Duane-radial ray syndrome

disease
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Also known as acro-renal-ocular syndromeDR syndromeDRRSDuane anomaly with radial abnormalities and deafnessDuane anomaly with radial ray abnormalities and deafnessOkihiro syndrome

Summary

Duane-radial ray syndrome (MONDO:0011812) is a disease caused by SALL4 (GenCC Definitive), with 3 cohort genes and 1 clinical trial.

At a glance

  • Causal gene: SALL4 (GenCC Definitive)
  • Cohort genes: 3
  • ClinVar variants: 414
  • Clinical trials: 1

Clinical features

No curated clinical features (Orphanet) for this disease.

Identifiers

Disease identifiers

FieldValue
Canonical nameDuane-radial ray syndrome
Mondo IDMONDO:0011812
OMIM607323
Orphanet93293, 959
DOIDDOID:0060747
SNOMED CT699867001, 720415006
UMLSC1623209
MedGen301647
GARD0009182
Is cancer (heuristic)no

Also known as: acro-renal-ocular syndrome · DR syndrome · DRRS · Duane anomaly with radial abnormalities and deafness · Duane anomaly with radial ray abnormalities and deafness · Duane-radial ray syndrome · Okihiro syndrome

Data availability: 414 ClinVar variants · 4 GenCC gene-disease records.

Disease family

An umbrella term covering 2 Mondo subtypes.

Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › autosomal genetic disease › autosomal dominant disease › Duane-radial ray syndrome

Related subtypes (191): autosomal dominant polycystic liver disease, cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1, tuberous sclerosis, Treacher-Collins syndrome, hereditary breast ovarian cancer syndrome, autosomal dominant polycystic kidney disease, Lynch syndrome, branchio-oto-renal syndrome, autosomal dominant Aarskog syndrome, acroosteolysis dominant type, ADULT syndrome, autosomal dominant Alport syndrome, amelogenesis imperfecta type 1B, Townes-Brocks syndrome, nevoid basal cell carcinoma syndrome, blepharophimosis, ptosis, and epicanthus inversus syndrome, autosomal dominant brachyolmia, branchiooculofacial syndrome, pheochromocytoma/paraganglioma syndrome 4, cataract-aberrant oral frenula-growth delay syndrome, cherubism, autosomal dominant chondrodysplasia punctata, autosomal dominant popliteal pterygium syndrome, blepharocheilodontic syndrome, cochleosaccular degeneration-cataract syndrome, renal coloboma syndrome, Beare-Stevenson cutis gyrata syndrome, autosomal dominant vibratory urticaria, neurohypophyseal diabetes insipidus, autosomal dominant Kenny-Caffey syndrome, Rapp-Hodgkin syndrome, Ehlers-Danlos syndrome, classic type, autosomal dominant Ehlers-Danlos syndrome, vascular type, multiple endocrine neoplasia type 1, Coffin-Siris syndrome 1, isolated congenital adermatoglyphia, Flynn-Aird syndrome, Frasier syndrome, hand-foot-genital syndrome, Holt-Oram syndrome, hyperkeratosis-hyperpigmentation syndrome, autosomal dominant ichthyosis vulgaris, hyper-IgE recurrent infection syndrome 1, autosomal dominant, autosomal dominant keratitis, autosomal dominant keratitis-ichthyosis-hearing loss syndrome, LADD syndrome, trichorhinophalangeal syndrome type II, Noonan syndrome with multiple lentigines, microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability, Marfan syndrome, melanoma, cutaneous malignant, susceptibility to, 2, autosomal dominant primary microcephaly, autosomal dominant progressive external ophthalmoplegia, monilethrix, Muir-Torre syndrome, autosomal dominant myoglobinuria, autosomal dominant centronuclear myopathy, nail-patella syndrome, multiple endocrine neoplasia type 2B, autosomal dominant omodysplasia, pheochromocytoma/paraganglioma syndrome 1, Pelger-Huet anomaly, multiple endocrine neoplasia type 2A, piebaldism, autosomal dominant medullary cystic kidney disease with or without hyperuricemia, generalized juvenile polyposis/juvenile polyposis coli, juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome, Peutz-Jeghers syndrome, contractures, pterygia, and spondylocarpotarsal fusion syndrome 1A, autosomal dominant distal renal tubular acidosis, retinoschisis, autosomal dominant, autosomal dominant Robinow syndrome, scapuloperoneal spinal muscular atrophy, autosomal dominant, autosomal dominant sideroblastic anemia, spondyloepiphyseal dysplasia tarda, autosomal dominant, proximal symphalangism, calcaneonavicular coalition, thanatophoric dysplasia type 1, trichorhinophalangeal syndrome type I, Muckle-Wells syndrome, autosomal dominant hypophosphatemic rickets, von Hippel-Lindau disease, Denys-Drash syndrome, autosomal dominant severe congenital neutropenia, Costello syndrome, EEC syndrome, multiple cutaneous and mucosal venous malformations, diffuse nonepidermolytic palmoplantar keratoderma, Timothy syndrome, pheochromocytoma/paraganglioma syndrome 2, spondyloepimetaphyseal dysplasia with multiple dislocations, Brooke-Spiegler syndrome, macrocephaly-autism syndrome, pheochromocytoma/paraganglioma syndrome 3, PCWH syndrome, heart-hand syndrome, Slovenian type, congenital stationary night blindness autosomal dominant 3, mandibulofacial dysostosis-microcephaly syndrome, multiple endocrine neoplasia type 4, juvenile cataract-microcornea-renal glucosuria syndrome, Crouzon syndrome-acanthosis nigricans syndrome, Birk-Barel syndrome, thrombophilia due to protein S deficiency, autosomal dominant, dyskeratosis congenita, autosomal dominant 2, dyskeratosis congenita, autosomal dominant 3, colorectal cancer, hereditary nonpolyposis, type 6, colorectal cancer, hereditary nonpolyposis, type 7, brain small vessel disease 2A, autosomal dominant, intellectual disability, autosomal dominant 14, intellectual disability, autosomal dominant 15, intellectual disability, autosomal dominant 16, hypopigmentation-punctate palmoplantar keratoderma syndrome, intellectual disability-facial dysmorphism syndrome due to SETD5 haploinsufficiency, postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome, intellectual developmental disorder with microcephaly and with or without ocular malformations or hypogonadotropic hypogonadism, intellectual disability, autosomal dominant 29, intellectual disability, autosomal dominant 30, Houge-Janssens syndrome 2, severe achondroplasia-developmental delay-acanthosis nigricans syndrome, dyskeratosis congenita, autosomal dominant 6, epidermolysis bullosa simplex 6, generalized, with scarring and hair loss, autosomal dominant complex spastic paraplegia, early-onset autosomal dominant Alzheimer disease, muscular dystrophy, limb-girdle, autosomal dominant, Feingold syndrome, Carney complex, neuronopathy, distal hereditary motor, autosomal dominant, autosomal dominant coarctation of aorta, autosomal dominant spondylocostal dysostosis, autosomal dominant hypohidrotic ectodermal dysplasia, Cowden disease, autosomal dominant distal myopathy, autosomal dominant rhegmatogenous retinal detachment, palmoplantar keratoderma-spastic paralysis syndrome, Alagille syndrome due to a JAG1 point mutation, PTEN hamartoma tumor syndrome, gastric adenocarcinoma and proximal polyposis of the stomach, autosomal dominant proximal renal tubular acidosis, autosomal dominant spastic ataxia, Waardenburg syndrome, hereditary retinoblastoma, autosomal dominant hypocalcemia, Li-Fraumeni syndrome, Loeys-Dietz syndrome, hereditary hemorrhagic telangiectasia, hereditary inclusion body myopathy-joint contractures-ophthalmoplegia syndrome, microcephalic osteodysplastic dysplasia, Saul-Wilson type, autosomal dominant intermediate Charcot-Marie-Tooth disease, autosomal dominant cutis laxa, autosomal dominant nonsyndromic hearing loss, autosomal dominant optic atrophy, autosomal dominant Emery-Dreifuss muscular dystrophy, autosomal dominant cerebellar ataxia, autosomal dominant osteopetrosis, autosomal dominant epidermolytic ichthyosis, ventricular arrhythmias due to cardiac ryanodine receptor calcium release deficiency syndrome, distal arthrogryposis type 2B1, neurofibromatosis, autosomal dominant cataract, arthrogryposis, distal, type 2B2, arthrogryposis, distal, type 2B3, Charcot-Marie-Tooth disease, demyelinating, type 1G, Delpire-McNeill syndrome, LAMA5-related multisystemic syndrome, autosomal dominant oculocutaneous albinism, Charcot-Marie-tooth disease, axonal, type 2DD, Pilarowski-Bjornsson syndrome, intellectual disability, autosomal dominant, fatty acyl-CoA reductase 1 upregulation, GUCY2D-related dominant retinopathy, RPE65-related dominant retinopathy, autosomal dominant titinopathy, NOG-related symphalangism spectrum disorder, ALPL-related autosomal dominant hypophosphatasia, MYH10-related neurodevelopmental disorder with congenital anomalies, spastic paraplegia 30A, autosomal dominant, TMEM127-related tumor predisposition, MAX-related tumor predisposition, BMPR1A-related juvenile polyposis syndrome, RP1-related dominant retinopathy, Birt-Hogg-Dube syndrome, inclusion body myopathy and brain white matter abnormalities, KINSSHIP syndrome, autosomal dominant nebulin-related myopathy, IMPG1-related dominant retinopathy, PROM1-related dominant retinopathy, PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome, ALG8-related autosomal dominant polycystic kidney and/or liver disease, NOTCH1-related AOS spectrum disorder, FLNB-associated autosomal dominant filamin related bone disorder, familial antiphospholipid syndrome

Subtypes (2): Okihiro syndrome due to 20q13 microdeletion, Okihiro syndrome due to a point mutation

Genetics & variants

GWAS landscape

No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.

Variant details and genetic-evidence tiers

ClinVar germline variants

414 retrieved; paginated sample, class counts are floors:

207 uncertain significance, 84 likely benign, 38 pathogenic, 36 conflicting classifications of pathogenicity, 19 benign, 17 benign/likely benign, 9 likely pathogenic, 2 not provided, 2 pathogenic/likely pathogenic

ClinVarVariant (HGVS)GeneClassificationReview
3327NC_000020.11:g.(51758515_51770114)(51894383?)delATP9APathogenicno assertion criteria provided
3390931NM_006390.4(IPO8):c.2600_2601delinsAA (p.Phe867Ter)IPO8Pathogeniccriteria provided, single submitter
1362243NC_000020.10:g.(?50400804)(50418947_?)delSALL4Pathogeniccriteria provided, single submitter
1411759NM_020436.5(SALL4):c.1959dup (p.Pro654fs)SALL4Pathogeniccriteria provided, single submitter
1415336NM_020436.5(SALL4):c.1657C>T (p.Gln553Ter)SALL4Pathogeniccriteria provided, single submitter
1455097NM_020436.5(SALL4):c.1717C>T (p.Arg573Ter)SALL4Pathogeniccriteria provided, multiple submitters, no conflicts
1684297NM_020436.5(SALL4):c.1068del (p.Lys357fs)SALL4Pathogeniccriteria provided, single submitter
1697971NM_020436.5(SALL4):c.712C>T (p.Gln238Ter)SALL4Pathogeniccriteria provided, single submitter
1806356NM_020436.5(SALL4):c.2252del (p.Asn751fs)SALL4Pathogeniccriteria provided, single submitter
2015460NM_020436.5(SALL4):c.2280dup (p.Asn761fs)SALL4Pathogeniccriteria provided, single submitter
2035463NM_020436.5(SALL4):c.1472C>A (p.Ser491Ter)SALL4Pathogeniccriteria provided, single submitter
2087818NM_020436.5(SALL4):c.474_475del (p.Glu158fs)SALL4Pathogeniccriteria provided, single submitter
218947NM_020436.5(SALL4):c.410dup (p.Gly138fs)SALL4Pathogenicno assertion criteria provided
2412780NM_020436.5(SALL4):c.1625del (p.Pro542fs)SALL4Pathogeniccriteria provided, single submitter
2502302NM_020436.5(SALL4):c.2456dup (p.Met819fs)SALL4Pathogeniccriteria provided, single submitter
2633659NM_020436.5(SALL4):c.1242_1245del (p.Cys415fs)SALL4Pathogeniccriteria provided, multiple submitters, no conflicts
2728404NM_020436.5(SALL4):c.1994_1995del (p.Phe665fs)SALL4Pathogeniccriteria provided, single submitter
2756162NM_020436.5(SALL4):c.2424dup (p.Ala809fs)SALL4Pathogeniccriteria provided, single submitter
3318NM_020436.5(SALL4):c.1954C>T (p.Gln652Ter)SALL4Pathogenicno assertion criteria provided
3319NM_020436.5(SALL4):c.1054del (p.Ala352fs)SALL4Pathogenicno assertion criteria provided
3320NM_020436.5(SALL4):c.941dup (p.Leu315fs)SALL4Pathogenicno assertion criteria provided
3321NM_020436.5(SALL4):c.1904del (p.Phe635fs)SALL4Pathogenicno assertion criteria provided
3322NM_020436.5(SALL4):c.2593C>T (p.Arg865Ter)SALL4Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
3323NM_020436.5(SALL4):c.2425del (p.Ala809fs)SALL4Pathogenicno assertion criteria provided
3324NM_020436.5(SALL4):c.326del (p.Pro109fs)SALL4Pathogenicno assertion criteria provided
3325NM_020436.5(SALL4):c.523A>T (p.Lys175Ter)SALL4Pathogenicno assertion criteria provided
3326NM_020436.5(SALL4):c.1849C>T (p.Arg617Ter)SALL4Pathogeniccriteria provided, single submitter
3329NM_020436.5(SALL4):c.2663A>G (p.His888Arg)SALL4Pathogenicno assertion criteria provided
3362635NM_020436.5(SALL4):c.1557del (p.Thr520fs)SALL4Pathogeniccriteria provided, single submitter
3639620NM_020436.5(SALL4):c.1291C>T (p.Arg431Ter)SALL4Pathogeniccriteria provided, single submitter

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 6 · Orphanet: 7 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0

GenCC gene–disease validity (cohort genes)

the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.

GeneClassificationInheritanceDiseaseRecords
SALL4DefinitiveAutosomal dominantDuane-radial ray syndrome6

Orphanet rare-disease linkage (cohort genes)

GeneOrphanet IDRare disease
SALL4Orphanet:2307IVIC syndrome
SALL4Orphanet:233Duane retraction syndrome
SALL4Orphanet:261638Okihiro syndrome due to 20q13 microdeletion
SALL4Orphanet:261647Okihiro syndrome due to a point mutation
SALL4Orphanet:959Acro-renal-ocular syndrome
ATP9AOrphanet:528084Non-specific syndromic intellectual disability
IPO8Orphanet:60030Loeys-Dietz syndrome

Cohort genes → proteins

3 cohort genes, 3 distinct canonical proteins.

Evidence partition

SubsetGenes
multi_evidence3

Cohort genes (full)

SymbolHGNCEnsemblUniProtNameEvidence
SALL4HGNC:15924ENSG00000101115Q9UJQ4Sal-like protein 4gencc,clinvar
ATP9AHGNC:13540ENSG00000054793O75110Probable phospholipid-transporting ATPase IIAclinvar
IPO8HGNC:9853ENSG00000133704O15397Importin-8clinvar

Cohort function summary

Lead sentence per gene, UniProt-curated.

SymbolProtein nameFunction (lead sentence)
SALL4Sal-like protein 4Transcription factor with a key role in the maintenance and self-renewal of embryonic and hematopoietic stem cells.
ATP9AProbable phospholipid-transporting ATPase IIAPlays a role in regulating membrane trafficking of cargo proteins, namely endosome to plasma membrane recycling, probably acting through RAB5 and RAB11 activation.
IPO8Importin-8Involved in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1.

Protein-family classification

Druggable: 0 · Difficult: 2 · Unknown: 1 · Druggable fraction: 0.0

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

FamilyGenesFoldFDR
Transcription factor25.5×0.081
Other/Unknown10.6×0.914

Per-gene assignment

SymbolFamilyDruggable?ECInterPro (top 3)
SALL4Transcription factornoZnf_C2H2_type, Znf_C2H2_sf, Sal_C2H2-zinc-finger
ATP9ATranscription factorno7.6.2.1P_typ_ATPase, P-type_ATPase_IV, ATPase_P-typ_transduc_dom_A_sf
IPO8Other/UnknownnoImportin-beta_N, ARM-like, XPO2_central

Expression context

Cohort genes with no expression data: 0.

3 cohort genes are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

BucketGenes
narrow (1-5 tissues)0
moderate (6-20)0
broad (>20)3
unknown0

Top tissues across cohort

TissueCohort genes
oocyte2
secondary oocyte2
male germ line stem cell (sensu Vertebrata) in testis1
Brodmann (1909) area 231
Brodmann (1909) area 461
middle temporal gyrus1
tendon of biceps brachii1

Per-gene tissue summary (top 30)

SymbolBgee breadthFANTOM5 breadthSCXATop tissues
SALL4150broadmarkersecondary oocyte, oocyte, male germ line stem cell (sensu Vertebrata) in testis
ATP9A299ubiquitousmarkermiddle temporal gyrus, Brodmann (1909) area 46, Brodmann (1909) area 23
IPO8272ubiquitousmarkersecondary oocyte, oocyte, tendon of biceps brachii

Protein interactions among cohort

Intra-cohort edges: 0.

Hub genes (top 10 by interactor count)

SymbolInteractor count
IPO83,145
SALL42,243
ATP9A930

Structural data

PDB: 2 · AlphaFold-only: 1 · No structure: 0

Cohort genes with PDB structures (top 30)

SymbolUniProtPDB entries
SALL4Q9UJQ413
ATP9AO751104

AlphaFold-only cohort genes (top 30 by pLDDT)

SymbolUniProtpLDDT
IPO8O1539787.59

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 14. Enrichment computed across 3 evidence-associated genes (3 with Reactome annotation).

Pathways by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 3 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

PathwayCohort genesFoldFDRSample cohort genes
POU5F1 (OCT4), SOX2, NANOG activate genes related to proliferation1292.8×0.039SALL4
Transcriptional regulation of pluripotent stem cells1181.3×0.039SALL4
Gene Silencing by RNA1119.0×0.039IPO8
PTEN Regulation176.1×0.039SALL4
Ion transport by P-type ATPases169.2×0.039ATP9A
Regulation of PTEN gene transcription159.5×0.039SALL4
Transcriptional regulation by small RNAs148.2×0.041IPO8
Ion channel transport132.0×0.051ATP9A
Intracellular signaling by second messengers130.4×0.051SALL4
PIP3 activates AKT signaling122.3×0.062SALL4
Transport of small molecules18.4×0.146ATP9A
Gene expression (Transcription)16.0×0.185IPO8
Developmental Biology14.8×0.208SALL4
Signal Transduction13.4×0.267SALL4

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 3 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO termCohort genesFoldFDRSample cohort genes
negative regulation of exosomal secretion11404.3×0.006ATP9A
regulation of retrograde transport, endosome to Golgi11404.3×0.006ATP9A
regulation of endocytic recycling1561.7×0.010ATP9A
inner cell mass cell proliferation1330.4×0.013SALL4
phospholipid translocation1208.1×0.016ATP9A
ventricular septum development1165.2×0.017SALL4
embryonic limb morphogenesis1133.8×0.018SALL4
retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum1112.3×0.019ATP9A
neuron projection morphogenesis192.1×0.020ATP9A
somatic stem cell population maintenance182.6×0.020SALL4
neural tube closure162.4×0.025SALL4
protein import into nucleus148.0×0.029IPO8
endocytosis131.7×0.041ATP9A
negative regulation of transcription by RNA polymerase II15.9×0.194SALL4
signal transduction15.3×0.199IPO8
positive regulation of transcription by RNA polymerase II15.0×0.200SALL4
regulation of transcription by RNA polymerase II13.9×0.236SALL4

Therapeutics

Drug target analysis

Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 3

Druggability breadth: 2 of 3 evidence-associated genes (67%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Top cohort targets by molecule count

SymbolMoleculesMax phase
SALL400
ATP9A00
IPO800

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 1.

Cohort genes with ChEMBL bioactivity (full, sorted by assay count)

SymbolAssaysType breakdown
SALL412Binding:12
IPO81Binding:1

Cohort enzymes (BRENDA EC)

SymbolEC numbersNames
ATP9A7.6.2.1P-type phospholipid transporter

Pharmacogenomics

Cohort genes with a PharmGKB record: 3; with CPIC/DPWG dosing guidelines: 0.

No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).

Chemical tractability of cohort targets

0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

TierDefinitionGenesSymbols
AApproved (phase 4 drug)0
BPhased (≥1) drug, not yet approved0
CDruggable family + PDB, no drug0
DDruggable family + AlphaFold only, no drug0
EDifficult family or no structure, no drug3SALL4, ATP9A, IPO8

Undrugged target profiles

3 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

SymbolChEMBL assaysDrugged partners (top 3)
SALL412
ATP9A0
IPO81

Clinical trials & evidence

Clinical trials

Clinical trials: 1.

Phase distribution (across all retrieved trials)

PhaseTrials
Not specified1

Top trials by phase / activity

NCTPhaseStatusTitle
NCT03059420Not specifiedRECRUITINGGenetic Studies of Strabismus, Congenital Cranial Dysinnervation Disorders (CCDDs), and Their Associated Anomalies