Ehlers-Danlos syndrome, cardiac valvular type
diseaseOn this page
Also known as cardiac valvular form of autosomal recessive Ehlers-Danlos syndromecardiac valvular form of Ehlers-Danlos syndromecardiac-valvular EDScardiac-valvular Ehlers-Danlos syndromeCOL1A2-related Ehlers-Danlos syndrome, cardiac valvular typecvEDSEDS, cardiac valvular typeEDSCVEhlers-Danlos syndrome, arthrochalasis typeEhlers-Danlos syndrome, autosomal recessive, cardiac valvular form
Summary
Ehlers-Danlos syndrome, cardiac valvular type (MONDO:0009159) is a disease caused by COL1A2 (GenCC Definitive), with 2 cohort genes.
At a glance
- Prevalence: <1 / 1 000 000 (Worldwide) [Orphanet-validated]
- Causal gene: COL1A2 (GenCC Definitive)
- Cohort genes: 2
- ClinVar variants: 69
- Phenotypes (HPO): 49
Clinical features
Epidemiology
Prevalence records
2 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Cases/families | 6 | Worldwide | Validated | |
| Point prevalence | <1 / 1 000 000 | Worldwide | Validated |
Signs & symptoms
Clinical features (HPO)
49 HPO clinical features (Orphanet curated; top 49 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0000974 | Hyperextensible skin | Very frequent (80-99%) |
| HP:0001382 | Joint hypermobility | Very frequent (80-99%) |
| HP:0001653 | Mitral regurgitation | Very frequent (80-99%) |
| HP:0001654 | Abnormal heart valve morphology | Very frequent (80-99%) |
| HP:0000023 | Inguinal hernia | Frequent (30-79%) |
| HP:0000486 | Strabismus | Frequent (30-79%) |
| HP:0000508 | Ptosis | Frequent (30-79%) |
| HP:0000545 | Myopia | Frequent (30-79%) |
| HP:0000678 | Dental crowding | Frequent (30-79%) |
| HP:0000767 | Pectus excavatum | Frequent (30-79%) |
| HP:0000963 | Thin skin | Frequent (30-79%) |
| HP:0000978 | Bruising susceptibility | Frequent (30-79%) |
| HP:0001027 | Soft, doughy skin | Frequent (30-79%) |
| HP:0001058 | Poor wound healing | Frequent (30-79%) |
| HP:0001075 | Atrophic scars | Frequent (30-79%) |
| HP:0001373 | Joint dislocation | Frequent (30-79%) |
| HP:0001659 | Aortic regurgitation | Frequent (30-79%) |
| HP:0001763 | Pes planus | Frequent (30-79%) |
| HP:0001822 | Hallux valgus | Frequent (30-79%) |
| HP:0002616 | Aortic root aneurysm | Frequent (30-79%) |
| HP:0002816 | Genu recurvatum | Frequent (30-79%) |
| HP:0002857 | Genu valgum | Frequent (30-79%) |
| HP:0005180 | Tricuspid regurgitation | Frequent (30-79%) |
| HP:0006109 | Absent phalangeal crease | Frequent (30-79%) |
| HP:0006201 | Hypermobility of distal interphalangeal joints | Frequent (30-79%) |
| HP:0100807 | Long fingers | Frequent (30-79%) |
| HP:0000218 | High palate | Occasional (5-29%) |
| HP:0000414 | Bulbous nose | Occasional (5-29%) |
| HP:0000574 | Thick eyebrow | Occasional (5-29%) |
| HP:0001250 | Seizure | Occasional (5-29%) |
| HP:0001263 | Global developmental delay | Occasional (5-29%) |
| HP:0001519 | Disproportionate tall stature | Occasional (5-29%) |
| HP:0001631 | Atrial septal defect | Occasional (5-29%) |
| HP:0001634 | Mitral valve prolapse | Occasional (5-29%) |
| HP:0001712 | Left ventricular hypertrophy | Occasional (5-29%) |
| HP:0001848 | Calcaneovalgus deformity | Occasional (5-29%) |
| HP:0001852 | Sandal gap | Occasional (5-29%) |
| HP:0002094 | Dyspnea | Occasional (5-29%) |
| HP:0002342 | Intellectual disability, moderate | Occasional (5-29%) |
| HP:0002751 | Kyphoscoliosis | Occasional (5-29%) |
| HP:0002944 | Thoracolumbar scoliosis | Occasional (5-29%) |
| HP:0004322 | Short stature | Occasional (5-29%) |
| HP:0010444 | Pulmonary insufficiency | Occasional (5-29%) |
| HP:0012378 | Fatigue | Occasional (5-29%) |
| HP:0012717 | Severe conductive hearing impairment | Occasional (5-29%) |
| HP:0031610 | Recurrent shoulder dislocation | Occasional (5-29%) |
| HP:0032523 | Tendon thickening | Occasional (5-29%) |
| HP:0100550 | Tendon rupture | Occasional (5-29%) |
| HP:0500041 | Myopic astigmatism | Occasional (5-29%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | Ehlers-Danlos syndrome, cardiac valvular type |
| Mondo ID | MONDO:0009159 |
| MeSH | C536200 |
| OMIM | 225320 |
| Orphanet | 230851 |
| DOID | DOID:0080730 |
| ICD-11 | 531375176 |
| SNOMED CT | 720858001 |
| UMLS | C4303789 |
| MedGen | 929458 |
| GARD | 0012613 |
| Is cancer (heuristic) | no |
Also known as: cardiac valvular form of autosomal recessive Ehlers-Danlos syndrome · cardiac valvular form of Ehlers-Danlos syndrome · cardiac-valvular EDS · cardiac-valvular Ehlers-Danlos syndrome · COL1A2-related Ehlers-Danlos syndrome, cardiac valvular type · cvEDS · EDS, cardiac valvular type · EDSCV · Ehlers-Danlos syndrome, arthrochalasis type · Ehlers-Danlos syndrome, autosomal recessive, cardiac valvular form
Data availability: 69 ClinVar variants · 4 GenCC gene-disease records.
Disease family
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › cardiogenetic disease › Ehlers-Danlos syndrome, cardiac valvular type
Related subtypes (72): ventricular septal defect, hypoplastic left heart syndrome, familial cardiomyopathy, atrial septal defect, familial bicuspid aortic valve, Alagille syndrome, Holt-Oram syndrome, supravalvular aortic stenosis, tetralogy of fallot, DiGeorge syndrome, velocardiofacial syndrome, MGAT2-congenital disorder of glycosylation, dilated cardiomyopathy-hypergonadotropic hypogonadism syndrome, heart defects-limb shortening syndrome, Sengers syndrome, CHARGE syndrome, Ellis-van Creveld syndrome, Larsen-like syndrome, B3GAT3 type, familial atrial myxoma, pericardial effusion, chronic, Peters plus syndrome, alveolar capillary dysplasia with misalignment of pulmonary veins, CHIME syndrome, TARP syndrome, cardiac valvular dysplasia, X-linked, Ehlers-Danlos syndrome, musculocontractural type, patent ductus arteriosus-bicuspid aortic valve-hand anomalies syndrome, postural orthostatic tachycardia syndrome, tricuspid atresia, patent ductus arteriosus, coronary artery disease, autosomal dominant, 1, coronary artery disease, autosomal dominant 2, COG1-congenital disorder of glycosylation, familial retinal arterial macroaneurysm, sinoatrial node dysfunction and deafness, congenital heart defects, multiple types, 3, congenital heart defects, multiple types, 2, 8q24.3 microdeletion syndrome, autosomal dominant intellectual disability-craniofacial anomalies-cardiac defects syndrome, cardiac anomalies - developmental delay - facial dysmorphism syndrome, severe hypotonia-psychomotor developmental delay-strabismus-cardiac septal defect syndrome, transketolase deficiency, lethal left ventricular non-compaction-seizures-hypotonia-cataract-developmental delay syndrome, dextrocardia, LMNA-related cardiocutaneous progeria syndrome, dextro-looped transposition of the great arteries, familial atrioventricular septal defect, ventricular arrhythmias due to cardiac ryanodine receptor calcium release deficiency syndrome, congenital vertebral-cardiac-renal anomalies syndrome, inherited mitral valve disease, Hordnes Engebretsen Knudtson syndrome, mehta lewis patton syndrome, congenital heart defects, multiple types, 5, structural congenital heart disease, multiple types - GATA4, congenital alveolar dysplasia due to FGF10, congenital alveolar dysplasia due to TBX4, GATA6-related congenital heart disease with or without pancreatic agenesis or neonatal diabetes, RBFOX2-related congenital heart disorder, ACTN2-related cardiac and skeletal myopathy, ACTC1-related distal arthrogryposis with congenital heart disease, HAND1 related congenital heart defect, MYH-6 related congenital heart defects, HAND2 related congenital heart defect, congenital heart defects, multiple types, 8, with or without heterotaxy, congenital heart defects, multiple types, 9, cardiac conduction disease with or without cardiomyoopathy, fibromuscular dysplasia of the coronary arteries, TFAP2B-related congenital heart disease spectrum disorder, PLD1-related congenital heart disease, cardiogenetic rhythm disorder, TNNT2-related cardiomyopathy, NOTCH1-related AOS spectrum disorder
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
69 retrieved; paginated sample, class counts are floors:
15 pathogenic, 14 uncertain significance, 13 pathogenic/likely pathogenic, 11 conflicting classifications of pathogenicity, 8 likely pathogenic, 5 benign/likely benign, 1 likely benign, 1 benign, 1 not provided
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1068896 | NM_000089.4(COL1A2):c.2755G>A (p.Gly919Ser) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 17273 | NM_000089.4(COL1A2):c.540+5G>A | COL1A2 | Pathogenic | no assertion criteria provided |
| 17274 | NM_000089.4(COL1A2):c.1404+1G>C | COL1A2 | Pathogenic | no assertion criteria provided |
| 17275 | NM_000089.4(COL1A2):c.1404+1G>A | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 17276 | NM_000089.4(COL1A2):c.70+717A>G | COL1A2 | Pathogenic | no assertion criteria provided |
| 17279 | NM_000089.4(COL1A2):c.3601G>T (p.Glu1201Ter) | COL1A2 | Pathogenic | no assertion criteria provided |
| 17280 | NM_000089.4(COL1A2):c.293dup (p.Pro98_Arg99insTer) | COL1A2 | Pathogenic | no assertion criteria provided |
| 2136569 | NM_000089.4(COL1A2):c.2081G>A (p.Gly694Asp) | COL1A2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 216908 | NM_000089.4(COL1A2):c.3034G>A (p.Gly1012Ser) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 265387 | NM_000089.4(COL1A2):c.577G>A (p.Gly193Ser) | COL1A2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2682437 | NM_000089.4(COL1A2):c.739G>A (p.Gly247Ser) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3594954 | NM_000089.4(COL1A2):c.1523G>T (p.Gly508Val) | COL1A2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 35957 | NM_000089.4(COL1A2):c.838G>A (p.Gly280Ser) | COL1A2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 3767111 | NM_000089.4(COL1A2):c.2774G>A (p.Gly925Asp) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3902393 | NM_000089.4(COL1A2):c.3274_3275del (p.Pro1092fs) | COL1A2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 425650 | NM_000089.4(COL1A2):c.1937G>T (p.Gly646Val) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 426918 | NM_000089.4(COL1A2):c.1136G>A (p.Gly379Glu) | COL1A2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 4525891 | NM_000089.4(COL1A2):c.2837delG | COL1A2 | Pathogenic | criteria provided, single submitter |
| 456802 | NM_000089.4(COL1A2):c.1072G>A (p.Gly358Ser) | COL1A2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 456848 | NM_000089.4(COL1A2):c.982G>A (p.Gly328Ser) | COL1A2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 4689420 | NM_000089.4(COL1A2):c.1199G>C (p.Gly400Ala) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 496615 | NM_000089.4(COL1A2):c.596G>A (p.Gly199Asp) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 579070 | NM_000089.4(COL1A2):c.1127G>T (p.Gly376Val) | COL1A2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 581099 | NM_000089.4(COL1A2):c.433-2A>C | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 585504 | NM_000089.4(COL1A2):c.389G>T (p.Gly130Val) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 618023 | NM_000089.4(COL1A2):c.964G>A (p.Gly322Ser) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 644457 | NM_000089.4(COL1A2):c.1342G>C (p.Gly448Arg) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 848804 | NM_000089.4(COL1A2):c.3250G>T (p.Gly1084Cys) | COL1A2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1341504 | NM_000089.4(COL1A2):c.2711G>A (p.Gly904Glu) | COL1A2 | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1675161 | NM_000089.4(COL1A2):c.432+2T>A | COL1A2 | Likely pathogenic | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 21 · Orphanet: 18 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| COL1A2 | Definitive | Autosomal recessive | Ehlers-Danlos syndrome, cardiac valvular type | 21 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| COL1A2 | Orphanet:1899 | Arthrochalasia Ehlers-Danlos syndrome |
| COL1A2 | Orphanet:216796 | Osteogenesis imperfecta type 1 |
| COL1A2 | Orphanet:216804 | Osteogenesis imperfecta type 2 |
| COL1A2 | Orphanet:216812 | Osteogenesis imperfecta type 3 |
| COL1A2 | Orphanet:216820 | Osteogenesis imperfecta type 4 |
| COL1A2 | Orphanet:230851 | Cardiac-valvular Ehlers-Danlos syndrome |
| COL1A2 | Orphanet:230857 | Ehlers-Danlos/osteogenesis imperfecta syndrome |
| COL1A2 | Orphanet:314029 | High bone mass osteogenesis imperfecta |
| COL1A1 | Orphanet:1310 | Caffey disease |
| COL1A1 | Orphanet:1899 | Arthrochalasia Ehlers-Danlos syndrome |
| COL1A1 | Orphanet:216796 | Osteogenesis imperfecta type 1 |
| COL1A1 | Orphanet:216804 | Osteogenesis imperfecta type 2 |
| COL1A1 | Orphanet:216812 | Osteogenesis imperfecta type 3 |
| COL1A1 | Orphanet:216820 | Osteogenesis imperfecta type 4 |
| COL1A1 | Orphanet:230857 | Ehlers-Danlos/osteogenesis imperfecta syndrome |
| COL1A1 | Orphanet:287 | Classical Ehlers-Danlos syndrome |
| COL1A1 | Orphanet:31112 | Dermatofibrosarcoma protuberans |
| COL1A1 | Orphanet:314029 | High bone mass osteogenesis imperfecta |
Cohort genes → proteins
2 cohort genes, 2 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 2 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| COL1A2 | HGNC:2198 | ENSG00000164692 | P08123 | Collagen alpha-2(I) chain | gencc,clinvar |
| COL1A1 | HGNC:2197 | ENSG00000108821 | P02452 | Collagen alpha-1(I) chain | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| COL1A2 | Collagen alpha-2(I) chain | Type I collagen is a member of group I collagen (fibrillar forming collagen). |
| COL1A1 | Collagen alpha-1(I) chain | Type I collagen is a member of group I collagen (fibrillar forming collagen). |
Protein-family classification
Druggable: 0 · Difficult: 0 · Unknown: 2 · Druggable fraction: 0.0
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Other/Unknown | 2 | 1.8× | 0.312 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| COL1A2 | Other/Unknown | no | Fib_collagen_C, Collagen, Collagen_superfamily | |
| COL1A1 | Other/Unknown | no | Fib_collagen_C, VWF_dom, Collagen |
Expression context
Cohort genes with no expression data: 0.
2 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 2 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| periodontal ligament | 2 |
| skin of hip | 2 |
| stromal cell of endometrium | 2 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| COL1A2 | 295 | ubiquitous | marker | periodontal ligament, stromal cell of endometrium, skin of hip |
| COL1A1 | 298 | ubiquitous | marker | stromal cell of endometrium, skin of hip, periodontal ligament |
Protein interactions among cohort
Intra-cohort edges: 1.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| COL1A1 | 5,341 |
| COL1A2 | 179 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| COL1A1 | COL1A2 | intact |
Structural data
PDB: 2 · AlphaFold-only: 0 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| COL1A1 | P02452 | 14 |
| COL1A2 | P08123 | 5 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 28. Enrichment computed across 2 evidence-associated genes (2 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 2 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Defective VWF binding to collagen type I | 2 | 3806.7× | 9e-07 | COL1A2, COL1A1 |
| Enhanced cleavage of VWF variant by ADAMTS13 | 2 | 2855.0× | 9e-07 | COL1A2, COL1A1 |
| Defective VWF cleavage by ADAMTS13 variant | 2 | 2855.0× | 9e-07 | COL1A2, COL1A1 |
| Enhanced binding of GP1BA variant to VWF multimer:collagen | 2 | 1631.4× | 2e-06 | COL1A2, COL1A1 |
| Defective binding of VWF variant to GPIb:IX:V | 2 | 1631.4× | 2e-06 | COL1A2, COL1A1 |
| GP1b-IX-V activation signalling | 2 | 951.7× | 5e-06 | COL1A2, COL1A1 |
| Anchoring fibril formation | 2 | 761.3× | 6e-06 | COL1A2, COL1A1 |
| Platelet Adhesion to exposed collagen | 2 | 671.8× | 7e-06 | COL1A2, COL1A1 |
| Scavenging by Class A Receptors | 2 | 601.0× | 7e-06 | COL1A2, COL1A1 |
| Fibronectin matrix formation | 2 | 571.0× | 7e-06 | COL1A2, COL1A1 |
| Crosslinking of collagen fibrils | 2 | 571.0× | 7e-06 | COL1A2, COL1A1 |
| Platelet Aggregation (Plug Formation) | 2 | 439.2× | 1e-05 | COL1A2, COL1A1 |
| Syndecan interactions | 2 | 423.0× | 1e-05 | COL1A2, COL1A1 |
| MET activates PTK2 signaling | 2 | 380.7× | 1e-05 | COL1A2, COL1A1 |
| GPVI-mediated activation cascade | 2 | 308.6× | 2e-05 | COL1A2, COL1A1 |
| Collagen chain trimerization | 2 | 259.6× | 3e-05 | COL1A2, COL1A1 |
| Developmental Lineage of Pancreatic Ductal Cells | 2 | 228.4× | 3e-05 | COL1A2, COL1A1 |
| Assembly of collagen fibrils and other multimeric structures | 2 | 200.3× | 4e-05 | COL1A2, COL1A1 |
| Collagen degradation | 2 | 175.7× | 5e-05 | COL1A2, COL1A1 |
| Collagen biosynthesis and modifying enzymes | 2 | 170.4× | 5e-05 | COL1A2, COL1A1 |
| Non-integrin membrane-ECM interactions | 2 | 154.3× | 6e-05 | COL1A2, COL1A1 |
| ECM proteoglycans | 2 | 150.3× | 6e-05 | COL1A2, COL1A1 |
| Integrin cell surface interactions | 2 | 134.3× | 7e-05 | COL1A2, COL1A1 |
| Cell surface interactions at the vascular wall | 2 | 95.2× | 1e-04 | COL1A2, COL1A1 |
| Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell | 2 | 87.2× | 1e-04 | COL1A2, COL1A1 |
| RUNX2 regulates osteoblast differentiation | 1 | 228.4× | 0.005 | COL1A1 |
| SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription | 1 | 154.3× | 0.007 | COL1A2 |
| Interleukin-4 and Interleukin-13 signaling | 1 | 51.4× | 0.019 | COL1A2 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 2 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| skin morphogenesis | 2 | 1404.3× | 2e-05 | COL1A2, COL1A1 |
| blood vessel development | 2 | 374.5× | 2e-04 | COL1A2, COL1A1 |
| cellular response to amino acid stimulus | 2 | 306.4× | 2e-04 | COL1A2, COL1A1 |
| collagen fibril organization | 2 | 224.7× | 2e-04 | COL1A2, COL1A1 |
| skeletal system development | 2 | 125.8× | 6e-04 | COL1A2, COL1A1 |
| protein heterotrimerization | 1 | 8426.0× | 8e-04 | COL1A2 |
| cellular response to vitamin E | 1 | 8426.0× | 8e-04 | COL1A1 |
| cellular response to fluoride | 1 | 4213.0× | 0.001 | COL1A1 |
| tooth mineralization | 1 | 2808.7× | 0.002 | COL1A1 |
| cellular response to acetaldehyde | 1 | 1685.2× | 0.003 | COL1A1 |
| intramembranous ossification | 1 | 1404.3× | 0.003 | COL1A1 |
| cartilage development involved in endochondral bone morphogenesis | 1 | 1203.7× | 0.003 | COL1A1 |
| bone trabecula formation | 1 | 1053.2× | 0.004 | COL1A1 |
| collagen-activated tyrosine kinase receptor signaling pathway | 1 | 648.1× | 0.005 | COL1A1 |
| response to hyperoxia | 1 | 561.7× | 0.005 | COL1A1 |
| negative regulation of cell-substrate adhesion | 1 | 526.6× | 0.005 | COL1A1 |
| collagen metabolic process | 1 | 526.6× | 0.005 | COL1A2 |
| collagen biosynthetic process | 1 | 526.6× | 0.005 | COL1A1 |
| extracellular matrix assembly | 1 | 468.1× | 0.006 | COL1A2 |
| response to steroid hormone | 1 | 421.3× | 0.006 | COL1A1 |
| endochondral ossification | 1 | 271.8× | 0.008 | COL1A1 |
| cellular response to fibroblast growth factor stimulus | 1 | 271.8× | 0.008 | COL1A1 |
| odontogenesis | 1 | 263.3× | 0.008 | COL1A2 |
| response to cAMP | 1 | 255.3× | 0.008 | COL1A1 |
| face morphogenesis | 1 | 247.8× | 0.008 | COL1A1 |
| response to hydrogen peroxide | 1 | 234.1× | 0.008 | COL1A1 |
| embryonic skeletal system development | 1 | 195.9× | 0.009 | COL1A1 |
| protein localization to nucleus | 1 | 175.5× | 0.010 | COL1A1 |
| positive regulation of epithelial to mesenchymal transition | 1 | 159.0× | 0.010 | COL1A1 |
| cellular response to epidermal growth factor stimulus | 1 | 159.0× | 0.010 | COL1A1 |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 2
Druggability breadth: 2 of 2 evidence-associated genes (100%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| COL1A2 | 0 | 0 |
| COL1A1 | 0 | 0 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 0.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| COL1A1 | 8 | Binding:8 |
| COL1A2 | 4 | Functional:4 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 2; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 2 | COL1A2, COL1A1 |
Undrugged target profiles
2 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| COL1A2 | 4 | — |
| COL1A1 | 8 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.