Familial isolated arrhythmogenic right ventricular dysplasia
diseaseOn this page
Also known as familial isolated arrhythmogenic right ventricular cardiomyopathyfamilial isolated arrhythmogenic ventricular cardiomyopathyfamilial isolated arrhythmogenic ventricular dysplasiafamilial isolated ARVCfamilial isolated ARVD
Summary
Familial isolated arrhythmogenic right ventricular dysplasia (MONDO:0016342) is a disease (an umbrella term covering 16 Mondo subtypes) with 11 cohort genes. The dominant Reactome pathway is Formation of the cornified envelope (5 cohort genes).
At a glance
- Prevalence: Unknown (Worldwide)
- Umbrella term: 16 Mondo subtypes
- Cohort genes: 11
- ClinVar variants: 655
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | familial isolated arrhythmogenic right ventricular dysplasia |
| Mondo ID | MONDO:0016342 |
| OMIM | 107970 |
| Orphanet | 217656 |
| ICD-11 | 460188584 |
| SNOMED CT | 715865008 |
| UMLS | C4274968 |
| MedGen | 901869 |
| GARD | 0017129 |
| Is cancer (heuristic) | no |
Also known as: familial isolated arrhythmogenic right ventricular cardiomyopathy · familial isolated arrhythmogenic right ventricular dysplasia · familial isolated arrhythmogenic ventricular cardiomyopathy · familial isolated arrhythmogenic ventricular dysplasia · familial isolated ARVC · familial isolated ARVD
Data availability: 655 ClinVar variants · 18 cell lines.
Disease family
An umbrella term covering 16 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › musculoskeletal system disorder › muscle tissue disorder › cardiomyopathy › familial cardiomyopathy › familial isolated arrhythmogenic right ventricular dysplasia
Related subtypes (8): Naxos disease, fatal infantile encephalocardiomyopathy, familial dilated cardiomyopathy, familial restrictive cardiomyopathy, left ventricular noncompaction, familial hypertrophic cardiomyopathy, NKX2.5-related congenital, conduction and myopathic heart disease, PRKAG2-related cardiomyopathy
Subtypes (16): arrhythmogenic right ventricular dysplasia 13, arrhythmogenic right ventricular dysplasia 1, arrhythmogenic right ventricular dysplasia 3, arrhythmogenic right ventricular dysplasia 4, arrhythmogenic right ventricular dysplasia 5, arrhythmogenic right ventricular dysplasia 6, catecholaminergic polymorphic ventricular tachycardia 1, arrhythmogenic right ventricular dysplasia 8, arrhythmogenic right ventricular dysplasia 9, arrhythmogenic right ventricular dysplasia 10, arrhythmogenic right ventricular dysplasia 11, arrhythmogenic right ventricular dysplasia 12, familial isolated arrhythmogenic ventricular dysplasia, left dominant form, familial isolated arrhythmogenic ventricular dysplasia, biventricular form, familial isolated arrhythmogenic ventricular dysplasia, right dominant form, arrhythmogenic right ventricular dysplasia, familial, 14
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
600 retrieved; paginated sample, class counts are floors:
293 uncertain significance, 131 conflicting classifications of pathogenicity, 104 likely benign, 26 pathogenic, 20 benign/likely benign, 19 pathogenic/likely pathogenic, 4 benign, 3 likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 3233508 | NM_003805.5(CRADD):c.393G>A (p.Trp131Ter) | CRADD | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3773770 | NM_024422.6(DSC2):c.647_654del (p.Thr216fs) | DSC2 | Pathogenic | criteria provided, single submitter |
| 3907391 | NM_001943.5(DSG2):c.1377T>A (p.Tyr459Ter) | DSG2 | Pathogenic | criteria provided, single submitter |
| 1072470 | NM_004415.4(DSP):c.4687_4688del (p.Leu1563fs) | DSP | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 180326 | NM_004415.4(DSP):c.2821C>T (p.Arg941Ter) | DSP | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 199881 | NM_004415.4(DSP):c.3805C>T (p.Arg1269Ter) | DSP | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 264512 | NM_004415.4(DSP):c.3195C>G (p.Tyr1065Ter) | DSP | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 3505484 | NM_004415.4(DSP):c.6475dup (p.Tyr2159fs) | DSP | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 405223 | NM_004415.4(DSP):c.5745dup (p.Lys1916Ter) | DSP | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 405232 | NM_004415.4(DSP):c.5680_5683del (p.Ser1894fs) | DSP | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 44856 | NM_004415.4(DSP):c.1273C>T (p.Arg425Ter) | DSP | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 44928 | NM_004415.4(DSP):c.5428C>T (p.Gln1810Ter) | DSP | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 451211 | NM_004415.4(DSP):c.250C>T (p.Arg84Ter) | DSP | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 4687148 | NM_004415.4(DSP):c.6470_6474del (p.Asp2157fs) | DSP | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 545955 | NM_004415.4(DSP):c.5327_5330del (p.Glu1776fs) | DSP | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 620416 | NM_004415.4(DSP):c.7066A>T (p.Lys2356Ter) | DSP | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1321424 | NM_001005242.3(PKP2):c.2044C>T (p.Gln682Ter) | PKP2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 177995 | NM_001005242.3(PKP2):c.2377del (p.Ser793fs) | PKP2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 188654 | NM_001005242.3(PKP2):c.337-2A>T | PKP2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 201965 | NM_001005242.3(PKP2):c.2254T>C (p.Cys752Arg) | PKP2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 202015 | NM_001005242.3(PKP2):c.837_838del (p.Val280fs) | PKP2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 202018 | NM_001005242.3(PKP2):c.1447del (p.Thr482_Leu483insTer) | PKP2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 202022 | NM_001005242.3(PKP2):c.1881del (p.Lys628fs) | PKP2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 202027 | NM_001005242.3(PKP2):c.397C>T (p.Gln133Ter) | PKP2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 202035 | NM_001005242.3(PKP2):c.1511del (p.Gly504fs) | PKP2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 2573528 | NM_001005242.3(PKP2):c.172G>T (p.Glu58Ter) | PKP2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 36680 | NM_001005242.3(PKP2):c.1481G>A (p.Trp494Ter) | PKP2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 36682 | NM_001005242.3(PKP2):c.1896G>A (p.Trp632Ter) | PKP2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 406553 | NM_001005242.3(PKP2):c.2437_2445+41del | PKP2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 420209 | NM_001005242.3(PKP2):c.2180_2181del (p.Leu727fs) | PKP2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 39 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| SCN5A | Orphanet:101016 | Romano-Ward syndrome |
| SCN5A | Orphanet:130 | Brugada syndrome |
| SCN5A | Orphanet:1344 | Isolated atrial standstill |
| SCN5A | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| SCN5A | Orphanet:166282 | Hereditary sick sinus syndrome |
| SCN5A | Orphanet:228140 | Idiopathic ventricular fibrillation |
| SCN5A | Orphanet:334 | Hereditary atrial fibrillation |
| SCN5A | Orphanet:871 | Hereditary progressive cardiac conduction defect |
| CRADD | Orphanet:88616 | Autosomal recessive non-syndromic intellectual disability |
| TMEM43 | Orphanet:293888 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-left variant |
| TMEM43 | Orphanet:293899 | Inherited isolated arrhythmogenic ventricular dysplasia, biventricular variant |
| TMEM43 | Orphanet:293910 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-right variant |
| TMEM43 | Orphanet:98853 | Autosomal dominant Emery-Dreifuss muscular dystrophy |
| DSC2 | Orphanet:293888 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-left variant |
| DSC2 | Orphanet:293899 | Inherited isolated arrhythmogenic ventricular dysplasia, biventricular variant |
| DSC2 | Orphanet:293910 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-right variant |
| DSC3 | Orphanet:217407 | Hereditary hypotrichosis with recurrent skin vesicles |
| DSG2 | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| DSG2 | Orphanet:293888 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-left variant |
| DSG2 | Orphanet:293899 | Inherited isolated arrhythmogenic ventricular dysplasia, biventricular variant |
| DSG2 | Orphanet:293910 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-right variant |
| DSP | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| DSP | Orphanet:158687 | Lethal acantholytic erosive disorder |
| DSP | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| DSP | Orphanet:293165 | Skin fragility-woolly hair-palmoplantar keratoderma syndrome |
| DSP | Orphanet:293888 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-left variant |
| DSP | Orphanet:293899 | Inherited isolated arrhythmogenic ventricular dysplasia, biventricular variant |
| DSP | Orphanet:293910 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-right variant |
| DSP | Orphanet:369992 | Severe dermatitis-multiple allergies-metabolic wasting syndrome |
| DSP | Orphanet:476096 | Erythrokeratodermia-cardiomyopathy syndrome |
| DSP | Orphanet:50942 | Striate palmoplantar keratoderma |
| DSP | Orphanet:65282 | Carvajal syndrome |
| PKP2 | Orphanet:130 | Brugada syndrome |
| PKP2 | Orphanet:293888 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-left variant |
| PKP2 | Orphanet:293899 | Inherited isolated arrhythmogenic ventricular dysplasia, biventricular variant |
| PKP2 | Orphanet:293910 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-right variant |
| PKP2 | Orphanet:54260 | Left ventricular noncompaction |
| BAG3 | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| BAG3 | Orphanet:199340 | BAG3-related myofibrillar myopathy |
Cohort genes → proteins
11 cohort genes, 9 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 11 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| SCN5A | HGNC:10593 | ENSG00000183873 | Q14524 | Sodium channel protein type 5 subunit alpha | clinvar |
| CRADD | HGNC:2340 | ENSG00000169372 | P78560 | Death domain-containing protein CRADD | clinvar |
| TMEM43 | HGNC:28472 | ENSG00000170876 | Q9BTV4 | Transmembrane protein 43 | clinvar |
| DSC2 | HGNC:3036 | ENSG00000134755 | Q02487 | Desmocollin-2 | clinvar |
| DSC3 | HGNC:3037 | ENSG00000134762 | Q14574 | Desmocollin-3 | clinvar |
| DSG2 | HGNC:3049 | ENSG00000046604 | Q14126 | Desmoglein-2 | clinvar |
| DSP | HGNC:3052 | ENSG00000096696 | P15924 | Desmoplakin | clinvar |
| DSCAS | HGNC:51116 | ENSG00000265888 | DSC1/DSC2 antisense RNA | clinvar | |
| MHRT | HGNC:51291 | myosin heavy chain associated RNA transcript | clinvar | ||
| PKP2 | HGNC:9024 | ENSG00000057294 | Q99959 | Plakophilin-2 | clinvar |
| BAG3 | HGNC:939 | ENSG00000151929 | O95817 | BAG family molecular chaperone regulator 3 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| SCN5A | Sodium channel protein type 5 subunit alpha | Pore-forming subunit of Nav1.5, a voltage-gated sodium (Nav) channel that directly mediates the depolarizing phase of action potentials in excitable membranes. |
| CRADD | Death domain-containing protein CRADD | Adapter protein that associates with PIDD1 and the caspase CASP2 to form the PIDDosome, a complex that activates CASP2 and triggers apoptosis. |
| TMEM43 | Transmembrane protein 43 | May have an important role in maintaining nuclear envelope structure by organizing protein complexes at the inner nuclear membrane. |
| DSC2 | Desmocollin-2 | A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. |
| DSC3 | Desmocollin-3 | A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. |
| DSG2 | Desmoglein-2 | A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. |
| DSP | Desmoplakin | A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. |
| PKP2 | Plakophilin-2 | A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. |
| BAG3 | BAG family molecular chaperone regulator 3 | Co-chaperone and adapter protein that connects different classes of molecular chaperones including heat shock proteins 70 (HSP70s), e.g. |
Protein-family classification
Druggable: 1 · Difficult: 2 · Unknown: 8 · Druggable fraction: 0.09
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Ion channel | 1 | 10.1× | 0.195 |
| Scaffold/PPI | 2 | 3.1× | 0.195 |
| Other/Unknown | 8 | 1.3× | 0.206 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| SCN5A | Ion channel | yes | Na_channel_asu, Ion_trans_dom, Na_channel_a5su | |
| CRADD | Other/Unknown | no | Death_dom, CARD, DEATH-like_dom_sf | |
| TMEM43 | Other/Unknown | no | TMEM43_fam | |
| DSC2 | Other/Unknown | no | Cadherin_Y-type_LIR, Cadherin-like_dom, Desmosomal_cadherin | |
| DSC3 | Other/Unknown | no | Cadherin_Y-type_LIR, Cadherin-like_dom, Desmosomal_cadherin | |
| DSG2 | Other/Unknown | no | Cadherin-like_dom, Desmosomal_cadherin, Cadherin-like_sf | |
| DSP | Scaffold/PPI | no | Plectin_repeat, SH3_domain, Spectrin/alpha-actinin | |
| DSCAS | Other/Unknown | no | ||
| MHRT | Other/Unknown | no | ||
| PKP2 | Other/Unknown | no | Armadillo, ARM-like, ARM-type_fold | |
| BAG3 | Scaffold/PPI | no | WW_dom, BAG_domain, WW_dom_sf |
Expression context
Cohort genes with no expression data: 1.
8 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 10 |
| unknown | 1 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| apex of heart | 2 |
| cardiac ventricle | 2 |
| heart left ventricle | 2 |
| male germ line stem cell (sensu Vertebrata) in testis | 2 |
| gingiva | 2 |
| gingival epithelium | 2 |
| upper leg skin | 2 |
| ascending aorta | 1 |
| descending thoracic aorta | 1 |
| thoracic aorta | 1 |
| oral cavity | 1 |
| colonic mucosa | 1 |
| jejunal mucosa | 1 |
| mucosa of sigmoid colon | 1 |
| hair follicle | 1 |
| skin of hip | 1 |
| primordial germ cell in gonad | 1 |
| skin of leg | 1 |
| heart right ventricle | 1 |
| left ventricle myocardium | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| SCN5A | 161 | broad | yes | apex of heart, heart left ventricle, cardiac ventricle |
| CRADD | 260 | ubiquitous | marker | male germ line stem cell (sensu Vertebrata) in testis, heart left ventricle, cardiac ventricle |
| TMEM43 | 287 | ubiquitous | marker | descending thoracic aorta, thoracic aorta, ascending aorta |
| DSC2 | 256 | ubiquitous | marker | gingival epithelium, gingiva, oral cavity |
| DSC3 | 177 | broad | marker | upper leg skin, gingival epithelium, gingiva |
| DSG2 | 238 | ubiquitous | marker | mucosa of sigmoid colon, colonic mucosa, jejunal mucosa |
| DSP | 253 | ubiquitous | marker | skin of hip, upper leg skin, hair follicle |
| DSCAS | 119 | broad | yes | male germ line stem cell (sensu Vertebrata) in testis, primordial germ cell in gonad, skin of leg |
| MHRT | ||||
| PKP2 | 237 | ubiquitous | marker | heart right ventricle, apex of heart, left ventricle myocardium |
| BAG3 | 286 | ubiquitous | marker | gastrocnemius, skeletal muscle tissue of rectus abdominis, body of tongue |
Protein interactions among cohort
Intra-cohort edges: 16.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| BAG3 | 4,957 |
| DSP | 2,897 |
| SCN5A | 2,090 |
| DSG2 | 2,033 |
| TMEM43 | 1,864 |
| PKP2 | 1,861 |
| DSC2 | 1,659 |
| DSC3 | 1,474 |
| CRADD | 639 |
| DSCAS | 0 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| DSC2 | DSG2 | intact, string_interaction |
| DSC2 | DSP | string_interaction |
| DSC2 | PKP2 | string_interaction |
| DSC2 | TMEM43 | string_interaction |
| DSC3 | DSG2 | intact, string_interaction |
| DSC3 | DSP | string_interaction |
| DSC3 | PKP2 | string_interaction |
| DSC3 | TMEM43 | string_interaction |
| DSG2 | DSP | string_interaction |
| DSG2 | PKP2 | string_interaction |
| DSG2 | SCN5A | string_interaction |
| DSG2 | TMEM43 | string_interaction |
| DSP | PKP2 | string_interaction |
| DSP | TMEM43 | string_interaction |
| PKP2 | SCN5A | string_interaction |
| PKP2 | TMEM43 | string_interaction |
Structural data
PDB: 6 · AlphaFold-only: 3 · No structure: 2
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| SCN5A | Q14524 | 16 |
| DSG2 | Q14126 | 12 |
| DSP | P15924 | 4 |
| CRADD | P78560 | 3 |
| DSC2 | Q02487 | 3 |
| PKP2 | Q99959 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| TMEM43 | Q9BTV4 | 89.92 |
| DSC3 | Q14574 | 75.53 |
| BAG3 | O95817 | 57.98 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 22. Enrichment computed across 11 evidence-associated genes (8 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 8 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Formation of the cornified envelope | 5 | 54.9× | 2e-07 | DSC2, DSC3, DSG2, DSP, PKP2 |
| Keratinization | 5 | 34.8× | 1e-06 | DSC2, DSC3, DSG2, DSP, PKP2 |
| Apoptotic cleavage of cell adhesion proteins | 2 | 259.6× | 2e-04 | DSG2, DSP |
| TP53 Regulates Transcription of Caspase Activators and Caspases | 1 | 119.0× | 0.046 | CRADD |
| Cellular response to heat stress | 1 | 49.2× | 0.072 | BAG3 |
| Interaction between L1 and Ankyrins | 1 | 46.0× | 0.072 | SCN5A |
| Phase 0 - rapid depolarisation | 1 | 43.3× | 0.072 | SCN5A |
| RND1 GTPase cycle | 1 | 33.2× | 0.074 | DSP |
| RND3 GTPase cycle | 1 | 32.4× | 0.074 | DSP |
| RHOG GTPase cycle | 1 | 18.5× | 0.103 | DSG2 |
| Regulation of HSF1-mediated heat shock response | 1 | 17.4× | 0.103 | BAG3 |
| RAC2 GTPase cycle | 1 | 15.9× | 0.103 | DSG2 |
| L1CAM interactions | 1 | 15.0× | 0.103 | SCN5A |
| RAC3 GTPase cycle | 1 | 14.9× | 0.103 | DSG2 |
| Cardiac conduction | 1 | 13.6× | 0.105 | SCN5A |
| Muscle contraction | 1 | 9.7× | 0.136 | SCN5A |
| Axon guidance | 1 | 5.6× | 0.210 | SCN5A |
| Nervous system development | 1 | 5.4× | 0.210 | SCN5A |
| Cellular responses to stress | 1 | 4.6× | 0.229 | BAG3 |
| Cellular responses to stimuli | 1 | 3.9× | 0.251 | BAG3 |
| Neutrophil degranulation | 1 | 2.9× | 0.313 | DSP |
| Developmental Biology | 1 | 1.8× | 0.437 | SCN5A |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 9 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| bundle of His cell-Purkinje myocyte adhesion involved in cell communication | 4 | 1070.0× | 1e-10 | DSC2, DSG2, DSP, PKP2 |
| regulation of ventricular cardiac muscle cell action potential | 4 | 624.1× | 7e-10 | DSC2, DSG2, DSP, PKP2 |
| regulation of heart rate by cardiac conduction | 5 | 208.1× | 7e-10 | SCN5A, DSC2, DSG2, DSP, PKP2 |
| desmosome organization | 3 | 702.2× | 2e-07 | DSG2, DSP, PKP2 |
| cell-cell adhesion | 5 | 56.4× | 2e-07 | DSC2, DSC3, DSG2, DSP, PKP2 |
| homophilic cell-cell adhesion | 3 | 46.8× | 5e-04 | DSC2, DSC3, DSG2 |
| ventricular cardiac muscle cell action potential | 2 | 220.3× | 6e-04 | SCN5A, PKP2 |
| positive regulation of sodium ion transport | 2 | 187.2× | 7e-04 | SCN5A, PKP2 |
| cardiac muscle cell action potential involved in contraction | 2 | 156.0× | 9e-04 | SCN5A, PKP2 |
| extrinsic apoptotic signaling pathway via death domain receptors | 2 | 89.2× | 0.002 | CRADD, BAG3 |
| striated muscle cell apoptotic process | 1 | 1872.4× | 0.005 | BAG3 |
| maintenance of protein localization at cell tip | 1 | 1872.4× | 0.005 | PKP2 |
| sodium ion transport | 2 | 60.4× | 0.005 | SCN5A, TMEM43 |
| cellular response to mechanical stimulus | 2 | 48.0× | 0.006 | CRADD, BAG3 |
| Purkinje myocyte development | 1 | 936.2× | 0.006 | DSG2 |
| positive regulation of cell communication by electrical coupling | 1 | 936.2× | 0.006 | TMEM43 |
| cardiac muscle cell-cardiac muscle cell adhesion | 1 | 936.2× | 0.006 | DSC2 |
| bundle of His cell action potential | 1 | 936.2× | 0.006 | SCN5A |
| AV node cell to bundle of His cell communication | 1 | 936.2× | 0.006 | SCN5A |
| negative regulation of striated muscle cell apoptotic process | 1 | 624.1× | 0.007 | BAG3 |
| regulation of cell-substrate adhesion | 1 | 624.1× | 0.007 | PKP2 |
| membrane depolarization during Purkinje myocyte cell action potential | 1 | 624.1× | 0.007 | SCN5A |
| membrane depolarization during bundle of His cell action potential | 1 | 624.1× | 0.007 | SCN5A |
| protein transport along microtubule | 1 | 624.1× | 0.007 | BAG3 |
| membrane depolarization during atrial cardiac muscle cell action potential | 1 | 624.1× | 0.007 | SCN5A |
| positive regulation of protein localization to cell-cell junction | 1 | 624.1× | 0.007 | DSG2 |
| cell adhesion | 3 | 12.5× | 0.007 | DSC2, DSC3, DSG2 |
| AV node cell action potential | 1 | 468.1× | 0.009 | SCN5A |
| negative regulation of endothelial cell differentiation | 1 | 374.5× | 0.009 | DSG2 |
| maintenance of animal organ identity | 1 | 374.5× | 0.009 | PKP2 |
Therapeutics
Drug target analysis
Approved (phase 4): 1 · Phase ≥3: 1 · Phased (≥1): 1 · Undrugged: 10
Druggability breadth: 4 of 11 evidence-associated genes (36%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| SCN5A | BEPRIDIL |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| SCN5A | 108 | 4 |
| CRADD | 0 | 0 |
| TMEM43 | 0 | 0 |
| DSC2 | 0 | 0 |
| DSC3 | 0 | 0 |
| DSG2 | 0 | 0 |
| DSP | 0 | 0 |
| DSCAS | 0 | 0 |
| MHRT | 0 | 0 |
| PKP2 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| BEPRIDIL | 4 | SCN5A |
| CANDESARTAN CILEXETIL | 4 | SCN5A |
| TELMISARTAN | 4 | SCN5A |
| CARBAMAZEPINE | 4 | SCN5A |
| DIBUCAINE | 4 | SCN5A |
| IMIPRAMINE | 4 | SCN5A |
| DROPERIDOL | 4 | SCN5A |
| PONATINIB | 4 | SCN5A |
| DULOXETINE | 4 | SCN5A |
| PALONOSETRON | 4 | SCN5A |
| VILANTEROL | 4 | SCN5A |
| MEXILETINE HYDROCHLORIDE | 4 | SCN5A |
| UNOPROSTONE ISOPROPYL | 4 | SCN5A |
| LURASIDONE | 4 | SCN5A |
| LETERMOVIR | 4 | SCN5A |
| SERTINDOLE | 4 | SCN5A |
| FEDRATINIB | 4 | SCN5A |
| QUINIDINE | 4 | SCN5A |
| DARUNAVIR | 4 | SCN5A |
| DARIFENACIN | 4 | SCN5A |
| BENZONATATE | 4 | SCN5A |
| TOLTERODINE | 4 | SCN5A |
| RANOLAZINE | 4 | SCN5A |
| PIMOZIDE | 4 | SCN5A |
| NIMODIPINE | 4 | SCN5A |
| FELODIPINE | 4 | SCN5A |
| NICARDIPINE | 4 | SCN5A |
| AMLODIPINE | 4 | SCN5A |
| PHENYTOIN | 4 | SCN5A |
| PALIPERIDONE | 4 | SCN5A |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 0.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| SCN5A | 594 | Binding:380, Functional:98, ADMET:72, Toxicity:43, Unclassified:1 |
| BAG3 | 8 | Binding:8 |
| DSP | 2 | Binding:2 |
| TMEM43 | 1 | Binding:1 |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| SCN5A | 594 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 9; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| BEPRIDIL | 4 | SCN5A |
| CANDESARTAN CILEXETIL | 4 | SCN5A |
| TELMISARTAN | 4 | SCN5A |
| CARBAMAZEPINE | 4 | SCN5A |
| DIBUCAINE | 4 | SCN5A |
| IMIPRAMINE | 4 | SCN5A |
| DROPERIDOL | 4 | SCN5A |
| PONATINIB | 4 | SCN5A |
| DULOXETINE | 4 | SCN5A |
| PALONOSETRON | 4 | SCN5A |
| VILANTEROL | 4 | SCN5A |
| MEXILETINE HYDROCHLORIDE | 4 | SCN5A |
| UNOPROSTONE ISOPROPYL | 4 | SCN5A |
| LURASIDONE | 4 | SCN5A |
| LETERMOVIR | 4 | SCN5A |
| SERTINDOLE | 4 | SCN5A |
| FEDRATINIB | 4 | SCN5A |
| QUINIDINE | 4 | SCN5A |
| DARUNAVIR | 4 | SCN5A |
| DARIFENACIN | 4 | SCN5A |
| BENZONATATE | 4 | SCN5A |
| TOLTERODINE | 4 | SCN5A |
| RANOLAZINE | 4 | SCN5A |
| PIMOZIDE | 4 | SCN5A |
| NIMODIPINE | 4 | SCN5A |
| FELODIPINE | 4 | SCN5A |
| NICARDIPINE | 4 | SCN5A |
| AMLODIPINE | 4 | SCN5A |
| PHENYTOIN | 4 | SCN5A |
| PALIPERIDONE | 4 | SCN5A |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 1 | SCN5A |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 10 | CRADD, TMEM43, DSC2, DSC3, DSG2, DSP, DSCAS, MHRT, PKP2, BAG3 |
Undrugged target profiles
10 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| PKP2 | 0 | SCN5A |
| CRADD | 0 | — |
| TMEM43 | 1 | — |
| DSC2 | 0 | — |
| DSC3 | 0 | — |
| DSG2 | 0 | — |
| DSP | 2 | — |
| DSCAS | 0 | — |
| MHRT | 0 | — |
| BAG3 | 8 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.