Creatine transporter deficiency
diseaseOn this page
Also known as CCDS1cerebral creatine deficiency syndrome 1cerebral creatine deficiency syndrome 1, X-linked recessivecerebral creatine deficiency syndrome type 1creatine deficiency, X-linkedintellectual disability, X-linked with seizures, short stature and midface hypoplasiaintellectual disability, X-linked, with creatine transport deficiencymental retardation, X-linked with seizures, short stature and midface hypoplasiamental retardation, X-linked, with creatine Transport deficiencymental retardation, X-linked, with seizures, short stature, and midface hypoplasiaSLC6A8 deficiencyX-linked creatine deficiencyX-linked creatine deficiency syndrome
Summary
Creatine transporter deficiency (MONDO:0010305) is a disease caused by SLC6A8 (GenCC Definitive), with 4 cohort genes and 6 clinical trials.
At a glance
- Prevalence: Unknown (Worldwide) [Orphanet-validated]
- Causal gene: SLC6A8 (GenCC Definitive)
- Cohort genes: 4
- ClinVar variants: 1,069
- Phenotypes (HPO): 26
- Clinical trials: 6
Clinical features
Epidemiology
Prevalence records
1 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Cases/families | 150 | Worldwide | Validated |
Signs & symptoms
Clinical features (HPO)
26 HPO clinical features (Orphanet curated; top 26 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0000750 | Delayed speech and language development | Very frequent (80-99%) |
| HP:0001249 | Intellectual disability | Very frequent (80-99%) |
| HP:0001250 | Seizure | Very frequent (80-99%) |
| HP:0001263 | Global developmental delay | Very frequent (80-99%) |
| HP:0012113 | Abnormality of creatine metabolism | Very frequent (80-99%) |
| HP:0000194 | Open mouth | Frequent (30-79%) |
| HP:0000272 | Malar flattening | Frequent (30-79%) |
| HP:0000729 | Autistic behavior | Frequent (30-79%) |
| HP:0000742 | Self-mutilation | Frequent (30-79%) |
| HP:0001251 | Ataxia | Frequent (30-79%) |
| HP:0001252 | Hypotonia | Frequent (30-79%) |
| HP:0001276 | Hypertonia | Frequent (30-79%) |
| HP:0001332 | Dystonia | Frequent (30-79%) |
| HP:0002019 | Constipation | Frequent (30-79%) |
| HP:0002072 | Chorea | Frequent (30-79%) |
| HP:0000752 | Hyperactivity | Frequent (30-79%) |
| HP:0002251 | Aganglionic megacolon | Frequent (30-79%) |
| HP:0002305 | Athetosis | Frequent (30-79%) |
| HP:0002595 | Ileus | Frequent (30-79%) |
| HP:0004322 | Short stature | Frequent (30-79%) |
| HP:0004326 | Cachexia | Frequent (30-79%) |
| HP:0000252 | Microcephaly | Occasional (5-29%) |
| HP:0000298 | Mask-like facies | Occasional (5-29%) |
| HP:0000508 | Ptosis | Occasional (5-29%) |
| HP:0001582 | Redundant skin | Occasional (5-29%) |
| HP:0001382 | Joint hypermobility | Occasional (5-29%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | creatine transporter deficiency |
| Mondo ID | MONDO:0010305 |
| MeSH | C535598 |
| OMIM | 300352 |
| Orphanet | 52503 |
| DOID | DOID:0050800 |
| NCIT | C125665 |
| SNOMED CT | 698290008 |
| UMLS | C1845862 |
| MedGen | 337451 |
| GARD | 0001608 |
| NORD | 1966 |
| Is cancer (heuristic) | no |
Also known as: CCDS1 · cerebral creatine deficiency syndrome 1 · cerebral creatine deficiency syndrome 1, X-linked recessive · cerebral creatine deficiency syndrome type 1 · creatine deficiency, X-linked · creatine transporter deficiency · intellectual disability, X-linked with seizures, short stature and midface hypoplasia · intellectual disability, X-linked, with creatine transport deficiency · mental retardation, X-linked with seizures, short stature and midface hypoplasia · mental retardation, X-linked, with creatine Transport deficiency · mental retardation, X-linked, with creatine transport deficiency · mental retardation, X-linked, with seizures, short stature, and midface hypoplasia · SLC6A8 deficiency · X-linked creatine deficiency · X-linked creatine deficiency syndrome
Data availability: 1,069 ClinVar variants · 174 ClinGen variant curations · 5 GenCC gene-disease records · 32 cell lines.
Disease family
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › inborn errors of metabolism › inborn disorder of amino acid and other organic acid metabolism › inborn disorder of amino acid metabolism › cerebral creatine deficiency syndrome › creatine transporter deficiency
Related subtypes (2): AGAT deficiency, guanidinoacetate methyltransferase deficiency
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
600 retrieved; paginated sample, class counts are floors:
336 likely benign, 124 uncertain significance, 53 pathogenic, 37 benign, 25 likely pathogenic, 14 benign/likely benign, 9 conflicting classifications of pathogenicity, 2 pathogenic/likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 2422157 | NC_000023.10:g.(?152014869)(155171615_?)del | ABCD1 | Pathogenic | criteria provided, single submitter |
| 1064525 | NM_005629.4(SLC6A8):c.1394_1399del (p.Gly465_Met467delinsVal) | SLC6A8 | Pathogenic | no assertion criteria provided |
| 1069434 | NM_005629.4(SLC6A8):c.1108C>T (p.Gln370Ter) | SLC6A8 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1070967 | NM_005629.4(SLC6A8):c.1551del (p.Trp518fs) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1076955 | NM_005629.4(SLC6A8):c.1393-12_1395del | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 11696 | NM_005629.4(SLC6A8):c.1540C>T (p.Arg514Ter) | SLC6A8 | Pathogenic | reviewed by expert panel |
| 11697 | NM_005629.4(SLC6A8):c.1141G>C (p.Gly381Arg) | SLC6A8 | Pathogenic | reviewed by expert panel |
| 11698 | NM_005629.4(SLC6A8):c.1216TTC[2] (p.Phe408del) | SLC6A8 | Pathogenic | reviewed by expert panel |
| 11699 | NM_005629.4(SLC6A8):c.950dup (p.Tyr317Ter) | SLC6A8 | Pathogenic | reviewed by expert panel |
| 11701 | NM_005629.4(SLC6A8):c.263-2A>G | SLC6A8 | Pathogenic | reviewed by expert panel |
| 11702 | NM_005629.4(SLC6A8):c.1011C>G (p.Cys337Trp) | SLC6A8 | Pathogenic | no assertion criteria provided |
| 1174596 | NM_005629.4(SLC6A8):c.1016+2_1016+5del | SLC6A8 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1308664 | NM_005629.4(SLC6A8):c.1330G>T (p.Glu444Ter) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1361089 | NM_005629.4(SLC6A8):c.1169C>T (p.Pro390Leu) | SLC6A8 | Pathogenic | reviewed by expert panel |
| 1376685 | NM_005629.4(SLC6A8):c.1283del (p.Gly428fs) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1390569 | NM_005629.4(SLC6A8):c.453_454insGCTGAGGCGGGAGAATCTCTTGAAGCCGGGAAGCAGAGGTTGCAGTGAACCGACATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAAATAAATAAAAATAAAATAAAATAAAACAAGGTCTCATTCTCTTACCCAGGCTGGAGTGCAGTGGTACAATCAGAGCTCACCCCAGCCACAAACTCCTGGACTCAAGTGATCCTCCCACCTCAGCCTCCCTTGAATAGCTAGGACTACAAGTGTATGCCTCCAGGCCTGGCTAATTGTTTTTAATTTTTTGGTAGAGGCAGGGATCTCATTGTATTGCCCAGGCTGGGGTCCCAAACTCCTGATCACAAGTGAACCTCCTGCCTCAGCCTCTGAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCAGCTCCCTGACAATTTCTGGCTGCATGGACTTCTGGTTACAAGCAGGGAAACTGAGGCCTGGATACAGCAAACAGGATCTGGCCCAGCTTTAAGTGGGGAACATGCAGTTTGGGGGACCCAGGCTCATGGTG (p.Leu152delinsAlaGluAlaGlyGluSerLeuGluAlaGlyLysGlnArgLeuGlnTer) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1395238 | NM_005629.4(SLC6A8):c.1496-1_1510del | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1397100 | NM_005629.4(SLC6A8):c.444_445del (p.Ile149fs) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1412467 | NM_005629.4(SLC6A8):c.1055G>A (p.Ser352Asn) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1416517 | NM_005629.4(SLC6A8):c.1037_1038del (p.Leu346fs) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1417554 | NM_005629.4(SLC6A8):c.1210del (p.Ala404fs) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1429550 | NM_005629.4(SLC6A8):c.844del (p.Leu282fs) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1679707 | NM_005629.4(SLC6A8):c.627del (p.Val210fs) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1686215 | NM_005629.4(SLC6A8):c.980dup (p.Ser329fs) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1687062 | NM_005629.4(SLC6A8):c.1292_1302del (p.Asp431fs) | SLC6A8 | Pathogenic | criteria provided, single submitter |
| 1703957 | NM_005629.4(SLC6A8):c.1519_1543del (p.Ile507fs) | SLC6A8 | Pathogenic | reviewed by expert panel |
| 1705030 | NM_005629.4(SLC6A8):c.1548C>A (p.Cys516Ter) | SLC6A8 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1706458 | NM_005629.4(SLC6A8):c.1340_1341del (p.Val447fs) | SLC6A8 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1802549 | NM_005629.4(SLC6A8):c.1428C>G (p.Tyr476Ter) | SLC6A8 | Pathogenic | reviewed by expert panel |
| 1804054 | NM_005629.4(SLC6A8):c.149dup (p.Pro51fs) | SLC6A8 | Pathogenic | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 5 · Orphanet: 8 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| SLC6A8 | Definitive | X-linked | creatine transporter deficiency | 5 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| SLC6A8 | Orphanet:52503 | X-linked creatine transporter deficiency |
| BCAP31 | Orphanet:369939 | Severe motor and intellectual disabilities-sensorineural deafness-dystonia syndrome |
| BCAP31 | Orphanet:369942 | CADDS |
| ABCD1 | Orphanet:139396 | X-linked cerebral adrenoleukodystrophy |
| ABCD1 | Orphanet:139399 | Adrenomyeloneuropathy |
| ABCD1 | Orphanet:369942 | CADDS |
| ABCD1 | Orphanet:388 | Hirschsprung disease |
| ATP2B3 | Orphanet:314978 | X-linked non progressive cerebellar ataxia |
Cohort genes → proteins
4 cohort genes, 4 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 4 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| SLC6A8 | HGNC:11055 | ENSG00000130821 | P48029 | Sodium- and chloride-dependent creatine transporter 1 | gencc,clinvar |
| BCAP31 | HGNC:16695 | ENSG00000185825 | P51572 | B-cell receptor-associated protein 31 | clinvar |
| ABCD1 | HGNC:61 | ENSG00000101986 | P33897 | ATP-binding cassette sub-family D member 1 | clinvar |
| ATP2B3 | HGNC:816 | ENSG00000067842 | Q16720 | Plasma membrane calcium-transporting ATPase 3 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| SLC6A8 | Sodium- and chloride-dependent creatine transporter 1 | Creatine:sodium symporter which mediates the uptake of creatine. |
| BCAP31 | B-cell receptor-associated protein 31 | Functions as a chaperone protein. |
| ABCD1 | ATP-binding cassette sub-family D member 1 | ATP-dependent transporter of the ATP-binding cassette (ABC) family involved in the transport of very long chain fatty acid (VLCFA)-CoA from the cytosol to the peroxisome lumen. |
| ATP2B3 | Plasma membrane calcium-transporting ATPase 3 | ATP-driven Ca(2+) ion pump involved in the maintenance of basal intracellular Ca(2+) levels at the presynaptic terminals. |
Protein-family classification
Druggable: 1 · Difficult: 1 · Unknown: 2 · Druggable fraction: 0.25
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Transporter | 1 | 19.4× | 0.151 |
| Transcription factor | 1 | 2.1× | 0.605 |
| Other/Unknown | 2 | 0.9× | 0.769 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| SLC6A8 | Other/Unknown | no | Na/ntran_symport, Na/ntran_symport_creatine, SNS_sf | |
| BCAP31 | Other/Unknown | no | BAP29/BAP31, BAP29/BAP31_N, Bap31/Bap29_C | |
| ABCD1 | Transporter | yes | 7.6.2.4 | ABC_transporter-like_ATP-bd, AAA+_ATPase, FA_transporter |
| ATP2B3 | Transcription factor | no | 7.2.2.10 | P_typ_ATPase, ATPase_P-typ_cation-transptr_N, ATPase_P-typ_cation-transptr_C |
Expression context
Cohort genes with no expression data: 0.
3 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 4 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| ileal mucosa | 2 |
| left adrenal gland | 2 |
| apex of heart | 1 |
| inferior olivary complex | 1 |
| right adrenal gland | 1 |
| right adrenal gland cortex | 1 |
| left adrenal gland cortex | 1 |
| Brodmann (1909) area 23 | 1 |
| endothelial cell | 1 |
| middle temporal gyrus | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| SLC6A8 | 291 | ubiquitous | marker | inferior olivary complex, apex of heart, ileal mucosa |
| BCAP31 | 292 | ubiquitous | marker | left adrenal gland, right adrenal gland, right adrenal gland cortex |
| ABCD1 | 201 | ubiquitous | marker | ileal mucosa, left adrenal gland cortex, left adrenal gland |
| ATP2B3 | 145 | tissue_specific | yes | endothelial cell, Brodmann (1909) area 23, middle temporal gyrus |
Protein interactions among cohort
Intra-cohort edges: 1.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| ATP2B3 | 3,203 |
| BCAP31 | 3,085 |
| SLC6A8 | 1,508 |
| ABCD1 | 1,181 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ABCD1 | BCAP31 | string_interaction |
Structural data
PDB: 3 · AlphaFold-only: 1 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| ABCD1 | P33897 | 14 |
| SLC6A8 | P48029 | 6 |
| BCAP31 | P51572 | 3 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| ATP2B3 | Q16720 | 74.57 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 45. Enrichment computed across 4 evidence-associated genes (4 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Defective ABCD1 causes ALD | 1 | 1427.5× | 0.027 | ABCD1 |
| alpha-linolenic (omega3) and linoleic (omega6) acid metabolism | 1 | 475.8× | 0.027 | ABCD1 |
| Linoleic acid (LA) metabolism | 1 | 285.5× | 0.027 | ABCD1 |
| Creatine metabolism | 1 | 259.6× | 0.027 | SLC6A8 |
| Reduction of cytosolic Ca++ levels | 1 | 237.9× | 0.027 | ATP2B3 |
| Beta-oxidation of very long chain fatty acids | 1 | 219.6× | 0.027 | ABCD1 |
| alpha-linolenic acid (ALA) metabolism | 1 | 178.4× | 0.027 | ABCD1 |
| Platelet calcium homeostasis | 1 | 178.4× | 0.027 | ATP2B3 |
| Peroxisomal lipid metabolism | 1 | 167.9× | 0.027 | ABCD1 |
| ABC transporters in lipid homeostasis | 1 | 150.3× | 0.027 | ABCD1 |
| Class I peroxisomal membrane protein import | 1 | 129.8× | 0.027 | ABCD1 |
| Apoptotic cleavage of cellular proteins | 1 | 119.0× | 0.027 | BCAP31 |
| Apoptotic execution phase | 1 | 119.0× | 0.027 | BCAP31 |
| ABC transporter disorders | 1 | 109.8× | 0.027 | ABCD1 |
| Transport of small molecules | 2 | 12.6× | 0.027 | ABCD1, ATP2B3 |
| Antigen Presentation: Folding, assembly and peptide loading of class I MHC | 1 | 98.5× | 0.028 | BCAP31 |
| Platelet homeostasis | 1 | 69.6× | 0.038 | ATP2B3 |
| Ion transport by P-type ATPases | 1 | 51.9× | 0.045 | ATP2B3 |
| Ion homeostasis | 1 | 51.0× | 0.045 | ATP2B3 |
| Respiratory Syncytial Virus Infection Pathway | 1 | 49.2× | 0.045 | BCAP31 |
| Protein localization | 1 | 47.6× | 0.045 | ABCD1 |
| Apoptosis | 1 | 42.0× | 0.048 | BCAP31 |
| RSV-host interactions | 1 | 39.1× | 0.050 | BCAP31 |
| Programmed Cell Death | 1 | 36.6× | 0.051 | BCAP31 |
| Disorders of transmembrane transporters | 1 | 34.8× | 0.051 | ABCD1 |
| Fatty acid metabolism | 1 | 32.8× | 0.052 | ABCD1 |
| ABC-family protein mediated transport | 1 | 30.4× | 0.052 | ABCD1 |
| Disease | 2 | 6.5× | 0.052 | BCAP31, ABCD1 |
| Cardiac conduction | 1 | 27.2× | 0.056 | ATP2B3 |
| Metabolism | 2 | 5.8× | 0.059 | SLC6A8, ABCD1 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| peroxisomal membrane transport | 1 | 2106.5× | 0.005 | ABCD1 |
| very long-chain fatty-acyl-CoA catabolic process | 1 | 2106.5× | 0.005 | ABCD1 |
| positive regulation of retrograde protein transport, ER to cytosol | 1 | 1404.3× | 0.005 | BCAP31 |
| positive regulation of unsaturated fatty acid biosynthetic process | 1 | 1404.3× | 0.005 | ABCD1 |
| creatine metabolic process | 1 | 1053.2× | 0.005 | SLC6A8 |
| creatine transmembrane transport | 1 | 1053.2× | 0.005 | SLC6A8 |
| sterol homeostasis | 1 | 1053.2× | 0.005 | ABCD1 |
| long-chain fatty acid import into peroxisome | 1 | 842.6× | 0.005 | ABCD1 |
| regulation of fatty acid beta-oxidation | 1 | 702.2× | 0.005 | ABCD1 |
| long-chain fatty acid catabolic process | 1 | 702.2× | 0.005 | ABCD1 |
| myelin maintenance | 1 | 702.2× | 0.005 | ABCD1 |
| regulation of mitochondrial depolarization | 1 | 702.2× | 0.005 | ABCD1 |
| calcium ion export across plasma membrane | 1 | 702.2× | 0.005 | ATP2B3 |
| fatty acid elongation | 1 | 601.9× | 0.005 | ABCD1 |
| very long-chain fatty acid catabolic process | 1 | 601.9× | 0.005 | ABCD1 |
| protein localization to endoplasmic reticulum exit site | 1 | 526.6× | 0.006 | BCAP31 |
| positive regulation of fatty acid beta-oxidation | 1 | 383.0× | 0.007 | ABCD1 |
| fatty acid derivative biosynthetic process | 1 | 383.0× | 0.007 | ABCD1 |
| regulation of cellular response to oxidative stress | 1 | 324.1× | 0.008 | ABCD1 |
| regulation of oxidative phosphorylation | 1 | 300.9× | 0.008 | ABCD1 |
| neuron projection maintenance | 1 | 280.9× | 0.008 | ABCD1 |
| negative regulation of reactive oxygen species biosynthetic process | 1 | 247.8× | 0.008 | ABCD1 |
| fatty acid homeostasis | 1 | 234.1× | 0.008 | ABCD1 |
| alpha-linolenic acid metabolic process | 1 | 221.7× | 0.008 | ABCD1 |
| positive regulation of ERAD pathway | 1 | 221.7× | 0.008 | BCAP31 |
| regulation of cardiac conduction | 1 | 210.7× | 0.009 | ATP2B3 |
| peroxisome organization | 1 | 200.6× | 0.009 | ABCD1 |
| very long-chain fatty acid metabolic process | 1 | 191.5× | 0.009 | ABCD1 |
| linoleic acid metabolic process | 1 | 175.5× | 0.009 | ABCD1 |
| unsaturated fatty acid biosynthetic process | 1 | 162.0× | 0.010 | ABCD1 |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 1 · Phased (≥1): 1 · Undrugged: 3
Druggability breadth: 2 of 4 evidence-associated genes (50%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| SLC6A8 | 1 | 3 |
| BCAP31 | 0 | 0 |
| ABCD1 | 0 | 0 |
| ATP2B3 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| CREATINE | 3 | SLC6A8 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 2.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| BCAP31 | 8 | Binding:8 |
| SLC6A8 | 1 | Functional:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| ABCD1 | 7.6.2.4 | ABC-type fatty-acyl-CoA transporter |
| ATP2B3 | 7.2.2.10 | P-type Ca2+ transporter |
Pharmacogenomics
Cohort genes with a PharmGKB record: 4; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
1 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| CREATINE | 3 | SLC6A8 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 1 | SLC6A8 |
| C | Druggable family + PDB, no drug | 1 | ABCD1 |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 2 | BCAP31, ATP2B3 |
Undrugged target profiles
3 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| BCAP31 | 8 | — |
| ABCD1 | 0 | — |
| ATP2B3 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 6.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 6 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT06139172 | Not specified | RECRUITING | Web Intervention for Parents of Youth With Genetic Syndromes (WINGS) |
| NCT06868979 | Not specified | RECRUITING | Optical Imaging in X-linked Disorders. |
| NCT02931682 | Not specified | TERMINATED | Observational Study of Males With Creatine Transporter Deficiency |
| NCT05642221 | Not specified | COMPLETED | Functional Near-Infrared Spectroscopy (fNIRS) Combined With Diffuse Correlation Spectroscopy (DCS) in Neurocognitive Disease as Compared to Healthy Neurotypical Controls |
| NCT06292884 | Not specified | UNKNOWN | Optical Imaging as a Tool for Monitoring Brain Function in Creatine Deficiency Syndromes |