Fatty liver disease
diseaseOn this page
Also known as fatty liver
Summary
Fatty liver disease (MONDO:0004790) is a disease with 5 cohort genes (16 GWAS associations across 8 studies) and 203 clinical trials. Top therapeutic interventions include vitamin e, choline, and liraglutide.
At a glance
- Cohort genes: 5
- GWAS associations: 16
- ClinVar variants: 6
- Clinical trials: 203
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | fatty liver disease |
| Mondo ID | MONDO:0004790 |
| MeSH | D005234 |
| DOID | DOID:9452 |
| SNOMED CT | 197321007, 371330000 |
| UMLS | C2711227 |
| MedGen | 398225 |
| Is cancer (heuristic) | no |
Also known as: fatty liver
Data availability: 6 ClinVar variants · 16 GWAS associations (8 studies).
Disease family
An umbrella term covering 4 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › digestive system disorder › hepatobiliary disorder › liver disorder › fatty liver disease
Related subtypes (31): polycystic echinococcosis, autosomal dominant polycystic liver disease, hepatorenal syndrome, hepatitis, hepatic vascular disorder, hepatic porphyria, hepatopulmonary syndrome, cirrhosis of liver, drug-induced liver injury, perinatal jaundice due to hepatocellular damage, Aagenaes syndrome, transient familial neonatal hyperbilirubinemia, hyperbiliverdinemia, transient infantile hypertriglyceridemia and hepatosteatosis, idiopathic copper-associated cirrhosis, familial intrahepatic cholestasis, bile duct cyst, nodular regenerative hyperplasia of the liver, hepatoportal sclerosis, primitive portal vein thrombosis, glycogen storage disease due to liver phosphorylase kinase deficiency, liver and intrahepatic bile duct neoplasm, alcoholic liver disease, early-onset familial noncirrhotic portal hypertension, liver failure, fibrotic liver disease, intestinal failure–associated liver disease, liver abscess (disease), membranous obstruction of inferior vena cava, liver disease, severe congenital, cystic fibrosis-related liver disease
Subtypes (4): visceral steatosis, congenital, metabolic dysfunction-associated steatotic liver disease, alcoholic fatty liver disease, metabolic dysfunction and alcohol associated liver disease
Genetics & variants
GWAS landscape
16 GWAS associations across 8 studies. Top hits map to 9 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs738409 | 2e-49 | PNPLA3 | ? | 1.39 |
| rs12483959 | 1e-30 | PNPLA3 | A | 0.36 |
| rs150641967 | 2e-13 | HAPLN4 | ? | 1.33 |
| rs2294433 | 4e-08 | PNPLA3 | A | 1.43 |
| rs115270700 | 3e-07 | C1QTNF12 - UBE2J2 | C | 1.51 |
| rs202913 | 4e-07 | LINC01643 - ACO2P1 | A | 0.7 |
| rs6718356 | 3e-06 | LINC01121 | A | 1.65 |
| rs2294919 | 4e-06 | PNPLA3 | T | 0.73 |
| rs77420554 | 4e-06 | RNU6-54P - MTCL1P1 | T | 0.64 |
| rs17030882 | 5e-06 | CAMTA1 | T | 1.49 |
| rs708844 | 6e-06 | LINC02463 | A | 0.58 |
| rs2332961 | 6e-06 | LINC01924 | T | 1.35 |
| rs1321257 | 7e-06 | GALNT2 | A | 1.37 |
| rs4879960 | 7e-06 | CLTA | C | 0.53 |
| rs2431741 | 8e-06 | PWWP2A | T | 1.35 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST90727170 | Kim HI | 2026 | 4,256 | 39,770 | Exome sequencing and analysis of 44,028 British South Asians enriched for high autozygosity. |
| GCST90726555 | Jo J | 2025 | 3,524 | 57,445 | Association of Multiple-trait Polygenic Risk Score with Obesity and Cardiometabolic Diseases in Korean Population. |
| GCST90080288 | Backman JD | 2021 | 2,432 | 385,498 | Exome sequencing and analysis of 454,787 UK Biobank participants. |
| GCST90084274 | Backman JD | 2021 | 2,432 | 385,498 | Exome sequencing and analysis of 454,787 UK Biobank participants. |
| GCST90132296 | Lee HW | 2022 | 1,018 | 1,803 | Impact of Evolutionary Changes in Nonalcoholic Fatty Liver Disease on Lung Function Decline. |
| GCST90132297 | Lee HW | 2022 | 951 | 1,771 | Impact of Evolutionary Changes in Nonalcoholic Fatty Liver Disease on Lung Function Decline. |
| GCST90837524 | Koyama S | 2025 | 0 | 0 | Genetics and context for precision health in Greater Boston. |
| GCST90104150 | Choe EK | 2022 | 0 | 0 | Leveraging deep phenotyping from health check-up cohort with 10,000 Korean individuals for phenome-wide association study of 136 traits. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 1 |
| Tier 2: splice/UTR | 1 |
| Tier 3: regulatory | 0 |
| Tier 4: intronic/intergenic | 13 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 15 |
| low_freq (0.01-0.05) | 0 |
| rare (<0.01) | 0 |
| unknown | 0 |
Functional consequences
| Consequence | Count |
|---|---|
| intron_variant | 12 |
| missense_variant | 1 |
| non_coding_transcript_exon_variant | 1 |
| 3_prime_UTR_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| rs738409 | 22 | 43928847 | C>A,G,T | 0.05 | missense_variant | PNPLA3 | 2e-49 | Tier 1: coding |
| rs12483959 | 22 | 43930116 | G>A,C,T | 0.42 | intron_variant | PNPLA3 | 1e-30 | Tier 4: intronic/intergenic |
| rs150641967 | 19 | 19259532 | TGACA>T,TGACAGACA | 0.05 | intron_variant | HAPLN4 | 2e-13 | Tier 4: intronic/intergenic |
| rs2294433 | 22 | 43933395 | G>A,C,T | 0.05 | intron_variant | PNPLA3 | 4e-08 | Tier 4: intronic/intergenic |
| rs115270700 | 1 | 1250144 | T>C,G | 0.05 | non_coding_transcript_exon_variant | C1QTNF12 - UBE2J2 | 3e-07 | Tier 4: intronic/intergenic |
| rs202913 | 22 | 34287761 | G>A,C | 0.05 | intron_variant | LINC01643 - ACO2P1 | 4e-07 | Tier 4: intronic/intergenic |
| rs6718356 | 2 | 45198516 | G>A | 0.05 | intron_variant | LINC01121 | 3e-06 | Tier 4: intronic/intergenic |
| rs2294919 | 22 | 43946445 | C>G,T | 0.05 | 3_prime_UTR_variant | PNPLA3 | 4e-06 | Tier 2: splice/UTR |
| rs77420554 | 13 | 70847558 | C>A,T | 0.05 | intron_variant | RNU6-54P - MTCL1P1 | 4e-06 | Tier 4: intronic/intergenic |
| rs17030882 | 1 | 7445157 | C>T | 0.05 | intron_variant | CAMTA1 | 5e-06 | Tier 4: intronic/intergenic |
| rs708844 | 12 | 115870919 | T>A | 0.05 | intron_variant | LINC02463 | 6e-06 | Tier 4: intronic/intergenic |
| rs2332961 | 18 | 64361382 | C>T | 0.05 | intron_variant | LINC01924 | 6e-06 | Tier 4: intronic/intergenic |
| rs1321257 | 1 | 230169566 | G>A | 0.05 | intron_variant | GALNT2 | 7e-06 | Tier 4: intronic/intergenic |
| rs4879960 | 9 | 36203721 | T>C | 0.05 | intron_variant | CLTA | 7e-06 | Tier 4: intronic/intergenic |
| rs2431741 | 5 | 160110796 | T>A,C,G | 0.05 | intron_variant | PWWP2A | 8e-06 | Tier 4: intronic/intergenic |
ClinVar germline variants
6 retrieved; paginated sample, class counts are floors:
2 pathogenic/likely pathogenic, 1 conflicting classifications of pathogenicity, 1 conflicting classifications of pathogenicity; risk factor, 1 benign, 1 pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 996695 | NM_003680.4(YARS1):c.806T>C (p.Phe269Ser) | LOC126805688 | Pathogenic/Likely pathogenic | no assertion criteria provided |
| 523434 | NM_019023.5(PRMT7):c.1713C>A (p.Cys571Ter) | PRMT7 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 523435 | NM_019023.5(PRMT7):c.322G>T (p.Glu108Ter) | PRMT7 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 214916 | NM_130837.3(OPA1):c.113_130del (p.Arg38_Ser43del) | OPA1 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 341932 | NM_025225.3(PNPLA3):c.444C>G (p.Ile148Met) | PNPLA3 | Conflicting classifications of pathogenicity; risk factor | criteria provided, conflicting classifications |
| 370045 | NC_012920.1(MT-TL1):m.3275C>T | MT-TL1 | Benign | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 15 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| MED12 | Orphanet:1415 | Hardikar syndrome |
| MED12 | Orphanet:293707 | Blepharophimosis-intellectual disability syndrome, MKB type |
| MED12 | Orphanet:776 | Lujan-Fryns syndrome |
| MED12 | Orphanet:777 | X-linked non-syndromic intellectual disability |
| MED12 | Orphanet:93932 | FG syndrome type 1 |
| PRMT7 | Orphanet:464288 | Short stature-brachydactyly-obesity-global developmental delay syndrome |
| MT-TL1 | Orphanet:255210 | Mitochondrial DNA-associated Leigh syndrome |
| MT-TL1 | Orphanet:324525 | Hypertrophic cardiomyopathy with kidney anomalies due to mitochondrial DNA mutation |
| MT-TL1 | Orphanet:480 | Kearns-Sayre syndrome |
| MT-TL1 | Orphanet:550 | MELAS |
| MT-TL1 | Orphanet:551 | MERRF |
| MT-TL1 | Orphanet:663 | Mitochondrial DNA-related progressive external ophthalmoplegia |
| OPA1 | Orphanet:1215 | Autosomal dominant optic atrophy plus syndrome |
| OPA1 | Orphanet:1239 | Behr syndrome |
| OPA1 | Orphanet:98673 | Autosomal dominant optic atrophy, classic form |
Cohort genes → proteins
5 cohort genes, 4 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 5 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| MED12 | HGNC:11957 | ENSG00000184634 | Q93074 | Mediator of RNA polymerase II transcription subunit 12 | clinvar |
| PNPLA3 | HGNC:18590 | ENSG00000100344 | Q9NST1 | 1-acylglycerol-3-phosphate O-acyltransferase PNPLA3 | clinvar |
| PRMT7 | HGNC:25557 | ENSG00000132600 | Q9NVM4 | Protein arginine N-methyltransferase 7 | clinvar |
| MT-TL1 | HGNC:7490 | ENSG00000209082 | mitochondrially encoded tRNA-Leu (UUA/G) 1 | clinvar | |
| OPA1 | HGNC:8140 | ENSG00000198836 | O60313 | Dynamin-like GTPase OPA1, mitochondrial | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| MED12 | Mediator of RNA polymerase II transcription subunit 12 | Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. |
| PNPLA3 | 1-acylglycerol-3-phosphate O-acyltransferase PNPLA3 | Specifically catalyzes coenzyme A (CoA)-dependent acylation of 1-acyl-sn-glycerol 3-phosphate (2-lysophosphatidic acid/LPA) to generate phosphatidic acid (PA), an important metabolic intermediate and precursor for both triglycerides and gl… |
| PRMT7 | Protein arginine N-methyltransferase 7 | Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. |
| OPA1 | Dynamin-like GTPase OPA1, mitochondrial | Dynamin-related GTPase that is essential for normal mitochondrial morphology by mediating fusion of the mitochondrial inner membranes, regulating cristae morphology and maintaining respiratory chain function. |
Protein-family classification
Druggable: 2 · Difficult: 0 · Unknown: 3 · Druggable fraction: 0.4
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Enzyme (other) | 2 | 4.8× | 0.117 |
| Other/Unknown | 3 | 1.1× | 0.608 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| MED12 | Other/Unknown | no | Mediator_Med12, Mediator_Med12_catenin-bd, Mediator_Med12_LCEWAV | |
| PNPLA3 | Other/Unknown | no | PNPLA_dom, Acyl_Trfase/lysoPLipase, PLPL | |
| PRMT7 | Enzyme (other) | yes | 2.1.1.321 | MeTrfase_PRMT7, Arg_MeTrfase, SAM-dependent_MTases_sf |
| MT-TL1 | Other/Unknown | no | ||
| OPA1 | Enzyme (other) | yes | 3.6.5.5 | Dynamin_GTPase, Dynamin, P-loop_NTPase |
Expression context
Cohort genes with no expression data: 0.
5 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 5 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| left ovary | 1 |
| right adrenal gland | 1 |
| right adrenal gland cortex | 1 |
| buccal mucosa cell | 1 |
| pigmented layer of retina | 1 |
| right lobe of liver | 1 |
| cerebellar cortex | 1 |
| cerebellar hemisphere | 1 |
| right hemisphere of cerebellum | 1 |
| caudate nucleus | 1 |
| frontal cortex | 1 |
| right frontal lobe | 1 |
| adrenal tissue | 1 |
| calcaneal tendon | 1 |
| endothelial cell | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| MED12 | 281 | ubiquitous | marker | right adrenal gland cortex, right adrenal gland, left ovary |
| PNPLA3 | 178 | ubiquitous | marker | pigmented layer of retina, buccal mucosa cell, right lobe of liver |
| PRMT7 | 186 | ubiquitous | marker | right hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex |
| MT-TL1 | 118 | ubiquitous | marker | frontal cortex, right frontal lobe, caudate nucleus |
| OPA1 | 288 | ubiquitous | marker | adrenal tissue, calcaneal tendon, endothelial cell |
Protein interactions among cohort
Intra-cohort edges: 0.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| MED12 | 3,322 |
| OPA1 | 2,630 |
| PRMT7 | 2,036 |
| PNPLA3 | 1,441 |
| MT-TL1 | 0 |
Structural data
PDB: 2 · AlphaFold-only: 2 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| OPA1 | O60313 | 11 |
| MED12 | Q93074 | 3 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| PRMT7 | Q9NVM4 | 93.19 |
| PNPLA3 | Q9NST1 | 71.70 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 26. Enrichment computed across 5 evidence-associated genes (4 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Regulation of Apoptosis | 1 | 475.8× | 0.032 | OPA1 |
| Acyl chain remodeling of DAG and TAG | 1 | 407.9× | 0.032 | PNPLA3 |
| Epigenetic regulation of adipogenesis genes by MLL3 and MLL4 complexes | 1 | 53.9× | 0.072 | MED12 |
| Epigenetic regulation of gene expression by MLL3 and MLL4 complexes | 1 | 49.2× | 0.072 | MED12 |
| Respiratory Syncytial Virus Infection Pathway | 1 | 49.2× | 0.072 | MED12 |
| RSV-host interactions | 1 | 39.1× | 0.072 | MED12 |
| Adipogenesis | 1 | 39.1× | 0.072 | MED12 |
| Epigenetic regulation by WDR5-containing histone modifying complexes | 1 | 38.6× | 0.072 | MED12 |
| RMTs methylate histone arginines | 1 | 36.6× | 0.072 | PRMT7 |
| Regulation of lipid metabolism by PPARalpha | 1 | 35.2× | 0.072 | MED12 |
| Transcriptional regulation of white adipocyte differentiation | 1 | 32.4× | 0.072 | MED12 |
| Mitochondrial protein degradation | 1 | 28.6× | 0.075 | OPA1 |
| PPARA activates gene expression | 1 | 23.6× | 0.083 | MED12 |
| MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis | 1 | 20.7× | 0.083 | MED12 |
| Chromatin organization | 1 | 20.4× | 0.083 | PRMT7 |
| Chromatin modifying enzymes | 1 | 18.1× | 0.084 | PRMT7 |
| Epigenetic regulation of gene expression | 1 | 17.8× | 0.084 | MED12 |
| Metabolism of lipids | 1 | 7.9× | 0.169 | MED12 |
| Viral Infection Pathways | 1 | 7.7× | 0.169 | MED12 |
| Infectious disease | 1 | 6.2× | 0.197 | MED12 |
| RNA Polymerase II Transcription | 1 | 5.6× | 0.206 | MED12 |
| Gene expression (Transcription) | 1 | 4.5× | 0.244 | MED12 |
| Generic Transcription Pathway | 1 | 3.8× | 0.270 | MED12 |
| Developmental Biology | 1 | 3.6× | 0.270 | MED12 |
| Disease | 1 | 3.3× | 0.283 | MED12 |
| Metabolism | 1 | 2.9× | 0.302 | MED12 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| triglyceride acyl-chain remodeling | 1 | 4213.0× | 0.004 | PNPLA3 |
| mitochondrial inner membrane fusion | 1 | 4213.0× | 0.004 | OPA1 |
| neural tube closure | 2 | 93.6× | 0.004 | MED12, OPA1 |
| cellular response to 3,3’,5-triiodo-L-thyronine | 1 | 2106.5× | 0.006 | PNPLA3 |
| axis elongation involved in somitogenesis | 1 | 1404.3× | 0.006 | MED12 |
| membrane tubulation | 1 | 1404.3× | 0.006 | OPA1 |
| peptidyl-arginine methylation | 1 | 1053.2× | 0.006 | PRMT7 |
| acylglycerol acyl-chain remodeling | 1 | 1053.2× | 0.006 | PNPLA3 |
| response to sucrose | 1 | 842.6× | 0.007 | PNPLA3 |
| glycerophospholipid metabolic process | 1 | 702.2× | 0.008 | PNPLA3 |
| positive regulation of T-helper 17 cell lineage commitment | 1 | 526.6× | 0.009 | OPA1 |
| embryonic neurocranium morphogenesis | 1 | 468.1× | 0.009 | MED12 |
| peroxisome fission | 1 | 383.0× | 0.010 | OPA1 |
| axonal transport of mitochondrion | 1 | 351.1× | 0.010 | OPA1 |
| GTP metabolic process | 1 | 280.9× | 0.010 | OPA1 |
| mitochondrial fission | 1 | 263.3× | 0.010 | OPA1 |
| Schwann cell development | 1 | 263.3× | 0.010 | MED12 |
| cristae formation | 1 | 263.3× | 0.010 | OPA1 |
| genomic imprinting | 1 | 247.8× | 0.010 | PRMT7 |
| lipid droplet organization | 1 | 234.1× | 0.010 | PNPLA3 |
| inner mitochondrial membrane organization | 1 | 210.7× | 0.010 | OPA1 |
| mitochondrial fusion | 1 | 210.7× | 0.010 | OPA1 |
| white fat cell differentiation | 1 | 210.7× | 0.010 | PNPLA3 |
| negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway | 1 | 210.7× | 0.010 | OPA1 |
| triglyceride catabolic process | 1 | 200.6× | 0.010 | PNPLA3 |
| negative regulation of release of cytochrome c from mitochondria | 1 | 200.6× | 0.010 | OPA1 |
| embryonic brain development | 1 | 200.6× | 0.010 | MED12 |
| triglyceride biosynthetic process | 1 | 183.2× | 0.010 | PNPLA3 |
| post-anal tail morphogenesis | 1 | 183.2× | 0.010 | MED12 |
| protein complex oligomerization | 1 | 168.5× | 0.010 | OPA1 |
Therapeutics
Drugs indicated for this disease
0 approved, 7 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Dapagliflozin | Phase 3 (in late-stage trials) |
| Metformin | Phase 3 (in late-stage trials) |
| OMEGA-3 FATTY ACIDS | Phase 3 (in late-stage trials) |
| Pioglitazone | Phase 3 (in late-stage trials) |
| Rimonabant | Phase 3 (in late-stage trials) |
| Saroglitazar | Phase 3 (in late-stage trials) |
| Vitamin E | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Cannabidiol, Cholic Acid, Fish Oil, Icomidocholic Acid, Icosapent, Pentoxifylline, Spironolactone.
Drug target analysis
Approved (phase 4): 1 · Phase ≥3: 2 · Phased (≥1): 3 · Undrugged: 2
Druggability breadth: 3 of 5 evidence-associated genes (60%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| OPA1 | MOMELOTINIB |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| OPA1 | 2 | 4 |
| MED12 | 1 | 2 |
| PRMT7 | 1 | 3 |
| PNPLA3 | 0 | 0 |
| MT-TL1 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| MOMELOTINIB | 4 | OPA1 |
| ADEMETIONINE | 3 | PRMT7 |
| TIVANTINIB | 3 | OPA1 |
| MOLIBRESIB | 2 | MED12 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 2.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| PRMT7 | 100 | Binding:98, Functional:2 |
| MED12 | 6 | Binding:6 |
| OPA1 | 2 | Binding:2 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| PRMT7 | 2.1.1.321 | type III protein arginine methyltransferase |
| OPA1 | 3.6.5.5 | dynamin GTPase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| PRMT7 | 100 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 5; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
3 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| MOMELOTINIB | 4 | OPA1 |
| TIVANTINIB | 3 | OPA1 |
| MOLIBRESIB | 2 | MED12 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 1 | OPA1 |
| B | Phased (≥1) drug, not yet approved | 2 | MED12, PRMT7 |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 2 | PNPLA3, MT-TL1 |
Undrugged target profiles
2 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| PNPLA3 | 0 | — |
| MT-TL1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 203.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 135 |
| PHASE2 | 21 |
| PHASE4 | 16 |
| PHASE1/PHASE2 | 9 |
| PHASE3 | 8 |
| PHASE1 | 8 |
| EARLY_PHASE1 | 4 |
| PHASE2/PHASE3 | 2 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03851627 | PHASE4 | RECRUITING | Effects of Testosterone Undecanoate vs Placebo on Intrahepatic Fat Content in Overweight/Obese Men With T2DM or Prediabetes and Hypogonadism |
| NCT06989723 | PHASE4 | RECRUITING | Pioglitazone and Empagliflozin for Fatty Liver Disease in Type 2 Diabetes |
| NCT00160407 | PHASE4 | COMPLETED | Orlistat (Xenical) in the Treatment of Overweight Patients With Nonalcoholic Steatohepatitis (NASH) |
| NCT00207311 | PHASE4 | COMPLETED | Study for the Treatment of Significant Steatosis With Xenical Followed by Treatment of Hepatitis C With Pegasys/Copegus |
| NCT00274495 | PHASE4 | TERMINATED | Assessing the Efficacy and Safety of Rosiglitazone Added to Standard Therapy for Hepatitis C Genotype 1 With Fatty Liver |
| NCT00736385 | PHASE4 | TERMINATED | Metformin for the Treatment of Nonalcoholic Fatty Liver Disease (NAFLD) |
| NCT00742326 | PHASE4 | TERMINATED | Pioglitazone to Treat Fatty Liver in Patients With HIV and Hepatitis C Infections |
| NCT01720719 | PHASE4 | UNKNOWN | Atorvastatin Versus Vitamin E in Treatment of Non-alcoholic Fatty Liver Disease |
| NCT01761318 | PHASE4 | COMPLETED | Effect of Liraglutide on Cardiovascular Endpoints in Diabetes Mellitus Type 2 Patients |
| NCT02102646 | PHASE4 | COMPLETED | MRI Substudy; Metabolic Changes Due to Iatrogenic Hypogonadism |
| NCT02210715 | PHASE4 | COMPLETED | Raltegravir-based Antiretroviral Versus Maintaining Any Other Antiretroviral Therapy in HIV Mono-infected Patients |
| NCT02660047 | PHASE4 | COMPLETED | Effect of Liraglutide on Cardiovascular Endpoints in Diabetes Mellitus Type 2 Patients of South Asian Descent |
| NCT02669641 | PHASE4 | UNKNOWN | Complex Imaging Assessment of Steatosis |
| NCT03374358 | PHASE4 | COMPLETED | Effect on Liver Fat and Metabolic Parameters When Switching a Protease Inhibitor or Efavirenz to Raltegravir |
| NCT03646292 | PHASE4 | COMPLETED | Antidiabetic Drugs for Steatotic Liver Disease |
| NCT05898841 | PHASE4 | COMPLETED | Study to Evaluate the Efficacy and Safety of a Rilpivarine-based Antiretroviral Tratment Regimen in HIV- Infected Patients With Liver Metabolic Disease Who Maintain Udetectable HIV Viral Load |
| NCT00063635 | PHASE3 | COMPLETED | Treatment of Nonalcoholic Fatty Liver Disease in Children (TONIC) |
| NCT00244569 | PHASE3 | COMPLETED | Development of a Breath Test for Monitoring Patients With Liver Disease |
| NCT00303537 | PHASE2/PHASE3 | UNKNOWN | Metformin in Non-Alcoholic Fatty Liver Disease |
| NCT00576667 | PHASE3 | TERMINATED | An Efficacy and Safety Study of Rimonabant for Treatment of Nonalcoholic Steatohepatitis (NASH) in Patients Without Diabetes |
| NCT00577148 | PHASE3 | TERMINATED | An Efficacy and Safety Study of Rimonabant for Treatment of Nonalcoholic Steatohepatitis (NASH) in Patients With Type 2 Diabetes |
| NCT00681408 | PHASE2/PHASE3 | COMPLETED | Omega 3 Fish Oil Supplements vs. Placebo for Patients With Non-alcoholic Steatohepatitis (NASH) |
| NCT01934777 | PHASE3 | COMPLETED | Efficacy and Tolerance of Treatment With DHA, Choline and Vitamin E in Children With Non-alcoholic Steatohepatitis |
| NCT01992809 | PHASE3 | COMPLETED | Omega 3 Supplementation in Fatty Liver |
| NCT02265276 | PHASE3 | UNKNOWN | A Prospective, Randomized Trial to Compare saroGLitazar With pioglitAZone in Nonalcoholic Fatty livEr Disease |
| NCT05308160 | PHASE3 | UNKNOWN | A Single Center, Randomized, Open Label, Parallel Group, Phase 3 Study to Evaluate the Efficacy of Dapagliflozin in Subjects With Nonalcoholic Fatty Liver Disease |
| NCT05979779 | PHASE2 | ACTIVE_NOT_RECRUITING | Ph 2 Study of the Safety and Efficacy of Three HU6 Dose Levels and Placebo in Nonalcoholic Steatohepatitis |
| NCT05984745 | PHASE2 | RECRUITING | Effect of CoQ10 on the Outcome of MAFLD Patients |
| NCT06302049 | PHASE1/PHASE2 | RECRUITING | Clinical Study Evaluating the Safety and Efficacy of Esomeprazole in Treatment of Non-alcoholic Steatohepatitis |
| NCT06588699 | PHASE2 | RECRUITING | Digoxin In NASH (CODIN) |
| NCT06599918 | PHASE2 | RECRUITING | Study of the Efficacy and Safety of Nicotinamide in Patients With Liver Fibrosis (NICOFIB) |
| NCT07238985 | PHASE1/PHASE2 | RECRUITING | Cilostazol in the Treatment of Nonalcoholic Fatty Liver Disease |
| NCT07242222 | PHASE1/PHASE2 | RECRUITING | Erdosteine in the Treatment of Nonalcoholic Fatty Liver Disease |
| NCT00013598 | PHASE2 | COMPLETED | Treatment of Nonalcoholic Steatohepatitis With Pioglitazone |
| NCT00068094 | PHASE1/PHASE2 | TERMINATED | The Effect of Good Bacteria on Nonalcoholic Fatty Liver Disease in Diabetics |
| NCT00152815 | PHASE2 | TERMINATED | Non-alcoholic Fatty Liver Disease (NAFLD) in HIV: The Role of Nutritional Interventions |
| NCT00266019 | PHASE2 | COMPLETED | Weight Management in Nonalcoholic Steatohepatitis |
| NCT00323414 | PHASE2 | COMPLETED | Polyunsaturated Fatty Acids (PUFA) in Diabetic Fatty Liver |
| NCT00443079 | PHASE2 | COMPLETED | A Study of Siliphos in Adults With Non-alcoholic Steatohepatitis (NASH) |
| NCT00501592 | PHASE2 | COMPLETED | Study of INT-747 in Patients With Diabetes and Presumed NAFLD |
Drugs tested across these trials (top 30)
Related Atlas pages
- Cohort genes: MED12, PNPLA3, PRMT7, MT-TL1, OPA1
- Drugs: Vitamin E, Choline, Liraglutide, Orlistat, Pioglitazone, Ribavirin, Rimonabant, Bismuth Subcitrate, Cannabidiol, Cilostazol, Cysteamine, Digoxin, Empagliflozin, Erdosteine, Metformin, Niacinamide, Obeticholic Acid, OMEGA-3-ACID ETHYL ESTERS, PEGINTERFERON ALFA-2A, Pegvisomant, Pentoxifylline, Raltegravir, Tesamorelin, Testosterone Undecanoate, Triptorelin, Ademetionine, Bismuth Subcitrate, Ginger, Icomidocholic Acid, Itopride