-[S/T]-C3 of EGF domains, where C2 and C3 are the second and third conserved cy… |
| FAM20B | Glycosaminoglycan xylosylkinase | Responsible for the 2-O-phosphorylation of xylose in the glycosaminoglycan-protein linkage region of proteoglycans thereby regulating the amount of mature GAG chains. |
| ALG10 | Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase A | Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. |
| OSTC | Oligosaccharyltransferase complex subunit OSTC | Subunit of STT3A-containing oligosaccharyl transferase (OST-A) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue wit… |
| ALG14 | UDP-N-acetylglucosamine transferase subunit ALG14 | Part of the UDP-N-acetylglucosamine transferase complex that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. |
| STT3B | Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit STT3B | Catalytic subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within a… |
| GALNT2 | Polypeptide N-acetylgalactosaminyltransferase 2 | Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. |
| MAN2A2 | Alpha-mannosidase 2x | Catalyzes the first committed step in the biosynthesis of complex N-glycans. |
| RPN2 | Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit 2 | Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Se… |
| SLC35A2 | UDP-galactose translocator | Transports uridine diphosphate galactose (UDP-galactose) from the cytosol into the Golgi apparatus, functioning as an antiporter that exchanges UDP-galactose for UMP. |
| CTNNBL1 | Beta-catenin-like protein 1 | Component of the PRP19-CDC5L complex that forms an integral part of the spliceosome and is required for activating pre-mRNA splicing. |
| EDEM3 | ER degradation-enhancing alpha-mannosidase-like protein 3 | Involved in endoplasmic reticulum-associated degradation (ERAD). |
| ALG1 | Chitobiosyldiphosphodolichol beta-mannosyltransferase | Mannosyltransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. |
| NUS1 | Dehydrodolichyl diphosphate synthase complex subunit NUS1 | With DHDDS, forms the dehydrodolichyl diphosphate synthase (DDS) complex, an essential component of the dolichol monophosphate (Dol-P) biosynthetic machinery. |
| ALG3 | Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase | Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. |
| SRD5A3 | Polyprenal reductase | Plays a key role in early steps of protein N-linked glycosylation by being involved in the conversion of polyprenol into dolichol. |
| MAGT1 | Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit MAGT1 | Accessory component of the STT3B-containing form of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an… |
| DPAGT1 | UDP-N-acetylglucosamine–dolichyl-phosphate N-acetylglucosaminephosphotransferase | UDP-N-acetylglucosamine–dolichyl-phosphate N-acetylglucosaminephosphotransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. |
| TUSC3 | Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit TUSC3 | Acts as accessory component of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consens… |
| ALG13 | UDP-N-acetylglucosamine transferase subunit ALG13 | Catalytic subunit of the UDP-N-acetylglucosamine transferase complex that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. |
| SLC37A4 | Glucose-6-phosphate exchanger SLC37A4 | Inorganic phosphate and glucose-6-phosphate antiporter of the endoplasmic reticulum. |
| PGM1 | Phosphoglucomutase-1 | Catalyzes the reversible isomerization of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate. |
| PMM2 | Phosphomannomutase 2 | Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions. |
Protein-family classification
Druggable: 14 · Difficult: 0 · Unknown: 15 · Druggable fraction: 0.48
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Enzyme (other) | 13 | 5.4× | 5e-07 |
| Transporter | 1 | 2.7× | 0.470 |
| Other/Unknown | 15 | 0.9× | 0.737 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| SSR3 | Other/Unknown | no | SSR3 | |
| MAN2B2 | Other/Unknown | no | Glyco_hydro_38_N, Gal_mutarotase_sf_dom, Glyco_hydro/deAcase_b/a-brl | |
| STX5 | Other/Unknown | no | T_SNARE_dom, Syntaxin/epimorphin_CS, SNARE | |
| GFUS | Other/Unknown | no | Epimerase_deHydtase, GDP_fucose/colitose_synth, NAD(P)-bd_dom_sf | |
| POFUT1 | Enzyme (other) | yes | 2.4.1.221 | GDP-Fuc_O-FucTrfase, POFUT1 |
| FAM20B | Other/Unknown | no | FAM20_C, FAM20 | |
| ALG10 | Enzyme (other) | yes | 2.4.1.256 | Alg10 |
| OSTC | Enzyme (other) | yes | 2.4.99.18 | MAGT1/OST3/OST6, OSTC |
| ALG14 | Other/Unknown | no | Oligosacch_biosynth_Alg14 | |
| STT3B | Enzyme (other) | yes | 2.4.99.18 | Oligo_trans_STT3, STT3_N, STT3-PglB_core |
| GALNT2 | Enzyme (other) | yes | 2.4.1.41 | Ricin_B_lectin, Glyco_trans_2-like, Nucleotide-diphossugar_trans |
| MAN2A2 | Other/Unknown | no | Glyco_hydro_38_N, Gal_mutarotase_sf_dom, Glyco_hydro/deAcase_b/a-brl | |
| RPN2 | Enzyme (other) | yes | 2.4.99.18 | Swp1, Ribophorin_II_N, Ribophorin_II_3rd |
| SLC35A2 | Other/Unknown | no | Nuc_sug_transpt, EmrE-like | |
| CTNNBL1 | Other/Unknown | no | ARM-like, CTNNBL1_N, ARM-type_fold | |
| MROH8 | Other/Unknown | no | ARM-type_fold, Maestro_heat-like_prot, Maestro-like_HEAT | |
| EDEM3 | Other/Unknown | no | Glyco_hydro_47, PA_domain, 6hp_glycosidase-like_sf | |
| ALG1 | Enzyme (other) | yes | 2.4.1.142 | Glyco_trans_1, ALG1-like |
| NUS1 | Enzyme (other) | yes | 2.5.1.87 | UPP_synth-like, UPP_synth-like_sf, Nus1/NgBR |
| ALG3 | Enzyme (other) | yes | 2.4.1.258 | Glycosyltransferase_ALG3 |
| SRD5A3 | Enzyme (other) | yes | 1.3.1.22 | 3-oxo-5_a-steroid_4-DH_C, Dfg10/SRD5A3 |
| MAGT1 | Other/Unknown | no | MAGT1/OST3/OST6, Thioredoxin-like_sf | |
| DPAGT1 | Enzyme (other) | yes | 2.7.8.15 | Glycosyl_transferase_4, GPT, DPAGT1_ins |
| TUSC3 | Other/Unknown | no | MAGT1/OST3/OST6, Thioredoxin-like_sf | |
| ALG13 | Other/Unknown | no | Tudor, OTU_dom, Glyco_trans_28_C | |
| SLC37A4 | Transporter | yes | Sugar_P_transporter, MFS, MFS_dom | |
| SRD5A3-AS1 | Other/Unknown | no | ||
| PGM1 | Enzyme (other) | yes | 5.4.2.2 | Alpha-D-phosphohexomutase_SF, A-D-PHexomutase_a/b/a-I, A-D-PHexomutase_a/b/a-II |
| PMM2 | Enzyme (other) | yes | 5.4.2.8 | PMM, HAD-SF_hydro_IIB, HAD_sf |
Expression context
Cohort genes with no expression data: 0.
28 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 29 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| stromal cell of endometrium | 7 |
| body of pancreas | 4 |
| calcaneal tendon | 3 |
| corpus epididymis | 3 |
| left testis | 3 |
| right testis | 3 |
| descending thoracic aorta | 2 |
| bone marrow cell | 2 |
| adrenal tissue | 2 |
| primordial germ cell in gonad | 2 |
| islet of Langerhans | 2 |
| tibia | 2 |
| jejunal mucosa | 2 |
| pylorus | 2 |
| mucosa of transverse colon | 2 |
| right lobe of liver | 2 |
| palpebral conjunctiva | 2 |
| tendon of biceps brachii | 1 |
| blood | 1 |
| granulocyte | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| SSR3 | 279 | ubiquitous | marker | body of pancreas, stromal cell of endometrium, calcaneal tendon |
| MAN2B2 | 283 | ubiquitous | marker | tendon of biceps brachii, stromal cell of endometrium, descending thoracic aorta |
| STX5 | 143 | ubiquitous | marker | bone marrow cell, blood, granulocyte |
| GFUS | 134 | ubiquitous | marker | body of stomach, skin of abdomen, esophagus mucosa |
| POFUT1 | 160 | ubiquitous | marker | stromal cell of endometrium, ventricular zone, adrenal tissue |
| FAM20B | 294 | ubiquitous | marker | lateral nuclear group of thalamus, Brodmann (1909) area 10, saphenous vein |
| ALG10 | 172 | ubiquitous | yes | primordial germ cell in gonad, male germ line stem cell (sensu Vertebrata) in testis, bone marrow cell |
| OSTC | 254 | ubiquitous | marker | stromal cell of endometrium, islet of Langerhans, tibia |
| ALG14 | 235 | ubiquitous | marker | corpus epididymis, jejunal mucosa, colonic mucosa |
| STT3B | 263 | ubiquitous | marker | ileal mucosa, cardiac muscle of right atrium, upper arm skin |
| GALNT2 | 285 | ubiquitous | marker | descending thoracic aorta, thoracic aorta, ascending aorta |
| MAN2A2 | 293 | ubiquitous | marker | right hemisphere of cerebellum, tibial nerve, sural nerve |
| RPN2 | 303 | ubiquitous | marker | corpus epididymis, pylorus, placenta |
| SLC35A2 | 277 | ubiquitous | marker | secondary oocyte, bronchial epithelial cell, epithelium of bronchus |
| CTNNBL1 | 280 | ubiquitous | marker | left testis, right testis, spleen |
| MROH8 | 174 | ubiquitous | marker | right testis, left testis, primordial germ cell in gonad |
| EDEM3 | 280 | ubiquitous | marker | pylorus, mucosa of sigmoid colon, jejunal mucosa |
| ALG1 | 185 | ubiquitous | marker | stromal cell of endometrium, buccal mucosa cell, body of pancreas |
| NUS1 | 255 | broad | marker | endometrium, tibia, islet of Langerhans |
| ALG3 | 208 | ubiquitous | marker | mucosa of transverse colon, stromal cell of endometrium, right lobe of liver |
| SRD5A3 | 254 | ubiquitous | marker | palpebral conjunctiva, gall bladder, olfactory segment of nasal mucosa |
| MAGT1 | 282 | ubiquitous | marker | palpebral conjunctiva, corpus epididymis, esophagus squamous epithelium |
| DPAGT1 | 271 | ubiquitous | marker | mucosa of transverse colon, body of pancreas, right adrenal gland |
| TUSC3 | 266 | ubiquitous | marker | type B pancreatic cell, cortical plate, stromal cell of endometrium |
| ALG13 | 287 | ubiquitous | marker | calcaneal tendon, adrenal tissue, right uterine tube |
| SLC37A4 | 134 | ubiquitous | marker | right lobe of liver, liver, duodenum |
| SRD5A3-AS1 | 162 | tissue_specific | marker | sperm, left testis, right testis |
| PGM1 | 292 | ubiquitous | marker | skeletal muscle tissue of rectus abdominis, biceps brachii, vastus lateralis |
| PMM2 | 139 | ubiquitous | marker | body of pancreas, calcaneal tendon, rectum |
Protein interactions among cohort
Intra-cohort edges: 34.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| GFUS | 3,199 |
| RPN2 | 3,035 |
| STX5 | 2,669 |
| STT3B | 2,615 |
| PGM1 | 2,366 |
| CTNNBL1 | 2,346 |
| ALG1 | 2,187 |
| ALG13 | 2,071 |
| NUS1 | 2,058 |
| PMM2 | 2,002 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ALG1 | ALG13 | string_interaction |
| ALG1 | ALG14 | string_interaction |
| ALG1 | ALG3 | string_interaction |
| ALG1 | DPAGT1 | string_interaction |
| ALG1 | PMM2 | string_interaction |
| ALG10 | ALG3 | string_interaction |
| ALG10 | DPAGT1 | string_interaction |
| ALG13 | ALG14 | string_interaction |
| ALG13 | ALG3 | string_interaction |
| ALG13 | DPAGT1 | string_interaction |
| ALG14 | ALG3 | string_interaction |
| ALG14 | DPAGT1 | string_interaction |
| ALG3 | DPAGT1 | string_interaction |
| ALG3 | PMM2 | string_interaction |
| DPAGT1 | PMM2 | string_interaction |
| DPAGT1 | SRD5A3 | string_interaction |
| EDEM3 | RPN2 | biogrid_interaction |
| EDEM3 | STT3B | biogrid_interaction |
| GALNT2 | STX5 | intact |
| GFUS | POFUT1 | string_interaction |
| MAGT1 | OSTC | string_interaction |
| MAGT1 | RPN2 | intact, string_interaction |
| MAGT1 | SSR3 | biogrid_interaction |
| MAGT1 | STT3B | biogrid_interaction, string_interaction |
| NUS1 | SRD5A3 | string_interaction |
| OSTC | RPN2 | string_interaction |
| OSTC | SSR3 | string_interaction |
| OSTC | STT3B | string_interaction |
| OSTC | TUSC3 | string_interaction |
| PMM2 | SRD5A3 | string_interaction |
| RPN2 | STT3B | intact, string_interaction |
| RPN2 | TUSC3 | biogrid_interaction, intact, string_interaction |
| SSR3 | STT3B | string_interaction |
| STT3B | TUSC3 | intact, string_interaction |
Structural data
PDB: 16 · AlphaFold-only: 12 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| SLC37A4 | O43826 | 25 |
| PGM1 | P36871 | 16 |
| GALNT2 | Q10471 | 13 |
| CTNNBL1 | Q8WYA6 | 9 |
| NUS1 | Q96E22 | 9 |
| DPAGT1 | Q9H3H5 | 8 |
| PMM2 | O15305 | 7 |
| RPN2 | P04844 | 6 |
| GFUS | Q13630 | 5 |
| OSTC | Q9NRP0 | 5 |
| TUSC3 | Q13454 | 4 |
| SSR3 | Q9UNL2 | 3 |
| POFUT1 | Q9H488 | 2 |
| STX5 | Q13190 | 1 |
| STT3B | Q8TCJ2 | 1 |
| MAGT1 | Q9H0U3 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| ALG10 | Q5BKT4 | 93.51 |
| ALG1 | Q9BT22 | 93.24 |
| FAM20B | O75063 | 93.14 |
| MAN2B2 | Q9Y2E5 | 91.55 |
| MAN2A2 | P49641 | 91.27 |
| ALG14 | Q96F25 | 91.06 |
| SRD5A3 | Q9H8P0 | 89.07 |
| ALG3 | Q92685 | 89.05 |
| SLC35A2 | P78381 | 80.59 |
| EDEM3 | Q9BZQ6 | 78.50 |
| MROH8 | Q9H579 | 74.20 |
| ALG13 | Q9NP73 | 54.42 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 85. Enrichment computed across 29 evidence-associated genes (26 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 26 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Asparagine N-linked glycosylation | 13 | 30.1× | 4e-15 | RPN2, STX5, ALG1, ALG3, ALG10, OSTC, SRD5A3, ALG14 (+5 more) |
| Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein | 7 | 55.9× | 1e-09 | ALG1, ALG3, ALG10, SRD5A3, ALG14, DPAGT1, ALG13 |
| PD-L1(CD274) glycosylation and translocation to plasma membrane | 5 | 99.8× | 3e-08 | RPN2, OSTC, MAGT1, TUSC3, STT3B |
| Maturation of spike protein | 5 | 51.1× | 8e-07 | RPN2, OSTC, MAGT1, TUSC3, STT3B |
| Diseases associated with N-glycosylation of proteins | 4 | 97.6× | 1e-06 | ALG1, ALG3, ALG14, ALG13 |
| Maturation of DENV proteins | 5 | 40.7× | 2e-06 | RPN2, OSTC, MAGT1, TUSC3, STT3B |
| Post-translational protein modification | 10 | 7.4× | 4e-06 | RPN2, STX5, ALG1, ALG3, ALG10, SRD5A3, ALG14, MAGT1 (+2 more) |
| Diseases of glycosylation | 5 | 25.2× | 1e-05 | ALG1, ALG3, SRD5A3, ALG14, ALG13 |
| Metabolism of proteins | 11 | 5.2× | 2e-05 | SSR3, RPN2, STX5, ALG1, ALG3, ALG10, SRD5A3, ALG14 (+3 more) |
| Defective ALG14 causes ALG14-CMS | 2 | 439.2× | 4e-05 | ALG14, ALG13 |
| Diseases of metabolism | 5 | 15.5× | 1e-04 | ALG1, ALG3, SRD5A3, ALG14, ALG13 |
| Synthesis of dolichyl-phosphate | 2 | 125.5× | 7e-04 | NUS1, SRD5A3 |
| Disease | 8 | 4.0× | 0.003 | RPN2, SLC35A2, ALG1, ALG3, SRD5A3, ALG14, MAGT1, ALG13 |
| Defective PMM2 causes PMM2-CDG | 1 | 439.2× | 0.009 | PMM2 |
| Defective ALG1 causes CDG-1k | 1 | 439.2× | 0.009 | ALG1 |
| Defective ALG3 causes CDG-1d | 1 | 439.2× | 0.009 | ALG3 |
| Defective SRD5A3 causes SRD5A3-CDG, KHRZ | 1 | 439.2× | 0.009 | SRD5A3 |
| Defective PGM1 causes PGM1-CDG | 1 | 439.2× | 0.009 | PGM1 |
| Defective SLC35A2 causes congenital disorder of glycosylation 2M (CDG2M) | 1 | 439.2× | 0.009 | SLC35A2 |
| Miscellaneous transport and binding events | 2 | 33.8× | 0.009 | MAGT1, TUSC3 |
| Translation of Structural Proteins | 2 | 31.4× | 0.009 | RPN2, MAGT1 |
| Regulation of CDH1 posttranslational processing and trafficking to plasma membrane | 2 | 25.8× | 0.010 | RPN2, OSTC |
| Late SARS-CoV-2 Infection Events | 2 | 22.5× | 0.013 | RPN2, MAGT1 |
| Defective DPAGT1 causes CDG-1j, CMSTA2 | 1 | 219.6× | 0.014 | DPAGT1 |
| Defective DHDDS causes RP59 | 1 | 219.6× | 0.014 | NUS1 |
| Diseases associated with glycosylation precursor biosynthesis | 1 | 219.6× | 0.014 | SRD5A3 |
| Intra-Golgi traffic | 2 | 20.0× | 0.014 | STX5, MAN2A2 |
| Lysosomal oligosaccharide catabolism | 1 | 109.8× | 0.028 | MAN2B2 |
| Pre-NOTCH Processing in the Endoplasmic Reticulum | 1 | 73.2× | 0.037 | POFUT1 |
| Synthesis of GDP-mannose | 1 | 73.2× | 0.037 | PMM2 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 27 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| protein N-linked glycosylation | 12 | 117.0× | 4e-21 | RPN2, ALG1, ALG3, ALG10, OSTC, ALG14, MAGT1, DPAGT1 (+4 more) |
| dolichol-linked oligosaccharide biosynthetic process | 7 | 218.4× | 4e-14 | ALG1, ALG3, ALG10, SRD5A3, ALG14, DPAGT1, ALG13 |
| obsolete protein N-linked glycosylation via asparagine | 4 | 99.9× | 2e-06 | OSTC, MAGT1, TUSC3, STT3B |
| mannose metabolic process | 3 | 234.1× | 4e-06 | MAN2B2, MAN2A2, PMM2 |
| magnesium ion transmembrane transport | 2 | 312.1× | 2e-04 | MAGT1, TUSC3 |
| dolichyl monophosphate biosynthetic process | 2 | 138.7× | 0.001 | NUS1, SRD5A3 |
| magnesium ion transport | 2 | 89.2× | 0.003 | MAGT1, TUSC3 |
| glycoprotein catabolic process | 2 | 78.0× | 0.003 | MAN2B2, STT3B |
| polyprenol catabolic process | 1 | 624.1× | 0.014 | SRD5A3 |
| dolichyl diphosphate biosynthetic process | 1 | 312.1× | 0.016 | NUS1 |
| somatic diversification of immunoglobulins | 1 | 312.1× | 0.016 | CTNNBL1 |
| obsolete GDP-D-mannose biosynthetic process from fructose-6-phosphate | 1 | 312.1× | 0.016 | PMM2 |
| UDP-galactose transmembrane transport | 1 | 312.1× | 0.016 | SLC35A2 |
| ubiquitin-dependent glycoprotein ERAD pathway | 1 | 312.1× | 0.016 | EDEM3 |
| negative regulation of proteoglycan biosynthetic process | 1 | 312.1× | 0.016 | FAM20B |
| gluconeogenesis | 2 | 24.0× | 0.016 | SLC37A4, PGM1 |
| cognition | 2 | 21.2× | 0.019 | MAGT1, TUSC3 |
| ‘de novo’ GDP-L-fucose biosynthetic process | 1 | 208.1× | 0.020 | GFUS |
| obsolete GDP-mannose biosynthetic process from mannose | 1 | 208.1× | 0.020 | PMM2 |
| glucose metabolic process | 2 | 18.9× | 0.020 | SLC37A4, PGM1 |
| regulation of intracellular cholesterol transport | 1 | 156.0× | 0.024 | NUS1 |
| beta-D-galactose catabolic process via UDP-galactose, Leloir pathway | 1 | 124.8× | 0.027 | PGM1 |
| protein O-linked glycosylation via fucose | 1 | 124.8× | 0.027 | POFUT1 |
| GDP-mannose biosynthetic process | 1 | 104.0× | 0.027 | PMM2 |
| glucose-6-phosphate transport | 1 | 104.0× | 0.027 | SLC37A4 |
| GDP-mannose metabolic process | 1 | 104.0× | 0.027 | GFUS |
| Golgi disassembly | 1 | 104.0× | 0.027 | STX5 |
| ERAD pathway | 2 | 13.4× | 0.027 | EDEM3, STT3B |
| fucose metabolic process | 1 | 89.2× | 0.029 | POFUT1 |
| transmembrane transport | 2 | 12.5× | 0.029 | MAGT1, TUSC3 |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 1 · Phased (≥1): 2 · Undrugged: 27
Druggability breadth: 14 of 29 evidence-associated genes (48%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| GALNT2 | 2 | 2 |
| PMM2 | 1 | 3 |
| SSR3 | 0 | 0 |
| MAN2B2 | 0 | 0 |
| STX5 | 0 | 0 |
| GFUS | 0 | 0 |
| POFUT1 | 0 | 0 |
| FAM20B | 0 | 0 |
| ALG10 | 0 | 0 |
| OSTC | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| EBSELEN | 3 | PMM2 |
| GALLIC ACID | 2 | GALNT2 |
| ELLAGIC ACID | 2 | GALNT2 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 13.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| GALNT2 | 19 | Binding:19 |
| RPN2 | 7 | Binding:7 |
| DPAGT1 | 7 | Binding:7 |
| SLC37A4 | 5 | Binding:5 |
| PMM2 | 3 | Binding:3 |
| MAN2B2 | 2 | Binding:2 |
| STT3B | 2 | Binding:2 |
| SSR3 | 1 | Binding:1 |
| OSTC | 1 | Binding:1 |
| SLC35A2 | 1 | ADMET:1 |
| CTNNBL1 | 1 | Binding:1 |
| ALG1 | 1 | Binding:1 |
| ALG3 | 1 | Binding:1 |
| SRD5A3 | 1 | Binding:1 |
| MAGT1 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| POFUT1 | 2.4.1.221 | peptide-O-fucosyltransferase |
| ALG10 | 2.4.1.256 | dolichyl-P-Glc:Glc2Man9GlcNAc2-PP-dolichol alpha-1,2-glucosyltransferase |
| OSTC | 2.4.99.18 | dolichyl-diphosphooligosaccharide-protein glycotransferase |
| STT3B | 2.4.99.18 | dolichyl-diphosphooligosaccharide-protein glycotransferase |
| GALNT2 | 2.4.1.41 | polypeptide N-acetylgalactosaminyltransferase |
| RPN2 | 2.4.99.18 | dolichyl-diphosphooligosaccharide-protein glycotransferase |
| ALG1 | 2.4.1.142 | chitobiosyldiphosphodolichol beta-mannosyltransferase |
| NUS1 | 2.5.1.87 | ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] |
| ALG3 | 2.4.1.258 | dolichyl-P-Man:Man5GlcNAc2-PP-dolichol alpha-1,3-mannosyltransferase |
| SRD5A3 | 1.3.1.22, 1.3.1.94, 1.3.1.B13 | 3-oxo-5alpha-steroid 4-dehydrogenase (NADP+), polyprenal reductase, |
| DPAGT1 | 2.7.8.15 | UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase |
| PGM1 | 5.4.2.2 | phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) |
| PMM2 | 5.4.2.8 | phosphomannomutase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 28; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
3 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| EBSELEN | 3 | PMM2 |
| GALLIC ACID | 2 | GALNT2 |
| ELLAGIC ACID | 2 | GALNT2 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 2 | GALNT2, PMM2 |
| C | Druggable family + PDB, no drug | 8 | POFUT1, OSTC, STT3B, RPN2, NUS1, DPAGT1, SLC37A4, PGM1 |
| D | Druggable family + AlphaFold only, no drug | 4 | ALG10, ALG1, ALG3, SRD5A3 |
| E | Difficult family or no structure, no drug | 15 | SSR3, MAN2B2, STX5, GFUS, FAM20B, ALG14, MAN2A2, SLC35A2, CTNNBL1, MROH8 (+5 more) |
Undrugged target profiles
27 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| SRD5A3 | 1 | PMM2 |
| DPAGT1 | 7 | PMM2 |
| SSR3 | 1 | — |
| MAN2B2 | 2 | — |
| STX5 | 0 | — |
| GFUS | 0 | — |
| POFUT1 | 0 | — |
| FAM20B | 0 | — |
| ALG10 | 0 | — |
| OSTC | 1 | — |
| ALG14 | 0 | — |
| STT3B | 2 | — |
| MAN2A2 | 0 | — |
| RPN2 | 7 | — |
| SLC35A2 | 1 | — |
| CTNNBL1 | 1 | — |
| MROH8 | 0 | — |
| EDEM3 | 0 | — |
| ALG1 | 1 | — |
| NUS1 | 0 | — |
| ALG3 | 1 | — |
| MAGT1 | 1 | — |
| TUSC3 | 0 | — |
| ALG13 | 0 | — |
| SLC37A4 | 5 | — |
| SRD5A3-AS1 | 0 | — |
| PGM1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 9.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 8 |
| PHASE1 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT07572825 | PHASE1 | NOT_YET_RECRUITING | Assessing the Safety and Tolerability of NMN in DHDDS-CDG |
| NCT02089789 | Not specified | RECRUITING | Clinical and Basic Investigations Into Known and Suspected Congenital Disorders of Glycosylation |
| NCT04199000 | Not specified | RECRUITING | Clinical and Basic Investigations Into Congenital Disorders of Glycosylation |
| NCT02503267 | Not specified | UNKNOWN | Incidence and Consequences of Disorders of Glycosylation in Patients With Conotruncal and Septal Heart Defects |
| NCT02955264 | Not specified | COMPLETED | Using D-Galactose as a Food Supplement in Congenital Disorders of Glycosylation |
| NCT03250728 | Not specified | COMPLETED | Role of the Endothelium in Stroke-like Episode Among CDG Patients |
| NCT03560570 | Not specified | COMPLETED | Study of Hemostasis in Patients With Congenital Disorder of Glycosylation |
| NCT04198987 | Not specified | COMPLETED | Dietary Monosaccharide Supplementation in Patients With Congenital Disorders of Glycosylation |
| NCT04201067 | Not specified | COMPLETED | Large-Scale Metabolomic Profiling for the Diagnosis of Inborn Errors of Metabolism |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| GALACTOSE | 3 | 1 |
| D-GALACTOSE | 0 | 1 |