Hereditary spherocytosis
diseaseOn this page
Also known as congenital spherocytic hemolytic anaemiacongenital spherocytosisMinkowski-Chauffard diseasespherocytic anaemia
Summary
Hereditary spherocytosis (MONDO:0019350) is a disease (an umbrella term covering 5 Mondo subtypes) caused by ANK1 (GenCC Definitive), with 7 cohort genes and 3 clinical trials. The dominant Reactome pathway is Interaction between L1 and Ankyrins (3 cohort genes).
At a glance
- Prevalence: 1-5 / 10 000 (Europe) [Orphanet-validated]
- Causal gene: ANK1 (GenCC Definitive)
- Umbrella term: 5 Mondo subtypes
- Cohort genes: 7
- ClinVar variants: 18
- Phenotypes (HPO): 27
- Clinical trials: 3
Clinical features
Epidemiology
Prevalence records
3 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Point prevalence | 1-5 / 10 000 | Europe | Validated | |
| Point prevalence | 1-5 / 10 000 | 50 | Germany | Validated |
| Prevalence at birth | 1-5 / 10 000 | 20 | United States | Validated |
Signs & symptoms
Clinical features (HPO)
27 HPO clinical features (Orphanet curated; top 27 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0005502 | Increased red cell osmotic fragility | Very frequent (80-99%) |
| HP:0000952 | Jaundice | Frequent (30-79%) |
| HP:0000980 | Pallor | Frequent (30-79%) |
| HP:0001081 | Cholelithiasis | Frequent (30-79%) |
| HP:0001324 | Muscle weakness | Frequent (30-79%) |
| HP:0001744 | Splenomegaly | Frequent (30-79%) |
| HP:0001903 | Anemia | Frequent (30-79%) |
| HP:0001923 | Reticulocytosis | Frequent (30-79%) |
| HP:0002240 | Hepatomegaly | Frequent (30-79%) |
| HP:0002904 | Hyperbilirubinemia | Frequent (30-79%) |
| HP:0004444 | Spherocytosis | Frequent (30-79%) |
| HP:0005525 | Spontaneous hemolytic crises | Frequent (30-79%) |
| HP:0011900 | Hypofibrinogenemia | Frequent (30-79%) |
| HP:0025548 | Increased mean corpuscular hemoglobin concentration | Frequent (30-79%) |
| HP:0100724 | Hypercoagulability | Frequent (30-79%) |
| HP:0001251 | Ataxia | Occasional (5-29%) |
| HP:0001723 | Restrictive cardiomyopathy | Occasional (5-29%) |
| HP:0001945 | Fever | Occasional (5-29%) |
| HP:0001978 | Extramedullary hematopoiesis | Occasional (5-29%) |
| HP:0002027 | Abdominal pain | Occasional (5-29%) |
| HP:0003326 | Myalgia | Occasional (5-29%) |
| HP:0025143 | Chills | Occasional (5-29%) |
| HP:0040186 | Maculopapular exanthema | Occasional (5-29%) |
| HP:0001510 | Growth delay | Very rare (<1-4%) |
| HP:0001997 | Gout | Very rare (<1-4%) |
| HP:0003270 | Abdominal distention | Very rare (<1-4%) |
| HP:0200042 | Skin ulcer | Very rare (<1-4%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | hereditary spherocytosis |
| Mondo ID | MONDO:0019350 |
| MeSH | D013103 |
| Orphanet | 822 |
| DOID | DOID:12971 |
| ICD-10-CM | D58.0 |
| ICD-11 | 1305248013 |
| NCIT | C97074 |
| SNOMED CT | 55995005 |
| UMLS | C0037889 |
| MedGen | 52450 |
| GARD | 0006639 |
| MedDRA | 10019904 |
| NORD | 777 |
| Is cancer (heuristic) | no |
Also known as: congenital spherocytic hemolytic anaemia · congenital spherocytosis · hereditary spherocytosis · Minkowski-Chauffard disease · spherocytic anaemia
Data availability: 18 ClinVar variants · 7 GenCC gene-disease records · 33 cell lines.
Disease family
An umbrella term covering 5 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › hematologic disorder › anemia › normocytic anemia › hemolytic anemia › familial hemolytic anemia › hereditary spherocytosis
Related subtypes (22): congenital nonspherocytic hemolytic anemia, elliptocytosis 2, southeast Asian ovalocytosis, overhydrated hereditary stomatocytosis, cryohydrocytosis, dehydrated hereditary stomatocytosis with or without pseudohyperkalemia and/or perinatal edema, abetalipoproteinemia, hemolytic anemia due to diphosphoglycerate mutase deficiency, glycogen storage disease VII, cutaneous porphyria, hereditary cryohydrocytosis with reduced stomatin, familial pseudohyperkalemia, renal tubular acidosis, distal, 4, with hemolytic anemia, elliptocytosis 1, glycogen storage disease due to aldolase A deficiency, primary CD59 deficiency, triosephosphate isomerase deficiency, dehydrated hereditary stomatocytosis 2, Rh deficiency syndrome, congenital dyserythropoietic anemia, X-linked congenital hemolytic anemia, hemolytic disease of fetus and newborn, RH-induced
Subtypes (5): hereditary spherocytosis type 2, hereditary spherocytosis type 1, hereditary spherocytosis type 3, hereditary spherocytosis type 4, hereditary spherocytosis type 5
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
18 retrieved; paginated sample, class counts are floors:
8 uncertain significance, 5 likely pathogenic, 3 pathogenic, 1 pathogenic/likely pathogenic, 1 not provided
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1030630 | NM_003126.4(SPTA1):c.4339-99C>T | SPTA1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 996360 | NM_003126.4(SPTA1):c.6788+11C>T | SPTA1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 522602 | NM_001355436.2(SPTB):c.6095T>C (p.Leu2032Pro) | SPTB | Pathogenic | no assertion criteria provided |
| 624571 | NM_001355436.2(SPTB):c.4063G>T (p.Glu1355Ter) | SPTB | Pathogenic | criteria provided, single submitter |
| 2505368 | NM_000037.4(ANK1):c.1638C>A (p.Tyr546Ter) | ANK1 | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3362889 | NM_000037.4(ANK1):c.3072T>A (p.Tyr1024Ter) | ANK1 | Likely pathogenic | criteria provided, single submitter |
| 2505370 | NM_000175.5(GPI):c.283-2A>G | GPI | Likely pathogenic | criteria provided, single submitter |
| 2505369 | NM_001355436.2(SPTB):c.2163_2164dup (p.Ser722fs) | SPTB | Likely pathogenic | criteria provided, single submitter |
| 523132 | NM_001355436.2(SPTB):c.6194_6195dup (p.Ala2066fs) | SPTB | Likely pathogenic | criteria provided, single submitter |
| 2439043 | NM_000037.4(ANK1):c.3829G>C (p.Val1277Leu) | ANK1 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 2683016 | NM_000037.4(ANK1):c.1054A>G (p.Arg352Gly) | ANK1 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 2749545 | NM_000037.4(ANK1):c.5299G>A (p.Glu1767Lys) | ANK1 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 3779468 | NM_000037.4(ANK1):c.2190G>C (p.Lys730Asn) | ANK1 | Uncertain significance | criteria provided, single submitter |
| 3779469 | NM_000037.4(ANK1):c.2248G>A (p.Val750Met) | ANK1 | Uncertain significance | criteria provided, single submitter |
| 3779473 | NM_000037.4(ANK1):c.2717C>T (p.Ala906Val) | ANK1 | Uncertain significance | criteria provided, single submitter |
| 3779478 | NM_000037.4(ANK1):c.3964C>T (p.Arg1322Cys) | ANK1 | Uncertain significance | criteria provided, single submitter |
| 3893687 | NM_000342.4(SLC4A1):c.1527_1541del (p.Ser510_Arg514del) | SLC4A1 | Uncertain significance | criteria provided, single submitter |
| 1326902 | NM_001355436.2(SPTB):c.4520G>T (p.Gly1507Val) | SPTB | not provided | no classification provided |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 46 · Orphanet: 14 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| ANK1 | Definitive | Autosomal dominant | hereditary spherocytosis | 8 |
| SPTA1 | Definitive | Autosomal recessive | hereditary spherocytosis type 3 | 13 |
| EPB42 | Strong | Autosomal recessive | hereditary spherocytosis type 5 | 3 |
| SLC4A1 | Strong | Autosomal dominant | hereditary spherocytosis type 4 | 15 |
| SPTB | Strong | Autosomal dominant | hereditary spherocytosis type 2 | 7 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| SLC4A1 | Orphanet:3202 | Dehydrated hereditary stomatocytosis |
| SLC4A1 | Orphanet:398088 | Hereditary cryohydrocytosis with normal stomatin |
| SLC4A1 | Orphanet:822 | Hereditary spherocytosis |
| SLC4A1 | Orphanet:93608 | Autosomal dominant distal renal tubular acidosis |
| SLC4A1 | Orphanet:93610 | Distal renal tubular acidosis with anemia |
| SLC4A1 | Orphanet:98868 | Southeast Asian ovalocytosis |
| SPTA1 | Orphanet:288 | Hereditary elliptocytosis |
| SPTA1 | Orphanet:822 | Hereditary spherocytosis |
| SPTB | Orphanet:288 | Hereditary elliptocytosis |
| SPTB | Orphanet:822 | Hereditary spherocytosis |
| ANK1 | Orphanet:251066 | 8p11.2 deletion syndrome |
| ANK1 | Orphanet:822 | Hereditary spherocytosis |
| EPB42 | Orphanet:822 | Hereditary spherocytosis |
| GPI | Orphanet:712 | Hemolytic anemia due to glucophosphate isomerase deficiency |
Cohort genes → proteins
7 cohort genes, 7 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 7 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| SLC4A1 | HGNC:11027 | ENSG00000004939 | P02730 | Band 3 anion transport protein | gencc,clinvar |
| SPTA1 | HGNC:11272 | ENSG00000163554 | P02549 | Spectrin alpha chain, erythrocytic 1 | gencc,clinvar |
| SPTB | HGNC:11274 | ENSG00000070182 | P11277 | Spectrin beta chain, erythrocytic | gencc,clinvar |
| ANK1 | HGNC:492 | ENSG00000029534 | P16157 | Ankyrin-1 | gencc,clinvar |
| EPB42 | HGNC:3381 | ENSG00000166947 | P16452 | Protein 4.2 | gencc |
| GNPDA1 | HGNC:4417 | ENSG00000113552 | P46926 | Glucosamine-6-phosphate deaminase 1 | clinvar |
| GPI | HGNC:4458 | ENSG00000105220 | P06744 | Glucose-6-phosphate isomerase | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| SLC4A1 | Band 3 anion transport protein | Functions both as a transporter that mediates electroneutral anion exchange across the cell membrane and as a structural protein. |
| SPTA1 | Spectrin alpha chain, erythrocytic 1 | Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. |
| SPTB | Spectrin beta chain, erythrocytic | Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. |
| ANK1 | Ankyrin-1 | Component of the ankyrin-1 complex, a multiprotein complex involved in the stability and shape of the erythrocyte membrane. |
| EPB42 | Protein 4.2 | Component of the ankyrin-1 complex, a multiprotein complex involved in the stability and shape of the erythrocyte membrane. |
| GNPDA1 | Glucosamine-6-phosphate deaminase 1 | Catalyzes the reversible conversion of alpha-D-glucosamine 6-phosphate (GlcN-6P) into beta-D-fructose 6-phosphate (Fru-6P) and ammonium ion, a regulatory reaction step in de novo uridine diphosphate-N-acetyl-alpha-D-glucosamine (UDP-GlcNAc… |
| GPI | Glucose-6-phosphate isomerase | Isomerase that catalyzes the conversion of alpha-D-glucose-6-phosphate to beta-D-fructose-6-phosphate, the second step in glycolysis, and the reverse reaction in gluconeogenesis, within the cytoplasm. |
Protein-family classification
Druggable: 3 · Difficult: 2 · Unknown: 2 · Druggable fraction: 0.43
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Scaffold/PPI | 2 | 4.9× | 0.220 |
| Enzyme (other) | 2 | 3.4× | 0.220 |
| Antibody/Immunoglobulin | 1 | 4.2× | 0.289 |
| Other/Unknown | 2 | 0.5× | 0.968 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| SLC4A1 | Other/Unknown | no | Anion_exchange, Anion_exchange_1, HCO3_transpt_euk | |
| SPTA1 | Scaffold/PPI | no | SH3_domain, Spectrin_repeat, EF_hand_dom | |
| SPTB | Other/Unknown | no | Actinin_actin-bd_CS, CH_dom, Spectrin_repeat | |
| ANK1 | Scaffold/PPI | no | Death_dom, ZU5_dom, Ankyrin_rpt | |
| EPB42 | Antibody/Immunoglobulin | yes | 2.3.2.13 | Transglutaminase_N, Transglutaminase-like, Transglutaminase_C |
| GNPDA1 | Enzyme (other) | yes | 3.5.99.6 | Glucosamine6P_isomerase, Glc/Gal-6P_isomerase, Glucosamine6P_isomerase_CS |
| GPI | Enzyme (other) | yes | 5.3.1.9 | G6P_Isomerase, Phosphoglucose_isomerase_CS, G6P_Isomerase_C |
Expression context
Cohort genes with no expression data: 0.
7 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 7 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| bone marrow | 3 |
| bone marrow cell | 3 |
| trabecular bone tissue | 2 |
| gastrocnemius | 1 |
| hindlimb stylopod muscle | 1 |
| muscle of leg | 1 |
| body of tongue | 1 |
| skeletal muscle tissue of rectus abdominis | 1 |
| triceps brachii | 1 |
| blood | 1 |
| adult organism | 1 |
| nephron tubule | 1 |
| type B pancreatic cell | 1 |
| apex of heart | 1 |
| right adrenal gland | 1 |
| right adrenal gland cortex | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| SLC4A1 | 161 | tissue_specific | marker | trabecular bone tissue, bone marrow, bone marrow cell |
| SPTA1 | 147 | tissue_specific | marker | trabecular bone tissue, bone marrow, bone marrow cell |
| SPTB | 220 | broad | marker | gastrocnemius, hindlimb stylopod muscle, muscle of leg |
| ANK1 | 226 | broad | marker | skeletal muscle tissue of rectus abdominis, triceps brachii, body of tongue |
| EPB42 | 91 | tissue_specific | marker | blood, bone marrow, bone marrow cell |
| GNPDA1 | 298 | ubiquitous | marker | type B pancreatic cell, nephron tubule, adult organism |
| GPI | 286 | ubiquitous | marker | apex of heart, right adrenal gland, right adrenal gland cortex |
Protein interactions among cohort
Intra-cohort edges: 10.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| ANK1 | 5,705 |
| GPI | 4,709 |
| GNPDA1 | 1,687 |
| SLC4A1 | 1,598 |
| SPTA1 | 1,551 |
| SPTB | 1,079 |
| EPB42 | 923 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ANK1 | EPB42 | string_interaction |
| ANK1 | SLC4A1 | biogrid_interaction, intact, string_interaction |
| ANK1 | SPTA1 | biogrid_interaction, string_interaction |
| ANK1 | SPTB | biogrid_interaction, string_interaction |
| EPB42 | SLC4A1 | biogrid_interaction, intact, string_interaction |
| EPB42 | SPTA1 | string_interaction |
| GNPDA1 | GPI | string_interaction |
| SLC4A1 | SPTA1 | intact, string_interaction |
| SLC4A1 | SPTB | intact |
| SPTA1 | SPTB | intact, string_interaction |
Structural data
PDB: 7 · AlphaFold-only: 0 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| SLC4A1 | P02730 | 54 |
| ANK1 | P16157 | 21 |
| EPB42 | P16452 | 13 |
| GPI | P06744 | 13 |
| SPTB | P11277 | 6 |
| SPTA1 | P02549 | 3 |
| GNPDA1 | P46926 | 1 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 36. Enrichment computed across 7 evidence-associated genes (6 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 6 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Interaction between L1 and Ankyrins | 3 | 184.2× | 1e-05 | SPTA1, SPTB, ANK1 |
| ER to Golgi Anterograde Transport | 3 | 66.4× | 1e-04 | SPTA1, SPTB, ANK1 |
| L1CAM interactions | 3 | 60.1× | 1e-04 | SPTA1, SPTB, ANK1 |
| COPI-mediated anterograde transport | 3 | 54.9× | 1e-04 | SPTA1, SPTB, ANK1 |
| Transport to the Golgi and subsequent modification | 3 | 51.4× | 1e-04 | SPTA1, SPTB, ANK1 |
| Asparagine N-linked glycosylation | 3 | 30.1× | 5e-04 | SPTA1, SPTB, ANK1 |
| Glycolysis | 2 | 95.2× | 8e-04 | GNPDA1, GPI |
| NCAM signaling for neurite out-growth | 2 | 90.6× | 8e-04 | SPTA1, SPTB |
| Axon guidance | 3 | 22.6× | 8e-04 | SPTA1, SPTB, ANK1 |
| Nervous system development | 3 | 21.5× | 9e-04 | SPTA1, SPTB, ANK1 |
| Membrane Trafficking | 3 | 18.5× | 0.001 | SPTA1, SPTB, ANK1 |
| Vesicle-mediated transport | 3 | 17.4× | 0.001 | SPTA1, SPTB, ANK1 |
| Defective SLC4A1 causes hereditary spherocytosis type 4 (HSP4), distal renal tubular acidosis (dRTA) and dRTA with hemolytic anemia (dRTA-HA) | 1 | 1903.3× | 0.001 | SLC4A1 |
| MAPK1/MAPK3 signaling | 2 | 43.8× | 0.002 | SPTA1, SPTB |
| MAPK family signaling cascades | 2 | 34.3× | 0.003 | SPTA1, SPTB |
| Post-translational protein modification | 3 | 9.6× | 0.006 | SPTA1, SPTB, ANK1 |
| NrCAM interactions | 1 | 271.9× | 0.008 | ANK1 |
| RAF/MAP kinase cascade | 2 | 20.4× | 0.008 | SPTA1, SPTB |
| Neurofascin interactions | 1 | 237.9× | 0.008 | ANK1 |
| Erythrocytes take up oxygen and release carbon dioxide | 1 | 211.5× | 0.008 | SLC4A1 |
| O2/CO2 exchange in erythrocytes | 1 | 211.5× | 0.008 | SLC4A1 |
| CHL1 interactions | 1 | 211.5× | 0.008 | ANK1 |
| Bicarbonate transporters | 1 | 190.3× | 0.008 | SLC4A1 |
| Developmental Biology | 3 | 7.2× | 0.008 | SPTA1, SPTB, ANK1 |
| Erythrocytes take up carbon dioxide and release oxygen | 1 | 146.4× | 0.010 | SLC4A1 |
| Metabolism of proteins | 3 | 6.2× | 0.012 | SPTA1, SPTB, ANK1 |
| Gluconeogenesis | 1 | 73.2× | 0.018 | GPI |
| SLC transporter disorders | 1 | 34.0× | 0.037 | SLC4A1 |
| Disorders of transmembrane transporters | 1 | 23.2× | 0.053 | SLC4A1 |
| R-HSA-425393 | 1 | 21.6× | 0.053 | SLC4A1 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 7 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| negative regulation of glycolytic process through fructose-6-phosphate | 2 | 802.5× | 1e-04 | SLC4A1, GPI |
| actin filament capping | 2 | 437.7× | 3e-04 | SPTA1, SPTB |
| response to increased oxygen levels | 1 | 2407.4× | 0.007 | SLC4A1 |
| pH elevation | 1 | 2407.4× | 0.007 | SLC4A1 |
| D-glucosamine catabolic process | 1 | 802.5× | 0.009 | GNPDA1 |
| porphyrin-containing compound biosynthetic process | 1 | 601.9× | 0.009 | SPTA1 |
| intracellular monoatomic ion homeostasis | 1 | 601.9× | 0.009 | SLC4A1 |
| hemoglobin metabolic process | 1 | 601.9× | 0.009 | EPB42 |
| negative regulation of urine volume | 1 | 601.9× | 0.009 | SLC4A1 |
| carbohydrate metabolic process | 2 | 38.8× | 0.009 | GNPDA1, GPI |
| regulation of cell shape | 2 | 35.1× | 0.009 | SPTA1, EPB42 |
| protein localization to plasma membrane | 2 | 31.1× | 0.009 | SLC4A1, ANK1 |
| N-acetylglucosamine catabolic process | 1 | 481.5× | 0.010 | GNPDA1 |
| N-acetylneuraminate catabolic process | 1 | 343.9× | 0.012 | GNPDA1 |
| maintenance of epithelial cell apical/basal polarity | 1 | 343.9× | 0.012 | ANK1 |
| actin cytoskeleton organization | 2 | 22.6× | 0.013 | SPTA1, SPTB |
| lymphocyte homeostasis | 1 | 267.5× | 0.014 | SPTA1 |
| hemostasis | 1 | 240.7× | 0.014 | GPI |
| UDP-N-acetylglucosamine biosynthetic process | 1 | 218.9× | 0.014 | GNPDA1 |
| plasma membrane phospholipid scrambling | 1 | 218.9× | 0.014 | SLC4A1 |
| monoatomic anion transport | 1 | 200.6× | 0.014 | SLC4A1 |
| modification of postsynaptic actin cytoskeleton | 1 | 200.6× | 0.014 | SPTB |
| erythrocyte homeostasis | 1 | 185.2× | 0.014 | GPI |
| glucose 6-phosphate metabolic process | 1 | 185.2× | 0.014 | GPI |
| fructose 6-phosphate metabolic process | 1 | 160.5× | 0.016 | GPI |
| plasma membrane organization | 1 | 126.7× | 0.019 | SPTA1 |
| erythrocyte maturation | 1 | 120.4× | 0.019 | EPB42 |
| bicarbonate transport | 1 | 114.6× | 0.019 | SLC4A1 |
| response to muscle stretch | 1 | 109.4× | 0.019 | GPI |
| response to immobilization stress | 1 | 104.7× | 0.019 | GPI |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 7
Druggability breadth: 2 of 7 evidence-associated genes (29%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| SLC4A1 | 0 | 0 |
| SPTA1 | 0 | 0 |
| SPTB | 0 | 0 |
| ANK1 | 0 | 0 |
| EPB42 | 0 | 0 |
| GNPDA1 | 0 | 0 |
| GPI | 0 | 0 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 3.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| GPI | 2 | Binding:2 |
| GNPDA1 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| EPB42 | 2.3.2.13 | protein-glutamine gamma-glutamyltransferase |
| GNPDA1 | 3.5.99.6 | glucosamine-6-phosphate deaminase |
| GPI | 5.3.1.9 | glucose-6-phosphate isomerase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 7; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 3 | EPB42, GNPDA1, GPI |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 4 | SLC4A1, SPTA1, SPTB, ANK1 |
Undrugged target profiles
7 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| SLC4A1 | 0 | — |
| SPTA1 | 0 | — |
| SPTB | 0 | — |
| ANK1 | 0 | — |
| EPB42 | 0 | — |
| GNPDA1 | 1 | — |
| GPI | 2 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 3.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 3 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT01141621 | Not specified | TERMINATED | The Dallas Hereditary Spherocytosis Cohort Study |
| NCT01276561 | Not specified | WITHDRAWN | Single Incision Versus Standard Laparoscopic Splenectomy |
| NCT04451785 | Not specified | COMPLETED | Hereditary Spherocytosis and Vascular Function |