Cutis laxa
diseaseOn this page
Also known as elastolysisgeneralised elastolysisgeneralized elastolysis
Summary
Cutis laxa (MONDO:0016175) is a disease with 12 cohort genes and 6 clinical trials. The dominant Reactome pathway is Molecules associated with elastic fibres (4 cohort genes).
At a glance
- Prevalence: 1-9 / 1 000 000 (Europe) [Orphanet-validated]
- Cohort genes: 12
- ClinVar variants: 124
- Clinical trials: 6
Clinical features
Epidemiology
Prevalence records
1 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Prevalence at birth | 1-9 / 1 000 000 | 0.1 | Europe | Validated |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | cutis laxa |
| Mondo ID | MONDO:0016175 |
| MeSH | D003483 |
| Orphanet | 209 |
| DOID | DOID:3144 |
| ICD-11 | 1227401566 |
| NCIT | C84663 |
| SNOMED CT | 58588007 |
| UMLS | C0010495 |
| MedGen | 8206 |
| GARD | 0006227 |
| MedDRA | 10011692 |
| NORD | 1022 |
| Is cancer (heuristic) | no |
Also known as: cutis laxa · elastolysis · generalised elastolysis · generalized elastolysis
Data availability: 124 ClinVar variants · 1 GenCC gene-disease record · 9 cell lines.
Disease family
An umbrella term covering 2 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › integumentary system disorder › cutis laxa
Related subtypes (35): Neu-Laxova syndrome, cutaneous mycosis, integumentary system benign neoplasm, integumentary system cancer, nipple neoplasm, nail disorder, disorder of pilosebaceous unit, Bartholin duct cyst, benign mammary dysplasia, skin disorder, breast fibrosis, breast mucosa-associated lymphoid tissue lymphoma, panniculitis, alopecia-epilepsy-pyorrhea-intellectual disability syndrome, autosomal dominant deafness - onychodystrophy syndrome, keratoderma hereditarium mutilans, Rombo syndrome, Sjogren-Larsson syndrome, mucosulfatidosis, ichthyosis prematurity syndrome, ANE syndrome, frontonasal dysplasia with alopecia and genital anomaly, peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndrome, mandibulofacial dysostosis with alopecia, X-linked ichthyosis syndrome, demodicidosis, Proteus-like syndrome, familial atypical multiple mole melanoma syndrome, familial tumoral calcinosis, subcutaneous tissue disorder, Bartholin gland neoplasm, pseudoxanthoma elasticum (inherited or acquired), skin appendage disorder, keratinization disease, paraneoplastic cutaneous syndrome
Subtypes (2): acquired cutis laxa, inherited cutis laxa
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
124 retrieved; paginated sample, class counts are floors:
48 uncertain significance, 27 conflicting classifications of pathogenicity, 16 benign, 11 pathogenic/likely pathogenic, 10 benign/likely benign, 6 likely pathogenic, 5 pathogenic, 1 likely benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 845 | NM_012463.4(ATP6V0A2):c.187C>T (p.Arg63Ter) | ATP6V0A2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 417760 | NM_001696.4(ATP6V1E1):c.634C>T (p.Arg212Trp) | ATP6V1E1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1048805 | NM_001039348.3(EFEMP1):c.1201C>T (p.Arg401Ter) | EFEMP1 | Pathogenic | criteria provided, single submitter |
| 286400 | NM_012463.4(ATP6V0A2):c.78dup (p.Ser27fs) | LOC130009117 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 13190 | NM_006907.4(PYCR1):c.797G>A (p.Arg266Gln) | PYCR1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 13196 | NM_006907.4(PYCR1):c.355C>G (p.Arg119Gly) | PYCR1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 13197 | NM_006907.4(PYCR1):c.356G>A (p.Arg119His) | PYCR1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 13198 | NM_006907.4(PYCR1):c.752G>A (p.Arg251His) | PYCR1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1704556 | NM_006907.4(PYCR1):c.575del (p.Gly192fs) | PYCR1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1878382 | NM_006907.4(PYCR1):c.151A>T (p.Lys51Ter) | PYCR1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3069061 | NM_006907.4(PYCR1):c.148del (p.Gly49_Val50insTer) | PYCR1 | Pathogenic | criteria provided, single submitter |
| 325904 | NM_006907.4(PYCR1):c.633+1G>C | PYCR1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 449091 | NM_006907.4(PYCR1):c.535G>A (p.Ala179Thr) | PYCR1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 488456 | NM_006907.4(PYCR1):c.355C>T (p.Arg119Cys) | PYCR1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 521586 | NM_006907.4(PYCR1):c.138+1G>A | PYCR1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 68789 | NM_006907.4(PYCR1):c.616G>A (p.Gly206Arg) | PYCR1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2429237 | NM_012463.4(ATP6V0A2):c.2393del (p.Ala798fs) | ATP6V0A2 | Likely pathogenic | criteria provided, single submitter |
| 374067 | NM_000093.5(COL5A1):c.2903del (p.Pro968fs) | COL5A1 | Likely pathogenic | criteria provided, single submitter |
| 3075819 | NM_016938.5(EFEMP2):c.1009C>T (p.Arg337Ter) | EFEMP2 | Likely pathogenic | criteria provided, single submitter |
| 183343 | NM_198841.4(FAM120AOS):c.743C>T (p.Thr248Ile) | FAM120AOS | Likely pathogenic | no assertion criteria provided |
| 995862 | NM_002317.7(LOX):c.1021A>C (p.Thr341Pro) | LOX | Likely pathogenic | criteria provided, single submitter |
| 1804749 | NM_001042545.2(LTBP4):c.1426+1G>T | LTBP4 | Likely pathogenic | criteria provided, single submitter |
| 6559 | NM_001171.6(ABCC6):c.3421C>T (p.Arg1141Ter) | ABCC6 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 21453 | NM_006329.4(FBLN5):c.604G>A (p.Gly202Arg) | FBLN5 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 218359 | NM_006329.4(FBLN5):c.268G>A (p.Gly90Ser) | FBLN5 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 218360 | NM_006329.4(FBLN5):c.376G>A (p.Val126Met) | FBLN5 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 287193 | NM_006329.4(FBLN5):c.621T>C (p.Asp207=) | FBLN5 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 314861 | NM_006329.4(FBLN5):c.*648G>A | FBLN5 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 314871 | NM_006329.4(FBLN5):c.1191G>A (p.Thr397=) | FBLN5 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 314874 | NM_006329.4(FBLN5):c.989+9C>T | FBLN5 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 13 · Orphanet: 21 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| EFEMP1 | Strong | Autosomal recessive | autosomal recessive cutis laxa type 1 | 13 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| EFEMP1 | Orphanet:75376 | Familial drusen |
| EFEMP1 | Orphanet:98977 | Juvenile glaucoma |
| ATP6V0A2 | Orphanet:2834 | Wrinkly skin syndrome |
| ATP6V0A2 | Orphanet:357074 | Autosomal recessive cutis laxa type 2, classic type |
| SLC39A13 | Orphanet:157965 | SLC39A13-related spondylodysplastic Ehlers-Danlos syndrome |
| COL5A1 | Orphanet:287 | Classical Ehlers-Danlos syndrome |
| EFEMP2 | Orphanet:314718 | Lethal arteriopathy syndrome due to fibulin-4 deficiency |
| EFEMP2 | Orphanet:90349 | Autosomal recessive cutis laxa type 1 |
| EFEMP2 | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| FBLN5 | Orphanet:280598 | Hereditary sensorimotor neuropathy with hyperelastic skin |
| FBLN5 | Orphanet:90348 | Autosomal dominant cutis laxa |
| FBLN5 | Orphanet:90349 | Autosomal recessive cutis laxa type 1 |
| ABCC6 | Orphanet:51608 | Generalized arterial calcification of infancy |
| ABCC6 | Orphanet:758 | Pseudoxanthoma elasticum |
| LOX | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| LTBP4 | Orphanet:221145 | Cutis laxa with severe pulmonary, gastrointestinal and urinary anomalies |
| LTBP4 | Orphanet:98896 | Duchenne muscular dystrophy |
| ATP6V1E1 | Orphanet:357074 | Autosomal recessive cutis laxa type 2, classic type |
| PYCR1 | Orphanet:2078 | Geroderma osteodysplastica |
| PYCR1 | Orphanet:293633 | PYCR1-related De Barsy syndrome |
| PYCR1 | Orphanet:357064 | Autosomal recessive cutis laxa type 2B |
Cohort genes → proteins
12 cohort genes, 12 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 12 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| EFEMP1 | HGNC:3218 | ENSG00000115380 | Q12805 | EGF-containing fibulin-like extracellular matrix protein 1 | gencc,clinvar |
| ATP6V0A2 | HGNC:18481 | ENSG00000185344 | Q9Y487 | V-type proton ATPase 116 kDa subunit a 2 | clinvar |
| SLC39A13 | HGNC:20859 | ENSG00000165915 | Q96H72 | Zinc transporter ZIP13 | clinvar |
| COL5A1 | HGNC:2209 | ENSG00000130635 | P20908 | Collagen alpha-1(V) chain | clinvar |
| FAM120AOS | HGNC:23389 | ENSG00000188938 | Q5T036 | Uncharacterized protein FAM120AOS | clinvar |
| EFEMP2 | HGNC:3219 | ENSG00000172638 | O95967 | EGF-containing fibulin-like extracellular matrix protein 2 | clinvar |
| FBLN5 | HGNC:3602 | ENSG00000140092 | Q9UBX5 | Fibulin-5 | clinvar |
| ABCC6 | HGNC:57 | ENSG00000091262 | O95255 | ATP-binding cassette sub-family C member 6 | clinvar |
| LOX | HGNC:6664 | ENSG00000113083 | P28300 | Protein-lysine 6-oxidase | clinvar |
| LTBP4 | HGNC:6717 | ENSG00000090006 | Q8N2S1 | Latent-transforming growth factor beta-binding protein 4 | clinvar |
| ATP6V1E1 | HGNC:857 | ENSG00000131100 | P36543 | V-type proton ATPase subunit E 1 | clinvar |
| PYCR1 | HGNC:9721 | ENSG00000183010 | P32322 | Pyrroline-5-carboxylate reductase 1, mitochondrial | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| EFEMP1 | EGF-containing fibulin-like extracellular matrix protein 1 | Binds EGFR, the EGF receptor, inducing EGFR autophosphorylation and the activation of downstream signaling pathways. |
| ATP6V0A2 | V-type proton ATPase 116 kDa subunit a 2 | Subunit of the V0 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons. |
| SLC39A13 | Zinc transporter ZIP13 | Functions as a zinc transporter transporting Zn(2+) from the Golgi apparatus to the cytosol and thus influences the zinc level at least in areas of the cytosol. |
| COL5A1 | Collagen alpha-1(V) chain | Type V collagen is a member of group I collagen (fibrillar forming collagen). |
| EFEMP2 | EGF-containing fibulin-like extracellular matrix protein 2 | Plays a crucial role in elastic fiber formation in tissue, and in the formation of ultrastructural connections between elastic laminae and smooth muscle cells in the aorta, therefore participates in terminal differentiation and maturation… |
| FBLN5 | Fibulin-5 | Essential for elastic fiber formation, is involved in the assembly of continuous elastin (ELN) polymer and promotes the interaction of microfibrils and ELN. |
| ABCC6 | ATP-binding cassette sub-family C member 6 | ATP-dependent transporter of the ATP-binding cassette (ABC) family that actively extrudes physiological compounds, and xenobiotics from cells. |
| LOX | Protein-lysine 6-oxidase | Responsible for the post-translational oxidative deamination of peptidyl lysine residues in precursors to fibrous collagen and elastin. |
| LTBP4 | Latent-transforming growth factor beta-binding protein 4 | Key regulator of transforming growth factor beta (TGFB1, TGFB2 and TGFB3) that controls TGF-beta activation by maintaining it in a latent state during storage in extracellular space. |
| ATP6V1E1 | V-type proton ATPase subunit E 1 | Subunit of the V1 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons. |
| PYCR1 | Pyrroline-5-carboxylate reductase 1, mitochondrial | Oxidoreductase that catalyzes the last step in proline biosynthesis, which corresponds to the reduction of pyrroline-5-carboxylate to L-proline using NAD(P)H. |
Protein-family classification
Druggable: 4 · Difficult: 0 · Unknown: 8 · Druggable fraction: 0.33
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Transporter | 1 | 6.5× | 0.216 |
| Enzyme (other) | 3 | 3.0× | 0.216 |
| Other/Unknown | 8 | 1.2× | 0.325 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| EFEMP1 | Other/Unknown | no | EGF-type_Asp/Asn_hydroxyl_site, EGF, EGF-like_Ca-bd_dom | |
| ATP6V0A2 | Enzyme (other) | yes | 7.1.2.1 | V-ATPase_116kDa_su, V-type_ATPase_116kDa_su_euka |
| SLC39A13 | Other/Unknown | no | ZIP | |
| COL5A1 | Other/Unknown | no | Fib_collagen_C, Laminin_G, Collagen | |
| FAM120AOS | Other/Unknown | no | ||
| EFEMP2 | Other/Unknown | no | EGF-type_Asp/Asn_hydroxyl_site, EGF, EGF-like_Ca-bd_dom | |
| FBLN5 | Other/Unknown | no | EGF-type_Asp/Asn_hydroxyl_site, EGF, EGF-like_Ca-bd_dom | |
| ABCC6 | Transporter | yes | 7.6.2.3 | ABC_transporter-like_ATP-bd, AAA+_ATPase, MRP |
| LOX | Enzyme (other) | yes | 1.4.3.13 | Lysyl_oxidase, Lysyl_oxidase_CS, |
| LTBP4 | Other/Unknown | no | EGF-type_Asp/Asn_hydroxyl_site, EGF, EGF-like_Ca-bd_dom | |
| ATP6V1E1 | Other/Unknown | no | ATPase_V1_Esu, ATPase_E_C | |
| PYCR1 | Enzyme (other) | yes | 1.5.1.2 | Pyrroline-COOH_reductase, 6-PGluconate_DH-like_C_sf, P5C_Rdtase_cat_N |
Expression context
Cohort genes with no expression data: 0.
12 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 12 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| stromal cell of endometrium | 5 |
| thoracic aorta | 3 |
| ascending aorta | 3 |
| descending thoracic aorta | 2 |
| right coronary artery | 2 |
| tendon of biceps brachii | 2 |
| skin of leg | 1 |
| sural nerve | 1 |
| metanephros cortex | 1 |
| periodontal ligament | 1 |
| adenohypophysis | 1 |
| cardiac muscle of right atrium | 1 |
| ileal mucosa | 1 |
| duodenum | 1 |
| liver | 1 |
| right lobe of liver | 1 |
| calcaneal tendon | 1 |
| tibia | 1 |
| nerve | 1 |
| tibial nerve | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| EFEMP1 | 286 | ubiquitous | marker | right coronary artery, thoracic aorta, descending thoracic aorta |
| ATP6V0A2 | 239 | ubiquitous | marker | skin of leg, sural nerve, stromal cell of endometrium |
| SLC39A13 | 248 | ubiquitous | marker | metanephros cortex, ascending aorta, thoracic aorta |
| COL5A1 | 248 | ubiquitous | marker | stromal cell of endometrium, periodontal ligament, tendon of biceps brachii |
| FAM120AOS | 256 | ubiquitous | marker | cardiac muscle of right atrium, adenohypophysis, ileal mucosa |
| EFEMP2 | 289 | ubiquitous | marker | stromal cell of endometrium, tendon of biceps brachii, ascending aorta |
| FBLN5 | 261 | ubiquitous | marker | thoracic aorta, ascending aorta, descending thoracic aorta |
| ABCC6 | 136 | marker | right lobe of liver, liver, duodenum | |
| LOX | 242 | ubiquitous | marker | stromal cell of endometrium, calcaneal tendon, tibia |
| LTBP4 | 264 | ubiquitous | marker | nerve, tibial nerve, right coronary artery |
| ATP6V1E1 | 303 | ubiquitous | marker | middle temporal gyrus, prefrontal cortex, pons |
| PYCR1 | 224 | ubiquitous | marker | stromal cell of endometrium, body of pancreas, parotid gland |
Protein interactions among cohort
Intra-cohort edges: 11.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| LOX | 5,479 |
| EFEMP1 | 2,988 |
| COL5A1 | 2,600 |
| FBLN5 | 2,301 |
| PYCR1 | 2,239 |
| EFEMP2 | 2,219 |
| ATP6V1E1 | 2,187 |
| ATP6V0A2 | 2,076 |
| LTBP4 | 1,984 |
| SLC39A13 | 1,093 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ATP6V0A2 | ATP6V1E1 | intact, string_interaction |
| ATP6V0A2 | EFEMP2 | string_interaction |
| ATP6V0A2 | FBLN5 | string_interaction |
| ATP6V0A2 | PYCR1 | string_interaction |
| EFEMP2 | FBLN5 | intact |
| EFEMP2 | LOX | intact, string_interaction |
| EFEMP2 | LTBP4 | string_interaction |
| EFEMP2 | PYCR1 | string_interaction |
| FBLN5 | LOX | intact, string_interaction |
| FBLN5 | LTBP4 | string_interaction |
| FBLN5 | PYCR1 | string_interaction |
Structural data
PDB: 5 · AlphaFold-only: 7 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| PYCR1 | P32322 | 47 |
| ATP6V1E1 | P36543 | 8 |
| ABCC6 | O95255 | 4 |
| COL5A1 | P20908 | 1 |
| EFEMP2 | O95967 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| FBLN5 | Q9UBX5 | 83.69 |
| ATP6V0A2 | Q9Y487 | 81.94 |
| EFEMP1 | Q12805 | 77.67 |
| SLC39A13 | Q96H72 | 76.33 |
| LOX | P28300 | 68.06 |
| LTBP4 | Q8N2S1 | 62.53 |
| FAM120AOS | Q5T036 | 55.38 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 36. Enrichment computed across 12 evidence-associated genes (10 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 10 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Molecules associated with elastic fibres | 4 | 123.5× | 7e-07 | EFEMP1, EFEMP2, FBLN5, LTBP4 |
| Elastic fibre formation | 3 | 100.8× | 5e-05 | FBLN5, LOX, LTBP4 |
| Insulin receptor recycling | 2 | 76.1× | 0.003 | ATP6V0A2, ATP6V1E1 |
| Transferrin endocytosis and recycling | 2 | 73.7× | 0.003 | ATP6V0A2, ATP6V1E1 |
| ROS and RNS production in phagocytes | 2 | 67.2× | 0.003 | ATP6V0A2, ATP6V1E1 |
| Defective ABCC6 causes PXE | 1 | 1142.0× | 0.005 | ABCC6 |
| Assembly of collagen fibrils and other multimeric structures | 2 | 40.1× | 0.006 | COL5A1, LOX |
| Ion channel transport | 2 | 19.2× | 0.021 | ATP6V0A2, ATP6V1E1 |
| Extracellular matrix organization | 2 | 12.6× | 0.041 | LOX, LTBP4 |
| Glutamate and glutamine metabolism | 1 | 81.6× | 0.044 | PYCR1 |
| Regulation of MITF-M-dependent genes involved in lysosome biogenesis and autophagy | 1 | 67.2× | 0.048 | ATP6V1E1 |
| Fibronectin matrix formation | 1 | 57.1× | 0.048 | COL5A1 |
| Crosslinking of collagen fibrils | 1 | 57.1× | 0.048 | LOX |
| Attachment of bacteria to epithelial cells | 1 | 49.6× | 0.050 | COL5A1 |
| Collagen formation | 1 | 45.7× | 0.050 | LOX |
| ABC transporter disorders | 1 | 43.9× | 0.050 | ABCC6 |
| Syndecan interactions | 1 | 42.3× | 0.050 | COL5A1 |
| MET activates PTK2 signaling | 1 | 38.1× | 0.052 | COL5A1 |
| TGF-beta receptor signaling activates SMADs | 1 | 32.6× | 0.057 | LTBP4 |
| Collagen chain trimerization | 1 | 25.9× | 0.065 | COL5A1 |
| Signaling by PDGF | 1 | 25.4× | 0.065 | COL5A1 |
| NCAM1 interactions | 1 | 24.8× | 0.065 | COL5A1 |
| Developmental Lineage of Pancreatic Ductal Cells | 1 | 22.8× | 0.067 | COL5A1 |
| Signaling by TGF-beta Receptor Complex | 1 | 20.0× | 0.070 | LTBP4 |
| Amino acids regulate mTORC1 | 1 | 20.0× | 0.070 | ATP6V1E1 |
| Collagen degradation | 1 | 17.6× | 0.076 | COL5A1 |
| Collagen biosynthesis and modifying enzymes | 1 | 17.0× | 0.076 | COL5A1 |
| Non-integrin membrane-ECM interactions | 1 | 15.4× | 0.080 | COL5A1 |
| ECM proteoglycans | 1 | 15.0× | 0.080 | COL5A1 |
| Disorders of transmembrane transporters | 1 | 13.9× | 0.083 | ABCC6 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 11 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| elastic fiber assembly | 4 | 557.1× | 3e-09 | EFEMP2, FBLN5, LOX, LTBP4 |
| connective tissue development | 2 | 766.0× | 1e-04 | SLC39A13, LOX |
| regulation of transforming growth factor beta receptor signaling pathway | 2 | 145.9× | 0.003 | LOX, LTBP4 |
| ascending aorta development | 1 | 1532.0× | 0.006 | LOX |
| descending aorta development | 1 | 1532.0× | 0.006 | LOX |
| integrin biosynthetic process | 1 | 1532.0× | 0.006 | COL5A1 |
| intramembranous bone growth | 1 | 1532.0× | 0.006 | FBLN5 |
| positive regulation of smooth muscle cell-matrix adhesion | 1 | 1532.0× | 0.006 | EFEMP2 |
| regulation of platelet-derived growth factor receptor-beta signaling pathway | 1 | 1532.0× | 0.006 | LOX |
| proton transmembrane transport | 2 | 56.7× | 0.006 | ATP6V0A2, ATP6V1E1 |
| regulation of macroautophagy | 2 | 53.8× | 0.006 | ATP6V0A2, ATP6V1E1 |
| inorganic diphosphate transport | 1 | 766.0× | 0.008 | ABCC6 |
| negative regulation of endodermal cell differentiation | 1 | 766.0× | 0.008 | COL5A1 |
| positive regulation of aortic smooth muscle cell differentiation | 1 | 766.0× | 0.008 | EFEMP2 |
| collagen fibril organization | 2 | 40.9× | 0.008 | COL5A1, LOX |
| peptidyl-lysine oxidation | 1 | 510.7× | 0.011 | LOX |
| post-embryonic eye morphogenesis | 1 | 510.7× | 0.011 | EFEMP1 |
| regulation of collagen fibril organization | 1 | 510.7× | 0.011 | EFEMP2 |
| tendon development | 1 | 383.0× | 0.011 | COL5A1 |
| hormone secretion | 1 | 383.0× | 0.011 | LTBP4 |
| eye morphogenesis | 1 | 383.0× | 0.011 | COL5A1 |
| aorta smooth muscle tissue morphogenesis | 1 | 383.0× | 0.011 | EFEMP2 |
| inhibition of non-skeletal tissue mineralization | 1 | 383.0× | 0.011 | ABCC6 |
| positive regulation of collagen fibril organization | 1 | 383.0× | 0.011 | EFEMP2 |
| platelet-derived growth factor receptor-beta signaling pathway | 1 | 306.4× | 0.012 | LOX |
| regulation of bone development | 1 | 306.4× | 0.012 | LOX |
| regulation of striated muscle tissue development | 1 | 255.3× | 0.013 | LOX |
| L-proline biosynthetic process | 1 | 255.3× | 0.013 | PYCR1 |
| regulation of removal of superoxide radicals | 1 | 255.3× | 0.013 | FBLN5 |
| leukotriene transport | 1 | 218.9× | 0.015 | ABCC6 |
Therapeutics
Drug target analysis
Approved (phase 4): 2 · Phase ≥3: 2 · Phased (≥1): 2 · Undrugged: 10
Druggability breadth: 5 of 12 evidence-associated genes (42%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| LOX | PYRITHIONE |
| PYCR1 | PARGYLINE |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| LOX | 4 | 4 |
| PYCR1 | 1 | 4 |
| EFEMP1 | 0 | 0 |
| ATP6V0A2 | 0 | 0 |
| SLC39A13 | 0 | 0 |
| COL5A1 | 0 | 0 |
| FAM120AOS | 0 | 0 |
| EFEMP2 | 0 | 0 |
| FBLN5 | 0 | 0 |
| ABCC6 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| PYRITHIONE | 4 | LOX |
| ZILEUTON | 4 | LOX |
| DISULFIRAM | 4 | LOX |
| PARGYLINE | 4 | PYCR1 |
| THIRAM | 2 | LOX |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 4.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| LOX | 15 | Binding:15 |
| PYCR1 | 12 | Binding:12 |
| ABCC6 | 10 | Functional:9, Binding:1 |
| ATP6V1E1 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| ATP6V0A2 | 7.1.2.1 | P-type H+-exporting transporter |
| ABCC6 | 7.6.2.3 | ABC-type glutathione-S-conjugate transporter |
| LOX | 1.4.3.13 | protein-lysine 6-oxidase |
| PYCR1 | 1.5.1.2 | pyrroline-5-carboxylate reductase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 12; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
5 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| PYRITHIONE | 4 | LOX |
| ZILEUTON | 4 | LOX |
| DISULFIRAM | 4 | LOX |
| PARGYLINE | 4 | PYCR1 |
| THIRAM | 2 | LOX |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 2 | LOX, PYCR1 |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 1 | ABCC6 |
| D | Druggable family + AlphaFold only, no drug | 1 | ATP6V0A2 |
| E | Difficult family or no structure, no drug | 8 | EFEMP1, SLC39A13, COL5A1, FAM120AOS, EFEMP2, FBLN5, LTBP4, ATP6V1E1 |
Undrugged target profiles
10 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| EFEMP2 | 0 | LOX, PYCR1 |
| FBLN5 | 0 | LOX |
| EFEMP1 | 0 | — |
| ATP6V0A2 | 0 | — |
| SLC39A13 | 0 | — |
| COL5A1 | 0 | — |
| FAM120AOS | 0 | — |
| ABCC6 | 10 | — |
| LTBP4 | 0 | — |
| ATP6V1E1 | 1 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 6.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 5 |
| PHASE1/PHASE2 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03887208 | PHASE1/PHASE2 | COMPLETED | Therapy of Scars and Cutis Laxa With Autologous Adipose Derived Mesenchymal Stem Cells |
| NCT06330324 | Not specified | ENROLLING_BY_INVITATION | Reproductive Options in Inherited Skin Diseases |
| NCT06330350 | Not specified | RECRUITING | Qualitative Study in Patients With Genodermatoses and Healthcare Professionals on Reproductive Counselling |
| NCT07614997 | Not specified | NOT_YET_RECRUITING | Effectiveness and Safety of the Ulthera® System for Skin Laxity in the Lower Face, Submentum and Neck |
| NCT01293864 | Not specified | TERMINATED | Structural Analysis of Human Tissue |
| NCT01658163 | Not specified | COMPLETED | Use of 2-octyl-cyanoacrylate Together With a Self-adhering Mesh |