Congenital heart defects, multiple types
diseaseOn this page
Also known as CHTD
Summary
Congenital heart defects, multiple types (MONDO:0000119) is a disease (an umbrella term covering 8 Mondo subtypes) caused by RBFOX2 (GenCC Strong), with 13 cohort genes.
At a glance
- Causal gene: RBFOX2 (GenCC Strong)
- Umbrella term: 8 Mondo subtypes
- Cohort genes: 13
- ClinVar variants: 4
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | congenital heart defects, multiple types |
| Mondo ID | MONDO:0000119 |
| Is cancer (heuristic) | no |
Also known as: CHTD
Data availability: 4 ClinVar variants · 11 GenCC gene-disease records.
Disease family
An umbrella term covering 8 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › cardiovascular disorder › heart disorder › congenital heart disease › congenital heart defects, multiple types
Related subtypes (22): heart septal defect, tetralogy of fallot, heart defects-limb shortening syndrome, tricuspid atresia, patent ductus arteriosus, coronary artery congenital malformation, mitral atresia disorder, persistent truncus arteriosus, dextro-looped transposition of the great arteries, aortic valve atresia, congenital pulmonary veins anomaly, mehta lewis patton syndrome, structural congenital heart disease, multiple types - GATA4, GATA6-related congenital heart disease with or without pancreatic agenesis or neonatal diabetes, GATA5-related congenital heart defects, RBFOX2-related congenital heart disorder, syndromic congenital heart disease, ACTC1-related distal arthrogryposis with congenital heart disease, HAND1 related congenital heart defect, HAND2 related congenital heart defect, TFAP2B-related congenital heart disease spectrum disorder, PLD1-related congenital heart disease
Subtypes (8): congenital heart defects, multiple types, 6, congenital heart defects, multiple types, 3, congenital heart defects, multiple types, 2, congenital heart defects, multiple types, 4, congenital heart defects, multiple types, 5, MYH-6 related congenital heart defects, congenital heart defects, multiple types, 8, with or without heterotaxy, congenital heart defects, multiple types, 9
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
4 retrieved; paginated sample, class counts are floors:
3 uncertain significance, 1 pathogenic/likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 522571 | NM_001492.6(GDF1):c.1091T>C (p.Met364Thr) | CERS1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1508694 | NM_080473.5(GATA5):c.875G>A (p.Arg292Gln) | GATA5 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 1511689 | NM_080473.5(GATA5):c.664G>A (p.Val222Ile) | GATA5 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 3377369 | NM_080473.5(GATA5):c.209C>T (p.Ala70Val) | GATA5 | Uncertain significance | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 72 · Orphanet: 21 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| FGF10 | Strong | Autosomal dominant | congenital alveolar dysplasia due to FGF10 | 8 |
| PRKD1 | Strong | Autosomal dominant | congenital heart defects and ectodermal dysplasia | 14 |
| RBFOX2 | Strong | Autosomal dominant | congenital heart defects, multiple types | 3 |
| CITED2 | Moderate | Autosomal dominant | congenital heart defects, multiple types | 4 |
| HAND2 | Moderate | Autosomal dominant | HAND2 related congenital heart defect | 4 |
| SMAD6 | Supportive | Unknown | congenital radioulnar synostosis | 14 |
| ANKRD11 | Limited | Autosomal dominant | congenital heart defects, multiple types | 8 |
| ASB17 | Limited | Autosomal dominant | congenital heart defects, multiple types | |
| BMPR1A | Limited | Autosomal dominant | congenital heart defects, multiple types | 12 |
| DLC1 | Limited | Autosomal dominant | congenital heart defects, multiple types | 3 |
| MCTP2 | Limited | Autosomal dominant | congenital heart defects, multiple types |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| BMPR1A | Orphanet:157794 | Hereditary mixed polyposis syndrome |
| BMPR1A | Orphanet:329971 | Generalized juvenile polyposis/juvenile polyposis coli |
| BMPR1A | Orphanet:440437 | Familial colorectal cancer Type X |
| BMPR1A | Orphanet:79076 | Juvenile polyposis of infancy |
| CITED2 | Orphanet:101063 | Situs inversus totalis |
| CITED2 | Orphanet:3303 | Tetralogy of Fallot |
| CITED2 | Orphanet:99103 | Atrial septal defect, ostium secundum type |
| CITED2 | Orphanet:99105 | Atrial septal defect, sinus venosus type |
| ANKRD11 | Orphanet:2332 | KBG syndrome |
| ANKRD11 | Orphanet:261250 | 16q24.3 microdeletion syndrome |
| MCTP2 | Orphanet:1596 | Distal deletion 15q syndrome |
| FGF10 | Orphanet:2363 | Lacrimoauriculodentodigital syndrome |
| FGF10 | Orphanet:86815 | Aplasia of lacrimal and salivary glands |
| HAND2 | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| SMAD6 | Orphanet:402075 | Familial bicuspid aortic valve |
| PRKD1 | Orphanet:276145 | Malignant epithelial tumor of salivary glands |
| PRKD1 | Orphanet:708019 | Congenital heart defect-ectodermal dysplasia- brachydactyly-telangiectasia syndrome |
| CERS1 | Orphanet:424027 | Progressive myoclonic epilepsy type 8 |
| GATA5 | Orphanet:3303 | Tetralogy of Fallot |
| GATA5 | Orphanet:334 | Hereditary atrial fibrillation |
| GATA5 | Orphanet:402075 | Familial bicuspid aortic valve |
Cohort genes → proteins
13 cohort genes, 13 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 13 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| BMPR1A | HGNC:1076 | ENSG00000107779 | P36894 | Bone morphogenetic protein receptor type-1A | gencc |
| ASB17 | HGNC:19769 | ENSG00000154007 | Q8WXJ9 | Ankyrin repeat and SOCS box protein 17 | gencc |
| CITED2 | HGNC:1987 | ENSG00000164442 | Q99967 | Cbp/p300-interacting transactivator 2 | gencc |
| ANKRD11 | HGNC:21316 | ENSG00000167522 | Q6UB99 | Ankyrin repeat domain-containing protein 11 | gencc |
| MCTP2 | HGNC:25636 | ENSG00000140563 | Q6DN12 | Multiple C2 and transmembrane domain-containing protein 2 | gencc |
| DLC1 | HGNC:2897 | ENSG00000164741 | Q96QB1 | Rho GTPase-activating protein 7 | gencc |
| FGF10 | HGNC:3666 | ENSG00000070193 | O15520 | Fibroblast growth factor 10 | gencc |
| HAND2 | HGNC:4808 | ENSG00000164107 | P61296 | Heart- and neural crest derivatives-expressed protein 2 | gencc |
| SMAD6 | HGNC:6772 | ENSG00000137834 | O43541 | SMAD family member 6 | gencc |
| PRKD1 | HGNC:9407 | ENSG00000184304 | Q15139 | Serine/threonine-protein kinase D1 | gencc |
| RBFOX2 | HGNC:9906 | ENSG00000100320 | O43251 | RNA binding protein fox-1 homolog 2 | gencc |
| CERS1 | HGNC:14253 | ENSG00000223802 | P27544 | Ceramide synthase 1 | clinvar |
| GATA5 | HGNC:15802 | ENSG00000130700 | Q9BWX5 | Transcription factor GATA-5 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| BMPR1A | Bone morphogenetic protein receptor type-1A | On ligand binding, forms a receptor complex consisting of two type II and two type I transmembrane serine/threonine kinases. |
| ASB17 | Ankyrin repeat and SOCS box protein 17 | May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. |
| CITED2 | Cbp/p300-interacting transactivator 2 | Transcriptional coactivator of the p300/CBP-mediated transcription complex. |
| ANKRD11 | Ankyrin repeat domain-containing protein 11 | Chromatin regulator which modulates histone acetylation and gene expression in neural precursor cells. |
| MCTP2 | Multiple C2 and transmembrane domain-containing protein 2 | Might play a role in the development of cardiac outflow tract. |
| DLC1 | Rho GTPase-activating protein 7 | Functions as a GTPase-activating protein for the small GTPases RHOA, RHOB, RHOC and CDC42, terminating their downstream signaling. |
| FGF10 | Fibroblast growth factor 10 | Plays an important role in the regulation of embryonic development, cell proliferation and cell differentiation. |
| HAND2 | Heart- and neural crest derivatives-expressed protein 2 | Essential for cardiac morphogenesis, particularly for the formation of the right ventricle and of the aortic arch arteries. |
| SMAD6 | SMAD family member 6 | Transforming growth factor-beta superfamily receptors signaling occurs through the Smad family of intracellular mediators. |
| PRKD1 | Serine/threonine-protein kinase D1 | Serine/threonine-protein kinase that converts transient diacylglycerol (DAG) signals into prolonged physiological effects downstream of PKC, and is involved in the regulation of MAPK8/JNK1 and Ras signaling, Golgi membrane integrity and tr… |
| RBFOX2 | RNA binding protein fox-1 homolog 2 | RNA-binding protein that regulates alternative splicing events by binding to 5’-UGCAUGU-3’ elements. |
| CERS1 | Ceramide synthase 1 | Ceramide synthase that catalyzes the transfer of the acyl chain from acyl-CoA to a sphingoid base, with high selectivity toward stearoyl-CoA (octadecanoyl-CoA; C18:0-CoA). |
| GATA5 | Transcription factor GATA-5 | Transcription factor required during cardiovascular development. |
Protein-family classification
Druggable: 3 · Difficult: 4 · Unknown: 6 · Druggable fraction: 0.23
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Kinase | 2 | 4.3× | 0.390 |
| Scaffold/PPI | 2 | 2.7× | 0.428 |
| Transcription factor | 2 | 1.3× | 0.798 |
| Enzyme (other) | 1 | 0.9× | 0.837 |
| Other/Unknown | 6 | 0.8× | 0.837 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| BMPR1A | Kinase | yes | 2.7.10.2 | TGFB_receptor, Activin_recp, Prot_kinase_dom |
| ASB17 | Scaffold/PPI | no | SOCS_box, SOCS_box-like_dom_sf, Ankyrin_rpt-contain_sf | |
| CITED2 | Other/Unknown | no | CITED | |
| ANKRD11 | Scaffold/PPI | no | Ankyrin_rpt, Ankyrin_rpt-contain_sf, ANKRD11 | |
| MCTP2 | Other/Unknown | no | C2_dom, MCTP_C, C2_domain_sf | |
| DLC1 | Other/Unknown | no | RhoGAP_dom, SAM, START_lipid-bd_dom | |
| FGF10 | Other/Unknown | no | Fibroblast_GF_fam, IL1/FGF | |
| HAND2 | Transcription factor | no | bHLH_dom, HLH_DNA-bd_sf, E-box_TF_Regulators | |
| SMAD6 | Other/Unknown | no | SMAD_dom, MAD_homology1_Dwarfin-type, SMAD_FHA_dom_sf | |
| PRKD1 | Kinase | yes | 2.7.11.13 | Prot_kinase_dom, PH_domain, PKC_DAG/PE |
| RBFOX2 | Other/Unknown | no | RRM_dom, Nucleotide-bd_a/b_plait_sf, RBFOX1-3 | |
| CERS1 | Enzyme (other) | yes | 2.3.1.299 | TLC-dom, Lag1/Lac1-like |
| GATA5 | Transcription factor | no | Znf_GATA, GATA_N, Znf_NHR/GATA |
Expression context
Cohort genes with no expression data: 0.
10 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 13 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| secondary oocyte | 2 |
| stromal cell of endometrium | 2 |
| sural nerve | 2 |
| buccal mucosa cell | 2 |
| calcaneal tendon | 1 |
| saphenous vein | 1 |
| adult organism | 1 |
| male germ line stem cell (sensu Vertebrata) in testis | 1 |
| sperm | 1 |
| mucosa of stomach | 1 |
| type B pancreatic cell | 1 |
| tendon of biceps brachii | 1 |
| germinal epithelium of ovary | 1 |
| adrenal tissue | 1 |
| lower lobe of lung | 1 |
| endocervix | 1 |
| synovial joint | 1 |
| apex of heart | 1 |
| lower esophagus muscularis layer | 1 |
| muscle layer of sigmoid colon | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| BMPR1A | 284 | ubiquitous | marker | secondary oocyte, calcaneal tendon, saphenous vein |
| ASB17 | 24 | tissue_specific | yes | sperm, male germ line stem cell (sensu Vertebrata) in testis, adult organism |
| CITED2 | 284 | ubiquitous | marker | stromal cell of endometrium, type B pancreatic cell, mucosa of stomach |
| ANKRD11 | 278 | ubiquitous | marker | tendon of biceps brachii, sural nerve, stromal cell of endometrium |
| MCTP2 | 234 | broad | marker | germinal epithelium of ovary, secondary oocyte, buccal mucosa cell |
| DLC1 | 268 | ubiquitous | marker | adrenal tissue, lower lobe of lung, sural nerve |
| FGF10 | 169 | broad | marker | buccal mucosa cell, synovial joint, endocervix |
| HAND2 | 147 | broad | marker | muscle layer of sigmoid colon, apex of heart, lower esophagus muscularis layer |
| SMAD6 | 277 | ubiquitous | marker | right lung, renal glomerulus, metanephric glomerulus |
| PRKD1 | 239 | ubiquitous | marker | ventricular zone, seminal vesicle, thoracic aorta |
| RBFOX2 | 144 | ubiquitous | marker | cortical plate, embryo, ganglionic eminence |
| CERS1 | 177 | broad | yes | C1 segment of cervical spinal cord, right frontal lobe, spinal cord |
| GATA5 | 106 | broad | yes | ileal mucosa, left uterine tube, jejunal mucosa |
Protein interactions among cohort
Intra-cohort edges: 1.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| FGF10 | 4,233 |
| BMPR1A | 3,316 |
| GATA5 | 2,434 |
| ANKRD11 | 2,384 |
| RBFOX2 | 2,274 |
| PRKD1 | 2,131 |
| SMAD6 | 2,006 |
| HAND2 | 1,828 |
| CITED2 | 1,215 |
| DLC1 | 1,128 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| GATA5 | HAND2 | string_interaction |
Structural data
PDB: 6 · AlphaFold-only: 7 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| BMPR1A | P36894 | 11 |
| DLC1 | Q96QB1 | 7 |
| CITED2 | Q99967 | 4 |
| FGF10 | O15520 | 2 |
| MCTP2 | Q6DN12 | 1 |
| RBFOX2 | O43251 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| CERS1 | P27544 | 88.95 |
| ASB17 | Q8WXJ9 | 86.18 |
| SMAD6 | O43541 | 72.34 |
| PRKD1 | Q15139 | 68.99 |
| HAND2 | P61296 | 67.30 |
| GATA5 | Q9BWX5 | 59.91 |
| ANKRD11 | Q6UB99 | 39.44 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 56. Enrichment computed across 13 evidence-associated genes (11 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 11 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Signaling by BMP | 2 | 64.9× | 0.015 | BMPR1A, SMAD6 |
| Sphingolipid de novo biosynthesis | 2 | 51.9× | 0.015 | CERS1, PRKD1 |
| Transcriptional regulation by RUNX2 | 2 | 46.1× | 0.015 | HAND2, SMAD6 |
| TFAP2 (AP-2) family regulates transcription of other transcription factors | 1 | 259.6× | 0.044 | CITED2 |
| Signaling by TGFB family members | 2 | 21.0× | 0.044 | BMPR1A, SMAD6 |
| Regulation of gene expression in early pancreatic precursor cells | 1 | 129.8× | 0.053 | FGF10 |
| FGFR1b ligand binding and activation | 1 | 115.3× | 0.053 | FGF10 |
| FGFR2b ligand binding and activation | 1 | 103.8× | 0.053 | FGF10 |
| Regulation of gene expression by Hypoxia-inducible Factor | 1 | 86.5× | 0.053 | CITED2 |
| Activation of the TFAP2 (AP-2) family of transcription factors | 1 | 86.5× | 0.053 | CITED2 |
| FGFRL1 modulation of FGFR1 signaling | 1 | 79.9× | 0.053 | FGF10 |
| RUNX2 regulates bone development | 1 | 74.2× | 0.053 | SMAD6 |
| Developmental Lineage of Mammary Stem Cells | 1 | 69.2× | 0.053 | FGF10 |
| FOXO-mediated transcription of cell death genes | 1 | 64.9× | 0.053 | CITED2 |
| Activated point mutants of FGFR2 | 1 | 61.1× | 0.053 | FGF10 |
| Phospholipase C-mediated cascade: FGFR1 | 1 | 61.1× | 0.053 | FGF10 |
| Phospholipase C-mediated cascade; FGFR2 | 1 | 57.7× | 0.053 | FGF10 |
| Developmental Lineage of Multipotent Pancreatic Progenitor Cells | 1 | 54.6× | 0.053 | FGF10 |
| Downstream signaling of activated FGFR1 | 1 | 49.4× | 0.053 | FGF10 |
| PI-3K cascade:FGFR1 | 1 | 47.2× | 0.053 | FGF10 |
| SHC-mediated cascade:FGFR1 | 1 | 45.1× | 0.053 | FGF10 |
| PI-3K cascade:FGFR2 | 1 | 45.1× | 0.053 | FGF10 |
| SHC-mediated cascade:FGFR2 | 1 | 43.3× | 0.053 | FGF10 |
| FRS-mediated FGFR1 signaling | 1 | 41.5× | 0.053 | FGF10 |
| FRS-mediated FGFR2 signaling | 1 | 39.9× | 0.053 | FGF10 |
| FGFR2 alternative splicing | 1 | 38.5× | 0.053 | RBFOX2 |
| Cardiogenesis | 1 | 38.5× | 0.053 | HAND2 |
| Negative regulation of FGFR1 signaling | 1 | 33.5× | 0.057 | FGF10 |
| Negative regulation of FGFR2 signaling | 1 | 33.5× | 0.057 | FGF10 |
| PI3K Cascade | 1 | 24.7× | 0.073 | FGF10 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 13 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| odontogenesis of dentin-containing tooth | 4 | 92.6× | 3e-05 | BMPR1A, ANKRD11, FGF10, HAND2 |
| thymus development | 3 | 77.8× | 0.001 | CITED2, FGF10, HAND2 |
| outflow tract morphogenesis | 3 | 70.7× | 0.001 | BMPR1A, CITED2, HAND2 |
| positive regulation of gene expression | 5 | 14.9× | 0.001 | BMPR1A, GATA5, CITED2, HAND2, PRKD1 |
| mitral valve morphogenesis | 2 | 259.3× | 0.002 | BMPR1A, SMAD6 |
| negative regulation of gene expression | 4 | 21.2× | 0.002 | BMPR1A, GATA5, CITED2, HAND2 |
| angiogenesis | 4 | 19.2× | 0.002 | BMPR1A, FGF10, HAND2, PRKD1 |
| negative regulation of cardiac muscle hypertrophy | 2 | 172.8× | 0.003 | CERS1, GATA5 |
| positive regulation of transcription by RNA polymerase II | 6 | 6.9× | 0.004 | BMPR1A, GATA5, CITED2, FGF10, HAND2, PRKD1 |
| outflow tract septum morphogenesis | 2 | 99.7× | 0.006 | BMPR1A, SMAD6 |
| pituitary gland development | 2 | 99.7× | 0.006 | BMPR1A, FGF10 |
| cranial nerve morphogenesis | 1 | 1296.3× | 0.007 | CITED2 |
| neural plate mediolateral regionalization | 1 | 1296.3× | 0.007 | BMPR1A |
| embryonic genitalia morphogenesis | 1 | 1296.3× | 0.007 | FGF10 |
| regulation of activin receptor signaling pathway | 1 | 1296.3× | 0.007 | FGF10 |
| paraxial mesoderm structural organization | 1 | 1296.3× | 0.007 | BMPR1A |
| urothelial cell proliferation | 1 | 1296.3× | 0.007 | FGF10 |
| positive regulation of urothelial cell proliferation | 1 | 1296.3× | 0.007 | FGF10 |
| bronchiole morphogenesis | 1 | 1296.3× | 0.007 | FGF10 |
| mesenchymal-epithelial cell signaling involved in lung development | 1 | 1296.3× | 0.007 | FGF10 |
| fibroblast growth factor receptor signaling pathway involved in mammary gland specification | 1 | 1296.3× | 0.007 | FGF10 |
| submandibular salivary gland formation | 1 | 1296.3× | 0.007 | FGF10 |
| semicircular canal fusion | 1 | 1296.3× | 0.007 | FGF10 |
| lung proximal/distal axis specification | 1 | 1296.3× | 0.007 | FGF10 |
| positive regulation of cardiac endothelial to mesenchymal transition | 1 | 1296.3× | 0.007 | GATA5 |
| positive regulation of hair follicle cell proliferation | 1 | 1296.3× | 0.007 | FGF10 |
| cellular response to dithiothreitol | 1 | 1296.3× | 0.007 | CERS1 |
| cell-cell junction disassembly | 1 | 1296.3× | 0.007 | ASB17 |
| positive regulation of cardiac ventricle development | 1 | 1296.3× | 0.007 | BMPR1A |
| fibrous ring of heart morphogenesis | 1 | 1296.3× | 0.007 | BMPR1A |
Therapeutics
Drug target analysis
Approved (phase 4): 2 · Phase ≥3: 2 · Phased (≥1): 2 · Undrugged: 11
Druggability breadth: 3 of 13 evidence-associated genes (23%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| BMPR1A | MOMELOTINIB |
| PRKD1 | INGENOL MEBUTATE |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| PRKD1 | 26 | 4 |
| BMPR1A | 11 | 4 |
| ASB17 | 0 | 0 |
| CITED2 | 0 | 0 |
| ANKRD11 | 0 | 0 |
| MCTP2 | 0 | 0 |
| DLC1 | 0 | 0 |
| FGF10 | 0 | 0 |
| HAND2 | 0 | 0 |
| SMAD6 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| MOMELOTINIB | 4 | BMPR1A |
| GILTERITINIB | 4 | BMPR1A |
| DASATINIB | 4 | BMPR1A |
| INGENOL MEBUTATE | 4 | PRKD1 |
| MIDOSTAURIN | 4 | PRKD1 |
| TAMOXIFEN | 4 | PRKD1 |
| NERATINIB | 4 | PRKD1 |
| BRIGATINIB | 4 | PRKD1 |
| NINTEDANIB | 4 | PRKD1 |
| SUNITINIB | 4 | PRKD1 |
| CRIZOTINIB | 4 | PRKD1 |
| GEFITINIB | 4 | PRKD1 |
| SARACATINIB | 3 | BMPR1A |
| LESTAURTINIB | 3 | BMPR1A, PRKD1 |
| SURAMIN | 3 | PRKD1 |
| FASUDIL | 3 | PRKD1 |
| ALVOCIDIB | 3 | PRKD1 |
| AT-9283 | 2 | BMPR1A, PRKD1 |
| ZILURGISERTIB | 2 | BMPR1A |
| KER-047 | 2 | BMPR1A |
| PHORBOL MYRISTATE ACETATE | 2 | PRKD1 |
| EDELFOSINE | 2 | PRKD1 |
| UPROSERTIB | 2 | PRKD1 |
| UCN-01 | 2 | PRKD1 |
| SU-014813 | 2 | PRKD1 |
| BI-2536 | 2 | PRKD1 |
| KW-2449 | 1 | BMPR1A, PRKD1 |
| XL-228 | 1 | BMPR1A |
| Y-39983 | 1 | BMPR1A |
| BMS-387032 | 1 | PRKD1 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 3.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| PRKD1 | 660 | Binding:650, Functional:10 |
| BMPR1A | 169 | Binding:166, ADMET:3 |
| CERS1 | 2 | Binding:2 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| BMPR1A | 2.7.10.2 | non-specific protein-tyrosine kinase |
| PRKD1 | 2.7.11.13 | protein kinase C |
| CERS1 | 2.3.1.299 | sphingoid base N-stearoyltransferase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| BMPR1A | 169 |
| PRKD1 | 660 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 13; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| MOMELOTINIB | 4 | BMPR1A |
| GILTERITINIB | 4 | BMPR1A |
| DASATINIB | 4 | BMPR1A |
| INGENOL MEBUTATE | 4 | PRKD1 |
| MIDOSTAURIN | 4 | PRKD1 |
| TAMOXIFEN | 4 | PRKD1 |
| NERATINIB | 4 | PRKD1 |
| BRIGATINIB | 4 | PRKD1 |
| NINTEDANIB | 4 | PRKD1 |
| SUNITINIB | 4 | PRKD1 |
| CRIZOTINIB | 4 | PRKD1 |
| GEFITINIB | 4 | PRKD1 |
| SARACATINIB | 3 | BMPR1A |
| LESTAURTINIB | 3 | BMPR1A, PRKD1 |
| SURAMIN | 3 | PRKD1 |
| FASUDIL | 3 | PRKD1 |
| ALVOCIDIB | 3 | PRKD1 |
| AT-9283 | 2 | BMPR1A, PRKD1 |
| ZILURGISERTIB | 2 | BMPR1A |
| KER-047 | 2 | BMPR1A |
| PHORBOL MYRISTATE ACETATE | 2 | PRKD1 |
| EDELFOSINE | 2 | PRKD1 |
| UPROSERTIB | 2 | PRKD1 |
| UCN-01 | 2 | PRKD1 |
| SU-014813 | 2 | PRKD1 |
| BI-2536 | 2 | PRKD1 |
| KW-2449 | 1 | BMPR1A, PRKD1 |
| XL-228 | 1 | BMPR1A |
| Y-39983 | 1 | BMPR1A |
| BMS-387032 | 1 | PRKD1 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 2 | BMPR1A, PRKD1 |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 1 | CERS1 |
| E | Difficult family or no structure, no drug | 10 | ASB17, CITED2, ANKRD11, MCTP2, DLC1, FGF10, HAND2, SMAD6, RBFOX2, GATA5 |
Undrugged target profiles
11 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| ASB17 | 0 | — |
| CITED2 | 0 | — |
| ANKRD11 | 0 | — |
| MCTP2 | 0 | — |
| DLC1 | 0 | — |
| FGF10 | 0 | — |
| HAND2 | 0 | — |
| SMAD6 | 0 | — |
| RBFOX2 | 0 | — |
| CERS1 | 2 | — |
| GATA5 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.