Coronary artery disorder
diseaseOn this page
Also known as CADCHD (coronary heart disease)coronary arteriosclerosiscoronary artery diseasecoronary artery disease or disordercoronary diseasecoronary heart diseasedisease of coronary arterydisease or disorder of coronary arterydisorder of coronary artery
Summary
Coronary artery disorder (MONDO:0005010) is a disease (an umbrella term covering 12 Mondo subtypes) with 72 cohort genes (4,081 GWAS associations across 210 studies) and 5,111 clinical trials. Top therapeutic interventions include clopidogrel, prasugrel, and rosuvastatin.
At a glance
- Umbrella term: 12 Mondo subtypes
- Cohort genes: 72
- GWAS associations: 4,081
- ClinVar variants: 14
- Clinical trials: 5,111
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | coronary artery disorder |
| Mondo ID | MONDO:0005010 |
| EFO | EFO:0001645 |
| MeSH | D003324 |
| DOID | DOID:3393 |
| ICD-11 | 1059873720 |
| NCIT | C26732 |
| SNOMED CT | 414024009 |
| UMLS | C1956346 |
| MedGen | 365486 |
| Anatomy (UBERON) | UBERON:0000948, UBERON:0001621 |
| Is cancer (heuristic) | no |
Also known as: CAD · CHD (coronary heart disease) · coronary arteriosclerosis · coronary artery disease · coronary artery disease or disorder · coronary disease · coronary heart disease · disease of coronary artery · disease or disorder of coronary artery · disorder of coronary artery
Data availability: 14 ClinVar variants · 4,081 GWAS associations (210 studies) · 3 GenCC gene-disease records · 41 cell lines.
Disease family
An umbrella term covering 12 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › cardiovascular disorder › vascular disorder › arterial disorder › coronary artery disorder
Related subtypes (29): vertebral artery insufficiency, splenic artery aneurysm, basilar artery insufficiency, arteriosclerosis disorder, subclavian artery aneurysm, pulmonary artery choriocarcinoma, pulmonary artery leiomyosarcoma, hypertensive disorder, carotid artery disorder, pulmonary embolism, peripheral arterial disease, hypotensive disorder, large artery stroke, aortic disorder, cervical artery dissection, anterior spinal artery syndrome, fibromuscular dysplasia, retinal arterial tortuosity, Sneddon syndrome, celiac trunk compression syndrome, pediatric arterial ischemic stroke, absence of the pulmonary artery, arterial occlusion, aberrant subclavian artery, anterior spinal artery stroke, arteritis, pulmonary artery disease, fibromuscular dysplasia, multifocal, carotid web
Subtypes (12): coronary vasospasm, postoperative ventricular dysfunction, coronary aneurysm, coronary stenosis, coronary thrombosis, intermediate coronary syndrome, coronary artery disease, autosomal dominant, 1, coronary artery disease, autosomal dominant 2, coronary artery congenital malformation, coronary atherosclerosis, nonobstructive coronary artery disease, fibromuscular dysplasia of the coronary arteries
Genetics & variants
GWAS landscape
4,081 GWAS associations across 210 studies. Top hits map to 33 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs4977574 | 9e-223 | CDKN2B-AS1 | A | 0.18 |
| rs2891168 | 5e-204 | CDKN2B-AS1 | A | 0.19 |
| rs1333049 | 2e-192 | CDKN2B-AS1 | C | 0.19 |
| rs55730499 | 3e-154 | LPA | T | 0.34 |
| rs247617 | 1e-149 | HERPUD1 - CETP | ? | |
| rs964184 | 2e-108 | ZPR1 | ? | |
| rs186696265 | 5e-92 | LPA - PLG | T | 0.55 |
| rs780094 | 4e-91 | GCKR | ? | |
| rs140570886 | 3e-87 | LPA | T | 0.48 |
| rs9349379 | 3e-77 | PHACTR1 | A | 0.12 |
| rs8082812 | 5e-67 | THEMIS3P - AKR1B1P6 | ? | |
| rs602633 | 2e-59 | CELSR2 - PSRC1 | T | 0.11 |
| rs12740374 | 2e-57 | CELSR2 | T | 0.12 |
| rs629301 | 1e-49 | CELSR2 | ? | |
| rs10455872 | 2e-49 | LPA | G | 1.31 |
| rs10757274 | 8e-45 | CDKN2B-AS1 | G | 1.37 |
| rs765547 | 2e-44 | LPL - RPL30P9 | ? | |
| rs6511720 | 5e-41 | LDLR | T | 0.14 |
| rs7412 | 3e-39 | APOE | T | 0.16 |
| rs55791371 | 2e-36 | SMARCA4 | A | 0.12 |
| rs7173743 | 5e-36 | MORF4L1 | T | 0.06 |
| rs261332 | 2e-35 | ALDH1A2, LIPC-AS1, LIPC | ? | |
| rs671 | 2e-34 | ALDH2 | A | 1.43 |
| rs28451064 | 3e-33 | KCNE2, MRPS6, LINC00310 | A | 0.11 |
| rs6728861 | 1e-32 | WDR12 | A | 0.11 |
| rs4252185 | 2e-32 | PLG | C | 1.34 |
| rs72934535 | 2e-32 | NBEAL1 | T | 0.13 |
| rs115654617 | 2e-32 | NBEAL1 | A | 0.12 |
| rs1728918 | 1e-31 | PPM1G - NRBP1 | ? | |
| rs147555597 | 3e-31 | LPAL2 | A | 0.4 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST007544 | Siewert KM | 2018 | 122,733 | 424,528 | Bivariate Genome-Wide Association Scan Identifies 6 Novel Loci Associated With Lipid Levels and Coronary Artery Disease. |
| GCST007545 | Siewert KM | 2018 | 122,733 | 424,528 | Bivariate Genome-Wide Association Scan Identifies 6 Novel Loci Associated With Lipid Levels and Coronary Artery Disease. |
| GCST005195 | van der Harst P | 2017 | 122,733 | 424,528 | Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease. |
| GCST005196 | van der Harst P | 2017 | 88,192 | 162,544 | Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease. |
| GCST003116 | Nikpay M | 2015 | 42,096 | 99,121 | A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease. |
| GCST004944 | Winsvold BS | 2017 | 37,653 | 171,108 | Shared genetic risk between migraine and coronary artery disease: A genome-wide analysis of common variants. |
| GCST005194 | van der Harst P | 2017 | 34,541 | 261,984 | Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease. |
| GCST002289 | Dichgans M | 2013 | 33,398 | 75,726 | Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants. |
| GCST004717 | Peng C | 2017 | 22,233 | 64,762 | Genetic sharing with coronary artery disease identifies potential novel loci for bone mineral density. |
| GCST000998 | Schunkert H | 2011 | 22,233 | 64,762 | Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 4 |
| Tier 2: splice/UTR | 4 |
| Tier 3: regulatory | 0 |
| Tier 4: intronic/intergenic | 42 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 46 |
| low_freq (0.01-0.05) | 3 |
| rare (<0.01) | 1 |
| unknown | 0 |
Functional consequences
| Consequence | Count |
|---|---|
| intron_variant | 29 |
| intergenic_variant | 11 |
| 3_prime_UTR_variant | 4 |
| missense_variant | 4 |
| non_coding_transcript_exon_variant | 2 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| rs4977574 | 9 | 22098575 | A>G,T | 0.481 | intron_variant | CDKN2B-AS1 | 9e-223 | Tier 4: intronic/intergenic |
| rs2891168 | 9 | 22098620 | A>G | 0.475 | intron_variant | CDKN2B-AS1 | 5e-204 | Tier 4: intronic/intergenic |
| rs1333049 | 9 | 22125504 | G>A,C | 0.485 | intergenic_variant | CDKN2B-AS1 | 2e-192 | Tier 4: intronic/intergenic |
| rs55730499 | 6 | 160584578 | C>T | 0.069 | intron_variant | LPA | 3e-154 | Tier 4: intronic/intergenic |
| rs247617 | 16 | 56956804 | C>A | 0.05 | intergenic_variant | HERPUD1 - CETP | 1e-149 | Tier 4: intronic/intergenic |
| rs964184 | 11 | 116778201 | G>C | 0.05 | 3_prime_UTR_variant | ZPR1 | 2e-108 | Tier 2: splice/UTR |
| rs186696265 | 6 | 160690668 | C>T | 0.013 | intergenic_variant | LPA - PLG | 5e-92 | Tier 4: intronic/intergenic |
| rs780094 | 2 | 27518370 | T>A,C,G | 0.05 | intron_variant | GCKR | 4e-91 | Tier 4: intronic/intergenic |
| rs140570886 | 6 | 160591981 | T>C | 0.017 | intron_variant | LPA | 3e-87 | Tier 4: intronic/intergenic |
| rs9349379 | 6 | 12903725 | A>C,G,T | 0.412 | intron_variant | PHACTR1 | 3e-77 | Tier 4: intronic/intergenic |
| rs8082812 | 18 | 8522684 | C>A | 0.05 | intergenic_variant | THEMIS3P - AKR1B1P6 | 5e-67 | Tier 4: intronic/intergenic |
| rs602633 | 1 | 109278889 | T>A,C,G | 0.235 | intergenic_variant | CELSR2 - PSRC1 | 2e-59 | Tier 4: intronic/intergenic |
| rs12740374 | 1 | 109274968 | G>T | 0.219 | 3_prime_UTR_variant | CELSR2 | 2e-57 | Tier 2: splice/UTR |
| rs629301 | 1 | 109275684 | G>A,C,T | 0.05 | 3_prime_UTR_variant | CELSR2 | 1e-49 | Tier 2: splice/UTR |
| rs10455872 | 6 | 160589086 | A>G | 0.065 | intron_variant | LPA | 2e-49 | Tier 4: intronic/intergenic |
| rs10757274 | 9 | 22096056 | A>C,G,T | 0.46 | intron_variant | CDKN2B-AS1 | 8e-45 | Tier 4: intronic/intergenic |
| rs765547 | 8 | 20008763 | G>A,C,T | 0.05 | intergenic_variant | LPL - RPL30P9 | 2e-44 | Tier 4: intronic/intergenic |
| rs6511720 | 19 | 11091630 | G>T | 0.117 | intron_variant | LDLR | 5e-41 | Tier 4: intronic/intergenic |
| rs7412 | 19 | 44908822 | C>T | 0.08 | missense_variant | APOE | 3e-39 | Tier 1: coding |
| rs55791371 | 19 | 11077477 | A>C,T | 0.113 | intergenic_variant | SMARCA4 | 2e-36 | Tier 4: intronic/intergenic |
| rs7173743 | 15 | 78849442 | T>A,C | 0.446 | intergenic_variant | MORF4L1 | 5e-36 | Tier 4: intronic/intergenic |
| rs261332 | 15 | 58435126 | A>G | 0.05 | non_coding_transcript_exon_variant | ALDH1A2, LIPC-AS1, LIPC | 2e-35 | Tier 4: intronic/intergenic |
| rs671 | 12 | 111803962 | G>A | 0.23 | missense_variant | ALDH2 | 2e-34 | Tier 1: coding |
| rs28451064 | 21 | 34221526 | G>A,T | 0.124 | intron_variant | KCNE2, MRPS6, LINC00310 | 3e-33 | Tier 4: intronic/intergenic |
| rs6728861 | 2 | 203009020 | G>A | 0.117 | intergenic_variant | WDR12 | 1e-32 | Tier 4: intronic/intergenic |
| rs4252185 | 6 | 160702419 | T>C | 0.06 | intron_variant | PLG | 2e-32 | Tier 4: intronic/intergenic |
| rs72934535 | 2 | 203104250 | T>C | 0.1 | intron_variant | NBEAL1 | 2e-32 | Tier 4: intronic/intergenic |
| rs115654617 | 2 | 203029276 | C>A | 0.116 | intron_variant | NBEAL1 | 2e-32 | Tier 4: intronic/intergenic |
| rs1728918 | 2 | 27412596 | A>C,G,T | 0.05 | intron_variant | PPM1G - NRBP1 | 1e-31 | Tier 4: intronic/intergenic |
| rs147555597 | 6 | 160490564 | G>A | 0.009 | intron_variant | LPAL2 | 3e-31 | Tier 4: intronic/intergenic |
ClinVar germline variants
14 retrieved; paginated sample, class counts are floors:
6 benign, 3 uncertain significance, 3 pathogenic, 1 risk factor, 1 likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 633592 | NM_033440.3(CELA2A):c.361G>A (p.Asp121Asn) | CELA2A | Pathogenic | no assertion criteria provided |
| 633594 | NM_033440.3(CELA2A):c.639+1G>C | CELA2A | Pathogenic | no assertion criteria provided |
| 633595 | NM_033440.3(CELA2A):c.209C>T (p.Thr70Met) | CELA2A | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 633593 | NM_033440.3(CELA2A):c.253C>A (p.Leu85Met) | CELA2A | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 441163 | NM_005114.4(HS3ST1):c.-108-6848A>G | HS3ST1 | risk factor | criteria provided, single submitter |
| 684469 | NM_002336.3(LRP6):c.1750C>T (p.His584Tyr) | LRP6 | Uncertain significance | criteria provided, single submitter |
| 374128 | NM_016203.4(PRKAG2):c.590C>G (p.Pro197Arg) | PRKAG2 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 523426 | NM_001256071.3(RNF213):c.11659A>G (p.Lys3887Glu) | RNF213 | Uncertain significance | criteria provided, single submitter |
| 1239762 | NM_000078.3(CETP):c.118+279G>A | CETP | Benign | criteria provided, multiple submitters, no conflicts |
| 17525 | NM_000078.3(CETP):c.1264G>A (p.Val422Ile) | CETP | Benign | criteria provided, multiple submitters, no conflicts |
| 1684531 | NM_198551.4(MIA3):c.3632-105A>G | MIA3 | Benign | criteria provided, single submitter |
| 1684529 | NM_000450.2(SELE):c.38-139T>C | SELE | Benign | criteria provided, single submitter |
| 1684530 | NM_000450.2(SELE):c.1723C>T (p.Leu575Phe) | SELE | Benign | criteria provided, multiple submitters, no conflicts |
| 1272319 | NM_005902.4(SMAD3):c.533-478T>C | SMAD3 | Benign | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 74 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 4
Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)
| Gene | HGNC | Evidence routes |
|---|---|---|
| RNF213 | RNF213 | GWAS, Orphanet |
| CETP | CETP | GWAS, Orphanet |
| MIA3 | MIA3 | GWAS |
| SMAD3 | SMAD3 | GWAS, Orphanet |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| RNF213 | Orphanet:2573 | Moyamoya disease |
| CETP | Orphanet:181428 | Familial Hyperalphalipoproteinemia |
| SMAD3 | Orphanet:284984 | Aneurysm-osteoarthritis syndrome |
| SMAD3 | Orphanet:60030 | Loeys-Dietz syndrome |
| SMAD3 | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| CNNM2 | Orphanet:620363 | Primary hypomagnesemia-generalized seizures-intellectual disability-obesity syndrome |
| BDNF | Orphanet:661 | Congenital central hypoventilation syndrome |
| BDNF | Orphanet:893 | WAGR syndrome |
| CFB | Orphanet:544472 | Atypical hemolytic uremic syndrome with complement gene abnormality |
| ATXN2 | Orphanet:803 | Amyotrophic lateral sclerosis |
| ATXN2 | Orphanet:98756 | Spinocerebellar ataxia type 2 |
| BLM | Orphanet:125 | Bloom syndrome |
| BMP1 | Orphanet:216812 | Osteogenesis imperfecta type 3 |
| BMP1 | Orphanet:314029 | High bone mass osteogenesis imperfecta |
| SEMA5A | Orphanet:281 | Monosomy 5p syndrome |
| BMPR1B | Orphanet:2098 | Acromesomelic dysplasia, Grebe type |
| BMPR1B | Orphanet:2639 | Fibular aplasia-complex brachydactyly syndrome |
| BMPR1B | Orphanet:93384 | Brachydactyly type C |
| BMPR1B | Orphanet:93388 | Brachydactyly type A1 |
| BMPR1B | Orphanet:93396 | Brachydactyly type A2 |
| SFTPC | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| SFTPC | Orphanet:217566 | Chronic respiratory distress with surfactant metabolism deficiency |
| SFTPC | Orphanet:440392 | Interstitial lung disease due to SP-C deficiency |
| SFTPC | Orphanet:685082 | Pediatric acute respiratory distress syndrome |
| SIX5 | Orphanet:107 | BOR syndrome |
| SKI | Orphanet:1606 | 1p36 deletion syndrome |
| SKI | Orphanet:2462 | Shprintzen-Goldberg syndrome |
| SKIC2 | Orphanet:84064 | Trichohepatoenteric syndrome |
| SMARCA4 | Orphanet:1465 | Coffin-Siris syndrome |
| SMARCA4 | Orphanet:231108 | Rhabdoid tumor predisposition syndrome |
| SMARCA4 | Orphanet:370396 | Small cell carcinoma of the ovary |
| SMARCA4 | Orphanet:466962 | SMARCA4-deficient sarcoma of thorax |
| SPINK2 | Orphanet:399805 | Male infertility with azoospermia or oligozoospermia due to single gene mutation |
| BTNL2 | Orphanet:797 | Sarcoidosis |
| TAF6 | Orphanet:694946 | Alazami-Yuan syndrome |
| TBX20 | Orphanet:54260 | Left ventricular noncompaction |
| TBX20 | Orphanet:99103 | Atrial septal defect, ostium secundum type |
| TBXAS1 | Orphanet:1802 | Ghosal hematodiaphyseal dysplasia |
| HNF1A | Orphanet:319303 | Chromophobe renal cell carcinoma |
| HNF1A | Orphanet:324575 | Hyperinsulinism due to HNF1A deficiency |
| HNF1A | Orphanet:404511 | Clear cell papillary renal cell carcinoma |
| HNF1A | Orphanet:552 | MODY |
| TCF7L2 | Orphanet:528084 | Non-specific syndromic intellectual disability |
| TEK | Orphanet:1059 | Blue rubber bleb nevus |
| TEK | Orphanet:2451 | Mucocutaneous venous malformations |
| TEK | Orphanet:714806 | Multifocal sporadic venous malformation |
| TEK | Orphanet:98976 | Congenital glaucoma |
| TGFB1 | Orphanet:1328 | Camurati-Engelmann disease |
| TGFB1 | Orphanet:565788 | Infantile inflammatory bowel disease with neurological involvement |
| TGFB1 | Orphanet:586 | Cystic fibrosis |
Cohort genes → proteins
72 cohort genes, 72 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 67 |
| gwas_and_clinvar | 4 |
| multi_evidence | 1 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| RNF213 | HGNC:14539 | ENSG00000173821 | Q63HN8 | E3 ubiquitin-protein ligase RNF213 | gwas,clinvar |
| CETP | HGNC:1869 | ENSG00000087237 | P11597 | Cholesteryl ester transfer protein | gwas,clinvar |
| MIA3 | HGNC:24008 | ENSG00000154305 | Q5JRA6 | Transport and Golgi organization protein 1 homolog | gwas,clinvar |
| SMAD3 | HGNC:6769 | ENSG00000166949 | P84022 | SMAD family member 3 | gwas,clinvar |
| RNASE1 | HGNC:10044 | ENSG00000129538 | P07998 | Ribonuclease pancreatic | gwas |
| CNNM2 | HGNC:103 | ENSG00000148842 | Q9H8M5 | Metal transporter CNNM2 | gwas |
| BDNF | HGNC:1033 | ENSG00000176697 | P23560 | Neurotrophic factor BDNF precursor form | gwas |
| CFB | HGNC:1037 | ENSG00000243649 | P00751 | Complement factor B | gwas |
| RRBP1 | HGNC:10448 | ENSG00000125844 | Q9P2E9 | Ribosome-binding protein 1 | gwas |
| ATXN2 | HGNC:10555 | ENSG00000204842 | Q99700 | Ataxin-2 | gwas |
| BLM | HGNC:1058 | ENSG00000197299 | P54132 | RecQ-like DNA helicase BLM | gwas |
| BMP1 | HGNC:1067 | ENSG00000168487 | P13497 | Bone morphogenetic protein 1 | gwas |
| CXCL12 | HGNC:10672 | ENSG00000107562 | P48061 | Stromal cell-derived factor 1 | gwas |
| SELE | HGNC:10718 | ENSG00000007908 | P16581 | E-selectin | clinvar |
| SEMA5A | HGNC:10736 | ENSG00000112902 | Q13591 | Semaphorin-5A | gwas |
| SF3A3 | HGNC:10767 | ENSG00000183431 | Q12874 | Splicing factor 3A subunit 3 | gwas |
| BMPR1B | HGNC:1077 | ENSG00000138696 | O00238 | Bone morphogenetic protein receptor type-1B | gwas |
| SCAF11 | HGNC:10784 | ENSG00000139218 | Q99590 | Protein SCAF11 | gwas |
| SFTPC | HGNC:10802 | ENSG00000168484 | P11686 | Surfactant protein C | gwas |
| ST3GAL4 | HGNC:10864 | ENSG00000110080 | Q11206 | CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 | gwas |
| SIPA1 | HGNC:10885 | ENSG00000213445 | Q96FS4 | Signal-induced proliferation-associated protein 1 | gwas |
| SIX5 | HGNC:10891 | ENSG00000177045 | Q8N196 | Homeobox protein SIX5 | gwas |
| SKI | HGNC:10896 | ENSG00000157933 | P12755 | Ski oncogene | gwas |
| SKIC2 | HGNC:10898 | ENSG00000204351 | Q15477 | Superkiller complex protein 2 | gwas |
| SLC18A1 | HGNC:10934 | ENSG00000036565 | P54219 | Chromaffin granule amine transporter | gwas |
| SLC22A3 | HGNC:10967 | ENSG00000146477 | O75751 | Solute carrier family 22 member 3 | gwas |
| SLC22A4 | HGNC:10968 | ENSG00000197208 | Q9H015 | Solute carrier family 22 member 4 | gwas |
| SLC5A3 | HGNC:11038 | ENSG00000198743 | P53794 | Sodium/myo-inositol cotransporter | gwas |
| SMARCA4 | HGNC:11100 | ENSG00000127616 | P51532 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 | gwas |
| SNRPD2 | HGNC:11159 | ENSG00000125743 | P62316 | Small nuclear ribonucleoprotein Sm D2 | gwas |
| BSN | HGNC:1117 | ENSG00000164061 | Q9UPA5 | Protein bassoon | gwas |
| SORT1 | HGNC:11186 | ENSG00000134243 | Q99523 | Sortilin | gwas |
| SPINK2 | HGNC:11245 | ENSG00000128040 | P20155 | Serine protease inhibitor Kazal-type 2 | gwas |
| ZNRD2 | HGNC:11328 | ENSG00000173465 | O60232 | Protein ZNRD2 | gwas |
| BTNL2 | HGNC:1142 | ENSG00000204290 | Q9UIR0 | Butyrophilin-like protein 2 | gwas |
| TAF6 | HGNC:11540 | ENSG00000106290 | P49848 | Transcription initiation factor TFIID subunit 6 | gwas |
| TBX2 | HGNC:11597 | ENSG00000121068 | Q13207 | T-box transcription factor TBX2 | gwas |
| TBX20 | HGNC:11598 | ENSG00000164532 | Q9UMR3 | T-box transcription factor TBX20 | gwas |
| TBXAS1 | HGNC:11609 | ENSG00000059377 | P24557 | Thromboxane-A synthase | gwas |
| HNF1A | HGNC:11621 | ENSG00000135100 | P20823 | Hepatocyte nuclear factor 1-alpha | gwas |
| TCF21 | HGNC:11632 | ENSG00000118526 | O43680 | Transcription factor 21 | gwas |
| TCF7L2 | HGNC:11641 | ENSG00000148737 | Q9NQB0 | Transcription factor 7-like 2 | gwas |
| TCTA | HGNC:11692 | ENSG00000145022 | P57738 | T-cell leukemia translocation-altered gene protein | gwas |
| TDRKH | HGNC:11713 | ENSG00000182134 | Q9Y2W6 | Tudor and KH domain-containing protein | gwas |
| TEK | HGNC:11724 | ENSG00000120156 | Q02763 | Angiopoietin-1 receptor | gwas |
| TGFB1 | HGNC:11766 | ENSG00000105329 | P01137 | Transforming growth factor beta-1 proprotein | gwas |
| TMOD4 | HGNC:11874 | ENSG00000163157 | Q9NZQ9 | Tropomodulin-4 | gwas |
| GIGYF2 | HGNC:11960 | ENSG00000204120 | Q6Y7W6 | GRB10-interacting GYF protein 2 | gwas |
| TNS1 | HGNC:11973 | ENSG00000079308 | Q9HBL0 | Tensin-1 | gwas |
| TNXB | HGNC:11976 | ENSG00000168477 | P22105 | Tenascin-X | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| RNF213 | E3 ubiquitin-protein ligase RNF213 | Atypical E3 ubiquitin ligase that can catalyze ubiquitination of both proteins and lipids, and which is involved in various processes, such as lipid metabolism, angiogenesis and cell-autonomous immunity. |
| CETP | Cholesteryl ester transfer protein | Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. |
| MIA3 | Transport and Golgi organization protein 1 homolog | Plays a role in the transport of cargos that are too large to fit into COPII-coated vesicles and require specific mechanisms to be incorporated into membrane-bound carriers and exported from the endoplasmic reticulum. |
| SMAD3 | SMAD family member 3 | Receptor-regulated SMAD (R-SMAD) that is an intracellular signal transducer and transcriptional modulator activated by TGF-beta (transforming growth factor) and activin type 1 receptor kinases. |
| RNASE1 | Ribonuclease pancreatic | Endonuclease that catalyzes the cleavage of RNA on the 3’ side of pyrimidine nucleotides. |
| CNNM2 | Metal transporter CNNM2 | Divalent metal cation transporter. |
| BDNF | Neurotrophic factor BDNF precursor form | Important signaling molecule that activates signaling cascades downstream of NTRK2. |
| CFB | Complement factor B | Precursor of the catalytic component of the C3 and C5 convertase complexes of the alternative pathway of the complement system, a cascade of proteins that leads to phagocytosis and breakdown of pathogens and signaling that strengthens the… |
| RRBP1 | Ribosome-binding protein 1 | Acts as a ribosome receptor and mediates interaction between the ribosome and the endoplasmic reticulum membrane. |
| ATXN2 | Ataxin-2 | Involved in EGFR trafficking, acting as negative regulator of endocytic EGFR internalization at the plasma membrane. |
| BLM | RecQ-like DNA helicase BLM | ATP-dependent DNA helicase that unwinds double-stranded (ds)DNA in a 3’-5’ direction. |
| BMP1 | Bone morphogenetic protein 1 | Metalloprotease that plays key roles in regulating the formation of the extracellular matrix (ECM) via processing of various precursor proteins into mature functional enzymes or structural proteins. |
| CXCL12 | Stromal cell-derived factor 1 | Chemoattractant active on T-lymphocytes and monocytes but not neutrophils. |
| SELE | E-selectin | Cell-surface glycoprotein having a role in immunoadhesion. |
| SEMA5A | Semaphorin-5A | Bifunctional axonal guidance cue regulated by sulfated proteoglycans; attractive effects result from interactions with heparan sulfate proteoglycans (HSPGs), while the inhibitory effects depend on interactions with chondroitin sulfate prot… |
| SF3A3 | Splicing factor 3A subunit 3 | Component of the 17S U2 SnRNP complex of the spliceosome, a large ribonucleoprotein complex that removes introns from transcribed pre-mRNAs. |
| BMPR1B | Bone morphogenetic protein receptor type-1B | On ligand binding, forms a receptor complex consisting of two type II and two type I transmembrane serine/threonine kinases. |
| SCAF11 | Protein SCAF11 | Plays a role in pre-mRNA alternative splicing by regulating spliceosome assembly. |
| SFTPC | Surfactant protein C | Pulmonary surfactant associated proteins promote alveolar stability by lowering the surface tension at the air-liquid interface in the peripheral air spaces. |
| ST3GAL4 | CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 | A beta-galactoside alpha2-3 sialyltransferase involved in terminal sialylation of glycoproteins and glycolipids. |
| SIPA1 | Signal-induced proliferation-associated protein 1 | GTPase activator for the nuclear Ras-related regulatory proteins Rap1 and Rap2 in vitro, converting them to the putatively inactive GDP-bound state. |
| SIX5 | Homeobox protein SIX5 | Transcription factor that is thought to be involved in regulation of organogenesis. |
| SKI | Ski oncogene | May play a role in terminal differentiation of skeletal muscle cells but not in the determination of cells to the myogenic lineage. |
| SKIC2 | Superkiller complex protein 2 | Helicase component of the SKI complex, a multiprotein complex that assists the RNA-degrading exosome during the mRNA decay and quality-control pathways. |
| SLC18A1 | Chromaffin granule amine transporter | Electrogenic antiporter that exchanges one cationic monoamine with two intravesicular protons across the membrane of secretory and synaptic vesicles. |
| SLC22A3 | Solute carrier family 22 member 3 | Electrogenic voltage-dependent transporter that mediates the transport of a variety of organic cations such as endogenous bioactive amines, cationic drugs and xenobiotics. |
| SLC22A4 | Solute carrier family 22 member 4 | Transporter that mediates the transport of endogenous and microbial zwitterions and organic cations. |
| SLC5A3 | Sodium/myo-inositol cotransporter | Electrogenic Na(+)-coupled sugar symporter that actively transports myo-inositol and its stereoisomer scyllo-inositol across the plasma membrane, with a Na(+) to sugar coupling ratio of 2:1. |
| SMARCA4 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 | ATPase involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). |
| SNRPD2 | Small nuclear ribonucleoprotein Sm D2 | Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. |
| BSN | Protein bassoon | Scaffold protein of the presynaptic cytomatrix at the active zone (CAZ) which is the place in the synapse where neurotransmitter is released. |
| SORT1 | Sortilin | Functions as a sorting receptor in the Golgi compartment and as a clearance receptor on the cell surface. |
| SPINK2 | Serine protease inhibitor Kazal-type 2 | As a strong inhibitor of acrosin, it is required for normal spermiogenesis. |
| ZNRD2 | Protein ZNRD2 | Might play a role in mitosis. |
| BTNL2 | Butyrophilin-like protein 2 | Negative regulator of T-cell proliferation. |
| TAF6 | Transcription initiation factor TFIID subunit 6 | The TFIID basal transcription factor complex plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription. |
| TBX2 | T-box transcription factor TBX2 | Transcription factor which acts as a transcriptional repressor. |
| TBX20 | T-box transcription factor TBX20 | Acts as a transcriptional activator and repressor required for cardiac development and may have key roles in the maintenance of functional and structural phenotypes in adult heart. |
| TBXAS1 | Thromboxane-A synthase | Catalyzes the conversion of prostaglandin H2 (PGH2) to thromboxane A2 (TXA2), a potent inducer of blood vessel constriction and platelet aggregation. |
| HNF1A | Hepatocyte nuclear factor 1-alpha | Transcriptional activator that regulates the tissue specific expression of multiple genes, especially in pancreatic islet cells and in liver. |
| TCF21 | Transcription factor 21 | Involved in epithelial-mesenchymal interactions in kidney and lung morphogenesis that include epithelial differentiation and branching morphogenesis. |
| TCF7L2 | Transcription factor 7-like 2 | Participates in the Wnt signaling pathway and modulates MYC expression by binding to its promoter in a sequence-specific manner. |
| TCTA | T-cell leukemia translocation-altered gene protein | May be required for cellular fusion during osteoclastogenesis. |
| TDRKH | Tudor and KH domain-containing protein | Participates in the primary piRNA biogenesis pathway and is required during spermatogenesis to repress transposable elements and prevent their mobilization, which is essential for the germline integrity. |
| TEK | Angiopoietin-1 receptor | Tyrosine-protein kinase that acts as a cell-surface receptor for ANGPT1, ANGPT2 and ANGPT4 and regulates angiogenesis, endothelial cell survival, proliferation, migration, adhesion and cell spreading, reorganization of the actin cytoskelet… |
| TGFB1 | Transforming growth factor beta-1 proprotein | Transforming growth factor beta-1 proprotein: Precursor of the Latency-associated peptide (LAP) and Transforming growth factor beta-1 (TGF-beta-1) chains, which constitute the regulatory and active subunit of TGF-beta-1, respectively. |
| TMOD4 | Tropomodulin-4 | Blocks the elongation and depolymerization of the actin filaments at the pointed end. |
| GIGYF2 | GRB10-interacting GYF protein 2 | Key component of the 4EHP-GYF2 complex, a multiprotein complex that acts as a repressor of translation initiation. |
| TNS1 | Tensin-1 | May act as a protein phosphatase and/or a lipid phosphatase. |
| TNXB | Tenascin-X | Appears to mediate interactions between cells and the extracellular matrix. |
Protein-family classification
Druggable: 21 · Difficult: 19 · Unknown: 32 · Druggable fraction: 0.29
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Complement | 2 | 7.4× | 0.161 |
| Protease | 5 | 2.5× | 0.161 |
| Transcription factor | 14 | 1.6× | 0.161 |
| Transporter | 3 | 3.2× | 0.164 |
| Antibody/Immunoglobulin | 3 | 1.2× | 0.750 |
| Scaffold/PPI | 5 | 1.2× | 0.750 |
| Phosphatase | 1 | 1.2× | 0.820 |
| Enzyme (other) | 5 | 0.8× | 0.820 |
| Kinase | 2 | 0.8× | 0.820 |
| Other/Unknown | 32 | 0.8× | 0.980 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| RNF213 | Transcription factor | no | Znf_RING, AAA+_ATPase, Znf_RING/FYVE/PHD | |
| CETP | Other/Unknown | no | Lipid-bd_serum_glycop_C, Cholesteryl_ester_transfer, Lipid-bd_serum_glycop_N | |
| MIA3 | Scaffold/PPI | no | SH3_domain, SH3-like_dom_sf, cTAGE_MIA/OTOR | |
| SMAD3 | Other/Unknown | no | SMAD_dom, MAD_homology1_Dwarfin-type, SMAD_FHA_dom_sf | |
| RNASE1 | Enzyme (other) | yes | 4.6.1.18 | RNaseA, RNaseA_AS, RNaseA_domain |
| CNNM2 | Other/Unknown | no | CBS_dom, CNNM, RmlC-like_jellyroll | |
| BDNF | Other/Unknown | no | Nerve_growth_factor-rel, Nerve_growth_factor_CS, Nerve_growth_factor-like | |
| CFB | Protease | yes | 3.4.21.47 | Sushi_SCR_CCP_dom, Trypsin_dom, Peptidase_S1A |
| RRBP1 | Other/Unknown | no | Rib_rcpt_KP, RRBP1 | |
| ATXN2 | Other/Unknown | no | LsmAD_domain, PAM2_motif, LSM_dom_sf | |
| BLM | Enzyme (other) | yes | 3.6.4.12 | Helicase_C-like, HRDC_dom, DNA/RNA_helicase_DEAH_CS |
| BMP1 | Protease | yes | 2.7.11.4 | EGF-type_Asp/Asn_hydroxyl_site, EGF, CUB_dom |
| CXCL12 | Other/Unknown | no | Chemokine_IL8-like_dom, CXC_Chemokine_domain, Interleukin_8-like_sf | |
| SELE | Complement | yes | Sushi_SCR_CCP_dom, EGF, C-type_lectin-like | |
| SEMA5A | Scaffold/PPI | no | TSP1_rpt, Semap_dom, Plexin_repeat | |
| SF3A3 | Transcription factor | no | Matrin/U1-C_Znf_C2H2, SF3a60_bindingd, SF3a60/Prp9_C | |
| BMPR1B | Kinase | yes | 2.7.10.2 | TGFB_receptor, Activin_recp, Prot_kinase_dom |
| SCAF11 | Transcription factor | no | Znf_RING, Znf_RING/FYVE/PHD, Znf_RING_CS | |
| SFTPC | Other/Unknown | no | SP-C, BRICHOS_dom, Surfactant_protein_propep | |
| ST3GAL4 | Enzyme (other) | yes | 2.4.99.2 | Glyco_trans_29, Sialyl_trans, GT29-like_sf |
| SIPA1 | Scaffold/PPI | no | Rap/Ran_GAP_dom, PDZ, Rap/Ran-GAP_sf | |
| SIX5 | Transcription factor | no | HD, Homeodomain-like_sf, Homeobox_CS | |
| SKI | Other/Unknown | no | SKI/SNO/DAC, DNA-bd_dom_put_sf, SAND-like_dom_sf | |
| SKIC2 | Other/Unknown | no | Helicase_C-like, DEAD/DEAH_box_helicase_dom, Ski2/MTR4_C | |
| SLC18A1 | Transporter | yes | Tet-R_TetA/multi-R_MdtG-like, MFS, MFS_dom | |
| SLC22A3 | Transporter | yes | Orgcat_transp/SVOP, Sugar_transporter_CS, MFS | |
| SLC22A4 | Transporter | yes | Orgcat_transp/SVOP, MFS_sugar_transport-like, Sugar_transporter_CS | |
| SLC5A3 | Other/Unknown | no | Na/solute_symporter, Na/solute_symporter_CS, Na/Glc_symporter_sf | |
| SMARCA4 | Other/Unknown | no | SNF2_N, Bromodomain, Helicase_C-like | |
| SNRPD2 | Other/Unknown | no | Sm_dom_euk/arc, LSM_dom_sf, Sm_D2 | |
| BSN | Transcription factor | no | Znf_piccolo, Znf_FYVE_PHD, Znf_RING/FYVE/PHD | |
| SORT1 | Scaffold/PPI | no | VPS10, WD40/YVTN_repeat-like_dom_sf, Sortilin_C | |
| SPINK2 | Other/Unknown | no | Kazal_dom, Kazal_dom_sf, SPINK2 | |
| ZNRD2 | Other/Unknown | no | ZNRD2_N, UPF0148_domain | |
| BTNL2 | Antibody/Immunoglobulin | yes | Ig_C1-set, Ig_sub, Ig-like_dom | |
| TAF6 | Other/Unknown | no | TAF_TATA-bd_Histone-like_dom, Histone-fold, TAF6_C | |
| TBX2 | Transcription factor | no | TF_T-box, TF_Brachyury, p53-like_TF_DNA-bd_sf | |
| TBX20 | Transcription factor | no | TF_T-box, p53-like_TF_DNA-bd_sf, TF_T-box_CS | |
| TBXAS1 | Other/Unknown | no | Cyt_P450, Cyt_P450_E_grp-I, Cyt_P450_CS | |
| HNF1A | Transcription factor | no | HD, HNF1b_C, HNF1a_C | |
| TCF21 | Transcription factor | no | bHLH_dom, HLH_DNA-bd_sf, E-box_TF_Regulators | |
| TCF7L2 | Other/Unknown | no | HMG_box_dom, CTNNB1-bd_N, TCF/LEF | |
| TCTA | Other/Unknown | no | TCTA | |
| TDRKH | Other/Unknown | no | Tudor, KH_dom, KH_dom_type_1 | |
| TEK | Kinase | yes | 2.7.10.1 | Prot_kinase_dom, EGF, Ser-Thr/Tyr_kinase_cat_dom |
| TGFB1 | Other/Unknown | no | TGF-b_propeptide, TGF-b_C, TGFb1 | |
| TMOD4 | Other/Unknown | no | TMOD, LRR_dom_sf | |
| GIGYF2 | Other/Unknown | no | GYF, GYF-like_dom_sf, GRB10-interact_GYF | |
| TNS1 | Phosphatase | yes | SH2, PKC_DAG/PE, Tyr_Pase_cat | |
| TNXB | Antibody/Immunoglobulin | yes | EGF, Fibrinogen_a/b/g_C_dom, FN3_dom |
Expression context
Cohort genes with no expression data: 0.
63 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 72 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| primordial germ cell in gonad | 7 |
| right lung | 6 |
| oocyte | 6 |
| right lobe of liver | 6 |
| liver | 5 |
| calcaneal tendon | 4 |
| hindlimb stylopod muscle | 4 |
| tendon of biceps brachii | 4 |
| right testis | 4 |
| secondary oocyte | 4 |
| buccal mucosa cell | 4 |
| colonic epithelium | 4 |
| ganglionic eminence | 4 |
| granulocyte | 3 |
| pancreatic ductal cell | 3 |
| body of pancreas | 3 |
| right adrenal gland | 3 |
| stromal cell of endometrium | 3 |
| male germ line stem cell (sensu Vertebrata) in testis | 3 |
| sural nerve | 3 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| RNF213 | 252 | ubiquitous | marker | granulocyte, metanephros cortex, pancreatic ductal cell |
| CETP | 165 | broad | marker | lymph node, spleen, liver |
| MIA3 | 282 | ubiquitous | marker | calcaneal tendon, adrenal tissue, body of pancreas |
| SMAD3 | 288 | ubiquitous | marker | tendon of biceps brachii, cartilage tissue, hindlimb stylopod muscle |
| RNASE1 | 283 | broad | marker | left testis, right testis, right lung |
| CNNM2 | 234 | ubiquitous | marker | secondary oocyte, oocyte, right adrenal gland |
| BDNF | 189 | ubiquitous | yes | saphenous vein, pons, oocyte |
| CFB | 134 | broad | marker | right lobe of liver, liver, gall bladder |
| RRBP1 | 298 | ubiquitous | marker | body of pancreas, parotid gland, tendon of biceps brachii |
| ATXN2 | 286 | ubiquitous | marker | buccal mucosa cell, colonic epithelium, olfactory bulb |
| BLM | 199 | ubiquitous | marker | parotid gland, primordial germ cell in gonad, secondary oocyte |
| BMP1 | 236 | ubiquitous | marker | stromal cell of endometrium, left uterine tube, right adrenal gland cortex |
| CXCL12 | 275 | ubiquitous | marker | synovial joint, pericardium, mammary duct |
| SELE | 213 | broad | marker | vena cava, left uterine tube, male germ line stem cell (sensu Vertebrata) in testis |
| SEMA5A | 262 | ubiquitous | marker | metanephric glomerulus, renal glomerulus, stromal cell of endometrium |
| SF3A3 | 289 | ubiquitous | marker | sural nerve, calcaneal tendon, colonic epithelium |
| BMPR1B | 239 | broad | marker | calcaneal tendon, bronchial epithelial cell, cauda epididymis |
| SCAF11 | 295 | ubiquitous | marker | buccal mucosa cell, colonic epithelium, tendon of biceps brachii |
| SFTPC | 208 | tissue_specific | marker | lower lobe of lung, right lung, adult organism |
| ST3GAL4 | 249 | ubiquitous | marker | lower esophagus mucosa, left adrenal gland cortex, left adrenal gland |
| SIPA1 | 191 | ubiquitous | marker | granulocyte, spleen, lower esophagus mucosa |
| SIX5 | 205 | ubiquitous | yes | cardiac muscle of right atrium, right uterine tube, right ovary |
| SKI | 268 | ubiquitous | marker | nipple, right hemisphere of cerebellum, cerebellar hemisphere |
| SKIC2 | 134 | ubiquitous | yes | right lobe of liver, pituitary gland, adenohypophysis |
| SLC18A1 | 79 | tissue_specific | marker | diaphragm, male germ line stem cell (sensu Vertebrata) in testis, buccal mucosa cell |
| SLC22A3 | 189 | broad | marker | thoracic aorta, ascending aorta, descending thoracic aorta |
| SLC22A4 | 201 | ubiquitous | marker | bronchial epithelial cell, epithelium of bronchus, bronchus |
| SLC5A3 | 291 | ubiquitous | marker | renal medulla, choroid plexus epithelium, tibia |
| SMARCA4 | 295 | ubiquitous | marker | ganglionic eminence, cortical plate, cervix squamous epithelium |
| SNRPD2 | 295 | ubiquitous | marker | adult organism, type B pancreatic cell, embryo |
Protein interactions among cohort
Intra-cohort edges: 15.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| SMARCA4 | 8,138 |
| TGFB1 | 7,596 |
| SMAD3 | 6,440 |
| BDNF | 5,587 |
| CXCL12 | 4,892 |
| UMPS | 4,760 |
| SF3A3 | 4,041 |
| WT1 | 3,938 |
| TCF7L2 | 3,775 |
| TWIST1 | 3,507 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ASZ1 | TDRKH | string_interaction |
| BDNF | SORT1 | biogrid_interaction, intact, string_interaction |
| BMP1 | C1S | intact, string_interaction |
| C1S | C2 | intact |
| C2 | SKIC2 | string_interaction |
| C5 | CFB | string_interaction |
| CNNM2 | SFTPC | intact |
| CXCL12 | TEK | string_interaction |
| SF3A3 | SNRPD2 | biogrid_interaction, intact |
| SKI | SMAD3 | biogrid_interaction, intact, string_interaction |
| SMAD3 | TGFB1 | string_interaction |
| SORT1 | VAMP5 | intact |
| TCF21 | WT1 | string_interaction |
| TGFB1 | TNXB | intact |
| VAMP5 | VAMP8 | string_interaction |
Structural data
PDB: 45 · AlphaFold-only: 27 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| SNRPD2 | P62316 | 81 |
| UMPS | P11172 | 72 |
| VEGFA | P15692 | 56 |
| SF3A3 | Q12874 | 46 |
| C5 | P01031 | 42 |
| CXCL12 | P48061 | 34 |
| TAF6 | P49848 | 32 |
| SMARCA4 | P51532 | 31 |
| WT1 | P19544 | 28 |
| CFB | P00751 | 26 |
| TGFB1 | P01137 | 20 |
| SELE | P16581 | 17 |
| SORT1 | Q99523 | 17 |
| TEK | Q02763 | 17 |
| BLM | P54132 | 15 |
| C1S | P09871 | 14 |
| C2 | P06681 | 14 |
| SMAD3 | P84022 | 12 |
| RNASE1 | P07998 | 12 |
| SKIC2 | Q15477 | 11 |
| BMP1 | P13497 | 8 |
| SLC18A1 | P54219 | 8 |
| CNNM2 | Q9H8M5 | 7 |
| HNF1A | P20823 | 6 |
| TDRKH | Q9Y2W6 | 5 |
| ZNF32 | P17041 | 5 |
| RNF213 | Q63HN8 | 4 |
| MIA3 | Q5JRA6 | 4 |
| SEMA5A | Q13591 | 4 |
| SKI | P12755 | 4 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| PGPEP1 | Q9NXJ5 | 93.62 |
| VPS33B | Q9H267 | 91.82 |
| TBXAS1 | P24557 | 91.50 |
| ST3GAL4 | Q11206 | 89.46 |
| TMOD4 | Q9NZQ9 | 86.28 |
| BTNL2 | Q9UIR0 | 85.97 |
| UBE3B | Q7Z3V4 | 85.14 |
| SLC22A4 | Q9H015 | 85.07 |
| WNT9B | O14905 | 84.50 |
| VAMP5 | O95183 | 80.60 |
| ZPR1 | O75312 | 80.11 |
| SLC38A1 | Q9H2H9 | 79.81 |
| UNC5C | O95185 | 78.72 |
| SLC5A3 | P53794 | 78.65 |
| SIPA1 | Q96FS4 | 72.20 |
| RRBP1 | Q9P2E9 | 70.52 |
| ZNF77 | Q15935 | 68.67 |
| TBX20 | Q9UMR3 | 67.87 |
| ASZ1 | Q8WWH4 | 66.83 |
| TCF21 | O43680 | 66.67 |
| TCTA | P57738 | 66.03 |
| FIGN | Q5HY92 | 62.06 |
| TBX2 | Q13207 | 58.13 |
| TNS1 | Q9HBL0 | 53.42 |
| SIX5 | Q8N196 | 53.21 |
| SCAF11 | Q99590 | 42.56 |
| BSN | Q9UPA5 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 739. Enrichment computed across 250 evidence-associated genes (163 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 163 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Defective ABCG8 causes GBD4 and sitosterolemia | 2 | 70.1× | 0.055 | ABCG5, ABCG8 |
| Defective ABCG5 causes sitosterolemia | 2 | 70.1× | 0.055 | ABCG5, ABCG8 |
| Activation of C3 and C5 | 3 | 23.4× | 0.055 | CFB, C2, C5 |
| Nephron development | 3 | 16.2× | 0.109 | WNT9B, WT1, IRX1 |
| Disease | 25 | 2.0× | 0.109 | RNF213, SMAD3, BDNF, RRBP1, BLM, SEMA5A, ST3GAL4, SNRPD2 (+17 more) |
| Loss of Function of TGFBR1 in Cancer | 2 | 28.0× | 0.128 | SMAD3, TGFB1 |
| Loss of Function of SMAD2/3 in Cancer | 2 | 23.4× | 0.128 | SMAD3, TGFB1 |
| Signaling by TGF-beta Receptor Complex in Cancer | 2 | 23.4× | 0.128 | SMAD3, TGFB1 |
| SMAD2/3 Phosphorylation Motif Mutants in Cancer | 2 | 23.4× | 0.128 | SMAD3, TGFB1 |
| TGFBR1 KD Mutants in Cancer | 2 | 23.4× | 0.128 | SMAD3, TGFB1 |
| Anchoring fibril formation | 3 | 14.0× | 0.128 | BMP1, COL4A1, COL4A2 |
| Crosslinking of collagen fibrils | 3 | 10.5× | 0.128 | BMP1, COL4A1, COL4A2 |
| Regulation of MITF-M-dependent genes involved in cell cycle and proliferation | 3 | 10.5× | 0.128 | TBX2, TCF7L2, CDKN2A |
| Transcriptional regulation by RUNX3 | 4 | 6.7× | 0.128 | SMAD3, TCF7L2, TGFB1, CDKN2A |
| Collagen biosynthesis and modifying enzymes | 5 | 5.2× | 0.128 | BMP1, SERPINH1, ADAMTS3, COL4A1, COL4A2 |
| RAC1 GTPase cycle | 9 | 3.4× | 0.128 | MCF2L, VANGL1, SWAP70, ARHGAP26, ARHGAP20, FGD5, DOCK6, PLEKHG1 (+1 more) |
| Signal Transduction | 28 | 1.8× | 0.128 | SMAD3, BDNF, CXCL12, BMPR1B, ST3GAL4, SKI, SMARCA4, TCF7L2 (+20 more) |
| RUNX3 regulates CDKN1A transcription | 2 | 20.0× | 0.167 | SMAD3, TGFB1 |
| Collagen formation | 3 | 8.4× | 0.189 | BMP1, SERPINH1, ADAMTS3 |
| Regulation of Complement cascade | 4 | 5.7× | 0.189 | CFB, C1S, C2, C5 |
| O-linked glycosylation | 5 | 4.4× | 0.189 | SEMA5A, ST3GAL4, B3GNT2, ADAMTSL4, ADAMTS3 |
| Downregulation of TGF-beta receptor signaling | 3 | 7.5× | 0.241 | SMAD3, TGFB1, PMEPA1 |
| CDC42 GTPase cycle | 7 | 3.1× | 0.241 | ARHGEF12, MCF2L, VANGL1, ARHGAP26, ARHGAP20, DOCK6, PLEKHG1 |
| RUNX3 regulates p14-ARF | 2 | 14.0× | 0.250 | TGFB1, CDKN2A |
| Signaling by TGF-beta Receptor Complex | 4 | 4.9× | 0.250 | SMAD3, SKI, TGFB1, CDKN2B |
| Diseases of signal transduction by growth factor receptors and second messengers | 8 | 2.8× | 0.250 | RNF213, SMAD3, BDNF, RRBP1, TCF7L2, TGFB1, SPRED2, KSR2 |
| SARS-CoV-2 modulates autophagy | 2 | 12.7× | 0.261 | VPS33B, VPS11 |
| Regulation of CDH11 gene transcription | 2 | 12.7× | 0.261 | PRDM8, ZEB2 |
| Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer | 3 | 6.8× | 0.261 | SMAD3, SKI, CDKN2B |
| Defective TBXAS1 causes GHDD | 1 | 70.1× | 0.301 | TBXAS1 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 229 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| triglyceride homeostasis | 6 | 12.6× | 0.011 | CETP, ABCG5, ABCG8, ANGPTL4, SCARB1, APOA5 |
| positive regulation of axon extension involved in axon guidance | 3 | 31.5× | 0.024 | CXCL12, SEMA5A, VEGFA |
| regulatory T cell differentiation | 3 | 27.6× | 0.024 | TGFB1, PRDM16, ZBTB46 |
| sprouting angiogenesis | 5 | 10.5× | 0.024 | RNF213, TEK, TGFB1, VEGFA, CDH13 |
| positive regulation of epithelial to mesenchymal transition | 6 | 8.3× | 0.024 | SMAD3, TBX20, TCF7L2, TGFB1, TNXB, TWIST1 |
| collagen fibril organization | 7 | 6.9× | 0.024 | BMP1, TNXB, VPS33B, SERPINH1, ADAMTS3, COL4A1, COL4A2 |
| regulation of small GTPase mediated signal transduction | 9 | 5.7× | 0.024 | SIPA1, ARHGEF12, MCF2L, SWAP70, ARHGAP26, ARHGAP20, FGD5, PLEKHG1 (+1 more) |
| cholesterol homeostasis | 8 | 5.5× | 0.024 | CETP, ABCG5, ABCG8, HDAC9, SCARB1, APOA5, PCSK9, NUS1 |
| negative regulation of DNA-templated transcription | 19 | 2.6× | 0.024 | SIX5, SMARCA4, TBX2, TBX20, TCF7L2, TGFB1, TWIST1, WT1 (+11 more) |
| negative regulation of intestinal phytosterol absorption | 2 | 73.6× | 0.025 | ABCG5, ABCG8 |
| negative regulation of intestinal cholesterol absorption | 2 | 73.6× | 0.025 | ABCG5, ABCG8 |
| triglyceride metabolic process | 5 | 9.7× | 0.025 | CETP, SLC22A4, TNXB, APOA5, PCSK9 |
| lymph vessel morphogenesis | 2 | 49.1× | 0.052 | VEGFA, SVEP1 |
| positive regulation of positive chemotaxis | 3 | 18.4× | 0.052 | SMAD3, VEGFA, CDH13 |
| negative regulation of miRNA transcription | 4 | 10.9× | 0.052 | SMAD3, TGFB1, TWIST1, VEGFA |
| negative regulation of SMAD protein signal transduction | 4 | 10.5× | 0.052 | SKI, TBX20, PMEPA1, FAM89B |
| positive regulation of endothelial cell proliferation | 6 | 6.0× | 0.052 | CXCL12, SEMA5A, TEK, VEGFA, PRKD2, CDH13 |
| glomerulus development | 3 | 17.0× | 0.055 | TCF21, WT1, PLCE1 |
| collagen-activated tyrosine kinase receptor signaling pathway | 3 | 17.0× | 0.055 | TSPAN9, COL4A1, COL4A2 |
| collateral sprouting | 3 | 15.8× | 0.058 | BDNF, ZEB2, RND2 |
| endothelial cell proliferation | 4 | 9.5× | 0.058 | TEK, VEGFA, ZEB2, SCARB1 |
| negative regulation of fat cell differentiation | 5 | 6.8× | 0.058 | SMAD3, SORT1, TGFB1, VEGFA, ZFPM2 |
| heart development | 10 | 3.4× | 0.058 | TEK, TGFB1, WT1, HDAC9, NCOA6, ZFPM2, CALCRL, TAB2 (+2 more) |
| cholesterol efflux | 4 | 9.2× | 0.060 | ABCG5, ABCG8, SCARB1, APOA5 |
| tolerance induction in gut-associated lymphoid tissue | 2 | 36.8× | 0.061 | PRDM16, ZBTB46 |
| negative regulation of skeletal muscle tissue development | 2 | 36.8× | 0.061 | TGFB1, TWIST1 |
| positive regulation of vasculature development | 2 | 36.8× | 0.061 | CXCL12, TGFB1 |
| negative regulation of female gonad development | 2 | 36.8× | 0.061 | WT1, ZFPM2 |
| positive regulation of vascular endothelial growth factor signaling pathway | 3 | 14.7× | 0.061 | TNXB, VEGFA, ADAMTS3 |
| positive regulation of miRNA transcription | 5 | 6.3× | 0.061 | SMAD3, SMARCA4, TGFB1, WT1, MRTFA |
Therapeutics
Drugs indicated for this disease
16 approved, 103 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Alirocumab | Approved (phase 4) |
| Aspirin | Approved (phase 4) |
| Atenolol | Approved (phase 4) |
| Bempedoic Acid | Approved (phase 4) |
| Dipyridamole | Approved (phase 4) |
| Evolocumab | Approved (phase 4) |
| Gemfibrozil | Approved (phase 4) |
| Isosorbide Dinitrate | Approved (phase 4) |
| Isosorbide Mononitrate | Approved (phase 4) |
| Lovastatin | Approved (phase 4) |
| Niacin | Approved (phase 4) |
| Nitroglycerin | Approved (phase 4) |
| Ramipril | Approved (phase 4) |
| Rivaroxaban | Approved (phase 4) |
| Simvastatin | Approved (phase 4) |
| Ticagrelor | Approved (phase 4) |
| Acarbose | Phase 3 (in late-stage trials) |
| Acetylcysteine | Phase 3 (in late-stage trials) |
| Alanine | Phase 3 (in late-stage trials) |
| Alanyl Glutamine | Phase 3 (in late-stage trials) |
| Aliskiren | Phase 3 (in late-stage trials) |
| Alteplase | Phase 3 (in late-stage trials) |
| Amlodipine | Phase 3 (in late-stage trials) |
| Anacetrapib | Phase 3 (in late-stage trials) |
| Anivamersen | Phase 3 (in late-stage trials) |
| Apabetalone | Phase 3 (in late-stage trials) |
| Ascorbic Acid | Phase 3 (in late-stage trials) |
| Atorvastatin | Phase 3 (in late-stage trials) |
| Azithromycin | Phase 3 (in late-stage trials) |
| Benazepril | Phase 3 (in late-stage trials) |
| Bivalirudin | Phase 3 (in late-stage trials) |
| Caffeine | Phase 3 (in late-stage trials) |
| Calcium | Phase 3 (in late-stage trials) |
| Candesartan Cilexetil | Phase 3 (in late-stage trials) |
| Carvedilol | Phase 3 (in late-stage trials) |
| Chlorothiazide | Phase 3 (in late-stage trials) |
| Chlorthalidone | Phase 3 (in late-stage trials) |
| Cholestyramine | Phase 3 (in late-stage trials) |
| Cilostazol | Phase 3 (in late-stage trials) |
| Clofibrate | Phase 3 (in late-stage trials) |
| Clopidogrel | Phase 3 (in late-stage trials) |
| Colchicine | Phase 3 (in late-stage trials) |
| Colestipol Hydrochloride | Phase 3 (in late-stage trials) |
| Dalcetrapib | Phase 3 (in late-stage trials) |
| Dapagliflozin | Phase 3 (in late-stage trials) |
| Dextrose | Phase 3 (in late-stage trials) |
| Diltiazem | Phase 3 (in late-stage trials) |
| Edetic Acid | Phase 3 (in late-stage trials) |
| Edifoligide Sodium | Phase 3 (in late-stage trials) |
| Enalapril | Phase 3 (in late-stage trials) |
| Enoximone | Phase 3 (in late-stage trials) |
| Ergocalciferol | Phase 3 (in late-stage trials) |
| Esmolol | Phase 3 (in late-stage trials) |
| Estradiol | Phase 3 (in late-stage trials) |
| Estrogens, Conjugated | Phase 3 (in late-stage trials) |
| Everolimus | Phase 3 (in late-stage trials) |
| Exenatide | Phase 3 (in late-stage trials) |
| Ezetimibe | Phase 3 (in late-stage trials) |
| Felodipine | Phase 3 (in late-stage trials) |
| Fenofibrate | Phase 3 (in late-stage trials) |
| Ferumoxytol | Phase 3 (in late-stage trials) |
| Fish Oil | Phase 3 (in late-stage trials) |
| Furosemide | Phase 3 (in late-stage trials) |
| Glimepiride | Phase 3 (in late-stage trials) |
| Glutamine | Phase 3 (in late-stage trials) |
| Heparin | Phase 3 (in late-stage trials) |
| Hyaluronidase | Phase 3 (in late-stage trials) |
| Hydralazine | Phase 3 (in late-stage trials) |
| Hydrochlorothiazide | Phase 3 (in late-stage trials) |
| Icosapent | Phase 3 (in late-stage trials) |
| Inclisiran | Phase 3 (in late-stage trials) |
| Insulin Aspart | Phase 3 (in late-stage trials) |
| Insulin Detemir | Phase 3 (in late-stage trials) |
| Insulin Glargine | Phase 3 (in late-stage trials) |
| Insulin Human | Phase 3 (in late-stage trials) |
| Insulin Pork | Phase 3 (in late-stage trials) |
| Insulin Susp Isophane Recombinant Human | Phase 3 (in late-stage trials) |
| Insulin Susp Isophane Semisynthetic Purified Human | Phase 3 (in late-stage trials) |
| Ivabradine | Phase 3 (in late-stage trials) |
| Lisinopril Anhydrous | Phase 3 (in late-stage trials) |
| Lycopene | Phase 3 (in late-stage trials) |
| Mannitol | Phase 3 (in late-stage trials) |
| Medroxyprogesterone Acetate | Phase 3 (in late-stage trials) |
| Metformin | Phase 3 (in late-stage trials) |
| Metoprolol | Phase 3 (in late-stage trials) |
| OMEGA-3 FATTY ACIDS | Phase 3 (in late-stage trials) |
| Oxygen | Phase 3 (in late-stage trials) |
| Pegnivacogin | Phase 3 (in late-stage trials) |
| Pexelizumab | Phase 3 (in late-stage trials) |
| Pioglitazone | Phase 3 (in late-stage trials) |
| Pitavastatin | Phase 3 (in late-stage trials) |
| Potassium Chloride | Phase 3 (in late-stage trials) |
| Prasugrel | Phase 3 (in late-stage trials) |
| Progesterone | Phase 3 (in late-stage trials) |
| Propranolol | Phase 3 (in late-stage trials) |
| Quercetin | Phase 3 (in late-stage trials) |
| Ranolazine | Phase 3 (in late-stage trials) |
| Regadenoson Anhydrous | Phase 3 (in late-stage trials) |
| Repaglinide | Phase 3 (in late-stage trials) |
| Reserpine | Phase 3 (in late-stage trials) |
| Rimonabant | Phase 3 (in late-stage trials) |
| Rosiglitazone | Phase 3 (in late-stage trials) |
| Rosuvastatin | Phase 3 (in late-stage trials) |
| Semaglutide | Phase 3 (in late-stage trials) |
| Sevoflurane | Phase 3 (in late-stage trials) |
| Sodium Chloride | Phase 3 (in late-stage trials) |
| Streptokinase | Phase 3 (in late-stage trials) |
| Tamoxifen | Phase 3 (in late-stage trials) |
| Terazosin | Phase 3 (in late-stage trials) |
| Testosterone | Phase 3 (in late-stage trials) |
| Thiazolidinedione | Phase 3 (in late-stage trials) |
| Tirofiban | Phase 3 (in late-stage trials) |
| Torcetrapib | Phase 3 (in late-stage trials) |
| Tranexamic Acid | Phase 3 (in late-stage trials) |
| Triamterene | Phase 3 (in late-stage trials) |
| Valsartan | Phase 3 (in late-stage trials) |
| Vitamin E | Phase 3 (in late-stage trials) |
| Warfarin | Phase 3 (in late-stage trials) |
| Xenon | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Adenosine, Amiloride, Argatroban, Cangrelor, Dabigatran Etexilate, Dexmedetomidine, Edoxaban, Epoetin Alfa, Eptifibatide, Folic Acid, Fospropofol, Gefarnate, HYDROXYETHYL STARCH 130/0.4, Inclacumab, Levosimendan, Methotrexate, Nicorandil, Nitric Oxide, Otamixaban, Pentoxifylline, Propofol, Riociguat, Selatogrel, Serelaxin, Testosterone Undecanoate, Ubidecarenone, Varespladib Methyl.
Drug target analysis
Approved (phase 4): 11 · Phase ≥3: 15 · Phased (≥1): 19 · Undrugged: 53
Druggability breadth: 96 of 250 evidence-associated genes (38%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| SMAD3 | FLUORESCEIN |
| CFB | IPTACOPAN |
| BLM | AMIFOSTINE |
| CXCL12 | PLERIXAFOR |
| BMPR1B | MOMELOTINIB |
| SLC18A1 | RESERPINE |
| SLC22A3 | PROGESTERONE |
| TBXAS1 | CLOTRIMAZOLE |
| TEK | CETIRIZINE |
| VEGFA | VADADUSTAT |
| C5 | OXAPROZIN |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| BLM | 284 | 4 |
| TBXAS1 | 46 | 4 |
| TEK | 46 | 4 |
| BMPR1B | 28 | 4 |
| SLC22A3 | 20 | 4 |
| CETP | 5 | 3 |
| VEGFA | 5 | 4 |
| C5 | 4 | 4 |
| SMAD3 | 2 | 4 |
| CXCL12 | 2 | 4 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| FLUORESCEIN | 4 | BLM, SMAD3 |
| IPTACOPAN | 4 | CFB |
| AMIFOSTINE | 4 | BLM |
| BEXAROTENE | 4 | BLM |
| DICLOFENAC SODIUM | 4 | BLM |
| CLOTRIMAZOLE | 4 | BLM, TBXAS1 |
| OXCARBAZEPINE | 4 | BLM |
| BUMETANIDE | 4 | BLM |
| GLIPIZIDE | 4 | BLM |
| SALMETEROL XINAFOATE | 4 | BLM |
| AMIODARONE HYDROCHLORIDE | 4 | BLM |
| INDIGOTINDISULFONATE | 4 | BLM |
| TRIHEXYPHENIDYL HYDROCHLORIDE | 4 | BLM |
| RALOXIFENE HYDROCHLORIDE | 4 | BLM |
| IDARUBICIN | 4 | BLM |
| EDROPHONIUM CHLORIDE | 4 | BLM |
| PINACIDIL ANHYDROUS | 4 | BLM |
| DITHIAZANINE | 4 | BLM |
| TRIMETREXATE | 4 | BLM |
| NICARDIPINE HYDROCHLORIDE | 4 | BLM |
| PILOCARPINE HYDROCHLORIDE | 4 | BLM |
| PHENYLEPHRINE HYDROCHLORIDE | 4 | BLM |
| APRACLONIDINE HYDROCHLORIDE | 4 | BLM |
| DOXYLAMINE SUCCINATE | 4 | BLM |
| ROPINIROLE HYDROCHLORIDE | 4 | BLM |
| TETRAHYDROZOLINE HYDROCHLORIDE | 4 | BLM |
| MOLINDONE HYDROCHLORIDE | 4 | BLM |
| PARGYLINE HYDROCHLORIDE | 4 | BLM |
| GUANFACINE HYDROCHLORIDE | 4 | BLM |
| BROMOCRIPTINE MESYLATE | 4 | BLM |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 12.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| TEK | 707 | Binding:701, Functional:4, ADMET:2 |
| SMARCA4 | 230 | Binding:207, ADMET:12, Functional:11 |
| TBXAS1 | 210 | Binding:138, Functional:72 |
| BMPR1B | 166 | Binding:164, ADMET:2 |
| CETP | 132 | Binding:127, Functional:5 |
| SELE | 118 | Binding:108, Functional:10 |
| BLM | 82 | Binding:78, Functional:4 |
| VEGFA | 64 | Binding:64 |
| CFB | 33 | Binding:33 |
| SLC22A3 | 33 | Binding:17, Functional:11, ADMET:5 |
| BMP1 | 30 | Binding:29, ADMET:1 |
| C1S | 30 | Binding:28, Functional:2 |
| CXCL12 | 29 | Binding:29 |
| SLC22A4 | 29 | Functional:26, ADMET:3 |
| C5 | 25 | Binding:25 |
| SMAD3 | 24 | Binding:18, Functional:6 |
| TCF7L2 | 22 | Binding:22 |
| RNASE1 | 17 | Binding:16, ADMET:1 |
| SORT1 | 17 | Binding:15, ADMET:2 |
| UMPS | 14 | Binding:14 |
| TGFB1 | 9 | Binding:9 |
| SF3A3 | 8 | Binding:8 |
| SNRPD2 | 8 | Binding:8 |
| ATXN2 | 5 | Binding:3, Functional:2 |
| GIGYF2 | 5 | Binding:5 |
| C2 | 4 | Binding:4 |
| BDNF | 2 | Binding:2 |
| SLC18A1 | 2 | Functional:1, Binding:1 |
| SLC38A1 | 2 | Binding:2 |
| PGPEP1 | 2 | Binding:2 |
| RNF213 | 1 | Binding:1 |
| MIA3 | 1 | Binding:1 |
| RRBP1 | 1 | Binding:1 |
| ZNRD2 | 1 | Binding:1 |
| TAF6 | 1 | Binding:1 |
| HNF1A | 1 | Binding:1 |
| VAMP8 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| RNASE1 | 4.6.1.18 | pancreatic ribonuclease |
| CFB | 3.4.21.47 | alternative-complement-pathway C3/C5 convertase |
| BLM | 3.6.4.12 | DNA helicase |
| BMP1 | 2.7.11.4, 3.4.24.19, 3.4.24.21 | [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, procollagen C-endopeptidase, astacin |
| BMPR1B | 2.7.10.2 | non-specific protein-tyrosine kinase |
| ST3GAL4 | 2.4.99.2, 2.4.99.6 | beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3-sialyltransferase, N-acetyllactosaminide alpha-2,3-sialyltransferase |
| TEK | 2.7.10.1 | receptor protein-tyrosine kinase |
| C1S | 3.4.21.42 | complement subcomponent C1s |
| UMPS | 4.1.1.23 | orotidine-5’-phosphate decarboxylase |
| C5 | 3.4.21.43 | classical-complement-pathway C3/C5 convertase |
| UBE3B | 2.3.2.26, 2.3.2.B11 | HECT-type E3 ubiquitin transferase, |
| PGPEP1 | 3.4.19.3 | pyroglutamyl-peptidase I |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| CETP | 132 |
| SELE | 118 |
| BMPR1B | 166 |
| SMARCA4 | 230 |
| TBXAS1 | 210 |
| TEK | 707 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 72; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| FLUORESCEIN | 4 | BLM, SMAD3 |
| IPTACOPAN | 4 | CFB |
| AMIFOSTINE | 4 | BLM |
| BEXAROTENE | 4 | BLM |
| DICLOFENAC SODIUM | 4 | BLM |
| CLOTRIMAZOLE | 4 | BLM, TBXAS1 |
| OXCARBAZEPINE | 4 | BLM |
| BUMETANIDE | 4 | BLM |
| GLIPIZIDE | 4 | BLM |
| SALMETEROL XINAFOATE | 4 | BLM |
| AMIODARONE HYDROCHLORIDE | 4 | BLM |
| INDIGOTINDISULFONATE | 4 | BLM |
| TRIHEXYPHENIDYL HYDROCHLORIDE | 4 | BLM |
| RALOXIFENE HYDROCHLORIDE | 4 | BLM |
| IDARUBICIN | 4 | BLM |
| EDROPHONIUM CHLORIDE | 4 | BLM |
| PINACIDIL ANHYDROUS | 4 | BLM |
| DITHIAZANINE | 4 | BLM |
| TRIMETREXATE | 4 | BLM |
| NICARDIPINE HYDROCHLORIDE | 4 | BLM |
| PILOCARPINE HYDROCHLORIDE | 4 | BLM |
| PHENYLEPHRINE HYDROCHLORIDE | 4 | BLM |
| APRACLONIDINE HYDROCHLORIDE | 4 | BLM |
| DOXYLAMINE SUCCINATE | 4 | BLM |
| ROPINIROLE HYDROCHLORIDE | 4 | BLM |
| TETRAHYDROZOLINE HYDROCHLORIDE | 4 | BLM |
| MOLINDONE HYDROCHLORIDE | 4 | BLM |
| PARGYLINE HYDROCHLORIDE | 4 | BLM |
| GUANFACINE HYDROCHLORIDE | 4 | BLM |
| BROMOCRIPTINE MESYLATE | 4 | BLM |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 11 | SMAD3, CFB, BLM, CXCL12, BMPR1B, SLC18A1, SLC22A3, TBXAS1, TEK, VEGFA (+1 more) |
| B | Phased (≥1) drug, not yet approved | 8 | CETP, SELE, SMARCA4, SNRPD2, SORT1, TGFB1, C1S, UMPS |
| C | Druggable family + PDB, no drug | 4 | RNASE1, BMP1, TNXB, C2 |
| D | Druggable family + AlphaFold only, no drug | 7 | ST3GAL4, SLC22A4, BTNL2, TNS1, UNC5C, UBE3B, PGPEP1 |
| E | Difficult family or no structure, no drug | 42 | RNF213, MIA3, CNNM2, BDNF, RRBP1, ATXN2, SEMA5A, SF3A3, SCAF11, SFTPC (+32 more) |
Undrugged target profiles
53 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| BDNF | 2 | SORT1 |
| RNF213 | 1 | — |
| MIA3 | 1 | — |
| RNASE1 | 17 | — |
| CNNM2 | 0 | — |
| RRBP1 | 1 | — |
| ATXN2 | 5 | — |
| BMP1 | 30 | — |
| SEMA5A | 0 | — |
| SF3A3 | 8 | — |
| SCAF11 | 0 | — |
| SFTPC | 0 | — |
| ST3GAL4 | 0 | — |
| SIPA1 | 0 | — |
| SIX5 | 0 | — |
| SKI | 0 | — |
| SKIC2 | 0 | — |
| SLC22A4 | 29 | — |
| SLC5A3 | 0 | — |
| BSN | 0 | — |
| SPINK2 | 0 | — |
| ZNRD2 | 1 | — |
| BTNL2 | 0 | — |
| TAF6 | 1 | — |
| TBX2 | 0 | — |
| TBX20 | 0 | — |
| HNF1A | 1 | — |
| TCF21 | 0 | — |
| TCF7L2 | 22 | — |
| TCTA | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 5,111.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| PHASE4 | 686 |
| PHASE3 | 344 |
| PHASE2/PHASE3 | 52 |
| PHASE2 | 18 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT01475123 | PHASE4 | ACTIVE_NOT_RECRUITING | Prospective Study of End Stage Renal Disease Patients With Coronary Artery Disease Treated by Oral Nicorandil |
| NCT03169985 | PHASE4 | ACTIVE_NOT_RECRUITING | Randomized Controlled Trial of Moderate-Intensity Rosuvastatin With Ezetimibe Combination Therapy Versus High-Intensity Rosuvastatin on Progression of Coronary Atherosclerotic Plaque |
| NCT03378934 | PHASE4 | RECRUITING | Anti-platelet Effect of Berberine in Patients After Percutaneous Coronary Intervention |
| NCT03417388 | PHASE4 | ACTIVE_NOT_RECRUITING | Women’s IschemiA TRial to Reduce Events In Non-ObstRuctive CAD |
| NCT03462498 | PHASE4 | ACTIVE_NOT_RECRUITING | ShorT and OPtimal Duration of Dual AntiPlatelet Therapy-2 Study for the Patients With ACS |
| NCT03947229 | PHASE4 | ACTIVE_NOT_RECRUITING | A Randomized Comparison of CLOpidogrel Monotherapy Versus Extended Dual-antiplatelet Therapy Beyond 12 Months After Implantation of Drug-eluting StEnts in High-risk Lesions or Patients; A-CLOSE Trial |
| NCT04014803 | PHASE4 | RECRUITING | Aspirin and a PoTent P2Y12 Inhibitor Versus Aspirin and Clopidogrel in Patients Undergoing PCI for Complex Lesion |
| NCT04416581 | PHASE4 | RECRUITING | Potassium-Competitive Acid Blocker Versus pROton-Pump Inhibitor for GastroproTECTion Strategies In Patients at High Gastro-Intestinal Bleeding Risk Receiving Antithrombotic Therapy |
| NCT04436978 | PHASE4 | RECRUITING | What is the Optimal Antithrombotic Strategy in Patients With Atrial Fibrillation Undergoing PCI? |
| NCT04654052 | PHASE4 | ACTIVE_NOT_RECRUITING | VerifyNow to Optimise Platelet Inhibition in Coronary Acute Syndrome |
| NCT05030818 | PHASE4 | RECRUITING | Cross-over Study of Coronary Risk Factors With a Polypill |
| NCT05081999 | PHASE4 | ACTIVE_NOT_RECRUITING | De-Adoption of Beta-Blockers in Patients With Stable Ischemic Heart Disease |
| NCT05347069 | PHASE4 | RECRUITING | Efficacy and Safety of Aspirin in Patients With Chronic Coronary Syndromes Without Revascularization |
| NCT05418556 | PHASE4 | RECRUITING | Tailored Versus Coventional AntiPlaTelet Strategy Intended After OPTIMIZEd Drug Eluting Stent |
| NCT05427786 | PHASE4 | RECRUITING | A Study to Evaluate the Impact of Pre-procedural Intracoronary Nicorandil Injection to PREVENT ReductioN of DecREased TIMI FLOW in Patients Who Undergoing Percutaneous Coronary Intervention for the Coronary Artery Disease |
| NCT05437900 | PHASE4 | RECRUITING | INSIGHTFUL-FFR Clinical Trial |
| NCT05618353 | PHASE4 | RECRUITING | The Peri-OPerative COlchicine to Reduce Negative Events (POPCORN) Trial |
| NCT05631769 | PHASE4 | ACTIVE_NOT_RECRUITING | HOST - DAPT Duration According the Bleeding Risk |
| NCT05638867 | PHASE4 | RECRUITING | NOAC Therapy Guided by PARIS Risk Score and D-dimer in Patients With ACS After PCI |
| NCT05681702 | PHASE4 | RECRUITING | Tailoring Bleeding Reduction Approaches in Patients Undergoing PCI |
| NCT05845489 | PHASE4 | RECRUITING | Harmonizing Optimal Strategy for Treatment of Coronary Artery Stenosis- CloPidogREl for Primary preVENTION (HOST-PREVENTION) |
| NCT05850091 | PHASE4 | RECRUITING | Polygenic Risk-based Detection of Subclinical Coronary Atherosclerosis and Intervention With Statin and Colchicine |
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Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| CLOPIDOGREL | 4 | 140 |
| PRASUGREL | 4 | 34 |
| ROSUVASTATIN | 4 | 34 |
| ASPIRIN | 4 | 29 |
| ATORVASTATIN | 4 | 23 |
| REGADENOSON ANHYDROUS | 4 | 20 |
| EZETIMIBE | 4 | 19 |
| SODIUM CHLORIDE | 4 | 15 |
| SIMVASTATIN | 4 | 12 |
| TRIMETAZIDINE | 4 | 12 |
| HEPARIN | 4 | 11 |
| NIACIN | 4 | 11 |
| RANOLAZINE | 4 | 11 |
| BIVALIRUDIN | 4 | 10 |
| PITAVASTATIN | 4 | 10 |
| CILOSTAZOL | 4 | 7 |
| IODIXANOL | 4 | 7 |
| TIROFIBAN | 4 | 7 |
| PRAVASTATIN | 4 | 5 |
| TELMISARTAN | 4 | 5 |
| ABCIXIMAB | 4 | 4 |
| ACARBOSE | 4 | 4 |
| DIPYRIDAMOLE | 4 | 4 |
| PROPOFOL | 4 | 4 |
| RAMIPRIL | 4 | 4 |
| AMLODIPINE | 4 | 3 |
| ENOXAPARIN SODIUM | 4 | 3 |
| ETOMIDATE | 4 | 3 |
| METFORMIN | 4 | 3 |
| PACLITAXEL | 4 | 3 |
Related Atlas pages
- Cohort genes: RNF213, CETP, MIA3, SMAD3, RNASE1, CNNM2, BDNF, CFB, RRBP1, ATXN2, BLM, BMP1, CXCL12, SELE, SEMA5A, SF3A3, BMPR1B, SCAF11, SFTPC, ST3GAL4, SIPA1, SIX5, SKI, SKIC2, SLC18A1, SLC22A3, SLC22A4, SLC5A3, SMARCA4, SNRPD2, BSN, SORT1, SPINK2, ZNRD2, BTNL2, TAF6, TBX2, TBX20, TBXAS1, HNF1A, TCF21, TCF7L2, TCTA, TDRKH, TEK, TGFB1, TMOD4, GIGYF2, TNS1, TNXB, TUB, TWIST1, C1S, C2, UMPS, UNC5C, VAMP5, VAMP8, VEGFA, VPS33B, WNT9B, WT1, ZPR1, ZNF32, ZNF77, FIGN, C5, SLC38A1, UBE3B, ASZ1, TLNRD1, PGPEP1
- Drugs: Clopidogrel, Prasugrel, Rosuvastatin, Aspirin, Atorvastatin, Regadenoson, Ezetimibe, Sodium Chloride, Simvastatin, Trimetazidine, Heparin, Niacin, Ranolazine, Bivalirudin, Pitavastatin, Cilostazol, Iodixanol, Tirofiban, Pravastatin, Telmisartan, Abciximab, Acarbose, Dipyridamole, Propofol, Ramipril, Amlodipine, Enoxaparin, Etomidate, Metformin, Paclitaxel
- Associated genes: ANGPTL8, KALRN, RECQL5