Congenital myasthenic syndrome

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Also known as CMScongenital MGcongenital myastheniaCongenital Myasthenic Syndromeserb-Goldflam syndromemyasthenia gravis congenitalmyasthenia gravis pseudoparalyticamyasthenic syndrome, congenital

Summary

Congenital myasthenic syndrome (MONDO:0018940) is a disease (an umbrella term covering 8 Mondo subtypes) caused by variants in CHRNE, GMPPB, and PLEC, with 23 cohort genes and 12 clinical trials. The dominant Reactome pathway is Presynaptic nicotinic acetylcholine receptors (4 cohort genes). Top therapeutic interventions include albuterol, amifampridine phosphate, and argx-119.

At a glance

  • Prevalence: 1-9 / 1 000 000 (Europe) [Orphanet-validated]
  • Causal genes: CHRNE (GenCC Definitive), GMPPB (GenCC Strong), PLEC (GenCC Strong)
  • Umbrella term: 8 Mondo subtypes
  • Cohort genes: 23
  • ClinVar variants: 704
  • Phenotypes (HPO): 68
  • Clinical trials: 12

Clinical features

Epidemiology

Prevalence records

2 prevalence record(s), Orphanet:

TypeClassValueGeographyValidation
Point prevalence1-9 / 1 000 0000.3EuropeValidated
Point prevalence1-9 / 1 000 0000.92United KingdomValidated

Signs & symptoms

Clinical features (HPO)

68 HPO clinical features (Orphanet curated; top 50 by frequency):

HPO IDTermFrequency
HP:0000467Neck muscle weaknessVery frequent (80-99%)
HP:0000508PtosisVery frequent (80-99%)
HP:0002015DysphagiaVery frequent (80-99%)
HP:0002033Poor suckVery frequent (80-99%)
HP:0002882Sudden episodic apneaVery frequent (80-99%)
HP:0003473Fatigable weaknessVery frequent (80-99%)
HP:0003701Proximal muscle weaknessVery frequent (80-99%)
HP:0004661Frontalis muscle weaknessVery frequent (80-99%)
HP:0004889Intermittent episodes of respiratory insufficiency due to muscle weaknessVery frequent (80-99%)
HP:0011968Feeding difficultiesVery frequent (80-99%)
HP:0001611Hypernasal speechFrequent (30-79%)
HP:0002205Recurrent respiratory infectionsFrequent (30-79%)
HP:0002804Arthrogryposis multiplex congenitaFrequent (30-79%)
HP:0000602OphthalmoplegiaFrequent (30-79%)
HP:0000961CyanosisFrequent (30-79%)
HP:0001249Intellectual disabilityFrequent (30-79%)
HP:0001251AtaxiaFrequent (30-79%)
HP:0001283Bulbar palsyFrequent (30-79%)
HP:0001558Decreased fetal movementFrequent (30-79%)
HP:0002872Apneic episodes precipitated by illness, fatigue, stressFrequent (30-79%)
HP:0003324Generalized muscle weaknessFrequent (30-79%)
HP:0003388Easy fatigabilityFrequent (30-79%)
HP:0004885Episodic respiratory distressFrequent (30-79%)
HP:0008443Spinal deformitiesFrequent (30-79%)
HP:0010536Central sleep apneaFrequent (30-79%)
HP:0011469Nasal regurgitationFrequent (30-79%)
HP:0030842Choking episodesFrequent (30-79%)
HP:0100285EMG: impaired neuromuscular transmissionFrequent (30-79%)
HP:0100295Muscle fiber atrophyFrequent (30-79%)
HP:0001288Gait disturbanceFrequent (30-79%)
HP:0000218High palateOccasional (5-29%)
HP:0000276Long faceOccasional (5-29%)
HP:0001250SeizureOccasional (5-29%)
HP:0001252HypotoniaOccasional (5-29%)
HP:0001270Motor delayOccasional (5-29%)
HP:0001284AreflexiaOccasional (5-29%)
HP:0001612Weak cryOccasional (5-29%)
HP:0001618DysphoniaOccasional (5-29%)
HP:0001761Pes cavusOccasional (5-29%)
HP:0002421Poor head controlOccasional (5-29%)
HP:0002515Waddling gaitOccasional (5-29%)
HP:0002751KyphoscoliosisOccasional (5-29%)
HP:0003306Spinal rigidityOccasional (5-29%)
HP:0003325Limb-girdle muscle weaknessOccasional (5-29%)
HP:0003458EMG: myopathic abnormalitiesOccasional (5-29%)
HP:0003693Distal amyotrophyOccasional (5-29%)
HP:0009053Distal lower limb muscle weaknessOccasional (5-29%)
HP:0010307StridorOccasional (5-29%)
HP:0012801Narrow jawOccasional (5-29%)
HP:0030051Tip-toe gaitOccasional (5-29%)

Identifiers

Disease identifiers

FieldValue
Canonical namecongenital myasthenic syndrome
Mondo IDMONDO:0018940
MeSHD020294
OMIM601462
Orphanet590
DOIDDOID:3635
ICD-111515367530
NCITC84647
SNOMED CT230672006
UMLSC0751882
MedGen155650
GARD0011902
NORD1893
Is cancer (heuristic)no

Also known as: CMS · congenital MG · congenital myasthenia · Congenital Myasthenic Syndromes · erb-Goldflam syndrome · myasthenia gravis congenital · myasthenia gravis pseudoparalytica · myasthenic syndrome, congenital

Data availability: 704 ClinVar variants · 7 GenCC gene-disease records · 11 cell lines.

Disease family

An umbrella term covering 8 Mondo subtypes.

Classification path: disease › human disease › disease by body system or component › syndromic diseasecongenital myasthenic syndrome

Related subtypes (1183): Neu-Laxova syndrome, inclusion body myopathy with Paget disease of bone and frontotemporal dementia, syndromic intellectual disability, abdominal obesity-metabolic syndrome, fibrogenesis imperfecta ossium, Fanconi renotubular syndrome, palindromic rheumatism, hepatorenal syndrome, Potter sequence, vertebral artery insufficiency, sick sinus syndrome, Tietze syndrome, toxic shock syndrome, capillary leak syndrome, dumping syndrome, FG syndrome, basilar artery insufficiency, long QT syndrome, Treacher-Collins syndrome, superior mesenteric artery syndrome, disappearing bone disease, Brown-Sequard syndrome, Froelich syndrome, diffuse infiltrative lymphocytosis syndrome, Capgras syndrome, compartment syndrome, central sleep apnea syndrome, irritable bowel syndrome, nephrotic syndrome, myalgic encephalomeyelitis/chronic fatigue syndrome, acute coronary syndrome, fibromyalgia, substance withdrawal syndrome, acute chest syndrome, Barre-Lieou syndrome, cauda equina syndrome, Kluver-Bucy syndrome, Miller Fisher syndrome, persian gulf syndrome, Reye syndrome, thoracic outlet syndrome, Waterhouse-Friderichsen syndrome, Wissler syndrome, acute respiratory distress syndrome, Achenbach syndrome, miliaria, anterior spinal artery syndrome, burning mouth syndrome, dry eye syndrome, empty sella syndrome, euthyroid sick syndrome, lateral medullary syndrome, subclavian steal syndrome, tarsal tunnel syndrome, tethered spinal cord syndrome, branchio-oto-renal syndrome, prune belly syndrome, Achard syndrome, alopecia-epilepsy-pyorrhea-intellectual disability syndrome, Finnish type amyloidosis, Angelman syndrome, aniridia-absent patella syndrome, ankyloblepharon filiforme adnatum-cleft palate syndrome, Townes-Brocks syndrome, obstructive sleep apnea syndrome, Lown-Ganong-Levine syndrome, Behcet disease, brachydactyly-arterial hypertension syndrome, brachydactyly type A2, fibular aplasia-ectrodactyly syndrome, brachydactyly-nystagmus-cerebellar ataxia syndrome, Sillence syndrome, Brachymorphism-onychodysplasia-dysphalangism syndrome, brachytelephalangy-dysmorphism-Kallmann syndrome, dilated cardiomyopathy 1A, cat-eye syndrome, cerebrocostomandibular syndrome, Alagille syndrome, autosomal dominant chondrodysplasia punctata, cleidocranial dysplasia 1, cleidorhizomelic syndrome, cochleosaccular degeneration-cataract syndrome, renal coloboma syndrome, Cri-du-chat syndrome, autosomal dominant deafness - onychodystrophy syndrome, cerebral arteriopathy with subcortical infarcts and leukoencephalopathy, Duane retraction syndrome, 3-M syndrome, dyschondrosteosis-nephritis syndrome, hereditary benign intraepithelial dyskeratosis, encephalopathy, recurrent, of childhood, Camurati-Engelmann disease, Felty syndrome, chromosome 16p12.1 deletion syndrome, 520kb, Frasier syndrome, Gamstorp-Wohlfart syndrome, Tourette syndrome, glaucoma-sleep apnea syndrome, renal cysts and diabetes syndrome, hypotrichosis-lymphedema-telangiectasia syndrome (grouping), GMS syndrome, gray platelet syndrome, hand-foot-genital syndrome, facial hemiatrophy, Bencze syndrome, alpha thalassemia-intellectual disability syndrome type 1, Gilbert syndrome, mullerian duct anomalies-limb anomalies syndrome, hypoparathyroidism-deafness-renal disease syndrome, chromosome 18p deletion syndrome, Pallister-Hall syndrome, ichthyosis-cheek-eyebrow syndrome, Jacobsen syndrome, palmoplantar keratoderma-hereditary motor and sensory neuropathy syndrome, palmoplantar keratoderma-esophageal carcinoma syndrome, Kleine-Levin syndrome, angioosteohypertrophic syndrome, congenital laryngeal web, Lenz-Majewski hyperostotic dwarfism, Noonan syndrome with multiple lentigines, lymphedema-cerebral arteriovenous anomaly syndrome, microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability, yellow nail syndrome, lymphedema-distichiasis syndrome, Nager acrofacial dysostosis, jaw-winking syndrome, Marfan syndrome, Melkersson-Rosenthal syndrome, metaphyseal chondrodysplasia, Jansen type, Schmid metaphyseal chondrodysplasia, metaphyseal dysplasia-maxillary hypoplasia-brachydacty syndrome, microgastria-limb reduction defect syndrome, Mobius syndrome, muscular atrophy-ataxia-retinitis pigmentosa-diabetes mellitus syndrome, nail-patella syndrome, Schilbach-Rott syndrome, syndromic orbital border hypoplasia, Buschke-Ollendorff syndrome, nasopalpebral lipoma-coloboma syndrome, Perry syndrome, Poland syndrome, polydactyly-myopia syndrome, Greig cephalopolysyndactyly syndrome, Prader-Willi syndrome, Guttmacher syndrome, Currarino triad, Hutchinson-Gilford progeria syndrome, progeria-short stature-pigmented nevi syndrome, Liddle syndrome, exfoliation syndrome, ptosis-strabismus-ectopic pupils syndrome, radial hypoplasia-triphalangeal thumbs-hypospadias-maxillary diastema syndrome, radial ray hypoplasia-choanal atresia syndrome, Roussy-Levy syndrome, Silver-Russell syndrome, Ruvalcaba syndrome, oculodental syndrome, Rutherfurd type, aplasia of lacrimal and salivary glands, scalp defects-postaxial polydactyly syndrome, ulnar-mammary syndrome, septooptic dysplasia, Czeizel-Losonci syndrome, polycystic ovary syndrome, stiff-person syndrome, syndactyly-polydactyly-ear lobe syndrome, HELLP syndrome, double uterus-hemivagina-renal agenesis syndrome, VACTERL/vater association, posterior fusion of lumbosacral vertebrae-blepharoptosis syndrome, ptosis-vocal cord paralysis syndrome, Freeman-Sheldon syndrome, Williams syndrome, Denys-Drash syndrome, Wolf-Hirschhorn syndrome, ablepharon macrostomia syndrome, acrocallosal syndrome, PAGOD syndrome, alopecia - intellectual disability syndrome, mitochondrial DNA depletion syndrome 4a, Alstrom syndrome, aniridia-cerebellar ataxia-intellectual disability syndrome, aniridia-renal agenesis-psychomotor retardation syndrome, aplasia cutis congenita-intestinal lymphangiectasia syndrome, fetal akinesia deformation sequence, blepharophimosis-ptosis-esotropia-syndactyly-short stature syndrome, Bloom syndrome, Elsahy-Waters syndrome, campomelia, Cumming type, camptomelic syndrome, long-limb type, congenital cataract-ichthyosis syndrome, colobomatous optic disc-macular atrophy-chorioretinopathy syndrome, hepatic fibrosis-renal cysts-intellectual disability syndrome, Charcot-Marie-Tooth disease-hearing loss-intellectual disability syndrome, CHARGE syndrome, Aagenaes syndrome, infantile choroidocerebral calcification syndrome, Yunis-Varon syndrome, corneal dystrophy-perceptive deafness syndrome, cortical blindness-intellectual disability-polydactyly syndrome, Crigler-Najjar syndrome, cataract-nephropathy-encephalopathy syndrome, Fraser syndrome, cystic fibrosis-gastritis-megaloblastic anemia syndrome, cystinuria, DOORS syndrome, high myopia-sensorineural deafness syndrome, dermochondrocorneal dystrophy, nephrogenic diabetes insipidus-intracranial calcification syndrome, diverticulosis of bowel, hernia, and retinal detachment, Dyggve-Melchior-Clausen disease, cerebellar ataxia, intellectual disability, and dysequilibrium, ectrodactyly-polydactyly syndrome, Bonnemann-Meinecke-Reich syndrome, epidermolysis bullosa simplex 5B, with muscular dystrophy, Wolcott-Rallison syndrome, ermine phenotype, eyebrow duplication-syndactyly syndrome, Fanconi-like syndrome, gingival fibromatosis-facial dysmorphism syndrome, frontofacionasal dysplasia, Fryns syndrome, German syndrome, Bernard-Soulier syndrome, triple-A syndrome, Grubben-de Cock-Borghgraef syndrome, mullerian derivatives-lymphangiectasia-polydactyly syndrome, Hirschsprung disease-hearing loss-polydactyly syndrome, Hirschsprung disease-nail hypoplasia-dysmorphism syndrome, Holzgreve-Wagner-Rehder syndrome, multinucleated neurons-anhydramnios-renal dysplasia-cerebellar hypoplasia-hydranencephaly syndrome, growth delay-hydrocephaly-lung hypoplasia syndrome, Dubin-Johnson syndrome, ornithine translocase deficiency, acrofrontofacionasal dysostosis 2, hypertrichotic osteochondrodysplasia Cantu type, hypergonadotropic hypogonadism-cataract syndrome, primary hypergonadotropic hypogonadism-partial alopecia syndrome, hypoparathyroidism-retardation-dysmorphism syndrome, hypospadias-intellectual disability, Goldblatt type syndrome, Bamforth-Lazarus syndrome, ichthyosis-hepatosplenomegaly-cerebellar degeneration syndrome, ichthyosis-intellectual disability-dwarfism-renal impairment syndrome, Vici syndrome, channelopathy-associated congenital insensitivity to pain, autosomal recessive, Joubert syndrome with oculorenal defect, oculocerebrofacial syndrome, Kaufman type, Landau-Kleffner syndrome, laryngo-onycho-cutaneous syndrome, Laurence-Moon syndrome, Donohue syndrome, Miller-Dieker lissencephaly syndrome, Marinesco-Sjogren syndrome, Frank-Ter Haar syndrome, Mietens syndrome, mesomelic dwarfism-cleft palate-camptodactyly syndrome, metaphyseal chondrodysplasia-retinitis pigmentosa syndrome, metaphyseal dysostosis-intellectual disability-conductive deafness syndrome, microcephalic primordial dwarfism, Toriello type, Say-Barber-Miller syndrome, microcephaly and chorioretinopathy 1, Galloway-Mowat syndrome, microtia with meatal atresia and conductive deafness, mucopolysaccharidosis type 6, mulibrey nanism, lethal multiple pterygium syndrome, lethal congenital contracture syndrome 1, Schwartz-Jampel syndrome, Nathalie syndrome, nephronophthisis 1, nephropathy - deafness - hyperparathyroidism syndrome, nephrosis-deafness-urinary tract-digital malformations syndrome, Netherton syndrome, Norman-Roberts syndrome, cloacal exstrophy, ichthyosis-oral and digital anomalies syndrome, Primrose syndrome, familial osteodysplasia, Anderson type, multicentric osteolysis, nodulosis, and arthropathy, osteopenia-intellectual disability-sparse hair syndrome, osteoporosis-pseudoglioma syndrome, Shwachman-Diamond syndrome, Parana hard-skin syndrome, PEHO syndrome, Imerslund-Grasbeck syndrome, Peters plus syndrome, pili torti-developmental delay-neurological abnormalities syndrome, Rabson-Mendenhall syndrome, postaxial acrofacial dysostosis, Gitelman syndrome, Wiedemann-Rautenstrauch syndrome, Acrootoocular syndrome, holoprosencephaly-postaxial polydactyly syndrome, autosomal recessive multiple pterygium syndrome, Perlman syndrome, retinitis pigmentosa-intellectual disability-deafness-hypogenitalism syndrome, EEC syndrome, SHORT syndrome, Sjogren syndrome, spastic tetraplegia-retinitis pigmentosa-intellectual disability syndrome, corneal-cerebellar syndrome, spastic ataxia-corneal dystrophy syndrome, spondylocostal dysostosis-anal and genitourinary malformations syndrome, familial infantile bilateral striatal necrosis, subaortic stenosis-short stature syndrome, thrombocytopenia-absent radius syndrome, thyrocerebrorenal syndrome, Pendred syndrome, VACTERL with hydrocephalus, Weaver syndrome, Werner syndrome, Wernicke-Korsakoff syndrome, wooly hair-hypotrichosis-everted lower lip-outstanding ears syndrome, de Sanctis-Cacchione syndrome, corpus callosum agenesis-abnormal genitalia syndrome, Alport syndrome-intellectual disability-midface hypoplasia-elliptocytosis syndrome, X-linked lissencephaly with abnormal genitalia, X-linked myotubular myopathy-abnormal genitalia syndrome, Christianson syndrome, Armfield syndrome, Lesch-Nyhan syndrome, Atkin-Flaitz syndrome, alpha-thalassemia-myelodysplastic syndrome, deafness-intellectual disability, Martin-Probst type syndrome, fragile X-associated tremor/ataxia syndrome, fragile X syndrome, syndactyly-telecanthus-anogenital and renal malformations syndrome, X-linked dominant chondrodysplasia, Chassaing-Lacombe type, X-linked central congenital hypothyroidism with late-onset testicular enlargement, Meester-Loeys syndrome, Arts syndrome, X-linked mandibulofacial dysostosis, Abruzzo-Erickson syndrome, Aicardi syndrome, craniofrontonasal syndrome, deafness-hypogonadism syndrome, X-linked corneal dermoid, immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome, hydrocephaly-cerebellar agenesis syndrome, keratosis follicularis-dwarfism-cerebral atrophy syndrome, laryngeal abductor paralysis-intellectual disability syndrome, oculocerebrorenal syndrome, Menkes disease, paraplegia-intellectual disability-hyperkeratosis syndrome, mucopolysaccharidosis type 2, orofaciodigital syndrome I, otopalatodigital syndrome type 1, Pallister-W syndrome, Rett syndrome, SCARF syndrome, Simpson-Golabi-Behmel syndrome, torticollis-keloids-cryptorchidism-renal dysplasia syndrome, trigonocephaly-short stature-developmental delay syndrome, ulnar hypoplasia-split foot syndrome, van den Bosch syndrome, Wildervanck syndrome, Kearns-Sayre syndrome, MELAS syndrome, MERRF syndrome, Pearson syndrome, proximal tubulopathy-diabetes mellitus-cerebellar ataxia syndrome, pancreatic hypoplasia-diabetes-congenital heart disease syndrome, chondrodysplasia-pseudohermaphroditism syndrome, Qazi Markouizos syndrome, familial developmental dysphasia, atrioventricular defect-blepharophimosis-radial and anal defect syndrome, CODAS syndrome, lethal hemolytic anemia-genital anomalies syndrome, HEC syndrome, anophthalmia plus syndrome, infundibulopelvic stenosis-multicystic kidney syndrome, Ayme-Gripp syndrome, dilated cardiomyopathy 1E, diaphragmatic defect-limb deficiency-skull defect syndrome, skeletal dysplasia-epilepsy-short stature syndrome, Potocki-Shaffer syndrome, amelia cleft lip palate hydrocephalus iris coloboma, human HOXA1 syndromes, dyssegmental dysplasia-glaucoma syndrome, lung agenesis-heart defect-thumb anomalies syndrome, tetrasomy 12p, chromosome 18q deletion syndrome, lymphedema-atrial septal defects-facial changes syndrome, infantile convulsions and choreoathetosis, RHYNS syndrome, Pierre Robin sequence with pectus excavatum and rib and scapular anomalies, colobomatous macrophthalmia-microcornea syndrome, Marshall-Smith syndrome, distal monosomy 13q, MPI-congenital disorder of glycosylation, camptodactyly, myopia, and fibrosis of the medial rectus muscle of eye, radioulnar synostosis-microcephaly-scoliosis syndrome, blepharophimosis - intellectual disability syndrome, SBBYS type, complex regional pain syndrome type 1, temtamy preaxial brachydactyly syndrome, Diamond-Blackfan anemia 2, genitopatellar syndrome, Phelan-McDermid syndrome, hypotonia-cystinuria syndrome, DNA ligase IV deficiency, Hurler syndrome, Hurler-Scheie syndrome, Scheie syndrome, Duane-radial ray syndrome, psoriatic arthritis, neonatal ichthyosis-sclerosing cholangitis syndrome, skin fragility-woolly hair-palmoplantar keratoderma syndrome, tubulointerstitial nephritis and uveitis syndrome, caudal duplication, sweet syndrome, ichthyosis prematurity syndrome, Meacham syndrome, BNAR syndrome, PCWH syndrome, foveal hypoplasia - optic nerve decussation defect - anterior segment dysgenesis syndrome, B-cell immunodeficiency, distal limb anomalies, and urogenital malformations, MEDNIK syndrome, Cerebrorenodigital syndrome, fetal valproate syndrome, Goldberg-Shprintzen syndrome, Al-Gazali syndrome, CEDNIK syndrome, osteosclerosis-ichthyosis-premature ovarian failure syndrome, cortical dysplasia-focal epilepsy syndrome, DK1-congenital disorder of glycosylation, Potocki-Lupski syndrome, Pitt-Hopkins syndrome, XFE progeroid syndrome, deafness-infertility syndrome, COG1-congenital disorder of glycosylation, autosomal dominant familial hematuria-retinal arteriolar tortuosity-contractures syndrome, microtia-eye coloboma-imperforation of the nasolacrimal duct syndrome, mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria, ANE syndrome, CLOVES syndrome, Hirschsprung disease-ganglioneuroblastoma syndrome, parkinsonism-dystonia, infantile, alpha 1-antitrypsin deficiency, COG5-congenital disorder of glycosylation, chromosome 13q14 deletion syndrome, deafness-lymphedema-leukemia syndrome, microcephaly-capillary malformation syndrome, EDICT syndrome, peripheral neuropathy-myopathy-hoarseness-hearing loss syndrome, hypomyelinating leukodystrophy 8 with or without oligodontia and-or hypogonadotropic hypogonadism, IMAGe syndrome, short stature-onychodysplasia-facial dysmorphism-hypotrichosis syndrome, microcephalic primordial dwarfism, Alazami type, intellectual disability-strabismus syndrome, estrogen resistance syndrome, Hartsfield-Bixler-Demyer syndrome, severe dermatitis-multiple allergies-metabolic wasting syndrome, alacrima, achalasia, and intellectual disability syndrome, familial episodic pain syndrome with predominantly lower limb involvement, congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome, diffuse cerebral and cerebellar atrophy - intractable seizures - progressive microcephaly syndrome, postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome, tall stature-scoliosis-macrodactyly of the great toes syndrome, intellectual disability, autosomal dominant 29, intellectual disability, autosomal dominant 30, congenital sideroblastic anemia-B-cell immunodeficiency-periodic fever-developmental delay syndrome, retinitis pigmentosa-juvenile cataract-short stature-intellectual disability syndrome, polyendocrine-polyneuropathy syndrome, chronic atrial and intestinal dysrhythmia, motor developmental delay due to 14q32.2 paternally expressed gene defect, peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndrome, mandibulofacial dysostosis with alopecia, epilepsy with myoclonic atonic seizures, short stature, microcephaly, and endocrine dysfunction, progressive microcephaly-seizures-cortical blindness-developmental delay syndrome, PMP22-RAI1 contiguous gene duplication syndrome, acute infantile liver failure-cerebellar ataxia-peripheral sensory motor neuropathy syndrome, familial progressive retinal dystrophy-iris coloboma-congenital cataract syndrome, macrothrombocytopenia-lymphedema-developmental delay-facial dysmorphism-camptodactyly syndrome, Luscan-Lumish syndrome, even-plus syndrome, MIRAGE syndrome, growth retardation, intellectual developmental disorder, hypotonia, and hepatopathy, intellectual disability-epilepsy-extrapyramidal syndrome, 48,XXYY syndrome, FRAXF syndrome, complex hereditary spastic paraplegia, aniridia-ptosis-intellectual disability-familial obesity syndrome, aniridia - intellectual disability syndrome, ankyloblepharon filiforme-imperforate anus syndrome, pentasomy X, Bardet-Biedl syndrome, anophthalmia-megalocornea-cardiopathy-skeletal anomalies syndrome, Bartter syndrome, arachnodactyly-intellectual disability-dysmorphism syndrome, ataxia-photosensitivity-short stature syndrome, Brugada syndrome, Feingold syndrome, cardiomyopathy-cataract-hip spine disease syndrome, cataract - microcornea syndrome, autism-facial port-wine stain syndrome, cataract-intellectual disability-anal atresia-urinary defects syndrome, cataract-deafness-hypogonadism syndrome, syndromic craniosynostosis, drug rash with eosinophilia and systemic symptoms, multicentric reticulohistiocytosis, hereditary sensory and autonomic neuropathy with deafness and global delay, craniofacial microsomia, ring chromosome 10, Coffin-Siris syndrome, corpus callosum agenesis-double urinary collecting system syndrome, short rib-polydactyly syndrome, oromandibular-limb anomalies syndrome, hemophagocytic syndrome, cataract-glaucoma syndrome, diencephalic syndrome, hypereosinophilic syndrome, distal trisomy 14q, intellectual disability-cataracts-kyphosis syndrome, progressive familial intrahepatic cholestasis, thoraco-abdominal enteric duplication, oculomaxillofacial dysostosis, growth hormone insensitivity syndrome, syndromic dyslipidemia, macrothrombocytopenia and granulocyte inclusions with or without nephritis or sensorineural hearing loss, epiphyseal dysplasia-hearing loss-dysmorphism syndrome, eosinophilic granulomatosis with polyangiitis, axial mesodermal dysplasia spectrum, fetal hydantoin syndrome, vitamin K-antagonist embryofetopathy, fetal alcohol syndrome, methimazole embryofetopathy, Evans syndrome, Cornelia de Lange syndrome, cleft lip-retinopathy syndrome, cleft lip/palate-deafness-sacral lipoma syndrome, Crandall syndrome, syndromic microphthalmia, Cole-Carpenter syndrome, myotonic syndrome, Guillain-Barre syndrome, atypical hemolytic-uremic syndrome, Hennekam syndrome, Hernández-Aguirre Negrete syndrome, nodular neuronal heterotopia, Hirschsprung disease-type D brachydactyly syndrome, holoprosencephaly, hydrocephalus-obesity-hypogonadism syndrome, hydrocephalus-blue sclerae-nephropathy syndrome, xeroderma pigmentosum-Cockayne syndrome complex, Joubert syndrome with ocular defect, hypogonadism-mitral valve prolapse-intellectual disability syndrome, hypogonadotropic hypogonadism-retinitis pigmentosa syndrome, hypotrichosis-intellectual disability, Lopes type, congenital ichthyosis-microcephalus-tetraplegia syndrome, Hughes-Stovin syndrome, heart-hand syndrome, ptosis-upper ocular movement limitation-absence of lacrimal punctum syndrome, syndromic agammaglobulinemia, isotretinoin syndrome, microcornea-posterior megalolenticonus-persistent fetal vasculature-coloboma syndrome, Kabuki syndrome, Kenny-Caffey syndrome, muscular pseudohypertrophy-hypothyroidism syndrome, Kousseff syndrome, limb body wall complex, Lennox-Gastaut syndrome, Lowe-Kohn-Cohen syndrome, macrocephaly-short stature-paraplegia syndrome, primary ciliary dyskinesia, familial intestinal malrotation-facial anomalies syndrome, primary hypertrophic osteoarthropathy, Melhem-Fahl syndrome, lower limb deficiency-hypospadias syndrome, 8p23.1 microdeletion syndrome, sickle cell-beta-thalassemia disease syndrome, sickle cell-hemoglobin c disease syndrome, sickle cell-hemoglobin d disease syndrome, sickle cell-hemoglobin E disease syndrome, hereditary persistence of fetal hemoglobin-sickle cell disease syndrome, microcephaly-brain defect-spasticity-hypernatremia syndrome, microcephaly-microcornea syndrome, Seemanova type, Meier-Gorlin syndrome, Mikati-Najjar-Sahli syndrome, shoulder and girdle defects-familial intellectual disability syndrome, myopathy-growth delay-intellectual disability-hypospadias syndrome, Fuchs heterochromic iridocyclitis, microcephalic osteodysplastic primordial dwarfism types I and III, osteochondrodysplatic nanism-deafness-retinitis pigmentosa syndrome, arthrogryposis-renal dysfunction-cholestasis syndrome, oculo-skeletal-renal syndrome, olivopontocerebellar atrophy-deafness syndrome, Opitz G/BBB syndrome, imperforate oropharynx-costo vetebral anomalies syndrome, Bruck syndrome, osteoporosis-macrocephaly-blindness-joint hyperlaxity syndrome, calciphylaxis, recessive intellectual disability-motor dysfunction-multiple joint contractures syndrome, X-linked ichthyosis syndrome, autoimmune polyendocrinopathy, renal caliceal diverticuli-deafness syndrome, tempi syndrome, syndromic oculocutaneous albinism, short stature-deafness-neutrophil dysfunction-dysmorphism syndrome, congenital varicella syndrome, polyneuropathy-intellectual disability-acromicria-premature menopause syndrome, celiac trunk compression syndrome, hypoplastic pancreas-intestinal atresia-hypoplastic gallbalder syndrome, fetal cytomegalovirus syndrome, Reunion island Larsen syndrome, 46,XX disorder of sex development-anorectal anomalies syndrome, mitochondrial neurogastrointestinal encephalomyopathy, Baraitser-Winter cerebrofrontofacial syndrome, mirror polydactyly-vertebral segmentation-limbs defects syndrome, intellectual disability-hypotonia-skin hyperpigmentation syndrome, congenital hereditary facial paralysis-variable hearing loss syndrome, intellectual disability-microcephaly-phalangeal-facial abnormalities syndrome, Mayer-Rokitansky-Kuster-Hauser syndrome, developmental and speech delay due to SOX5 deficiency, Spigelian hernia-cryptorchidism syndrome, autosomal recessive leukoencephalopathy-ischemic stroke-retinitis pigmentosa syndrome, severe neonatal hypotonia-seizures-encephalopathy syndrome due to 5q31.3 microdeletion, multiple sclerosis-ichthyosis-factor VIII deficiency syndrome, X-linked spasticity-intellectual disability-epilepsy syndrome, spina bifida-hypospadias syndrome, hantavirus pulmonary syndrome, white matter hypoplasia-corpus callosum agenesis-intellectual disability syndrome, deafness-genital anomalies-metacarpal and metatarsal synostosis syndrome, hearing loss-familial salivary gland insensitivity to aldosterone syndrome, multiple synostoses syndrome, central nervous system calcification-deafness-tubular acidosis-anemia syndrome, multiple paragangliomas associated with polycythemia, syngnathia multiple anomalies, Takayasu arteritis, severe early-onset obesity-insulin resistance syndrome due to SH2B1 deficiency, spondylocostal dysostosis-hypospadias-intellectual disability syndrome, hypotrichosis-deafness syndrome, thalidomide embryopathy, trisomy X, trisomy 13, trisomy 18, umbilical cord ulceration-intestinal atresia syndrome, microcephaly-brachydactyly-kyphoscoliosis syndrome, Waardenburg syndrome, Weill-Marchesani syndrome, infantile spasms, Wolfram syndrome, epidermal nevus syndrome, digital anomalies-intellectual disability-short stature syndrome, intellectual disability-obesity-brain malformations-facial dysmorphism syndrome, Erdheim-Chester disease, Stevens-Johnson syndrome, CADDS, finger hyperphalangy - toe anomalies - severe pectus excavatum syndrome, ataxia - telangiectasia variant, growth retardation-mild developmental delay-chronic hepatitis syndrome, primary microcephaly-mild intellectual disability-young-onset diabetes syndrome, ferro-cerebro-cutaneous syndrome, dystonia-aphonia syndrome, microcephaly-complex motor and sensory axonal neuropathy syndrome, X-linked microcephaly-growth retardation-prognathism-cryptorchidism syndrome, severe intellectual disability-hypotonia-strabismus-coarse face-planovalgus syndrome, intrauterine growth restriction-short stature-early adult-onset diabetes syndrome, pseudoxanthoma elasticum-like skin manifestations with retinitis pigmentosa, familial chylomicronemia syndrome, caudal regression-sirenomelia spectrum, visceral heterotaxy, Holmes-Adie syndrome, microcephalic primordial dwarfism due to RTTN deficiency, Joubert syndrome, congenital generalized hypercontractile muscle stiffness syndrome, Kallmann syndrome, Caroli syndrome, X-linked female restricted facial dysmorphism-short stature-choanal atresia-intellectual disability, microlissencephaly-micromelia syndrome, branchiootic syndrome, Plummer-Vinson syndrome, Cushing syndrome, McCune-Albright syndrome, Meckel syndrome, SUNCT syndrome, mucopolysaccharidosis type 3, mucopolysaccharidosis type 4, Loeys-Dietz syndrome, Alport syndrome, schisis association, Tolosa-Hunt syndrome, iridocorneal endothelial syndrome, Noonan syndrome, short fifth metacarpals-insulin resistance syndrome, progressive supranuclear palsy, benign exophthalmos syndrome, Sandifer syndrome, global developmental delay-osteopenia-ectodermal defect syndrome, tubular renal disease-cardiomyopathy syndrome, angioosteohypotrophic syndrome, 6q terminal deletion syndrome, Axenfeld-Rieger syndrome, peroxisome biogenesis disorder, ectodermal dysplasia syndrome, Seckel syndrome, Sotos syndrome, Stickler syndrome, pelvis syndrome, Susac syndrome, ischio-vertebral syndrome, BRESEK syndrome, Turner syndrome, Usher syndrome, obesity-colitis-hypothyroidism-cardiac hypertrophy-developmental delay syndrome, CREST syndrome, Sheehan syndrome, polymyalgia rheumatica, autoinflammatory syndrome, neuroleptic malignant syndrome, pituitary stalk interruption syndrome, monosomy 13q34, ring chromosome 13, 48,XXXY syndrome, 49,XXXXY syndrome, hereditary continuous muscle fiber activity, Eisenmenger syndrome, Robinow syndrome, Ehlers-Danlos syndrome, hypoplastic right heart syndrome, shone complex, 48,XYYY syndrome, subcortical band heterotopia, complex regional pain syndrome type 2, faciodigitogenital syndrome, neoplastic syndrome, paraneoplastic syndrome, post-infectious syndrome, Achard-Thiers syndrome, acral dysostosis dyserythropoiesis syndrome, agnathia-microstomia-synotia, Aksu von Stockhausen syndrome, Aloi Tomasini Isaia syndrome, temporomandibular joint dysfunction syndrome, Apert-like polydactyly syndrome, arakawa syndrome 2, arena syndrome, Arnold stickler bourne syndrome, baetz-greenwalt syndrome, bagatelle Cassidy syndrome, baker Vinters syndrome, bobble-head doll syndrome, Boerhaave syndrome, Cantu Sanchez-Corona Fragoso syndrome, Cantu Sanchez-Corona Hernandez syndrome, carbon baby syndrome, Carnevale hernandez castillo syndrome, Cartwright Nelson Fryns syndrome, Charles bonnet syndrome, Parinaud syndrome, corticobasal degeneration disorder, hair defect with photosensitivity and intellectual disability syndrome, AIDS dysmorphic syndrome, congenital acardia, acute lymphoblastic leukemia congenital sporadic aniridia, aglossia and situs inversus, agyria pachygyria polymicrogyria, agyria-pachygyria type 1, Ahumada Del Castillo syndrome, alopecia congenita keratosis palmoplantaris, alpha-mannosidosis type 1, aluminosis, Mauriac syndrome, ankle defects short stature, ankyloblepharon filiforme imperforate anus, annular constricting bands, anophthalmia cleft palate micrognathia, anophthalmia esophageal atresia cryptorchidism, anotia facial palsy cardiac defect, aortic dissection lentiginosis, childhood aortic valve stenosis, arthrogryposis IUGR thoracic dystrophy, arthrogryposis multiplex congenita CNS calcification, arthrogryposis spinal muscular atrophy, asternia, atlanto-axial fusion, atrophoderma of Pierini and Pasini, Barnicoat Baraitser syndrome, Basedow’s coma, BD syndrome, Beardwell syndrome, bhaskar jagannathan syndrome, bidirectional tachycardia, bilirubin induced brain injury in the newborn, blepharo naso facial syndrome van Maldergem type, bone dysplasia corpus callosum agenesis, brachydactyly absence of distal phalanges, brachydactyly anonychia, brachydactyly small stature face anomalies, brachydactyly tibial hypoplasia, brittle bone syndrome lethal type, bronchiectasis oligospermia, Brunsting-Perry syndrome, bruyn scheltens syndrome, burn goodship syndrome, camptodactyly joint contractures and facial skeletal dysplasia, camptodactyly vertebral fusion, Cantu Sanchez-Corona Garcia-Cruz syndrome, cardiac hydatid cysts with intracavitary expansion, cardioencephalomyopathy, cardiofacial syndrome short limbs, cardiomelic syndrome stratton Koehler type, cardiomyopathy and deafness due to tRNA lysine gene mutation, cardiomyopathy diabetes deafness, cardiomyopathy hypogonadism collagenoma syndrome, cardiomyopathy hypogonadism metabolic anomalies, cardiomyopathy spherocytosis, carpo tarsal osteolysis recessive, autosomal dominant cataract, cataract skeletal anomalies, cennamo gangemi syndrome, cerebellar agenesis, cerebello-olivary atrophy, cerebral calcification cerebellar hypoplasia, cerebral calcifications opalescent teeth phosphaturia, oculo digital syndrome, chondrodysplasia, choreoacanthocytosis amyotrophic, chorioretinopathy dominant form microcephaly, Christian Demyer Franken syndrome, Christian Johnson angenieta syndrome, chromosome 3 duplication syndrome, chronic demyelinizing neuropathy with IgM monoclonal, ciliary dyskinesia-bronchiectasis, circumscribed cutaneous aplasia of the vertex, circumscribed disseminated keratosis Jadassohn lew type, cleft lip and palate malrotation cardiopathy, cleft lip and/or palate with mucous cysts of lower, cleft lip palate dysmorphism kumar type, cleft lip palate intellectual disability corneal opacity, cleft lip palate oligodontia syndactyly pili torti, cleft lip palate pituitary deficiency, cleft lip palate-tetraphocomelia, cleft lower lip cleft lateral canthi chorioretinal, cleft palate cardiac defect ectrodactyly, cleft palate colobomata radial synostosis deafness, cleft palate heart disease polydactyly absent tibia, cleft tongue, coarse face hypotonia constipation, Cohen Lockood Wyborney syndrome, type 2 collagenopathy, Collins-Sakati syndrome, coloboma porencephaly hydronephrosis, colobomata unilobar lung heart defect, colonic malakoplakia, Colver Steer Godman syndrome, Combarros Calleja Leno syndrome, complement receptor deficiency, congenital absence of the sternocleidomastoid muscle, congenital amputation, congenital aneurysms of the great vessels, congenital articular rigidity, congenital benign spinal muscular atrophy dominant, congenital cardiovascular shunt, congenital contractures, congenital craniosynostosis maternal hyperthyroiditis, congenital cystic eye, congenital heart disease ptosis hypodontia craniostosis, congenital heart disease radio ulnar synostosis intellectual disability, congenital mumps, congenital stenosis of cervical medullary canal, Dennis-Fairhurst-Moore syndrome, congenital unilateral pulmonary hypoplasia, congenital vagal hyperreflexivity, Cormier Rustin Munnich syndrome, corneal crystals myopathy neuropathy, corneal dystrophy ichthyosis microcephaly intellectual disability, corneal dystrophy pigmentary anomaly malabsorption, corpus callosum agenesis of blepharophimosis robin type, corpus callosum dysgenesis X-linked recessive, corpus callosum dysgenesis cleft spasm, corpus callosum dysgenesis hypopituitarism, cortada Koussef Matsumoto syndrome, Cortes Lacassie syndrome, craniofacial and skeletal defects, craniofacial dysostosis arthrogryposis progeroid appearance, craniofrontonasal syndrome Teebi type, craniostenosis with congenital heart disease intellectual disability, crawfurd syndrome, cutis gyratum acanthosis nigricans craniosynostosis, cutis laxa osteoporosis, Davenport-Donlan syndrome, Davis Lafer syndrome, de Hauwere Leroy adriaenssens syndrome, deafness conductive stapedial ear malformation facial palsy, deafness goiter stippled epiphyses, deafness hypospadias metacarpal and metatarsal syndrome, deafness mesenteric diverticula of small bowel neuropathy, deafness peripheral neuropathy arterial disease, deafness progressive cataract autosomal dominant, dermatocardioskeletal syndrome boronne type, dextrocardia with situs inversus, diabetes persistent mullerian ducts, diaphragmatic agenesis radial aplasia omphalocele, diaphragmatic hernia exomphalos corpus callosum agenesis, diaphragmatic hernia upper limb defects, die Smulders droog van dijk syndrome, diomedi bernardi placidi syndrome, diphallus rachischisis imperforate anus, distichiasis heart congenital anomalies, double discordia, double uterus-hemivagina-renal agenesis, Drachtman Weinblatt Sitarz syndrome, Duker-Weiss-Siber syndrome, duodenal atresia tetralogy of fallot, duplication of leg mirror foot, duplication of the thumb unilateral biphalangeal, dupont sellier chochillon syndrome, dwarfism bluish sclerae, dwarfism deafness retinitis pigmentosa, dwarfism lethal type advanced bone age, dwarfism thin bones multiple fractures, dysmorphism cleft palate loose skin, Eagle syndrome, ectrodactyly cardiopathy dysmorphism, Elliott ludman Teebi syndrome, enamel hypoplasia cataract hydrocephaly, encephalocele anencephaly, enchondromatosis dwarfism deafness, Engelhard Yatziv syndrome, enlarged vestibular aqueduct syndrome, epidermal nevus vitamin D resistant rickets, epimetaphyseal dysplasia cataract, epiphyseal dysplasia dysmorphism camptodactyly, esophageal atresia coloboma talipes, extrasystoles short stature hyperpigmentation microcephaly, facial clefting corpus callosum agenesis, facio digito genital syndrome recessive form, facio skeletal genital syndrome rippberger type, familial capillaro-venous leptomeningeal angiomatosis, Dursun syndrome, Faye-Petersen-Ward-Carey syndrome, feigenbaum Bergeron syndrome, Feingold trainer syndrome, fetal brain disruption sequence, fetal enterovirus syndrome, fetal parainfluenza virus type 3 syndrome, fetal phenothiazine syndrome, fibromatosis multiple non ossifying, fibula aplasia complex brachydactyly, fibular hypoplasia scapulo pelvic dysplasia absent, Fitz-Hugh-Curtis syndrome, focal alopecia congenital megalencephaly, focal or multifocal malformations in neuronal migration, foix chavany Marie syndrome, Fontaine farriaux blanckaert syndrome, Fraser Jequier Chen syndrome, Freiberg disease, Friedman Goodman syndrome, frontonasal malformation cloacal exstrophy, frontonasal dysplasia Klippel feil syndrome, frontonasal dysplasia phocomelic upper limbs, Fryns Fabry Remans syndrome, Fryns Smeets Thiry syndrome, Fuchs atrophia gyrata chorioideae et retinae, Fukuda-Miyanomae-Nakata syndrome, Fuqua Berkovitz syndrome, Garret-Tripp syndrome, gas bloat syndrome, Gaucher ichthyosis restrictive dermopathy, gershinibaruch Leibo syndrome, Ghose-Sachdev-Kumar syndrome, gigantism advanced bone age hoarse cry, glossopalatine ankylosis micrognathia ear anomalies, goldstein hutt syndrome, goniodysgenesis intellectual disability short stature, green sandford davison syndrome, grix Blankenship Peterson syndrome, Ho-Kaufman-McAlister syndrome, Jaffer-Beighton syndrome, Judge Misch wright syndrome, Kashani-Strom-Utley syndrome, Kasznica-Carlson-Coppedge syndrome, Katsantoni-Papadakou-Lagoyanni syndrome, Kocher-debre-Semelaigne syndrome, Koone-Rizzo-Elias syndrome, Kozlowski Brown Hardwick syndrome, Kozlowski Ouvrier syndrome, Kozlowski Rafinski Klicharska syndrome, Kozlowski Warren Fisher syndrome, Krauss Herman Holmes syndrome, Krieble Bixler syndrome, Kuster Majewski Hammerstein syndrome, Kuster syndrome, Laugier-Hunziker syndrome, Laurence-Prosser-Rocker syndrome, le Marec-Bracq-Picaud syndrome, levator syndrome, Marinesco-Sjogren-like syndrome, Milner-Khallouf-Gibson syndrome, radio-digito-facial dysplasia, Seckel like syndrome majoor-krakauer type, neonatal aspiration syndrome, muscular fibrosis multifocal obstructed vessels, short stature contractures hypotonia, Alice in Wonderland syndrome, megacystis-microcolon-intestinal hypoperistalsis syndrome, Basilicata-Akhtar syndrome, Liberfarb syndrome, craniofacial dysmorphism, skeletal anomalies, and impaired intellectual development syndrome, cardiac, facial, and digital anomalies with developmental delay, fibrosis, neurodegeneration, and cerebral angiomatosis, Duane anomaly-myopathy-scoliosis syndrome, congenital cataract-severe neonatal hepatopathy-global developmental delay syndrome, infantile hypotonia-oculomotor anomalies-hyperkinetic movements-developmental delay syndrome, acute radiation syndrome, monoclonal mast cell activation syndrome, oculocerebrodental syndrome, syndromic congenital sodium diarrhea, congenital brachyesophagus-intrathoracic stomach-vertebral anomalies syndrome, intellectual disability-cardiac anomalies-short stature-joint laxity syndrome, intrauterine growth restriction-congenital multiple café-au-lait macules-increased sister chromatid exchange syndrome, frontonasal dysplasia-bifid nose-upper limb anomalies syndrome, microcephaly-facial dysmorphism-ocular anomalies-multiple congenital anomalies syndrome, diaphragmatic hernia-short bowel-asplenia syndrome, warts-immunodeficiency-lymphedema-anogenital dysplasia syndrome, Cramp-fasciculation syndrome, choanal atresia-athelia-hypothyroidism-delayed puberty-short stature syndrome, blepharophimosis-intellectual disability syndrome/genitopatellar overlap syndrome, CCNK-related neurodevelopmental disorder-severe intellectual disability-facial dysmorphism syndrome, cerebellar hypoplasia-intellectual disability-congenital microcephaly-dystonia-anemia-growth retardation syndrome, KLHL7-related Bohring-Opitz-like syndrome, KLHL7-related cold-induced sweating-like syndrome, KAT6B-related multiple congenital anomalies syndrome, oculogastrointestinal-neurodevelopmental syndrome, spastic paraparesis-cataracts-speech delay syndrome, Ruzicka-Goerz-Anton syndrome, Sammartino-Decreccio syndrome, Samson-Gardner syndrome, Samson-Viljoen syndrome, Sanderson-Fraser syndrome, Sandhaus-Ben-Ami syndrome, prostatic malacoplakia associated with prostatic abscess, Saul-Wilkes-Stevenson syndrome, macrogyria, pseudobulbar palsy and intellectual disability, Schwartz-Cohen-addad-Lambert syndrome, Schlegelberger-Grote syndrome, Schrander-stumpel-Theunissen-Hulsmans syndrome, Saal-Bulas syndrome, Sackey-Sakati-Aur syndrome, Slti-Salem syndrome, Zerres Rietschel Majewski syndrome, Zazam Sheriff Phillips syndrome, Zadik-Barak-Levin syndrome, weinstein kliman scully syndrome, thickened earlobes with conductive deafness from incus-stapes abnormalities, ichthyosis linearis circumflexa, infantile striato thalamic degeneration, Landy-Donnai syndrome, merlob grunebaum reisner syndrome, Pavone Fiumara Rizzo syndrome, pfeiffer rockelein syndrome, Pfeiffer Tietze Welte syndrome, phosphoribosylpyrophosphate synthetase deficiency, piepkorn karp hickok syndrome, podder-tolmie syndrome, pointer syndrome, richieri-costa guion-almeida cohen syndrome, Rubinstein Taybi like syndrome, ruvalcaba churesigaew myhre syndrome, short limb dwarf lethal colavita kozlowski type, Mallory-Weiss syndrome, superior vena cava syndrome, piriformis syndrome, engraftment syndrome, Adams-Stokes syndrome, Leriche syndrome, multiple organ dysfunction syndrome, posterior leukoencephalopathy syndrome, cardio-renal syndrome, Rahman syndrome, X-linked keloid scarring-reduced joint mobility-increased optic cup-to-disc ratio syndrome, retinitis pigmentosa-hearing loss-premature aging-short stature-facial dysmorphism syndrome, congenital labioscrotal agenesis-cerebellar malformation-corneal dystrophy-facial dysmorphism syndrome, Lopes-Maciel-Rodan syndrome, Stankiewicz-Isidor syndrome, Skraban-Deardorff syndrome, joint laxity, short stature, and myopia, Sweeney-Cox syndrome, Alkuraya-Kucinskas syndrome, Jaberi-Elahi syndrome, neurodevelopmental disorder with regression, abnormal movements, loss of speech, and seizures, hearing impairment and infertile male syndrome, cardiocutaneous syndrome, neonatal diabetes, congenital sensorineural hearing loss and congenital cataracts, cardioectodermal syndrome, cannabinoid hyperemesis syndrome, retrograde cricopharyngeus dysfunction, Zinner syndrome, retinal dystrophy-ataxia-pituitary hormone abnormality-hypogonadism syndrome, IFAP syndrome, DICER1-related tumor predisposition, Roberts-SC phocomelia syndrome, carcinoid syndrome, Bonnevie-Ullrich syndrome, NKX2-1 related choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction, RNU4ATAC spectrum disorder, syndromic congenital heart disease, hand-foot syndrome, central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease, gastrointestinal defects and immunodeficiency syndrome 1, achalasia-alacrima syndrome, black locks with albinism and deafness syndrome, Birt-Hogg-Dube syndrome, trigeminal trophic syndrome, developmental and/or epileptic encephalopathy with spike-wave activation in sleep, syndromic microspherophakia, painful legs and moving toes syndrome, congenital aphakia-iris hypoplasia-microphthalmia-microcornea syndrome, hereditary persistence of fetal hemoglobin-intellectual disability syndrome, developmental delay-immunodeficiency-leukoencephalopathy-hypohomocysteinemia syndrome, primary hypomagnesemia-generalized seizures-intellectual disability-obesity syndrome, post-cardiac arrest syndrome, early-onset obesity-hyperphagia-severe developmental delay syndrome, hereditary alpha tryptasemia syndrome, KINSSHIP syndrome, developmental delay, hypotrophy, and dysmorphic features without moebius syndrome, breast implant illness, cataracts, hearing impairment, nephrotic syndrome, and enterocolitis, craniosynostosis-facial dysmorphism-chiari-1 malformation-developmental and language delay syndrome, MYT1L-related developmental delay-intellectual disability-obesity syndrome, Houge-Janssens syndrome, xerosis and growth failure with immune and pulmonary dysfunction syndrome, Fliedner-Zweier syndrome, Lui-Jee-Baron syndrome, Long-Olsen-Distelmaier syndrome, Tan-Almurshedi syndrome, diabetes, deafness, developmental delay, and short stature syndrome, Alfadhel syndrome, Hoxha-Aliu syndrome, cleft palate-congenital heart defect-intellectual disability syndrome, congenital insensitivity to pain syndrome, Marsili type, Yuksel-Vogel-Bauer syndrome, polydactyly-macrocephaly syndrome, pyoderma gangrenosum-acne-hidradenitis suppurativa-ankylosing spondylitis syndrome, psoriatic arthritis-pyoderma gangrenosum-acne-hidradenitis suppurativa syndrome, megalencephaly-polydactyly syndrome, Leigh syndrome, mitochondrial, auroneurodental syndrome, orofacial clefting-cardiac anomalies-facial dysmorphism syndrome, Grisel syndrome, arterial tortuosity-bone fragility syndrome, dialysis disequilibrium syndrome, brain abnormalities-severe developmental delay-facial dysmorphism-intellectual disability syndrome due to MEF2C mutation, Kariminejad neurodevelopmental syndrome, myelofibrosis, congenital, with anemia, neutropenia, developmental delay, and ocular abnormalities, brain malformation renal syndrome, myopathy with myalgia, increased serum creatine kinase, and with or without episodic rhabdomyolysis 2, Karayol-Borroto-Haghshenas neurodevelopmental syndrome, neurodegeneration, infantile-onset, with optic atrophy and brain abnormalities, Morimoto-Ryu-Malicdan neuromuscular syndrome, neurodevelopmental disorder with dysmorphic facies, absent speech and ambulation, and brain abnormalities, neurodevelopmental disorder with variable familial hypercholanemia, Pan-Chung-Bellen syndrome, telangiectasia, impaired intellectual development, microcephaly, metaphyseal dysplasia, eye abnormalities, and short stature, Muggenthaler-Chowdhury-Chioza syndrome, Tayoun-Maawali syndrome, ragopathy, cardiovascular-kidney-metabolic syndrome, craniofaciocardiohepatic syndrome, FICUS syndrome, Li-Takada-Miyake syndrome, Guillouet-Gordon syndrome, ICHAD syndrome, cataract, alopecia, oral mucosal disorder, and psoriasis-like syndrome, RAC2-related combined immunodeficiency-bronchiectasis-cancer-predisposing syndrome, oculovertebral syndrome, Alsahan-Harris syndrome, Ververi-Brady syndrome, Dursun-Ozgul neurodevelopmental syndrome, immune dysregulation, neurodevelopmental defects, and colitis, Harel-Tora neurodevelopmental syndrome, Valence-Farazi cerebellar ataxia syndrome, dyschromatosis, ichthyosis, deafness, and atopic disease, Ramond-Elliott neurodevelopmental syndrome, STAD syndrome, craniosynostosis-scoliosis syndrome, loin pain hematuria syndrome, IRF6-related condition, linkeropathy, NDUFB11-related disorders, CRYAB-related myofibrillar myopathy-cataract-cardiomyopathy spectrum disorder, TSEN2-related neurodevelopmental disorder with or without thrombotic microangiopathy, antiphospholipid syndrome

Subtypes (8): congenital myasthenic syndrome with tubular aggregates, myasthenia, congenital, refractory to acetylcholinesterase inhibitors, congenital myasthenic syndrome 5, congenital myasthenic syndrome 15, postsynaptic congenital myasthenic syndrome, myasthenic syndrome, congenital, 7B, presynaptic, autosomal recessive, myasthenic syndrome, congenital, 22, presynaptic congenital myasthenic syndrome

Genetics & variants

GWAS landscape

No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.

Variant details and genetic-evidence tiers

ClinVar germline variants

600 retrieved; paginated sample, class counts are floors:

201 uncertain significance, 107 conflicting classifications of pathogenicity, 89 pathogenic/likely pathogenic, 57 likely pathogenic, 46 likely benign, 39 pathogenic, 39 benign, 20 benign/likely benign, 2 not provided

ClinVarVariant (HGVS)GeneClassificationReview
126556NM_198576.4(AGRN):c.1057C>T (p.Gln353Ter)AGRNPathogenicno assertion criteria provided
18241NM_198576.4(AGRN):c.5125G>C (p.Gly1709Arg)AGRNPathogenicno assertion criteria provided
243039NM_198576.4(AGRN):c.5023G>A (p.Gly1675Ser)AGRNPathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
2430411p36.33 deletion (0.48 Mb)AGRNPathogenicno assertion criteria provided
666960NM_198576.4(AGRN):c.574_578dup (p.Ser194fs)AGRNPathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
1075930NM_000080.4(CHRNE):c.529_551del (p.Glu177fs)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
1076387NM_000080.4(CHRNE):c.84T>G (p.Tyr28Ter)C17orf107Pathogeniccriteria provided, multiple submitters, no conflicts
1452179NM_000080.4(CHRNE):c.372C>G (p.Tyr124Ter)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
18345NM_000080.4(CHRNE):c.500G>T (p.Arg167Leu)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
18352NM_000080.4(CHRNE):c.721C>T (p.Leu241Phe)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
18357NM_000080.4(CHRNE):c.614_620del (p.Trp205fs)C17orf107Pathogeniccriteria provided, multiple submitters, no conflicts
2145376NM_000080.4(CHRNE):c.687del (p.Asp229fs)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
243031NM_000080.4(CHRNE):c.1327delC17orf107Pathogeniccriteria provided, multiple submitters, no conflicts
243033NC_000017.11:g.4902680_4903969delinsTCTGGATGCGC17orf107Pathogenicno assertion criteria provided
2439102NM_000080.4(CHRNE):c.355C>T (p.Gln119Ter)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
2680779NM_000080.4(CHRNE):c.876del (p.Ile294fs)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
2680794NM_000080.4(CHRNE):c.209_210del (p.Leu70fs)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
372325NM_000080.4(CHRNE):c.905C>G (p.Pro302Arg)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
429303NM_000080.4(CHRNE):c.183_187dup (p.Leu63fs)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
449451NM_000080.4(CHRNE):c.934_936del (p.Met312del)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
465864NM_000080.4(CHRNE):c.764C>T (p.Ser255Leu)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
4816893NM_000080.4(CHRNE):c.197_198del (p.Lys66fs)C17orf107Pathogeniccriteria provided, single submitter
4816917NM_000080.4(CHRNE):c.414G>A (p.Trp138Ter)C17orf107Pathogeniccriteria provided, single submitter
534249NM_000080.4(CHRNE):c.293T>C (p.Leu98Pro)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
567393NM_000080.4(CHRNE):c.794del (p.Pro265fs)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
582326NM_000080.4(CHRNE):c.918-1G>AC17orf107Pathogeniccriteria provided, multiple submitters, no conflicts
647119NM_000080.4(CHRNE):c.115dup (p.Ser39fs)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
651789NM_000080.4(CHRNE):c.684_687del (p.Asp229fs)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
694659NM_000080.4(CHRNE):c.442T>A (p.Cys148Ser)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
804695NM_000080.4(CHRNE):c.529_531del (p.Glu177del)C17orf107Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 51 · Orphanet: 52 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0

GenCC gene–disease validity (cohort genes)

the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.

GeneClassificationInheritanceDiseaseRecords
CHRNEDefinitiveAutosomal recessivecongenital myasthenic syndrome8
GMPPBDefinitiveAutosomal recessivemuscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1412
PLECStrongAutosomal recessivecongenital myasthenic syndrome18
UNC50ModerateAutosomal recessivecongenital myasthenic syndrome2
CHD8LimitedAutosomal dominantcongenital myasthenic syndrome4
RPH3ALimitedAutosomal recessivecongenital myasthenic syndrome4
UNC13ALimitedUnknowncongenital nervous system disorder3

Orphanet rare-disease linkage (cohort genes)

GeneOrphanet IDRare disease
CHRNEOrphanet:98913Postsynaptic congenital myasthenic syndrome
CHD8Orphanet:26122914q11.2 microduplication syndrome
CHD8Orphanet:642675CHD8 overgrowth syndrome
GMPPBOrphanet:353327Congenital myasthenic syndrome with glycosylation defect
GMPPBOrphanet:363623GMPPB-related limb-girdle muscular dystrophy R19
GMPPBOrphanet:370959Congenital muscular dystrophy with cerebellar involvement
GMPPBOrphanet:370968Congenital muscular dystrophy with intellectual disability
GMPPBOrphanet:588Muscle-eye-brain disease
UNC13AOrphanet:803Amyotrophic lateral sclerosis
PLECOrphanet:1114Aplasia cutis congenita
PLECOrphanet:158684Epidermolysis bullosa simplex with pyloric atresia
PLECOrphanet:254361Plectin-related limb-girdle muscular dystrophy R17
PLECOrphanet:257Epidermolysis bullosa simplex with muscular dystrophy
PLECOrphanet:79401PLEC-related intermediate epidermolysis bullosa simplex without extracutaneous involvement
RYR1Orphanet:169186Autosomal recessive centronuclear myopathy
RYR1Orphanet:169189Autosomal dominant centronuclear myopathy
RYR1Orphanet:178145Moderate multiminicore disease with hand involvement
RYR1Orphanet:324581Benign Samaritan congenital myopathy
RYR1Orphanet:33108Lethal multiple pterygium syndrome
RYR1Orphanet:423Malignant hyperthermia of anesthesia
RYR1Orphanet:424107Congenital myopathy with myasthenic-like onset
RYR1Orphanet:466650Exercise-induced malignant hyperthermia
RYR1Orphanet:597Central core disease
RYR1Orphanet:700188Calf-predominant weakness-gastrocnemius medialis atrophy-distal myopathy
RYR1Orphanet:98905Congenital multicore myopathy with external ophthalmoplegia
RYR1Orphanet:99741King-Denborough syndrome
SCN4AOrphanet:681Hypokalemic periodic paralysis
SCN4AOrphanet:682Hyperkalemic periodic paralysis
SCN4AOrphanet:684Paramyotonia congenita of Von Eulenburg
SCN4AOrphanet:98913Postsynaptic congenital myasthenic syndrome
SCN4AOrphanet:99734Myotonia fluctuans
SCN4AOrphanet:99735Myotonia permanens
SCN4AOrphanet:99736Acetazolamide-responsive myotonia
SYT2Orphanet:98914Presynaptic congenital myasthenic syndromes
CHATOrphanet:98914Presynaptic congenital myasthenic syndromes
CHRNA1Orphanet:33108Lethal multiple pterygium syndrome
CHRNA1Orphanet:98913Postsynaptic congenital myasthenic syndrome
CHRNDOrphanet:33108Lethal multiple pterygium syndrome
CHRNDOrphanet:98913Postsynaptic congenital myasthenic syndrome
CHRNGOrphanet:2990Autosomal recessive multiple pterygium syndrome
CHRNGOrphanet:33108Lethal multiple pterygium syndrome
COLQOrphanet:98915Synaptic congenital myasthenic syndrome
DOK7Orphanet:98913Postsynaptic congenital myasthenic syndrome
DOK7Orphanet:994Fetal akinesia deformation sequence
AGRNOrphanet:98913Postsynaptic congenital myasthenic syndrome
AGRNOrphanet:98914Presynaptic congenital myasthenic syndromes
GFPT1Orphanet:353327Congenital myasthenic syndrome with glycosylation defect
LAMB2Orphanet:2670Pierson syndrome
LAMB2Orphanet:98915Synaptic congenital myasthenic syndrome
RAPSNOrphanet:33108Lethal multiple pterygium syndrome

Cohort genes → proteins

23 cohort genes, 23 distinct canonical proteins.

Evidence partition

SubsetGenes
multi_evidence23

Cohort genes (full)

SymbolHGNCEnsemblUniProtNameEvidence
CHRNEHGNC:1966ENSG00000108556Q04844Acetylcholine receptor subunit epsilongencc,clinvar
UNC50HGNC:16046ENSG00000115446Q53HI1Protein unc-50 homologgencc
RPH3AHGNC:17056ENSG00000089169Q9Y2J0Rabphilin-3Agencc
CHD8HGNC:20153ENSG00000100888Q9HCK8ATP-dependent chromatin remodeler CHD8gencc
GMPPBHGNC:22932ENSG00000173540Q9Y5P6Mannose-1-phosphate guanylyltransferase catalytic subunit betagencc
UNC13AHGNC:23150ENSG00000130477Q9UPW8Protein unc-13 homolog Agencc
PLECHGNC:9069ENSG00000178209Q15149Plectingencc
RYR1HGNC:10483ENSG00000196218P21817Ryanodine receptor 1clinvar
SCN4AHGNC:10591ENSG00000007314P35499Sodium channel protein type 4 subunit alphaclinvar
SYT2HGNC:11510ENSG00000143858Q8N9I0Synaptotagmin-2clinvar
MINK1HGNC:17565ENSG00000141503Q8N4C8Misshapen-like kinase 1clinvar
CHATHGNC:1912ENSG00000070748P28329Choline O-acetyltransferaseclinvar
CHRNA1HGNC:1955ENSG00000138435P02708Acetylcholine receptor subunit alphaclinvar
CHRNDHGNC:1965ENSG00000135902Q07001Acetylcholine receptor subunit deltaclinvar
CHRNGHGNC:1967ENSG00000196811P07510Acetylcholine receptor subunit gammaclinvar
COLQHGNC:2226ENSG00000206561Q9Y215Acetylcholinesterase collagenic tail peptideclinvar
DOK7HGNC:26594ENSG00000175920Q18PE1Protein Dok-7clinvar
TAPBPLHGNC:30683ENSG00000139192Q9BX59Tapasin-related proteinclinvar
AGRNHGNC:329ENSG00000188157O00468Agrinclinvar
C17orf107HGNC:37238ENSG00000205710Q6ZR85Uncharacterized protein C17orf107clinvar
GFPT1HGNC:4241ENSG00000198380Q06210Glutamine–fructose-6-phosphate aminotransferase [isomerizing] 1clinvar
LAMB2HGNC:6487ENSG00000172037P55268Laminin subunit beta-2clinvar
RAPSNHGNC:9863ENSG00000165917Q1370243 kDa receptor-associated protein of the synapseclinvar

Cohort function summary

Lead sentence per gene, UniProt-curated.

SymbolProtein nameFunction (lead sentence)
CHRNEAcetylcholine receptor subunit epsilonAfter binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
UNC50Protein unc-50 homologInvolved in the cell surface expression of neuronal nicotinic receptors.
RPH3ARabphilin-3APlays an essential role in docking and fusion steps of regulated exocytosis.
CHD8ATP-dependent chromatin remodeler CHD8ATP-dependent chromatin-remodeling factor, it slides nucleosomes along DNA; nucleosome sliding requires ATP.
GMPPBMannose-1-phosphate guanylyltransferase catalytic subunit betaCatalytic subunit of the GMPPA-GMPPB mannose-1-phosphate guanylyltransferase complex.
UNC13AProtein unc-13 homolog APlays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway.
PLECPlectinInterlinks intermediate filaments with microtubules and microfilaments and anchors intermediate filaments to desmosomes or hemidesmosomes.
RYR1Ryanodine receptor 1Cytosolic calcium-activated calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytosol and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules.
SCN4ASodium channel protein type 4 subunit alphaPore-forming subunit of Nav1.4, a voltage-gated sodium (Nav) channel that directly mediates the depolarizing phase of action potentials in excitable membranes.
SYT2Synaptotagmin-2Exhibits calcium-dependent phospholipid and inositol polyphosphate binding properties.
MINK1Misshapen-like kinase 1Serine/threonine kinase which acts as a negative regulator of Ras-related Rap2-mediated signal transduction to control neuronal structure and AMPA receptor trafficking.
CHATCholine O-acetyltransferaseCatalyzes the reversible synthesis of acetylcholine (ACh) from acetyl CoA and choline at cholinergic synapses.
CHRNA1Acetylcholine receptor subunit alphaUpon acetylcholine binding, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
CHRNDAcetylcholine receptor subunit deltaAfter binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
CHRNGAcetylcholine receptor subunit gammaAfter binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
COLQAcetylcholinesterase collagenic tail peptideAnchors the catalytic subunits of asymmetric AChE to the synaptic basal membrane, and is therefore involved in the down-regulation of colinergic synaptic transmission.
DOK7Protein Dok-7Probable muscle-intrinsic activator of MUSK that plays an essential role in neuromuscular synaptogenesis.
TAPBPLTapasin-related proteinComponent of the antigen processing and presentation pathway, which binds to MHC class I coupled with beta2-microglobulin/B2M.
AGRNAgrinDepending on alternative splicing and post-translational modifications, it has a role in different processes, including neuromuscular junction formation and maintenance, and regulation of neurite outgrowth.
GFPT1Glutamine–fructose-6-phosphate aminotransferase [isomerizing] 1Rate-limiting enzyme of the hexosamine biosynthetic pathway (HBP) that catalyzes the formation of glucosamine-6-phosphate from fructose-6-phosphate and glutamine, thereby controlling the flux of glucose into this pathway.
LAMB2Laminin subunit beta-2Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
RAPSN43 kDa receptor-associated protein of the synapsePostsynaptic protein required for clustering of nicotinic acetylcholine receptors (nAChRs) at the neuromuscular junction.

Protein-family classification

Druggable: 7 · Difficult: 4 · Unknown: 12 · Druggable fraction: 0.3

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

FamilyGenesFoldFDR
Ion channel29.7×0.125
Enzyme (other)31.6×0.786
Scaffold/PPI21.5×0.786
Antibody/Immunoglobulin11.3×0.786
Kinase11.2×0.786
Other/Unknown120.9×0.786
Transcription factor20.7×0.786

Per-gene assignment

SymbolFamilyDruggable?ECInterPro (top 3)
CHRNEOther/UnknownnoNicotinic_acetylcholine_rcpt, Neurotrans-gated_channel_TM, Neur_channel
UNC50Other/UnknownnoUNC-50
RPH3ATranscription factornoC2_dom, Synaptotagmin, Rab_BD
CHD8Other/UnknownnoSNF2_N, Chromo/chromo_shadow_dom, Helicase_C-like
GMPPBEnzyme (other)yes2.7.7.13NTP_transferase_dom, Hexapep_transf_CS, Nucleotide-diphossugar_trans
UNC13AOther/UnknownnoC2_dom, PKC_DAG/PE, MUN_dom
PLECScaffold/PPInoPlectin_repeat, SH3_domain, Actinin_actin-bd_CS
RYR1Ion channelyesRIH_dom, B30.2/SPRY, Ryanodine_rcpt
SCN4AIon channelyesNa_channel_asu, Ion_trans_dom, Na_channel_a4su_mammal
SYT2Other/UnknownnoC2_dom, Synaptotagmin, C2_domain_sf
MINK1KinaseyesProt_kinase_dom, CNH_dom, Ser/Thr_kinase_AS
CHATEnzyme (other)yes2.3.1.6Carn_acyl_trans, CAT-like_dom_sf, Cho/carn_acyl_trans_1_2
CHRNA1Other/UnknownnoNicotinic_acetylcholine_rcpt, Neurotrans-gated_channel_TM, Neur_channel
CHRNDOther/UnknownnoNicotinic_acetylcholine_rcpt, Neurotrans-gated_channel_TM, Neur_channel
CHRNGOther/UnknownnoNicotinic_acetylcholine_rcpt, Neurotrans-gated_channel_TM, Neur_channel
COLQOther/UnknownnoCollagen, Myxo_disulph_rpt, Collagen_superfamily
DOK7Scaffold/PPInoPH_domain, IRS_PTB, PH-like_dom_sf
TAPBPLAntibody/ImmunoglobulinyesIg/MHC_CS, Ig_C1-set, Ig_sub
AGRNOther/UnknownnoSEA_dom, EGF, Laminin_G
C17orf107Other/UnknownnoC17orf107
GFPT1Enzyme (other)yes2.6.1.16SIS_dom, GFAT, GATase_2_dom
LAMB2Other/UnknownnoEGF, LE_dom, Laminin_N
RAPSNTranscription factornoPostsynaptic, Znf_RING, TPR-like_helical_dom_sf

Expression context

Cohort genes with no expression data: 0.

17 cohort genes are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

BucketGenes
narrow (1-5 tissues)0
moderate (6-20)0
broad (>20)23
unknown0

Top tissues across cohort

TissueCohort genes
hindlimb stylopod muscle6
gastrocnemius6
adenohypophysis4
right atrium auricular region3
muscle of leg3
left lobe of thyroid gland2
sural nerve2
gluteal muscle2
male germ line stem cell (sensu Vertebrata) in testis2
granulocyte2
right uterine tube2
apex of heart2
right lobe of thyroid gland2
cardiac atrium1
palpebral conjunctiva1
Brodmann (1909) area 101
prefrontal cortex1
right frontal lobe1
cortical plate1
ventricular zone1

Per-gene tissue summary (top 30)

SymbolBgee breadthFANTOM5 breadthSCXATop tissues
CHRNE162broadyesright atrium auricular region, cardiac atrium, adenohypophysis
UNC50294ubiquitousmarkerpalpebral conjunctiva, adenohypophysis, left lobe of thyroid gland
RPH3A194tissue_specificmarkerright frontal lobe, prefrontal cortex, Brodmann (1909) area 10
CHD8283ubiquitousmarkersural nerve, ventricular zone, cortical plate
GMPPB172ubiquitousmarkerbody of pancreas, adenohypophysis, mucosa of transverse colon
UNC13A193broadmarkerright hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex
PLEC283ubiquitousmarkersural nerve, hindlimb stylopod muscle, tibial nerve
RYR1214broadmarkergluteal muscle, gastrocnemius, hindlimb stylopod muscle
SCN4A153tissue_specificyeshindlimb stylopod muscle, gastrocnemius, skeletal muscle tissue of rectus abdominis
SYT2165tissue_specificyesolfactory bulb, pons, type B pancreatic cell
MINK1292ubiquitousmarkerCA1 field of hippocampus, lower esophagus mucosa, skin of leg
CHAT68tissue_specificmarkerprimordial germ cell in gonad, male germ line stem cell (sensu Vertebrata) in testis, putamen
CHRNA1149broadmarkergastrocnemius, gluteal muscle, muscle of leg
CHRND86tissue_specificyesgastrocnemius, muscle of leg, hindlimb stylopod muscle
CHRNG54tissue_specificmarkerpancreatic ductal cell, gastrocnemius, muscle of leg
COLQ178broadmarkerright uterine tube, hindlimb stylopod muscle, granulocyte
DOK7180broadyesapex of heart, tibialis anterior, right atrium auricular region
TAPBPL258ubiquitousmarkergranulocyte, left lobe of thyroid gland, right lobe of thyroid gland
AGRN271ubiquitousmarkerright uterine tube, metanephros cortex, renal medulla
C17orf107131broadyesadenohypophysis, pituitary gland, right atrium auricular region
GFPT1287ubiquitousmarkermucosa of sigmoid colon, colonic mucosa, secondary oocyte
LAMB2268ubiquitousmarkerapex of heart, right lobe of thyroid gland, stromal cell of endometrium
RAPSN159tissue_specificmarkerhindlimb stylopod muscle, male germ line stem cell (sensu Vertebrata) in testis, gastrocnemius

Protein interactions among cohort

Intra-cohort edges: 36.

Hub genes (top 10 by interactor count)

SymbolInteractor count
CHD84,791
PLEC3,529
AGRN3,117
GFPT12,798
GMPPB2,559
RYR12,177
SYT21,991
MINK11,829
CHAT1,743
SCN4A1,704

Intra-cohort edges

ABSources
AGRNCHRNDstring_interaction
AGRNCHRNGstring_interaction
AGRNCOLQstring_interaction
AGRNDOK7string_interaction
AGRNRAPSNstring_interaction
C17orf107CHRNEstring_interaction
CHRNA1CHRNDbiogrid_interaction, string_interaction
CHRNA1CHRNEbiogrid_interaction, string_interaction
CHRNA1CHRNGbiogrid_interaction, string_interaction
CHRNA1COLQstring_interaction
CHRNA1DOK7string_interaction
CHRNA1GFPT1string_interaction
CHRNA1RAPSNstring_interaction
CHRNDCOLQstring_interaction
CHRNDDOK7string_interaction
CHRNDGFPT1string_interaction
CHRNDRAPSNstring_interaction
CHRNECOLQintact, string_interaction
CHRNEDOK7string_interaction
CHRNEGFPT1string_interaction
CHRNEGMPPBstring_interaction
CHRNEMINK1string_interaction
CHRNERAPSNstring_interaction
CHRNESCN4Astring_interaction
CHRNGCOLQstring_interaction
CHRNGDOK7string_interaction
CHRNGRAPSNstring_interaction
COLQDOK7string_interaction
COLQGFPT1string_interaction
COLQRAPSNstring_interaction
COLQSCN4Astring_interaction
DOK7GFPT1string_interaction
DOK7RAPSNstring_interaction
DOK7SCN4Astring_interaction
GFPT1GMPPBstring_interaction
GFPT1RAPSNstring_interaction

Structural data

PDB: 14 · AlphaFold-only: 9 · No structure: 0

Cohort genes with PDB structures (top 30)

SymbolUniProtPDB entries
GFPT1Q0621016
CHRNA1P0270815
PLECQ1514914
CHRNEQ0484413
CHRNDQ0700113
CHATP283298
GMPPBQ9Y5P63
SCN4AP354993
TAPBPLQ9BX593
CHD8Q9HCK82
RYR1P218172
SYT2Q8N9I01
COLQQ9Y2151
AGRNO004681

AlphaFold-only cohort genes (top 30 by pLDDT)

SymbolUniProtpLDDT
RAPSNQ1370293.29
UNC50Q53HI188.86
CHRNGP0751081.91
LAMB2P5526875.94
UNC13AQ9UPW873.58
RPH3AQ9Y2J069.79
DOK7Q18PE165.61
MINK1Q8N4C864.32
C17orf107Q6ZR8558.75

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 100. Enrichment computed across 23 evidence-associated genes (15 with Reactome annotation).

Pathways by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 15 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

PathwayCohort genesFoldFDRSample cohort genes
Presynaptic nicotinic acetylcholine receptors4253.8×6e-08CHRNE, CHRNA1, CHRND, CHRNG
Acetylcholine binding and downstream events4217.5×6e-08CHRNE, CHRNA1, CHRND, CHRNG
Postsynaptic nicotinic acetylcholine receptors4217.5×6e-08CHRNE, CHRNA1, CHRND, CHRNG
Highly sodium permeable postsynaptic acetylcholine nicotinic receptors3326.3×2e-06CHRNE, CHRND, CHRNG
Neurotransmitter receptors and postsynaptic signal transmission426.7×2e-04CHRNE, CHRNA1, CHRND, CHRNG
Neuronal System514.8×2e-04CHRNE, SYT2, CHRNA1, CHRND, CHRNG
Transmission across Chemical Synapses420.3×5e-04CHRNE, CHRNA1, CHRND, CHRNG
Formation of the dystrophin-glycoprotein complex (DGC)241.1×0.013AGRN, LAMB2
Defective GFPT1 causes CMSTA11761.3×0.015GFPT1
Toxicity of botulinum toxin type B (botB)1253.8×0.036SYT2
Non-integrin membrane-ECM interactions220.6×0.036AGRN, LAMB2
ECM proteoglycans220.0×0.036AGRN, LAMB2
Synthesis of GDP-mannose1126.9×0.058GMPPB
Cardiac conduction214.5×0.058RYR1, SCN4A
Neurotoxicity of clostridium toxins195.2×0.065SYT2
Synthesis of UDP-N-acetyl-glucosamine195.2×0.065GFPT1
Highly calcium permeable nicotinic acetylcholine receptors184.6×0.068CHRNA1
Type I hemidesmosome assembly169.2×0.068PLEC
Highly calcium permeable postsynaptic nicotinic acetylcholine receptors169.2×0.068CHRNA1
Early SARS-CoV-2 Infection Events169.2×0.068AGRN
Chondroitin sulfate/dermatan sulfate metabolism163.4×0.068AGRN
Caspase-mediated cleavage of cytoskeletal proteins163.4×0.068PLEC
Muscle contraction210.3×0.068RYR1, SCN4A
Defective EXT2 causes exostoses 2154.4×0.070AGRN
Defective EXT1 causes exostoses 1, TRPS2 and CHDS154.4×0.070AGRN
Uptake and actions of bacterial toxins154.4×0.070SYT2
Diseases associated with glycosaminoglycan metabolism150.8×0.072AGRN
Acetylcholine Neurotransmitter Release Cycle144.8×0.076CHAT
MET promotes cell motility140.1×0.076LAMB2
Attachment and Entry140.1×0.076AGRN

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 22 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO termCohort genesFoldFDRSample cohort genes
acetylcholine receptor signaling pathway4113.5×3e-06CHRNE, CHRNA1, CHRND, CHRNG
neuromuscular junction development495.8×3e-06CHRNA1, DOK7, AGRN, LAMB2
skeletal muscle contraction492.8×3e-06CHRNE, CHRNA1, CHRND, CHRNG
membrane depolarization492.8×3e-06CHRNE, CHRNA1, CHRND, CHRNG
muscle contraction547.3×3e-06CHRNE, RYR1, SCN4A, CHRND, CHRNG
synaptic transmission, cholinergic3109.4×7e-05CHRNE, CHRNA1, RAPSN
monoatomic ion transmembrane transport437.8×8e-05CHRNE, CHRNA1, CHRND, CHRNG
chemical synaptic transmission517.6×2e-04CHRNE, MINK1, CHRND, CHRNG, RAPSN
skeletal muscle tissue growth2255.3×4e-04CHRNA1, CHRND
musculoskeletal movement2255.3×4e-04CHRNA1, CHRND
skeletal muscle acetylcholine-gated channel clustering2170.2×9e-04COLQ, RAPSN
calcium-dependent activation of synaptic vesicle fusion2117.8×0.002SYT2, RPH3A
synaptic vesicle priming273.0×0.004RPH3A, UNC13A
neurotransmitter receptor localization to postsynaptic specialization membrane273.0×0.004DOK7, RAPSN
positive regulation of dendrite extension266.6×0.005SYT2, UNC13A
receptor clustering256.7×0.006DOK7, AGRN
neuromuscular synaptic transmission254.7×0.006CHAT, CHRNA1
skeletal muscle fiber development249.4×0.007RYR1, PLEC
neuromuscular process247.9×0.007CHRNA1, CHRND
negative regulation of antigen processing and presentation of peptide antigen via MHC class I1766.0×0.008TAPBPL
protein-containing complex organization1766.0×0.008PLEC
positive regulation of synaptic assembly at neuromuscular junction1766.0×0.008AGRN
metanephric glomerular basement membrane development1766.0×0.008LAMB2
regulation of skeletal muscle contraction by action potential1766.0×0.008SCN4A
regulation of postsynaptic membrane organization1766.0×0.008RAPSN
establishment of protein localization to postsynaptic membrane1766.0×0.008RAPSN
actomyosin contractile ring assembly actin filament organization1766.0×0.008PLEC
acetylcholine catabolic process in synaptic cleft1383.0×0.014COLQ
skeletal myofibril assembly1383.0×0.014PLEC
metanephric podocyte development1383.0×0.014LAMB2

Therapeutics

Drug target analysis

Approved (phase 4): 6 · Phase ≥3: 7 · Phased (≥1): 8 · Undrugged: 15

Druggability breadth: 14 of 23 evidence-associated genes (61%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Genes with an approved drug

The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.

SymbolExample approved molecule
CHRNEMECAMYLAMINE
SCN4ACARBAMAZEPINE
MINK1FEDRATINIB
CHRNA1VARENICLINE
CHRNDVARENICLINE
CHRNGVARENICLINE

Top cohort targets by molecule count

SymbolMoleculesMax phase
MINK1474
SCN4A244
CHRNA1124
CHRND104
CHRNG104
CHRNE44
CHD812
CHAT13
UNC5000
RPH3A00

Drugs targeting cohort genes (top 30)

MoleculeMax phaseTargets in cohort
MECAMYLAMINE4CHRNA1, CHRND, CHRNE, CHRNG
NICOTINE4CHRNA1, CHRND, CHRNE, CHRNG
DONEPEZIL4CHRNE
TACRINE4CHRNE
CARBAMAZEPINE4SCN4A
PHENYTOIN4SCN4A
LAMOTRIGINE4SCN4A
RILUZOLE4SCN4A
LIDOCAINE4SCN4A
IMIPRAMINE4SCN4A
SERTINDOLE4SCN4A
PIMOZIDE4SCN4A
NIFEDIPINE4SCN4A
DILTIAZEM4SCN4A
MIBEFRADIL4SCN4A
HALOPERIDOL4SCN4A
MEXILETINE4SCN4A
AMITRIPTYLINE4SCN4A
AMIODARONE4SCN4A
CHLORPROMAZINE4SCN4A
FEDRATINIB4MINK1
AXITINIB4MINK1
SORAFENIB4MINK1
NERATINIB4MINK1
VANDETANIB4MINK1
BOSUTINIB4MINK1
NINTEDANIB4MINK1
SUNITINIB4MINK1
DASATINIB4MINK1
ERLOTINIB4MINK1

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 3.

Cohort genes with ChEMBL bioactivity (full, sorted by assay count)

SymbolAssaysType breakdown
MINK1338Binding:335, Toxicity:2, Functional:1
CHRNA1157Binding:107, Functional:47, ADMET:2, Toxicity:1
SCN4A95Binding:69, Functional:18, ADMET:7, Toxicity:1
CHRND75Binding:44, Functional:31
CHRNG67Binding:36, Functional:31
CHRNE28Binding:26, Functional:2
RYR116Binding:13, Functional:3
PLEC12Binding:12
GFPT18Binding:8
CHD87Binding:7
CHAT7Binding:7
AGRN3Binding:3
RAPSN1Binding:1

Cohort enzymes (BRENDA EC)

SymbolEC numbersNames
GMPPB2.7.7.13mannose-1-phosphate guanylyltransferase
CHAT2.3.1.6choline O-acetyltransferase
GFPT12.6.1.16glutamine-fructose-6-phosphate transaminase (isomerizing)

Cohort genes with high screening signal

≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.

SymbolChEMBL assays
MINK1338
CHRNA1157

Pharmacogenomics

Cohort genes with a PharmGKB record: 23; with CPIC/DPWG dosing guidelines: 1.

Cohort genes with a CPIC/DPWG dosing guideline

SymbolCPIC guidelines
RYR11

Chemical tractability of cohort targets

30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

CompoundMax phaseCohort target (bioactivity)
MECAMYLAMINE4CHRNA1, CHRND, CHRNE, CHRNG
NICOTINE4CHRNA1, CHRND, CHRNE, CHRNG
DONEPEZIL4CHRNE
TACRINE4CHRNE
CARBAMAZEPINE4SCN4A
PHENYTOIN4SCN4A
LAMOTRIGINE4SCN4A
RILUZOLE4SCN4A
LIDOCAINE4SCN4A
IMIPRAMINE4SCN4A
SERTINDOLE4SCN4A
PIMOZIDE4SCN4A
NIFEDIPINE4SCN4A
DILTIAZEM4SCN4A
MIBEFRADIL4SCN4A
HALOPERIDOL4SCN4A
MEXILETINE4SCN4A
AMITRIPTYLINE4SCN4A
AMIODARONE4SCN4A
CHLORPROMAZINE4SCN4A
FEDRATINIB4MINK1
AXITINIB4MINK1
SORAFENIB4MINK1
NERATINIB4MINK1
VANDETANIB4MINK1
BOSUTINIB4MINK1
NINTEDANIB4MINK1
SUNITINIB4MINK1
DASATINIB4MINK1
ERLOTINIB4MINK1

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

TierDefinitionGenesSymbols
AApproved (phase 4 drug)6CHRNE, SCN4A, MINK1, CHRNA1, CHRND, CHRNG
BPhased (≥1) drug, not yet approved2CHD8, CHAT
CDruggable family + PDB, no drug4GMPPB, RYR1, TAPBPL, GFPT1
DDruggable family + AlphaFold only, no drug0
EDifficult family or no structure, no drug11UNC50, RPH3A, UNC13A, PLEC, SYT2, COLQ, DOK7, AGRN, C17orf107, LAMB2 (+1 more)

Undrugged target profiles

15 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

SymbolChEMBL assaysDrugged partners (top 3)
C17orf1070CHRNE
RAPSN1CHRND
UNC500
RPH3A0
GMPPB0
UNC13A0
PLEC12
RYR116
SYT20
COLQ0
DOK70
TAPBPL0
AGRN3
GFPT18
LAMB20

Clinical trials & evidence

Clinical trials

Clinical trials: 12.

Phase distribution (across all retrieved trials)

PhaseTrials
Not specified9
PHASE13

Top trials by phase / activity

NCTPhaseStatusTitle
NCT06436742PHASE1RECRUITINGA Phase 1b Study to Investigate Safety and Tolerability of ARGX-119 in Adult Participants With DOK7-Congenital Myasthenic Syndromes (CMS)
NCT07226726PHASE1RECRUITINGPatients With Congenital Myasthenic Syndrome Will be Treated With Mesenchymal Stem Cell Exosome Solution
NCT01203592PHASE1COMPLETEDEfficacy of Albuterol in the Treatment of Congenital Myasthenic Syndromes
NCT01403402Not specifiedRECRUITINGCongenital Muscle Disease Study of Patient and Family Reported Medical Information
NCT06078553Not specifiedRECRUITINGA Natural History Study in Participants With Congenital Myasthenic Syndromes (CMS) Due to Mutations in DOK7, MUSK, AGRN, or LRP4
NCT00872950Not specifiedAPPROVED_FOR_MARKETING3,4-Diaminopyridine Use in Lambert-Eaton Myasthenic Syndrome(LEMS) and Congenital Myasthenic Syndromes (CMS)
NCT01474980Not specifiedCOMPLETEDPregnancy Outcomes in Congenital Myasthenie Syndrome
NCT02012933Not specifiedNO_LONGER_AVAILABLE3,4-Diaminopyridine for Lambert-Eaton Myasthenic Syndrome (LEMS) and Congenital Myasthenia (CM)
NCT02189720Not specifiedAPPROVED_FOR_MARKETINGExpanded Access Study Amifampridine Phosphate in Lambert-Eaton Myasthenic Syndrome (LEMS),Congenital Myasthenic Syndrome
NCT03062631Not specifiedNO_LONGER_AVAILABLETreatment Use of 3,4 Diaminopyridine in Congenital Myasthenia
NCT05408702Not specifiedCOMPLETEDExercise in Autoimmune Myasthenia Gravis and Myasthenic Syndromes
NCT05687474Not specifiedCOMPLETEDBaby Detect : Genomic Newborn Screening

Drugs tested across these trials (top 30)

MoleculeMax phaseTrials referencing
ALBUTEROL41
AMIFAMPRIDINE PHOSPHATE41
ARGX-11921