Summary
Glaucoma (MONDO:0005041) is a disease (an umbrella term covering 11 Mondo subtypes) with 75 cohort genes (860 GWAS associations across 74 studies) and 1,034 clinical trials. The dominant Reactome pathway is Regulation of Complement cascade (6 cohort genes). Top therapeutic interventions include timolol, brimonidine, and latanoprost.
At a glance
- Umbrella term: 11 Mondo subtypes
- Cohort genes: 75
- GWAS associations: 860
- ClinVar variants: 52
- Clinical trials: 1,034
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|
| Canonical name | glaucoma |
| Mondo ID | MONDO:0005041 |
| MeSH | D005901 |
| DOID | DOID:1686 |
| ICD-10-CM | H40, H40-H42 |
| ICD-11 | 499924848 |
| NCIT | C26782 |
| SNOMED CT | 23986001 |
| UMLS | C0017601 |
| MedGen | 42224 |
| Is cancer (heuristic) | no |
Also known as: glaucoma · glaucoma (disease)
Data availability: 52 ClinVar variants · 860 GWAS associations (74 studies) · 3 GenCC gene-disease records · 1 HPO phenotype · 3 cell lines.
Disease family
An umbrella term covering 11 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › disorder of orbital region › eye disorder › glaucoma
Related subtypes (119): ptosis, eye accommodation disease, corneal disorder, asthenopia, lens disorder, keratomalacia, scleral disorder, ocular siderosis, coloboma, luxation of globe, mucopolysaccharidosis type 1, lacrimal apparatus disorder, Foster-Kennedy syndrome, anterior dislocation of lens, uveal disorder, eyelid disorder, ocular hypotension, scotoma, exophthalmos, ophthalmia nodosa, eye degenerative disorder, refractive error, retinal disorder, eye allergy, ocular vascular disorder, optic neuritis, conjunctival disorder, ocular hypertension, Tietz syndrome, Alagille syndrome, glaucoma-sleep apnea syndrome, Marshall syndrome, microcornea-glaucoma-absent frontal sinuses syndrome, nail-patella syndrome, oculodentodigital dysplasia, piebaldism, Sturge-Weber syndrome, cerebrotendinous xanthomatosis, ocular cystinosis, alpha-mannosidosis, megalocornea-intellectual disability syndrome, mucolipidosis type IV, mucopolysaccharidosis type 6, Netherton syndrome, galactosialidosis, Niemann-Pick disease type A, ocular motor apraxia, Cogan type, Peters plus syndrome, isolated Pierre-Robin syndrome, ectodermal dysplasia-blindness syndrome, Sandhoff disease, SHORT syndrome, Sjogren-Larsson syndrome, Smith-Lemli-Opitz syndrome, Tay-Sachs disease, tyrosinemia type II, Ito hypomelanosis, X-linked cone dysfunction syndrome with myopia, red color blindness, oculocerebrorenal syndrome, Lowry-MacLean syndrome, pigment dispersion syndrome, hereditary hyperferritinemia with congenital cataracts, dyssegmental dysplasia-glaucoma syndrome, mevalonic aciduria, familial cavitary optic disk anomaly, blindness - scoliosis - arachnodactyly syndrome, fatty acyl-CoA reductase 1 deficiency, microcephaly-intellectual disability-sensorineural hearing loss-epilepsy-abnormal muscle tone syndrome, neurotrophic keratopathy, Cogan syndrome, atopic keratoconjunctivitis, rhizomelic chondrodysplasia punctata, Ehlers-Danlos syndrome, kyphoscoliotic type 1, IRVAN syndrome, Rothmund-Thomson syndrome type 2, microcornea-corectopia-macular hypoplasia syndrome, isolated anophthalmia-microphthalmia syndrome, Spasmus nutans, toxic maculopathy due to antimalarial drugs, syndromic recessive X-linked ichthyosis, acute zonal occult outer retinopathy, acute annular outer retinopathy, phakomatosis pigmentovascularis, lamellar ichthyosis, idiopathic linear interstitial keratitis, chondroectodermal dysplasia with night blindness, galactosemia, GM1 gangliosidosis, Gaucher disease, visual snow syndrome, extensive peripapillary myelinated nerve fibers, IgG4-related ophthalmic disorder, global developmental delay-visual anomalies-progressive cerebellar atrophy-truncal hypotonia syndrome, vernal keratoconjunctivitis, Gardner syndrome, anterior segment dysgenesis, isolated ankyloblepharon filiforme adnatum, hereditary optic neuropathy, essential strabismus, Axenfeld anomaly, eye neoplasm, isolated blepharochalasis, punctate inner choroidopathy, eye infectious disorder, vitreous body disorder, 9q33.3q34.11 microdeletion syndrome, autoimmune/inflammatory optic neuropathy, LTBP2-related ocular dysgenesis, ocular growth disorder, ocular dysgenesis caused by defects in PAX6 regulation, choroidal neovascularization, anterior segment developmental abnormality with extraocular manifestations, congenital optic disk excavation, neuroocular syndrome, isolated angioid streaks, multiple evanescent white dot syndrome, stellate multiform amelanotic choroidopathy, macular telangiectasia
Subtypes (11): glaucomatous atrophy of optic disk, hypersecretion glaucoma, aqueous misdirection, phacogenic glaucoma, traumatic glaucoma, angle-closure glaucoma, borderline glaucoma, steroid-induced glaucoma, open-angle glaucoma, hereditary glaucoma, secondary early-onset glaucoma
Genetics & variants
GWAS landscape
860 GWAS associations across 74 studies. Top hits map to 13 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|
| rs7030641 | 3e-140 | CDKN2B-AS1 | C | 0.13 |
| rs6475604 | 1e-107 | CDKN2B-AS1 | T | 0.14 |
| rs10918274 | 6e-92 | TMCO1 | T | 1.37 |
| rs4822983 | 7e-90 | CHEK2 | C | 0.12 |
| chr22:29101357 | 2e-88 | | A | 0.11 |
| chr12:83996127 | 4e-86 | | C | 0.1 |
| chr1:165705788 | 6e-84 | | C | 0.15 |
| rs34935520 | 3e-80 | C14orf39 - SALRNA1 | G | 0.1 |
| rs7961422 | 1e-72 | RPL6P25 - SLC6A15 | G | 0.1 |
| rs12133745 | 1e-71 | TMCO1 | C | 0.15 |
| rs1192415 | 3e-67 | WDR82P2 - HSP90B3P | G | 0.11 |
| chr1:165774286 | 1e-65 | | G | 0.26 |
| rs3858145 | 3e-60 | LINC02640 - KRT19P4 | A | 0.09 |
| rs2472493 | 8e-59 | ABCA1 - CT70 | G | 1.19 |
| rs9913911 | 1e-58 | GAS7 | A | 1.19 |
| chr10:70011354 | 4e-58 | | C | 0.09 |
| rs12150284 | 1e-57 | GAS7 | C | 0.09 |
| rs33912345 | 1e-56 | C14orf39, SIX6 | C | 0.09 |
| chr9:104933258 | 5e-55 | | C | 0.16 |
| rs7518099 | 2e-52 | TMCO1 | T | 1.37 |
| chr20:6470094 | 2e-52 | | G | 0.08 |
| chr1:171636338 | 1e-50 | | A | 1.46 |
| chr9:22052735 | 2e-50 | | C | 0.16 |
| chr9:107695539 | 2e-49 | | T | 0.08 |
| rs59454355 | 4e-49 | CAV2 - CAV1 | G | 1.19 |
| rs4657476 | 3e-47 | TMCO1 | C | 0.25 |
| chr17:10127866 | 2e-46 | | G | 0.16 |
| chr1:165687761 | 2e-44 | | A | 0.25 |
| rs28464089 | 2e-43 | AFAP1 | C | 0.07 |
| rs4657477 | 4e-43 | TMCO1 | C | 0.22 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|
| GCST90271893 | Yao X | 2023 | 14,034 | 784,851 | Genome-wide analysis of genetic pleiotropy and causal genes across three age-related ocular disorders. |
| GCST90271895 | Yao X | 2023 | 14,034 | 434,963 | Genome-wide analysis of genetic pleiotropy and causal genes across three age-related ocular disorders. |
| GCST90271894 | Yao X | 2023 | 11,306 | 693,697 | Genome-wide analysis of genetic pleiotropy and causal genes across three age-related ocular disorders. |
| GCST006395 | MacGregor S | 2018 | 11,018 | 126,068 | Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma. |
| GCST90018852 | Sakaue S | 2021 | 10,411 | 474,568 | A cross-population atlas of genetic associations for 220 human phenotypes. |
| GCST90018632 | Sakaue S | 2021 | 8,448 | 168,903 | A cross-population atlas of genetic associations for 220 human phenotypes. |
| GCST90079909 | Backman JD | 2021 | 8,122 | 376,438 | Exome sequencing and analysis of 454,787 UK Biobank participants. |
| GCST90083895 | Backman JD | 2021 | 8,122 | 376,438 | Exome sequencing and analysis of 454,787 UK Biobank participants. |
| GCST009722 | Craig JE | 2020 | 7,947 | 119,318 | Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression. |
| GCST009726 | Craig JE | 2020 | 7,947 | 119,318 | Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|
| Tier 1: coding | 2 |
| Tier 2: splice/UTR | 1 |
| Tier 3: regulatory | 2 |
| Tier 4: intronic/intergenic | 45 |
MAF distribution
| Bucket | Variants |
|---|
| common (>=0.05) | 40 |
| low_freq (0.01-0.05) | 1 |
| rare (<0.01) | 2 |
| unknown | 7 |
Functional consequences
| Consequence | Count |
|---|
| intron_variant | 23 |
| unknown | 17 |
| intergenic_variant | 4 |
| regulatory_region_variant | 2 |
| missense_variant | 1 |
| non_coding_transcript_exon_variant | 1 |
| stop_gained | 1 |
| 3_prime_UTR_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|
| rs7030641 | 9 | 22054041 | C>T | 0.427 | intron_variant | CDKN2B-AS1 | 3e-140 | Tier 4: intronic/intergenic |
| rs6475604 | 9 | 22052735 | T>A,C,G | 0.338 | intron_variant | CDKN2B-AS1 | 1e-107 | Tier 4: intronic/intergenic |
| rs10918274 | 1 | 165745179 | T>A,C,G | 0.12 | intron_variant | TMCO1 | 6e-92 | Tier 4: intronic/intergenic |
| rs4822983 | 22 | 28719078 | C>T | 0.314 | intron_variant | CHEK2 | 7e-90 | Tier 4: intronic/intergenic |
| chr22:29101357 | | | | 0.32 | | | 2e-88 | Tier 4: intronic/intergenic |
| chr12:83996127 | | | | 0.48 | | | 4e-86 | Tier 4: intronic/intergenic |
| chr1:165705788 | | | | 0.141 | | | 6e-84 | Tier 4: intronic/intergenic |
| rs34935520 | 14 | 60624683 | G>A | 0.405 | intron_variant | C14orf39 - SALRNA1 | 3e-80 | Tier 4: intronic/intergenic |
| rs7961422 | 12 | 83672001 | G>C,T | 0.4 | intergenic_variant | RPL6P25 - SLC6A15 | 1e-72 | Tier 4: intronic/intergenic |
| rs12133745 | 1 | 165745445 | C>A,G,T | 0.13 | intron_variant | TMCO1 | 1e-71 | Tier 4: intronic/intergenic |
| rs1192415 | 1 | 91611540 | G>A,C,T | 0.183 | regulatory_region_variant | WDR82P2 - HSP90B3P | 3e-67 | Tier 3: regulatory |
| chr1:165774286 | | | | | | | 1e-65 | Tier 4: intronic/intergenic |
| rs3858145 | 10 | 68252081 | A>G | 0.308 | intergenic_variant | LINC02640 - KRT19P4 | 3e-60 | Tier 4: intronic/intergenic |
| rs2472493 | 9 | 104933567 | G>A,C,T | 0.45 | intron_variant | ABCA1 - CT70 | 8e-59 | Tier 4: intronic/intergenic |
| rs9913911 | 17 | 10127866 | A>G | 0.38 | intron_variant | GAS7 | 1e-58 | Tier 4: intronic/intergenic |
| chr10:70011354 | | | | 0.276 | | | 4e-58 | Tier 4: intronic/intergenic |
| rs12150284 | 17 | 10127773 | C>A,G,T | 0.362 | intron_variant | GAS7 | 1e-57 | Tier 4: intronic/intergenic |
| rs33912345 | 14 | 60509819 | C>A,G | 0.499 | missense_variant | C14orf39, SIX6 | 1e-56 | Tier 1: coding |
| chr9:104933258 | | | | | | | 5e-55 | Tier 4: intronic/intergenic |
| rs7518099 | 1 | 165767643 | C>T | 0.05 | intron_variant | TMCO1 | 2e-52 | Tier 4: intronic/intergenic |
| chr20:6470094 | | | | 0.359 | | | 2e-52 | Tier 4: intronic/intergenic |
| chr1:171636338 | | | | | | | 1e-50 | Tier 4: intronic/intergenic |
| chr9:22052735 | | | | | | | 2e-50 | Tier 4: intronic/intergenic |
| chr9:107695539 | | | | 0.431 | | | 2e-49 | Tier 4: intronic/intergenic |
| rs59454355 | 7 | 116515969 | C>A,G,T | 0.27 | intergenic_variant | CAV2 - CAV1 | 4e-49 | Tier 4: intronic/intergenic |
| rs4657476 | 1 | 165763424 | C>A,T | 0.131 | intron_variant | TMCO1 | 3e-47 | Tier 4: intronic/intergenic |
| chr17:10127866 | | | | | | | 2e-46 | Tier 4: intronic/intergenic |
| chr1:165687761 | | | | 0.139 | | | 2e-44 | Tier 4: intronic/intergenic |
| rs28464089 | 4 | 7888230 | C>A | 0.409 | intron_variant | AFAP1 | 2e-43 | Tier 4: intronic/intergenic |
| rs4657477 | 1 | 165766938 | C>G,T | 0.138 | intron_variant | TMCO1 | 4e-43 | Tier 4: intronic/intergenic |
ClinVar germline variants
52 retrieved; paginated sample, class counts are floors:
26 uncertain significance, 13 likely benign, 11 benign, 1 pathogenic/likely pathogenic, 1 pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|
| 374025 | NM_004380.3(CREBBP):c.3698G>A (p.Arg1233Lys) | CREBBP | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 374184 | NM_001174096.2(ZEB1):c.976C>T (p.Arg326Ter) | ZEB1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 267877 | 46;XX;t(X;22)(q13;q13) | | Uncertain significance | criteria provided, single submitter |
| 2431657 | NM_015313.3(ARHGEF12):c.4449_4455del (p.Met1483fs) | ARHGEF12 | Uncertain significance | criteria provided, single submitter |
| 252960 | NM_000261.2(MYOC):c.823A>T (p.Lys275Ter) | MYOC | Uncertain significance | reviewed by expert panel |
| 293702 | NM_000261.2(MYOC):c.*426C>T | MYOC | Uncertain significance | criteria provided, single submitter |
| 293703 | NM_000261.2(MYOC):c.*331A>G | MYOC | Uncertain significance | criteria provided, single submitter |
| 293704 | NM_000261.2(MYOC):c.*241A>G | MYOC | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 293705 | NM_000261.2(MYOC):c.*188C>T | MYOC | Uncertain significance | criteria provided, single submitter |
| 293706 | NM_000261.2(MYOC):c.*182C>A | MYOC | Uncertain significance | criteria provided, single submitter |
| 293707 | NM_000261.2(MYOC):c.*71G>A | MYOC | Uncertain significance | criteria provided, single submitter |
| 293710 | NM_000261.2(MYOC):c.992C>T (p.Ser331Leu) | MYOC | Uncertain significance | reviewed by expert panel |
| 293712 | NM_000261.2(MYOC):c.871G>A (p.Val291Ile) | MYOC | Uncertain significance | reviewed by expert panel |
| 293713 | NM_000261.2(MYOC):c.865G>A (p.Asp289Asn) | MYOC | Uncertain significance | reviewed by expert panel |
| 293714 | NM_000261.2(MYOC):c.728C>A (p.Thr243Asn) | MYOC | Uncertain significance | reviewed by expert panel |
| 293716 | NM_000261.2(MYOC):c.568G>T (p.Asp190Tyr) | MYOC | Uncertain significance | reviewed by expert panel |
| 293719 | NM_000261.2(MYOC):c.335A>G (p.Glu112Gly) | MYOC | Uncertain significance | reviewed by expert panel |
| 293720 | NM_000261.2(MYOC):c.304T>A (p.Leu102Met) | MYOC | Uncertain significance | reviewed by expert panel |
| 293721 | NM_000261.2(MYOC):c.239C>A (p.Thr80Asn) | MYOC | Uncertain significance | reviewed by expert panel |
| 293722 | NM_000261.2(MYOC):c.224A>G (p.Gln75Arg) | MYOC | Uncertain significance | reviewed by expert panel |
| 874097 | NM_000261.2(MYOC):c.*273G>A | MYOC | Uncertain significance | criteria provided, single submitter |
| 875032 | NM_000261.2(MYOC):c.1408C>T (p.Arg470Cys) | MYOC | Uncertain significance | reviewed by expert panel |
| 875084 | NM_000261.2(MYOC):c.652G>A (p.Glu218Lys) | MYOC | Uncertain significance | reviewed by expert panel |
| 875954 | NM_000261.2(MYOC):c.1272G>C (p.Gln424His) | MYOC | Uncertain significance | reviewed by expert panel |
| 876022 | NM_000261.2(MYOC):c.611C>T (p.Thr204Met) | MYOC | Uncertain significance | reviewed by expert panel |
| 876999 | NM_000261.2(MYOC):c.600A>G (p.Arg200=) | MYOC | Uncertain significance | reviewed by expert panel |
| 877000 | NM_000261.2(MYOC):c.573T>A (p.Thr191=) | MYOC | Uncertain significance | reviewed by expert panel |
| 877041 | NM_000261.2(MYOC):c.31T>C (p.Phe11Leu) | MYOC | Uncertain significance | reviewed by expert panel |
| 193066 | NM_000261.2(MYOC):c.227G>A (p.Arg76Lys) | MYOC | Benign | reviewed by expert panel |
| 196241 | NM_000261.2(MYOC):c.855G>T (p.Thr285=) | MYOC | Benign | reviewed by expert panel |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 12 · Orphanet: 84 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 2
Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)
| Gene | HGNC | Evidence routes |
|---|
| ARHGEF12 | ARHGEF12 | GWAS |
| ANGPT1 | ANGPT1 | GWAS, GenCC, Orphanet |
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|
| ANGPT1 | Moderate | Autosomal dominant | glaucoma | 3 |
| GLIS1 | Limited | Autosomal recessive | glaucoma | |
| PRPF8 | Limited | Autosomal dominant | glaucoma | 8 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|
| ANGPT1 | Orphanet:599418 | Hereditary angioedema with normal C1Inh not related to F12 or PLG variant |
| PRPF8 | Orphanet:528084 | Non-specific syndromic intellectual disability |
| PRPF8 | Orphanet:791 | Retinitis pigmentosa |
| SEMA3C | Orphanet:388 | Hirschsprung disease |
| SIX1 | Orphanet:107 | BOR syndrome |
| SIX1 | Orphanet:52429 | Branchiootic syndrome |
| SIX1 | Orphanet:90635 | Rare autosomal dominant non-syndromic sensorineural deafness type DFNA |
| SIX6 | Orphanet:35612 | Nanophthalmos |
| SIX6 | Orphanet:435930 | Colobomatous optic disc-macular atrophy-chorioretinopathy syndrome |
| SIX6 | Orphanet:98938 | Colobomatous microphthalmia |
| ZEB1 | Orphanet:98973 | Posterior polymorphous corneal dystrophy |
| ZEB1 | Orphanet:98974 | Fuchs endothelial corneal dystrophy |
| CAV1 | Orphanet:220393 | Diffuse cutaneous systemic sclerosis |
| CAV1 | Orphanet:220402 | Limited cutaneous systemic sclerosis |
| CAV1 | Orphanet:275777 | Heritable pulmonary arterial hypertension |
| CAV1 | Orphanet:696206 | Congenital generalized lipodystrophy type 3 |
| ANKH | Orphanet:1416 | Familial calcium pyrophosphate deposition |
| ANKH | Orphanet:1522 | Craniometaphyseal dysplasia |
| CHEK2 | Orphanet:1331 | Familial prostate cancer |
| CHEK2 | Orphanet:145 | Hereditary breast and/or ovarian cancer syndrome |
| CHEK2 | Orphanet:440437 | Familial colorectal cancer Type X |
| CHEK2 | Orphanet:524 | Li-Fraumeni syndrome |
| CHEK2 | Orphanet:668 | Osteosarcoma |
| CFHR3 | Orphanet:329931 | C3 glomerulonephritis |
| TRIOBP | Orphanet:90636 | Rare autosomal recessive non-syndromic sensorineural deafness type DFNB |
| PLCE1 | Orphanet:656 | Hereditary steroid-resistant nephrotic syndrome |
| CDH11 | Orphanet:1299 | Branchioskeletogenital syndrome |
| CDKN2B | Orphanet:618 | Familial melanoma |
| CDKN2B | Orphanet:652 | Multiple endocrine neoplasia type 1 |
| TXNRD2 | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| TXNRD2 | Orphanet:361 | Familial glucocorticoid deficiency |
| TMCO1 | Orphanet:1394 | Cerebrofaciothoracic dysplasia |
| CFTR | Orphanet:399805 | Male infertility with azoospermia or oligozoospermia due to single gene mutation |
| CFTR | Orphanet:48 | Congenital bilateral absence of vas deferens |
| CFTR | Orphanet:498359 | Aquagenic palmoplantar keratoderma |
| CFTR | Orphanet:586 | Cystic fibrosis |
| CFTR | Orphanet:60033 | Idiopathic bronchiectasis |
| CFTR | Orphanet:700124 | Autosomal recessive hereditary chronic pancreatitis |
| ASPM | Orphanet:2512 | Autosomal recessive primary microcephaly |
| BICC1 | Orphanet:730 | Autosomal dominant polycystic kidney disease |
| C14orf39 | Orphanet:399805 | Male infertility with azoospermia or oligozoospermia due to single gene mutation |
| ANTXR1 | Orphanet:2067 | GAPO syndrome |
| ELOVL5 | Orphanet:423296 | Spinocerebellar ataxia type 38 |
| POU6F2 | Orphanet:654 | Nephroblastoma |
| COL11A1 | Orphanet:2021 | Fibrochondrogenesis |
| COL11A1 | Orphanet:440354 | Autosomal dominant myopia-midfacial retrusion-sensorineural hearing loss-rhizomelic dysplasia syndrome |
| COL11A1 | Orphanet:560 | Marshall syndrome |
| COL11A1 | Orphanet:90635 | Rare autosomal dominant non-syndromic sensorineural deafness type DFNA |
| COL11A1 | Orphanet:90654 | Stickler syndrome type 2 |
| PNPT1 | Orphanet:101111 | Spinocerebellar ataxia type 25 |
Cohort genes → proteins
75 cohort genes, 70 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|
| gwas_only | 69 |
| gwas_and_gencc | 1 |
| gwas_and_clinvar | 1 |
| multi_evidence | 4 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|
| ARHGEF12 | HGNC:14193 | ENSG00000196914 | Q9NZN5 | Rho guanine nucleotide exchange factor 12 | gwas,clinvar |
| ANGPT1 | HGNC:484 | ENSG00000154188 | Q15389 | Angiopoietin-1 | gwas,gencc |
| PRPF8 | HGNC:17340 | ENSG00000174231 | Q6P2Q9 | Pre-mRNA-processing-splicing factor 8 | gencc |
| GLIS1 | HGNC:29525 | ENSG00000174332 | Q8NBF1 | Zinc finger protein GLIS1 | gencc |
| SEMA3C | HGNC:10725 | ENSG00000075223 | Q99985 | Semaphorin-3C | gwas |
| SEMA3F | HGNC:10728 | ENSG00000001617 | Q13275 | Semaphorin-3F | gwas |
| SIX1 | HGNC:10887 | ENSG00000126778 | Q15475 | Homeobox protein SIX1 | gwas |
| SIX6 | HGNC:10892 | ENSG00000184302 | O95475 | Homeobox protein SIX6 | gwas |
| SUPT3H | HGNC:11466 | ENSG00000196284 | O75486 | Transcription initiation protein SPT3 homolog | gwas |
| ZEB1 | HGNC:11642 | ENSG00000148516 | P37275 | Zinc finger E-box-binding homeobox 1 | clinvar |
| ELP4 | HGNC:1171 | ENSG00000109911 | Q96EB1 | Elongator complex protein 4 | gwas |
| PLEKHA1 | HGNC:14335 | ENSG00000107679 | Q9HB21 | Pleckstrin homology domain-containing family A member 1 | gwas |
| TES | HGNC:14620 | ENSG00000135269 | Q9UGI8 | Testin | gwas |
| CAV1 | HGNC:1527 | ENSG00000105974 | Q03135 | Caveolin-1 | gwas |
| CAV2 | HGNC:1528 | ENSG00000105971 | P51636 | Caveolin-2 | gwas |
| ANKH | HGNC:15492 | ENSG00000154122 | Q9HCJ1 | Mineralization regulator ANKH | gwas |
| CTTNBP2 | HGNC:15679 | ENSG00000077063 | Q8WZ74 | Cortactin-binding protein 2 | gwas |
| CHEK2 | HGNC:16627 | ENSG00000183765 | O96017 | Serine/threonine-protein kinase Chk2 | gwas |
| FBXO32 | HGNC:16731 | ENSG00000156804 | Q969P5 | F-box only protein 32 | gwas |
| CFHR4 | HGNC:16979 | ENSG00000134365 | Q92496 | Complement factor H-related protein 4 | gwas |
| CFHR3 | HGNC:16980 | ENSG00000116785 | Q02985 | Complement factor H-related protein 3 | gwas |
| TRIOBP | HGNC:17009 | ENSG00000100106 | Q9H2D6 | TRIO and F-actin-binding protein | gwas |
| PLCE1 | HGNC:17175 | ENSG00000138193 | Q9P212 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 | gwas |
| CDH11 | HGNC:1750 | ENSG00000140937 | P55287 | Cadherin-11 | gwas |
| CDKN2B | HGNC:1788 | ENSG00000147883 | P42772 | Cyclin-dependent kinase 4 inhibitor B | gwas |
| TXNRD2 | HGNC:18155 | ENSG00000184470 | Q9NNW7 | Thioredoxin reductase 2, mitochondrial | gwas |
| TMCO1 | HGNC:18188 | ENSG00000143183 | Q9UM00 | Calcium load-activated calcium channel | gwas |
| RBFOX1 | HGNC:18222 | ENSG00000078328 | Q9NWB1 | RNA binding protein fox-1 homolog 1 | gwas |
| FMNL2 | HGNC:18267 | ENSG00000157827 | Q96PY5 | Formin-like protein 2 | gwas |
| CFTR | HGNC:1884 | ENSG00000001626 | P13569 | Cystic fibrosis transmembrane conductance regulator | gwas |
| KCNT2 | HGNC:18866 | ENSG00000162687 | Q6UVM3 | Potassium channel subfamily T member 2 | gwas |
| ASPM | HGNC:19048 | ENSG00000066279 | Q8IZT6 | Abnormal spindle-like microcephaly-associated protein | gwas |
| BICC1 | HGNC:19351 | ENSG00000122870 | Q9H694 | Protein bicaudal C homolog 1 | gwas |
| C14orf39 | HGNC:19849 | ENSG00000179008 | Q8N1H7 | Protein SIX6OS1 | gwas |
| TMEM181 | HGNC:20958 | ENSG00000146433 | Q9P2C4 | Transmembrane protein 181 | gwas |
| ANTXR1 | HGNC:21014 | ENSG00000169604 | Q9H6X2 | Anthrax toxin receptor 1 | gwas |
| ELOVL5 | HGNC:21308 | ENSG00000012660 | Q9NYP7 | Very long chain fatty acid elongase 5 | gwas |
| POU6F2 | HGNC:21694 | ENSG00000106536 | P78424 | POU domain, class 6, transcription factor 2 | gwas |
| COL11A1 | HGNC:2186 | ENSG00000060718 | P12107 | Collagen alpha-1(XI) chain | gwas |
| THSD7A | HGNC:22207 | ENSG00000005108 | Q9UPZ6 | Thrombospondin type-1 domain-containing protein 7A | gwas |
| PNPT1 | HGNC:23166 | ENSG00000138035 | Q8TCS8 | Polyribonucleotide nucleotidyltransferase 1, mitochondrial | gwas |
| CREBBP | HGNC:2348 | ENSG00000005339 | Q92793 | CREB-binding protein | clinvar |
| AFAP1 | HGNC:24017 | ENSG00000196526 | Q8N556 | Actin filament-associated protein 1 | gwas |
| CFHR5 | HGNC:24668 | ENSG00000134389 | Q9BXR6 | Complement factor H-related protein 5 | gwas |
| ZBTB41 | HGNC:24819 | ENSG00000177888 | Q5SVQ8 | Zinc finger and BTB domain-containing protein 41 | gwas |
| EXOC2 | HGNC:24968 | ENSG00000112685 | Q96KP1 | Exocyst complex component 2 | gwas |
| SRBD1 | HGNC:25521 | ENSG00000068784 | Q8N5C6 | S1 RNA-binding domain-containing protein 1 | gwas |
| PTCD2 | HGNC:25734 | ENSG00000049883 | Q8WV60 | Pentatricopeptide repeat-containing protein 2, mitochondrial | gwas |
| DNAJC24 | HGNC:26979 | ENSG00000170946 | Q6P3W2 | DnaJ homolog subfamily C member 24 | gwas |
| PLEKHA7 | HGNC:27049 | ENSG00000166689 | Q6IQ23 | Pleckstrin homology domain-containing family A member 7 | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|
| ARHGEF12 | Rho guanine nucleotide exchange factor 12 | Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPase and may act as GTPase-activating protein (GAP) for GNA12 and GNA13. |
| ANGPT1 | Angiopoietin-1 | Binds and activates TEK/TIE2 receptor by inducing its dimerization and tyrosine phosphorylation. |
| PRPF8 | Pre-mRNA-processing-splicing factor 8 | Plays a role in pre-mRNA splicing as core component of precatalytic, catalytic and postcatalytic spliceosomal complexes, both of the predominant U2-type spliceosome and the minor U12-type spliceosome. |
| GLIS1 | Zinc finger protein GLIS1 | Acts both as a repressor and an activator of transcription. |
| SEMA3C | Semaphorin-3C | Binds to plexin family members and plays an important role in the regulation of developmental processes. |
| SEMA3F | Semaphorin-3F | May play a role in cell motility and cell adhesion. |
| SIX1 | Homeobox protein SIX1 | Transcription factor that is involved in the regulation of cell proliferation, apoptosis and embryonic development. |
| SIX6 | Homeobox protein SIX6 | May be involved in eye development. |
| SUPT3H | Transcription initiation protein SPT3 homolog | Probable transcriptional activator. |
| ZEB1 | Zinc finger E-box-binding homeobox 1 | Acts as a transcriptional repressor. |
| ELP4 | Elongator complex protein 4 | Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). |
| PLEKHA1 | Pleckstrin homology domain-containing family A member 1 | Binds specifically to phosphatidylinositol 3,4-diphosphate (PtdIns3,4P2), but not to other phosphoinositides. |
| TES | Testin | Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. |
| CAV1 | Caveolin-1 | May act as a scaffolding protein within caveolar membranes. |
| CAV2 | Caveolin-2 | May act as a scaffolding protein within caveolar membranes. |
| ANKH | Mineralization regulator ANKH | Transports adenosine triphosphate (ATP) and possibly other nucleoside triphosphates (NTPs) from cytosol to the extracellular space. |
| CTTNBP2 | Cortactin-binding protein 2 | Regulates the dendritic spine distribution of CTTN/cortactin in hippocampal neurons, and thus controls dendritic spinogenesis and dendritic spine maintenance. |
| CHEK2 | Serine/threonine-protein kinase Chk2 | Serine/threonine-protein kinase which is required for checkpoint-mediated cell cycle arrest, activation of DNA repair and apoptosis in response to the presence of DNA double-strand breaks. |
| FBXO32 | F-box only protein 32 | Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. |
| CFHR4 | Complement factor H-related protein 4 | Involved in complement regulation. |
| CFHR3 | Complement factor H-related protein 3 | Might be involved in complement regulation. |
| TRIOBP | TRIO and F-actin-binding protein | Regulates actin cytoskeletal organization, cell spreading and cell contraction by directly binding and stabilizing filamentous F-actin and prevents its depolymerization. |
| PLCE1 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 | The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. |
| CDH11 | Cadherin-11 | Cadherins are calcium-dependent cell adhesion proteins. |
| CDKN2B | Cyclin-dependent kinase 4 inhibitor B | Interacts strongly with CDK4 and CDK6. |
| TXNRD2 | Thioredoxin reductase 2, mitochondrial | Involved in the control of reactive oxygen species levels and the regulation of mitochondrial redox homeostasis. |
| TMCO1 | Calcium load-activated calcium channel | Endoplasmic reticulum (ER) calcium-selective channel preventing intracellular Ca2(+) stores from overfilling and maintaining calcium homeostasis in the ER. |
| RBFOX1 | RNA binding protein fox-1 homolog 1 | RNA-binding protein that regulates alternative splicing events by binding to 5’-UGCAUGU-3’ elements. |
| FMNL2 | Formin-like protein 2 | Plays a role in the regulation of cell morphology and cytoskeletal organization. |
| CFTR | Cystic fibrosis transmembrane conductance regulator | Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. |
| KCNT2 | Potassium channel subfamily T member 2 | Sodium-activated and chloride-activated potassium channel. |
| ASPM | Abnormal spindle-like microcephaly-associated protein | Involved in mitotic spindle regulation and coordination of mitotic processes. |
| BICC1 | Protein bicaudal C homolog 1 | Putative RNA-binding protein. |
| C14orf39 | Protein SIX6OS1 | Meiotic protein that localizes to the central element of the synaptonemal complex and is required for chromosome synapsis during meiotic recombination. |
| TMEM181 | Transmembrane protein 181 | Mediates action of cytolethal distending toxins (CDT), which are secreted by many pathogenic bacteria. |
| ANTXR1 | Anthrax toxin receptor 1 | Plays a role in cell attachment and migration. |
| ELOVL5 | Very long chain fatty acid elongase 5 | Catalyzes the first and rate-limiting reaction of the four reactions that constitute the long-chain fatty acids elongation cycle. |
| POU6F2 | POU domain, class 6, transcription factor 2 | Probable transcription factor likely to be involved in early steps in the differentiation of amacrine and ganglion cells. |
| COL11A1 | Collagen alpha-1(XI) chain | May play an important role in fibrillogenesis by controlling lateral growth of collagen II fibrils. |
| THSD7A | Thrombospondin type-1 domain-containing protein 7A | Plays a role in actin cytoskeleton rearrangement. |
| PNPT1 | Polyribonucleotide nucleotidyltransferase 1, mitochondrial | RNA-binding protein implicated in numerous RNA metabolic processes. |
| CREBBP | CREB-binding protein | Acetylates histones, giving a specific tag for transcriptional activation. |
| AFAP1 | Actin filament-associated protein 1 | Can cross-link actin filaments into both network and bundle structures. |
| CFHR5 | Complement factor H-related protein 5 | Involved in complement regulation. |
| ZBTB41 | Zinc finger and BTB domain-containing protein 41 | May be involved in transcriptional regulation. |
| EXOC2 | Exocyst complex component 2 | Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. |
| SRBD1 | S1 RNA-binding domain-containing protein 1 | DNA- and histone-binding protein that localizes to the central axes of mitotic chromosomes. |
| PTCD2 | Pentatricopeptide repeat-containing protein 2, mitochondrial | Involved in mitochondrial RNA maturation and mitochondrial respiratory chain function. |
| DNAJC24 | DnaJ homolog subfamily C member 24 | Stimulates the ATPase activity of several Hsp70-type chaperones. |
| PLEKHA7 | Pleckstrin homology domain-containing family A member 7 | Required for zonula adherens biogenesis and maintenance. |
Protein-family classification
Druggable: 20 · Difficult: 23 · Unknown: 32 · Druggable fraction: 0.27
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|
| Complement | 7 | 25.0× | 1e-07 |
| Scaffold/PPI | 10 | 2.3× | 0.049 |
| Antibody/Immunoglobulin | 5 | 1.9× | 0.260 |
| Transcription factor | 13 | 1.4× | 0.260 |
| Transporter | 2 | 2.1× | 0.452 |
| Ion channel | 1 | 1.5× | 0.738 |
| Kinase | 2 | 0.7× | 0.975 |
| Other/Unknown | 32 | 0.8× | 0.992 |
| Enzyme (other) | 3 | 0.5× | 0.992 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|
| ARHGEF12 | Scaffold/PPI | no | | DH_dom, GDS_CDC24_CS, PDZ |
| ANGPT1 | Other/Unknown | no | | Fibrinogen_a/b/g_C_dom, Fibrinogen_a/b/g_C_1, Fibrinogen_CS |
| PRPF8 | Other/Unknown | no | | JAMM/MPN+_dom, RNaseH-like_sf, PRO8NT |
| GLIS1 | Transcription factor | no | | Znf_C2H2_type, Znf_C2H2_sf, GLI-like |
| SEMA3C | Antibody/Immunoglobulin | yes | | Semap_dom, Ig_sub, Ig-like_dom |
| SEMA3F | Antibody/Immunoglobulin | yes | | Semap_dom, Ig_sub2, Ig_sub |
| SIX1 | Transcription factor | no | | HD, KN_HD, Homeodomain-like_sf |
| SIX6 | Transcription factor | no | | HD, Homeodomain-like_sf, SIX1_SD |
| SUPT3H | Other/Unknown | no | | TFIID_TAF13, Histone-fold |
| ZEB1 | Transcription factor | no | | HD, Di19_Zn-bd, Homeodomain-like_sf |
| ELP4 | Other/Unknown | no | | Elongator_complex_protein_4, P-loop_NTPase |
| PLEKHA1 | Scaffold/PPI | no | | PH_domain, PH-like_dom_sf, PI-Interact_SigTrans_Reg |
| TES | Transcription factor | no | | Znf_LIM, PET_domain, PET_testin |
| CAV1 | Other/Unknown | no | | Caveolin, Caveolin_CS |
| CAV2 | Other/Unknown | no | | Caveolin, Caveolin_CS |
| ANKH | Other/Unknown | no | | ANKH |
| CTTNBP2 | Scaffold/PPI | no | | Ankyrin_rpt, Cortactin-binding_p2_N, Ankyrin_rpt-contain_sf |
| CHEK2 | Kinase | yes | 2.7.11.1 | FHA_dom, Prot_kinase_dom, Ser/Thr_kinase_AS |
| FBXO32 | Other/Unknown | no | | F-box-like_dom_sf, FBX25/32 |
| CFHR4 | Complement | yes | | Sushi_SCR_CCP_dom, Sushi/SCR/CCP_sf, ComplSys_Reg/VirEntry_Med |
| CFHR3 | Complement | yes | | Sushi_SCR_CCP_dom, Sushi/SCR/CCP_sf, ComplSys_Reg/VirEntry_Med |
| TRIOBP | Scaffold/PPI | no | | PH_domain, PH-like_dom_sf, M-RIP_PH |
| PLCE1 | Enzyme (other) | yes | 3.1.4.11 | C2_dom, RA_dom, PLipase_C_PInositol-sp_X_dom |
| CDH11 | Other/Unknown | no | | Cadherin_Y-type_LIR, Cadherin-like_dom, Cadherin-like_sf |
| CDKN2B | Scaffold/PPI | no | | Ankyrin_rpt, Ankyrin_rpt-contain_sf, Ank_Repeat/CDKN_Inhibitor |
| TXNRD2 | Enzyme (other) | yes | 1.8.1.9 | Pyr_nuc-diS_OxRdtase, Pyr_nucl-diS_OxRdtase_dimer, Thioredoxin/glutathione_Rdtase |
| TMCO1 | Other/Unknown | no | | EMC3/TMCO1, TMCO1 |
| RBFOX1 | Other/Unknown | no | | RRM_dom, Nucleotide-bd_a/b_plait_sf, RBFOX1-3 |
| FMNL2 | Other/Unknown | no | | FH3_dom, GTPase-bd, ARM-like |
| CFTR | Transporter | yes | 2.7.4.3 | ABC_transporter-like_ATP-bd, AAA+_ATPase, CFTR/ABCC7 |
| KCNT2 | Ion channel | yes | | RCK_N, K_chnl_BK_asu, K_chnl_dom |
| ASPM | Antibody/Immunoglobulin | yes | | IQ_motif_EF-hand-BS, CH_dom, ARM-like |
| BICC1 | Other/Unknown | no | | SAM, KH_dom, KH_dom_type_1 |
| C14orf39 | Other/Unknown | no | | SIX6OS1 |
| TMEM181 | Other/Unknown | no | | TMEM181, WLS-like_TM, TMEM181_GOLD |
| ANTXR1 | Other/Unknown | no | | VWF_A, Anthrax_toxin_rcpt_C, Anthrax_toxin_rcpt_extracel |
| ELOVL5 | Other/Unknown | no | | ELO_fam, ELOVL5 |
| POU6F2 | Transcription factor | no | | POU_dom, HD, Homeodomain-like_sf |
| COL11A1 | Other/Unknown | no | | Fib_collagen_C, Laminin_G, Collagen |
| THSD7A | Other/Unknown | no | | TSP1_rpt, TSP1_rpt_sf, TSP1_spondin_dom |
| PNPT1 | Scaffold/PPI | no | 2.7.7.8 | ExoRNase_PH_dom1, S1_domain, KH_dom |
| CREBBP | Transcription factor | no | 2.3.1.48 | Znf_TAZ, Znf_ZZ, Bromodomain |
| AFAP1 | Scaffold/PPI | no | | PH_domain, PH-like_dom_sf, AFAP |
| CFHR5 | Complement | yes | | Sushi_SCR_CCP_dom, Sushi/SCR/CCP_sf, ComplSys_Reg/VirEntry_Med |
| ZBTB41 | Transcription factor | no | | BTB/POZ_dom, SKP1/BTB/POZ_sf, Znf_C2H2_type |
| EXOC2 | Antibody/Immunoglobulin | yes | | IPT_dom, Ig-like_fold, Ig_E-set |
| SRBD1 | Other/Unknown | no | | S1_domain, YqgF/RNaseH-like_dom, RuvA_2-like |
| PTCD2 | Other/Unknown | no | | PPR_rpt, TPR-like_helical_dom_sf, PTCD2 |
| DNAJC24 | Other/Unknown | no | | DnaJ_domain, DPH_MB_dom, DPH_MB_sf |
| PLEKHA7 | Scaffold/PPI | no | | WW_dom, PH_domain, PH-like_dom_sf |
Expression context
Cohort genes with no expression data: 0.
71 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 2 |
| broad (>20) | 73 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|
| male germ line stem cell (sensu Vertebrata) in testis | 14 |
| primordial germ cell in gonad | 10 |
| right lobe of liver | 8 |
| liver | 7 |
| calcaneal tendon | 6 |
| lower esophagus mucosa | 6 |
| ventricular zone | 5 |
| Brodmann (1909) area 23 | 5 |
| parietal pleura | 5 |
| tibia | 5 |
| sural nerve | 5 |
| lower lobe of lung | 4 |
| stromal cell of endometrium | 4 |
| parotid gland | 4 |
| cortical plate | 4 |
| endothelial cell | 4 |
| secondary oocyte | 4 |
| heart right ventricle | 3 |
| adenohypophysis | 3 |
| seminal vesicle | 3 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|
| ARHGEF12 | 288 | ubiquitous | marker | upper leg skin, visceral pleura, heart right ventricle |
| ANGPT1 | 250 | ubiquitous | marker | lower lobe of lung, calcaneal tendon, cranial nerve II |
| PRPF8 | 145 | ubiquitous | marker | adenohypophysis, pituitary gland, ventricular zone |
| GLIS1 | 134 | broad | yes | stromal cell of endometrium, seminal vesicle, prostate gland |
| SEMA3C | 289 | ubiquitous | marker | mammary duct, synovial joint, calcaneal tendon |
| SEMA3F | 289 | ubiquitous | marker | cervix squamous epithelium, gingival epithelium, lower esophagus mucosa |
| SIX1 | 188 | ubiquitous | marker | skeletal muscle tissue of biceps brachii, biceps brachii, parotid gland |
| SIX6 | 34 | tissue_specific | marker | adenohypophysis, pituitary gland, cranial nerve II |
| SUPT3H | 206 | ubiquitous | yes | primordial germ cell in gonad, sperm, male germ line stem cell (sensu Vertebrata) in testis |
| ZEB1 | 287 | ubiquitous | marker | calcaneal tendon, colonic epithelium, tendon |
| ELP4 | 250 | ubiquitous | marker | ventricular zone, calcaneal tendon, primordial germ cell in gonad |
| PLEKHA1 | 280 | ubiquitous | marker | upper leg skin, sperm, Brodmann (1909) area 23 |
| TES | 267 | ubiquitous | marker | cauda epididymis, seminal vesicle, saphenous vein |
| CAV1 | 287 | ubiquitous | marker | parietal pleura, lower lobe of lung, pleura |
| CAV2 | 290 | ubiquitous | marker | lower lobe of lung, heart right ventricle, blood vessel layer |
| ANKH | 273 | ubiquitous | marker | tibia, parotid gland, inferior vagus X ganglion |
| CTTNBP2 | 230 | broad | marker | cortical plate, corpus callosum, embryo |
| CHEK2 | 183 | ubiquitous | marker | primordial germ cell in gonad, lower esophagus mucosa, male germ line stem cell (sensu Vertebrata) in testis |
| FBXO32 | 257 | ubiquitous | marker | cardiac muscle of right atrium, deltoid, tibialis anterior |
| CFHR4 | 79 | tissue_specific | marker | right lobe of liver, liver, male germ line stem cell (sensu Vertebrata) in testis |
| CFHR3 | 127 | tissue_specific | marker | right lobe of liver, liver, male germ line stem cell (sensu Vertebrata) in testis |
| TRIOBP | 289 | ubiquitous | marker | lower lobe of lung, cervix squamous epithelium, apex of heart |
| PLCE1 | 271 | broad | marker | renal glomerulus, metanephric glomerulus, ventricular zone |
| CDH11 | 277 | ubiquitous | marker | periodontal ligament, stromal cell of endometrium, tibia |
| CDKN2B | 219 | ubiquitous | marker | jejunal mucosa, colonic mucosa, lower esophagus mucosa |
| TXNRD2 | 264 | ubiquitous | marker | right lobe of liver, right adrenal gland cortex, apex of heart |
| TMCO1 | 290 | ubiquitous | marker | calcaneal tendon, choroid plexus epithelium, rectum |
| RBFOX1 | 220 | broad | marker | middle temporal gyrus, Brodmann (1909) area 23, cortical plate |
| FMNL2 | 262 | ubiquitous | marker | inferior vagus X ganglion, corpus callosum, subthalamic nucleus |
| CFTR | 193 | broad | marker | body of pancreas, gall bladder, pancreas |
Protein interactions among cohort
Intra-cohort edges: 61.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|
| CFTR | 7,664 |
| CREBBP | 6,959 |
| CAV1 | 6,673 |
| PRPF8 | 5,582 |
| CHEK2 | 4,795 |
| ZEB1 | 4,171 |
| PNPT1 | 3,741 |
| ETS1 | 3,729 |
| TXNRD2 | 3,712 |
| ABCA1 | 3,551 |
Intra-cohort edges
| A | B | Sources |
|---|
| ABCA1 | PRPF8 | biogrid_interaction |
| AFAP1 | GAS7 | string_interaction |
| AFAP1 | GMDS | string_interaction |
| AFAP1 | SIX6 | string_interaction |
| AFAP1 | TMCO1 | string_interaction |
| ARHGEF12 | KCNT2 | intact |
| ARMS2 | CFH | string_interaction |
| ARMS2 | CFHR1 | string_interaction |
| ARMS2 | CFHR3 | string_interaction |
| ARMS2 | CFHR4 | string_interaction |
| ARMS2 | PLEKHA1 | string_interaction |
| CAV1 | CAV2 | biogrid_interaction, intact, string_interaction |
| CAV1 | CFTR | intact |
| CAV1 | TMCO1 | string_interaction |
| CAV2 | SRBD1 | string_interaction |
| CAV2 | TMCO1 | string_interaction |
| CFH | CFHR1 | intact |
| CFH | CFHR3 | biogrid_interaction, intact |
| CFH | PLEKHA1 | string_interaction |
| CFHR1 | CFHR2 | biogrid_interaction, intact |
| CFHR1 | CFHR5 | intact |
| CFHR1 | PLEKHA1 | string_interaction |
| CFHR1 | ZBTB41 | string_interaction |
| CFHR3 | PLEKHA1 | string_interaction |
| CFHR4 | KCNT2 | string_interaction |
| CFHR4 | ZBTB41 | string_interaction |
| CFHR5 | ZBTB41 | string_interaction |
| CFTR | CTTNBP2 | string_interaction |
| CFTR | ELOVL5 | intact |
| CFTR | EXOC2 | intact |
| CFTR | LMO7 | intact |
| CFTR | LMX1B | intact |
| CFTR | MYOF | intact |
| CFTR | PLEKHA7 | intact |
| CFTR | PRPF8 | intact |
| CFTR | TES | intact |
| CFTR | TMCO1 | intact |
| CFTR | TRIOBP | intact |
| CFTR | TXNRD2 | intact |
| COL11A1 | PLEKHA7 | string_interaction |
| CREBBP | ETS1 | biogrid_interaction |
| DGKG | PLCE1 | string_interaction |
| DNAJC24 | ELP4 | string_interaction |
| ELOVL5 | SRBD1 | string_interaction |
| ELOVL5 | THSD7A | biogrid_interaction, intact |
| FOXC1 | GMDS | string_interaction |
| FOXC1 | SIX1 | string_interaction |
| GAS7 | GMDS | string_interaction |
| GAS7 | SIX6 | string_interaction |
| GAS7 | SRBD1 | string_interaction |
Structural data
PDB: 34 · AlphaFold-only: 36 · No structure: 5
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|
| CREBBP | Q92793 | 144 |
| PRPF8 | Q6P2Q9 | 101 |
| CFTR | P13569 | 58 |
| CFH | P08603 | 51 |
| CHEK2 | O96017 | 38 |
| ETS1 | P14921 | 21 |
| PNPT1 | Q8TCS8 | 11 |
| MYOF | Q9NZM1 | 8 |
| ABCA1 | O95477 | 7 |
| GMDS | O60547 | 7 |
| ANGPT1 | Q15389 | 5 |
| ANTXR1 | Q9H6X2 | 5 |
| ARHGEF12 | Q9NZN5 | 4 |
| SUPT3H | O75486 | 4 |
| RBFOX1 | Q9NWB1 | 4 |
| CFHR2 | P36980 | 4 |
| PLCE1 | Q9P212 | 3 |
| BICC1 | Q9H694 | 3 |
| PLEKHA7 | Q6IQ23 | 3 |
| TES | Q9UGI8 | 2 |
| F13B | P05160 | 2 |
| GAS7 | O60861 | 2 |
| CFHR1 | Q03591 | 2 |
| SIX1 | Q15475 | 1 |
| ZEB1 | P37275 | 1 |
| PLEKHA1 | Q9HB21 | 1 |
| CAV1 | Q03135 | 1 |
| TMCO1 | Q9UM00 | 1 |
| FMNL2 | Q96PY5 | 1 |
| THSD7A | Q9UPZ6 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|
| CFHR3 | Q02985 | 91.93 |
| CDKN2B | P42772 | 90.12 |
| CFHR4 | Q92496 | 87.75 |
| SEMA3C | Q99985 | 85.69 |
| ANKH | Q9HCJ1 | 84.57 |
| SEMA3F | Q13275 | 84.06 |
| CFHR5 | Q9BXR6 | 83.76 |
| PTCD2 | Q8WV60 | 82.95 |
| ELOVL5 | Q9NYP7 | 82.53 |
| CADM2 | Q8N3J6 | 82.53 |
| SIX6 | O95475 | 81.68 |
| EXOC2 | Q96KP1 | 80.82 |
| FBXO32 | Q969P5 | 80.15 |
| TMEM181 | Q9P2C4 | 78.28 |
| CAV2 | P51636 | 78.26 |
| CDH11 | P55287 | 77.65 |
| DGKG | P49619 | 77.53 |
| KCNT2 | Q6UVM3 | 76.42 |
| SRBD1 | Q8N5C6 | 75.68 |
| ELP4 | Q96EB1 | 74.49 |
| LMX1B | O60663 | 70.79 |
| AFAP1 | Q8N556 | 67.09 |
| SH2B3 | Q9UQQ2 | 63.45 |
| ZBTB41 | Q5SVQ8 | 61.91 |
| LPP | Q93052 | 60.99 |
| C14orf39 | Q8N1H7 | 58.97 |
| CTTNBP2 | Q8WZ74 | 58.83 |
| ARMS2 | P0C7Q2 | 58.14 |
| FOXC1 | Q12948 | 56.09 |
| GLIS1 | Q8NBF1 | 53.95 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 321. Enrichment computed across 81 evidence-associated genes (50 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 50 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|
| Regulation of Complement cascade | 6 | 28.0× | 2e-05 | CFHR4, CFHR3, CFHR5, CFH, CFHR1, CFHR2 |
| Kidney development | 2 | 32.6× | 0.177 | SIX1, MECOM |
| Signaling by Nuclear Receptors | 4 | 8.2× | 0.177 | CAV1, CAV2, CREBBP, ABCA1 |
| Defective ABCA1 causes TGD | 1 | 114.2× | 0.262 | ABCA1 |
| RHO GTPases regulate CFTR trafficking | 1 | 76.1× | 0.262 | CFTR |
| Metabolism of nitric oxide: NOS3 activation and regulation | 1 | 45.7× | 0.262 | CAV1 |
| NOSTRIN mediated eNOS trafficking | 1 | 45.7× | 0.262 | CAV1 |
| LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production | 1 | 45.7× | 0.262 | CREBBP |
| MECP2 regulates transcription factors | 1 | 45.7× | 0.262 | RBFOX1 |
| NFE2L2 regulating inflammation associated genes | 1 | 45.7× | 0.262 | CREBBP |
| NFE2L2 regulating ER-stress associated genes | 1 | 45.7× | 0.262 | CREBBP |
| GDP-fucose biosynthesis | 1 | 38.1× | 0.262 | GMDS |
| CDH11 homotypic and heterotypic interactions | 1 | 32.6× | 0.262 | CDH11 |
| Mitochondrial RNA degradation | 1 | 32.6× | 0.262 | PNPT1 |
| AMPK inhibits chREBP transcriptional activation activity | 1 | 28.6× | 0.262 | PRKAG2 |
| Synthesis of diphthamide-EEF2 | 1 | 28.6× | 0.262 | DNAJC24 |
| RUNX1 regulates transcription of genes involved in differentiation of myeloid cells | 1 | 28.6× | 0.262 | CREBBP |
| HDL assembly | 1 | 28.6× | 0.262 | ABCA1 |
| Formation of intermediate mesoderm | 1 | 28.6× | 0.262 | FOXC1 |
| NFE2L2 regulates pentose phosphate pathway genes | 1 | 28.6× | 0.262 | CREBBP |
| NFE2L2 regulating MDR associated enzymes | 1 | 28.6× | 0.262 | CREBBP |
| Regulation of NFE2L2 gene expression | 1 | 28.6× | 0.262 | CREBBP |
| Lipophagy | 1 | 25.4× | 0.262 | PRKAG2 |
| Regulation of CDH11 mRNA translation by microRNAs | 1 | 25.4× | 0.262 | CDH11 |
| Linoleic acid (LA) metabolism | 1 | 22.8× | 0.262 | ELOVL5 |
| Activation of PPARGC1A (PGC-1alpha) by phosphorylation | 1 | 22.8× | 0.262 | PRKAG2 |
| Regulation of FOXO transcriptional activity by acetylation | 1 | 22.8× | 0.262 | CREBBP |
| Regulation of CDH11 function | 1 | 20.8× | 0.262 | CDH11 |
| Regulation of CDH11 gene transcription | 1 | 20.8× | 0.262 | CDH11 |
| Formation of the ureteric bud | 2 | 19.9× | 0.262 | SIX1, FOXC1 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 75 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|
| complement activation | 6 | 49.9× | 1e-06 | CFHR4, CFHR3, CFHR5, CFH, CFHR1, CFHR2 |
| obsolete cytolysis by host of symbiont cells | 3 | 84.3× | 0.002 | CFHR5, CFHR1, CFHR2 |
| regulation of entry of bacterium into host cell | 2 | 89.9× | 0.026 | CAV1, EXOC2 |
| ventricular cardiac muscle tissue morphogenesis | 3 | 28.1× | 0.026 | COL11A1, PTCD2, FOXC1 |
| negative regulation of protein binding | 3 | 25.0× | 0.026 | CFHR5, CFHR1, CFHR2 |
| kidney development | 5 | 9.4× | 0.026 | SIX1, BICC1, PTCD2, FOXC1, PKHD1 |
| regulation of skeletal muscle satellite cell proliferation | 2 | 74.9× | 0.028 | ANGPT1, SIX1 |
| caveola assembly | 2 | 56.2× | 0.046 | CAV1, CAV2 |
| regulation of fatty acid metabolic process | 2 | 49.9× | 0.053 | CAV1, PRKAG2 |
| homeostatic process | 2 | 44.9× | 0.058 | CREBBP, PKHD1 |
| embryonic skeletal system morphogenesis | 3 | 15.7× | 0.058 | SIX1, ZEB1, COL11A1 |
| receptor-mediated endocytosis of virus by host cell | 2 | 40.9× | 0.060 | CAV1, CAV2 |
| response to oxygen radical | 1 | 224.7× | 0.092 | TXNRD2 |
| regulation of mesenchymal cell proliferation | 1 | 224.7× | 0.092 | ZEB1 |
| skeletal muscle hypertrophy | 1 | 224.7× | 0.092 | MYOC |
| negative regulation of skeletal muscle cell proliferation | 1 | 224.7× | 0.092 | CAV2 |
| RNA import into mitochondrion | 1 | 224.7× | 0.092 | PNPT1 |
| negative regulation of asymmetric cell division | 1 | 224.7× | 0.092 | ASPM |
| nuclear polyadenylation-dependent mRNA catabolic process | 1 | 224.7× | 0.092 | PNPT1 |
| glomerular epithelium development | 1 | 224.7× | 0.092 | FOXC1 |
| mesonephric tubule formation | 1 | 224.7× | 0.092 | SIX1 |
| mesenchymal cell proliferation involved in ureter development | 1 | 224.7× | 0.092 | SIX1 |
| cardiac endothelial to mesenchymal transition | 1 | 224.7× | 0.092 | SEMA3C |
| positive regulation of hematopoietic stem cell differentiation | 1 | 224.7× | 0.092 | FOXC1 |
| regulation of cholangiocyte proliferation | 1 | 224.7× | 0.092 | PKHD1 |
| regulation of macrophage migration inhibitory factor signaling pathway | 1 | 224.7× | 0.092 | ANGPT1 |
| mitochondrial RNA 5’-end processing | 1 | 112.3× | 0.092 | PNPT1 |
| regulation of the force of heart contraction by chemical signal | 1 | 112.3× | 0.092 | CAV1 |
| aortic valve formation | 1 | 112.3× | 0.092 | CDH11 |
| apoptotic process involved in outflow tract morphogenesis | 1 | 112.3× | 0.092 | FOXC1 |
Therapeutics
Drugs indicated for this disease
30 approved, 14 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): AMA0076, Betamethasone, Cannabinol, Ciliary Neurotrophic Factor, Cyclosporine, Piclidenoson, Sodium Chloride, Triamcinolone Acetonide, Zinpentraxin Alfa.
Drug target analysis
Approved (phase 4): 3 · Phase ≥3: 4 · Phased (≥1): 6 · Undrugged: 69
Druggability breadth: 28 of 81 evidence-associated genes (35%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|
| CHEK2 | 30 | 4 |
| CFTR | 14 | 4 |
| CREBBP | 13 | 4 |
| TXNRD2 | 3 | 3 |
| PRPF8 | 1 | 2 |
| GMDS | 1 | 2 |
| ARHGEF12 | 0 | 0 |
| ANGPT1 | 0 | 0 |
| GLIS1 | 0 | 0 |
| SEMA3C | 0 | 0 |
Drugs targeting cohort genes (top 30)
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 8.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|
| CHEK2 | 690 | Binding:687, Functional:2, ADMET:1 |
| CREBBP | 687 | Binding:644, Functional:43 |
| CFTR | 520 | Binding:497, Functional:17, ADMET:5, Toxicity:1 |
| TXNRD2 | 91 | Binding:76, Functional:15 |
| MYOF | 14 | Binding:14 |
| SIX1 | 12 | Binding:12 |
| ARHGEF12 | 11 | Binding:11 |
| PRPF8 | 8 | Binding:8 |
| GMDS | 8 | Binding:8 |
| KCNT2 | 7 | Binding:7 |
| CAV1 | 5 | Binding:5 |
| ELOVL5 | 5 | Binding:5 |
| DGKG | 5 | Binding:5 |
| F13B | 3 | Binding:3 |
| TES | 2 | Binding:2 |
| ABCA1 | 2 | Binding:2 |
| ANGPT1 | 1 | Binding:1 |
| PLEKHA1 | 1 | Binding:1 |
| TMCO1 | 1 | Binding:1 |
| PLEKHA7 | 1 | Binding:1 |
| MECOM | 1 | Binding:1 |
| CFH | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|
| CHEK2 | 2.7.11.1 | non-specific serine/threonine protein kinase |
| PLCE1 | 3.1.4.11 | phosphoinositide phospholipase C |
| TXNRD2 | 1.8.1.9 | thioredoxin-disulfide reductase (NADPH) |
| CFTR | 2.7.4.3, 5.6.1.6 | adenylate kinase, channel-conductance-controlling ATPase |
| PNPT1 | 2.7.7.8 | polyribonucleotide nucleotidyltransferase |
| CREBBP | 2.3.1.48 | histone acetyltransferase |
| DGKG | 2.7.1.107 | diacylglycerol kinase (ATP) |
| GMDS | 4.2.1.47 | GDP-mannose 4,6-dehydratase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|
| CHEK2 | 690 |
| CFTR | 520 |
| CREBBP | 687 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 72; with CPIC/DPWG dosing guidelines: 1.
Cohort genes with a CPIC/DPWG dosing guideline
| Symbol | CPIC guidelines |
|---|
| CFTR | 1 |
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|
| NERATINIB | 4 | CHEK2 |
| BOSUTINIB | 4 | CHEK2 |
| BRIGATINIB | 4 | CHEK2 |
| SUNITINIB | 4 | CHEK2 |
| GEFITINIB | 4 | CHEK2 |
| IVACAFTOR | 4 | CFTR |
| LUMACAFTOR | 4 | CFTR |
| TEZACAFTOR | 4 | CFTR |
| ELEXACAFTOR | 4 | CFTR |
| GLYBURIDE | 4 | CFTR |
| COLCHICINE | 4 | CREBBP |
| ALTRETAMINE | 4 | CREBBP |
| FASUDIL | 3 | CHEK2 |
| CEDIRANIB | 3 | CHEK2 |
| DOVITINIB | 3 | CHEK2 |
| LESTAURTINIB | 3 | CHEK2 |
| RUBOXISTAURIN | 3 | CHEK2 |
| CURCUMIN | 3 | CREBBP, TXNRD2 |
| RUTIN | 3 | CFTR |
| BAMOCAFTOR | 3 | CFTR |
| QUERCETIN | 3 | CFTR |
| PAPAVERINE | 3 | CREBBP |
| EPIGALOCATECHIN GALLATE | 3 | CREBBP |
| MOLIBRESIB | 2 | CREBBP, GMDS, PRPF8 |
| DORAMAPIMOD | 2 | CHEK2 |
| FORETINIB | 2 | CHEK2 |
| SU-014813 | 2 | CHEK2 |
| CENISERTIB | 2 | CHEK2 |
| ILORASERTIB | 2 | CHEK2 |
| CEP-11981 | 2 | CHEK2 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|
| A | Approved (phase 4 drug) | 3 | CHEK2, CFTR, CREBBP |
| B | Phased (≥1) drug, not yet approved | 3 | PRPF8, TXNRD2, GMDS |
| C | Druggable family + PDB, no drug | 6 | PLCE1, ABCA1, F13B, CFH, CFHR1, CFHR2 |
| D | Druggable family + AlphaFold only, no drug | 10 | SEMA3C, SEMA3F, CFHR4, CFHR3, KCNT2, ASPM, CFHR5, EXOC2, DGKG, CADM2 |
| E | Difficult family or no structure, no drug | 53 | ARHGEF12, ANGPT1, GLIS1, SIX1, SIX6, SUPT3H, ZEB1, ELP4, PLEKHA1, TES (+43 more) |
Undrugged target profiles
69 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|
| AFAP1 | 0 | GMDS |
| FOXC1 | 0 | GMDS |
| ARHGEF12 | 11 | — |
| ANGPT1 | 1 | — |
| GLIS1 | 0 | — |
| SEMA3C | 0 | — |
| SEMA3F | 0 | — |
| SIX1 | 12 | — |
| SIX6 | 0 | — |
| SUPT3H | 0 | — |
| ZEB1 | 0 | — |
| ELP4 | 0 | — |
| PLEKHA1 | 1 | — |
| TES | 2 | — |
| CAV1 | 5 | — |
| CAV2 | 0 | — |
| ANKH | 0 | — |
| CTTNBP2 | 0 | — |
| FBXO32 | 0 | — |
| CFHR4 | 0 | — |
| CFHR3 | 0 | — |
| TRIOBP | 0 | — |
| PLCE1 | 0 | — |
| CDH11 | 0 | — |
| CDKN2B | 0 | — |
| TMCO1 | 1 | — |
| RBFOX1 | 0 | — |
| FMNL2 | 0 | — |
| KCNT2 | 7 | — |
| ASPM | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 1,034.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|
| Not specified | 701 |
| PHASE4 | 142 |
| PHASE3 | 80 |
| PHASE2 | 48 |
| PHASE1 | 29 |
| PHASE1/PHASE2 | 17 |
| PHASE2/PHASE3 | 9 |
| EARLY_PHASE1 | 8 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|
| NCT04007276 | PHASE4 | NOT_YET_RECRUITING | The Effect of Lumify™ on Ocular Redness, Intraocular Pressure, and Eyelid Position in Glaucoma Patients |
| NCT04957329 | PHASE4 | RECRUITING | Effect of Benzalkonium Chloride Preserved and Preservative-free Latanoprost Eye Drops on Conjunctival Goblet Cells |
| NCT05344274 | PHASE4 | RECRUITING | Retinal Blood Flow and Autoregulation |
| NCT06017362 | PHASE4 | RECRUITING | Clinical Trial to Determine the Efficacy and Safety of Insulin Eye Drops in Dry Eye in Patients with Topical Hypotensors |
| NCT06761313 | PHASE4 | ACTIVE_NOT_RECRUITING | Triplenex (triple Fixed Combination) Use Evaluation in Patients with Glaucoma |
| NCT06792422 | PHASE4 | RECRUITING | A Study Investigating Oral Semaglutide in People with Open-Angle Glaucoma |
| NCT07174401 | PHASE4 | NOT_YET_RECRUITING | Rocklatan Retinal Perfusion OCT Study |
| NCT07209410 | PHASE4 | RECRUITING | Evaluating Injection With the Use of Brimonidine Tartrate Ophthalmic 0.025% on Patients Using Netarsudil 0.02%/Latanoprost 0.005% to Treat Glaucoma |
| NCT07217678 | PHASE4 | RECRUITING | Biomarkers of Ocular Surface Damage in the Setting of Topical Ocular Hypotensive Medication Use |
| NCT07465913 | PHASE4 | RECRUITING | Rocklatan vs Latanoprost Post-DSLT |
| NCT07588152 | PHASE4 | NOT_YET_RECRUITING | Imaging the Effects of Netarsudil (Rhopressa) on the Trabecular Meshwork in Glaucoma and Ocular Hypertension |
| NCT00061503 | PHASE4 | COMPLETED | Mechanism of Action of TRAVATAN 0.004% in Subjects With Glaucoma or Ocular Hypertension |
| NCT00143208 | PHASE4 | COMPLETED | Evaluation Of Intraocular Pressure Lowering-Effect Of Xalacom In Patients With Poag Or Oh. |
| NCT00224289 | PHASE4 | COMPLETED | Effect of Age on Latanoprost 0.005% in Patients With Glaucoma |
| NCT00273221 | PHASE4 | UNKNOWN | Combined Phacotube vs Phacotrabeculectomy:A Randomized Controlled Trial |
| NCT00329095 | PHASE4 | COMPLETED | An Evaluation of Use of Topical Ocular Hypotensive Medication by Compliance |
| NCT00345046 | PHASE4 | COMPLETED | A Comparison of Three Different Formulations of Prednisolone Acetate 1% |
| NCT00346489 | PHASE4 | COMPLETED | Outcomes of Intraoperative 5-Fluorouracil Versus Mitomycin C |
| NCT00347035 | PHASE4 | TERMINATED | INFLUENCE OF TOPICAL INDOMETHACIN ON HYPOTHENSIVE EFFECT OF BRIMONIDINE |
| NCT00347802 | PHASE4 | COMPLETED | Diurnal Curves With Bimatoprost 0.03% Versus Travoprost 0.004% |
| NCT00347841 | PHASE4 | COMPLETED | Efficacy of Bimatoprost 0.03% in Patients Who Are Low-Responders to Latanoprost |
| NCT00348023 | PHASE4 | COMPLETED | Bimatoprost Monotherapy vs. Dual Therapy With Travoprost and Timolol in Patients With Glaucoma and Ocular Hypertension |
| NCT00348062 | PHASE4 | COMPLETED | A Multicenter Evaluation of Methods to Reduce Hyperemia Associated With Bimatoprost Therapy for Glaucoma or Ocular Hypertension |
| NCT00348400 | PHASE4 | COMPLETED | Brimonidine Purite 0.15% Versus Dorzolamide 2% Used as Adjunctive Therapy to Latanoprost |
| NCT00351429 | PHASE4 | COMPLETED | Study of PGA Suture in Ophthalmology |
| NCT00376974 | PHASE4 | UNKNOWN | The Effect of Education on Patient Compliance |
| NCT00379834 | PHASE4 | COMPLETED | 12-Month Stability of Diurnal IOP Control on Cosopt |
| NCT00382226 | PHASE4 | COMPLETED | IOP-Lowering Efficacy of Brinzolamide 1.0% Added to Travoprost 0.004%/Timolol 0.5% Fixed Combination as Adjunctive Therapy |
| NCT00404729 | PHASE4 | COMPLETED | Neural Conduction Along the Visual Pathways After Oral Treatment With Citicoline in Patients With Optic Nerve Diseases |
| NCT00440011 | PHASE4 | COMPLETED | Bimatoprost 0.03% Versus Travoprost 0.004% in Patients Currently on Latanoprost 0.005% |
| NCT00440141 | PHASE4 | COMPLETED | Brimonidine 0.1% Versus Brinzolamide 1% as Adjunctive Therapy to Latanoprost 0.005% |
| NCT00442312 | PHASE4 | UNKNOWN | Combigan Ophthalmic Solution(Brimonidine 0.2% and Timolol 0.5%)With Latanoprost Compared With Latanoprost Monotherapy |
| NCT00444184 | PHASE4 | COMPLETED | 24-hour Intraocular Pressure Control With Travoprost/Timolol Fixed Combination Versus Travoprost |
| NCT00444665 | PHASE4 | COMPLETED | Examining The Efficacy, Safety And Improved Tolerability Of Travoprost BAK Free Ophthalmic Solution (Travatan-Z) Compared To Prior Prostaglandin Therapy |
| NCT00449098 | PHASE4 | UNKNOWN | Ologen (OculusGen)-Glaucoma MMC Control Trial in India |
| NCT00466479 | PHASE4 | COMPLETED | Brimonidine vs ALTP in Progressing Human Glaucoma |
| NCT00468429 | PHASE4 | UNKNOWN | Subconjunctival Bevacizumab to Prevent Bleb Failure After Glaucoma Filtration Surgery |
| NCT00468988 | PHASE4 | COMPLETED | Short Term Comparative Study of Xalatan With Benzalkonium Chloride vs. Travatan Z Without Benzalkonium Chloride in Healthy Volunteers |
| NCT00471380 | PHASE4 | COMPLETED | A Phase IV Study of Travoprost + Brinzolamide to Treat Glaucoma or Ocular Hypertension |
| NCT00485238 | PHASE4 | UNKNOWN | ALPI vs Medical Therapy Effects on Optic Nerve Structure & Function |
Drugs tested across these trials (top 30)
- Cohort genes: ANGPT1, ARHGEF12, PRPF8, GLIS1, SEMA3C, SEMA3F, SIX1, SIX6, SUPT3H, ZEB1, ELP4, PLEKHA1, TES, CAV1, CAV2, ANKH, CTTNBP2, CHEK2, FBXO32, CFHR4, CFHR3, TRIOBP, PLCE1, CDH11, CDKN2B, TXNRD2, TMCO1, RBFOX1, FMNL2, CFTR, KCNT2, ASPM, BICC1, C14orf39, TMEM181, ANTXR1, ELOVL5, POU6F2, COL11A1, THSD7A, PNPT1, CREBBP, AFAP1, CFHR5, ZBTB41, EXOC2, SRBD1, PTCD2, DNAJC24, PLEKHA7, DGKG, ABCA1, TSC22D2, SH2B3, MALAT1, CADM2, EEF2KMT, ARMS2, CDKN2B-AS1, ETS1, MECOM, F13B, MYOF, FOXC1, MIR4776-1, GAS7, GMDS, CFH, CFHR1, CFHR2, CASC20, LMO7, LMX1B, LPP
- Drugs: Timolol, Brimonidine, Latanoprost, Travoprost, Bimatoprost, Brinzolamide, Dorzolamide, Mitomycin, Ranibizumab, Niacinamide, Bevacizumab, Hypromellose, Fluorouracil, Ketorolac, Netarsudil, Tafluprost, Acetazolamide, Pilocarpine, Prednisolone, Rosuvastatin, Triamcinolone Acetonide, Aflibercept, Apraclonidine, Bosentan, Bromfenac, Cenegermin, Chlorpromazine, Fluorometholone