Hereditary spherocytosis

disease
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Also known as congenital spherocytic hemolytic anaemiacongenital spherocytosisMinkowski-Chauffard diseasespherocytic anaemia

Summary

Hereditary spherocytosis (MONDO:0019350) is a disease (an umbrella term covering 5 Mondo subtypes) caused by ANK1 (GenCC Definitive), with 7 cohort genes and 3 clinical trials. The dominant Reactome pathway is Interaction between L1 and Ankyrins (3 cohort genes).

At a glance

  • Prevalence: 1-5 / 10 000 (Europe) [Orphanet-validated]
  • Causal gene: ANK1 (GenCC Definitive)
  • Umbrella term: 5 Mondo subtypes
  • Cohort genes: 7
  • ClinVar variants: 18
  • Phenotypes (HPO): 27
  • Clinical trials: 3

Clinical features

Epidemiology

Prevalence records

3 prevalence record(s), Orphanet:

TypeClassValueGeographyValidation
Point prevalence1-5 / 10 000EuropeValidated
Point prevalence1-5 / 10 00050GermanyValidated
Prevalence at birth1-5 / 10 00020United StatesValidated

Signs & symptoms

Clinical features (HPO)

27 HPO clinical features (Orphanet curated; top 27 by frequency):

HPO IDTermFrequency
HP:0005502Increased red cell osmotic fragilityVery frequent (80-99%)
HP:0000952JaundiceFrequent (30-79%)
HP:0000980PallorFrequent (30-79%)
HP:0001081CholelithiasisFrequent (30-79%)
HP:0001324Muscle weaknessFrequent (30-79%)
HP:0001744SplenomegalyFrequent (30-79%)
HP:0001903AnemiaFrequent (30-79%)
HP:0001923ReticulocytosisFrequent (30-79%)
HP:0002240HepatomegalyFrequent (30-79%)
HP:0002904HyperbilirubinemiaFrequent (30-79%)
HP:0004444SpherocytosisFrequent (30-79%)
HP:0005525Spontaneous hemolytic crisesFrequent (30-79%)
HP:0011900HypofibrinogenemiaFrequent (30-79%)
HP:0025548Increased mean corpuscular hemoglobin concentrationFrequent (30-79%)
HP:0100724HypercoagulabilityFrequent (30-79%)
HP:0001251AtaxiaOccasional (5-29%)
HP:0001723Restrictive cardiomyopathyOccasional (5-29%)
HP:0001945FeverOccasional (5-29%)
HP:0001978Extramedullary hematopoiesisOccasional (5-29%)
HP:0002027Abdominal painOccasional (5-29%)
HP:0003326MyalgiaOccasional (5-29%)
HP:0025143ChillsOccasional (5-29%)
HP:0040186Maculopapular exanthemaOccasional (5-29%)
HP:0001510Growth delayVery rare (<1-4%)
HP:0001997GoutVery rare (<1-4%)
HP:0003270Abdominal distentionVery rare (<1-4%)
HP:0200042Skin ulcerVery rare (<1-4%)

Identifiers

Disease identifiers

FieldValue
Canonical namehereditary spherocytosis
Mondo IDMONDO:0019350
MeSHD013103
Orphanet822
DOIDDOID:12971
ICD-10-CMD58.0
ICD-111305248013
NCITC97074
SNOMED CT55995005
UMLSC0037889
MedGen52450
GARD0006639
MedDRA10019904
NORD777
Is cancer (heuristic)no

Also known as: congenital spherocytic hemolytic anaemia · congenital spherocytosis · hereditary spherocytosis · Minkowski-Chauffard disease · spherocytic anaemia

Data availability: 18 ClinVar variants · 7 GenCC gene-disease records · 33 cell lines.

Disease family

An umbrella term covering 5 Mondo subtypes.

Classification path: disease › human disease › disease by body system or component › hematologic disorderanemianormocytic anemiahemolytic anemiafamilial hemolytic anemiahereditary spherocytosis

Related subtypes (22): congenital nonspherocytic hemolytic anemia, elliptocytosis 2, southeast Asian ovalocytosis, overhydrated hereditary stomatocytosis, cryohydrocytosis, dehydrated hereditary stomatocytosis with or without pseudohyperkalemia and/or perinatal edema, abetalipoproteinemia, hemolytic anemia due to diphosphoglycerate mutase deficiency, glycogen storage disease VII, cutaneous porphyria, hereditary cryohydrocytosis with reduced stomatin, familial pseudohyperkalemia, renal tubular acidosis, distal, 4, with hemolytic anemia, elliptocytosis 1, glycogen storage disease due to aldolase A deficiency, primary CD59 deficiency, triosephosphate isomerase deficiency, dehydrated hereditary stomatocytosis 2, Rh deficiency syndrome, congenital dyserythropoietic anemia, X-linked congenital hemolytic anemia, hemolytic disease of fetus and newborn, RH-induced

Subtypes (5): hereditary spherocytosis type 2, hereditary spherocytosis type 1, hereditary spherocytosis type 3, hereditary spherocytosis type 4, hereditary spherocytosis type 5

Genetics & variants

GWAS landscape

No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.

Variant details and genetic-evidence tiers

ClinVar germline variants

18 retrieved; paginated sample, class counts are floors:

8 uncertain significance, 5 likely pathogenic, 3 pathogenic, 1 pathogenic/likely pathogenic, 1 not provided

ClinVarVariant (HGVS)GeneClassificationReview
1030630NM_003126.4(SPTA1):c.4339-99C>TSPTA1Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
996360NM_003126.4(SPTA1):c.6788+11C>TSPTA1Pathogeniccriteria provided, multiple submitters, no conflicts
522602NM_001355436.2(SPTB):c.6095T>C (p.Leu2032Pro)SPTBPathogenicno assertion criteria provided
624571NM_001355436.2(SPTB):c.4063G>T (p.Glu1355Ter)SPTBPathogeniccriteria provided, single submitter
2505368NM_000037.4(ANK1):c.1638C>A (p.Tyr546Ter)ANK1Likely pathogeniccriteria provided, multiple submitters, no conflicts
3362889NM_000037.4(ANK1):c.3072T>A (p.Tyr1024Ter)ANK1Likely pathogeniccriteria provided, single submitter
2505370NM_000175.5(GPI):c.283-2A>GGPILikely pathogeniccriteria provided, single submitter
2505369NM_001355436.2(SPTB):c.2163_2164dup (p.Ser722fs)SPTBLikely pathogeniccriteria provided, single submitter
523132NM_001355436.2(SPTB):c.6194_6195dup (p.Ala2066fs)SPTBLikely pathogeniccriteria provided, single submitter
2439043NM_000037.4(ANK1):c.3829G>C (p.Val1277Leu)ANK1Uncertain significancecriteria provided, multiple submitters, no conflicts
2683016NM_000037.4(ANK1):c.1054A>G (p.Arg352Gly)ANK1Uncertain significancecriteria provided, multiple submitters, no conflicts
2749545NM_000037.4(ANK1):c.5299G>A (p.Glu1767Lys)ANK1Uncertain significancecriteria provided, multiple submitters, no conflicts
3779468NM_000037.4(ANK1):c.2190G>C (p.Lys730Asn)ANK1Uncertain significancecriteria provided, single submitter
3779469NM_000037.4(ANK1):c.2248G>A (p.Val750Met)ANK1Uncertain significancecriteria provided, single submitter
3779473NM_000037.4(ANK1):c.2717C>T (p.Ala906Val)ANK1Uncertain significancecriteria provided, single submitter
3779478NM_000037.4(ANK1):c.3964C>T (p.Arg1322Cys)ANK1Uncertain significancecriteria provided, single submitter
3893687NM_000342.4(SLC4A1):c.1527_1541del (p.Ser510_Arg514del)SLC4A1Uncertain significancecriteria provided, single submitter
1326902NM_001355436.2(SPTB):c.4520G>T (p.Gly1507Val)SPTBnot providedno classification provided

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 46 · Orphanet: 14 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0

GenCC gene–disease validity (cohort genes)

the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.

GeneClassificationInheritanceDiseaseRecords
ANK1DefinitiveAutosomal dominanthereditary spherocytosis8
SPTA1DefinitiveAutosomal recessivehereditary spherocytosis type 313
EPB42StrongAutosomal recessivehereditary spherocytosis type 53
SLC4A1StrongAutosomal dominanthereditary spherocytosis type 415
SPTBStrongAutosomal dominanthereditary spherocytosis type 27

Orphanet rare-disease linkage (cohort genes)

GeneOrphanet IDRare disease
SLC4A1Orphanet:3202Dehydrated hereditary stomatocytosis
SLC4A1Orphanet:398088Hereditary cryohydrocytosis with normal stomatin
SLC4A1Orphanet:822Hereditary spherocytosis
SLC4A1Orphanet:93608Autosomal dominant distal renal tubular acidosis
SLC4A1Orphanet:93610Distal renal tubular acidosis with anemia
SLC4A1Orphanet:98868Southeast Asian ovalocytosis
SPTA1Orphanet:288Hereditary elliptocytosis
SPTA1Orphanet:822Hereditary spherocytosis
SPTBOrphanet:288Hereditary elliptocytosis
SPTBOrphanet:822Hereditary spherocytosis
ANK1Orphanet:2510668p11.2 deletion syndrome
ANK1Orphanet:822Hereditary spherocytosis
EPB42Orphanet:822Hereditary spherocytosis
GPIOrphanet:712Hemolytic anemia due to glucophosphate isomerase deficiency

Cohort genes → proteins

7 cohort genes, 7 distinct canonical proteins.

Evidence partition

SubsetGenes
multi_evidence7

Cohort genes (full)

SymbolHGNCEnsemblUniProtNameEvidence
SLC4A1HGNC:11027ENSG00000004939P02730Band 3 anion transport proteingencc,clinvar
SPTA1HGNC:11272ENSG00000163554P02549Spectrin alpha chain, erythrocytic 1gencc,clinvar
SPTBHGNC:11274ENSG00000070182P11277Spectrin beta chain, erythrocyticgencc,clinvar
ANK1HGNC:492ENSG00000029534P16157Ankyrin-1gencc,clinvar
EPB42HGNC:3381ENSG00000166947P16452Protein 4.2gencc
GNPDA1HGNC:4417ENSG00000113552P46926Glucosamine-6-phosphate deaminase 1clinvar
GPIHGNC:4458ENSG00000105220P06744Glucose-6-phosphate isomeraseclinvar

Cohort function summary

Lead sentence per gene, UniProt-curated.

SymbolProtein nameFunction (lead sentence)
SLC4A1Band 3 anion transport proteinFunctions both as a transporter that mediates electroneutral anion exchange across the cell membrane and as a structural protein.
SPTA1Spectrin alpha chain, erythrocytic 1Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane.
SPTBSpectrin beta chain, erythrocyticSpectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane.
ANK1Ankyrin-1Component of the ankyrin-1 complex, a multiprotein complex involved in the stability and shape of the erythrocyte membrane.
EPB42Protein 4.2Component of the ankyrin-1 complex, a multiprotein complex involved in the stability and shape of the erythrocyte membrane.
GNPDA1Glucosamine-6-phosphate deaminase 1Catalyzes the reversible conversion of alpha-D-glucosamine 6-phosphate (GlcN-6P) into beta-D-fructose 6-phosphate (Fru-6P) and ammonium ion, a regulatory reaction step in de novo uridine diphosphate-N-acetyl-alpha-D-glucosamine (UDP-GlcNAc…
GPIGlucose-6-phosphate isomeraseIsomerase that catalyzes the conversion of alpha-D-glucose-6-phosphate to beta-D-fructose-6-phosphate, the second step in glycolysis, and the reverse reaction in gluconeogenesis, within the cytoplasm.

Protein-family classification

Druggable: 3 · Difficult: 2 · Unknown: 2 · Druggable fraction: 0.43

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

FamilyGenesFoldFDR
Scaffold/PPI24.9×0.220
Enzyme (other)23.4×0.220
Antibody/Immunoglobulin14.2×0.289
Other/Unknown20.5×0.968

Per-gene assignment

SymbolFamilyDruggable?ECInterPro (top 3)
SLC4A1Other/UnknownnoAnion_exchange, Anion_exchange_1, HCO3_transpt_euk
SPTA1Scaffold/PPInoSH3_domain, Spectrin_repeat, EF_hand_dom
SPTBOther/UnknownnoActinin_actin-bd_CS, CH_dom, Spectrin_repeat
ANK1Scaffold/PPInoDeath_dom, ZU5_dom, Ankyrin_rpt
EPB42Antibody/Immunoglobulinyes2.3.2.13Transglutaminase_N, Transglutaminase-like, Transglutaminase_C
GNPDA1Enzyme (other)yes3.5.99.6Glucosamine6P_isomerase, Glc/Gal-6P_isomerase, Glucosamine6P_isomerase_CS
GPIEnzyme (other)yes5.3.1.9G6P_Isomerase, Phosphoglucose_isomerase_CS, G6P_Isomerase_C

Expression context

Cohort genes with no expression data: 0.

7 cohort genes are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

BucketGenes
narrow (1-5 tissues)0
moderate (6-20)0
broad (>20)7
unknown0

Top tissues across cohort

TissueCohort genes
bone marrow3
bone marrow cell3
trabecular bone tissue2
gastrocnemius1
hindlimb stylopod muscle1
muscle of leg1
body of tongue1
skeletal muscle tissue of rectus abdominis1
triceps brachii1
blood1
adult organism1
nephron tubule1
type B pancreatic cell1
apex of heart1
right adrenal gland1
right adrenal gland cortex1

Per-gene tissue summary (top 30)

SymbolBgee breadthFANTOM5 breadthSCXATop tissues
SLC4A1161tissue_specificmarkertrabecular bone tissue, bone marrow, bone marrow cell
SPTA1147tissue_specificmarkertrabecular bone tissue, bone marrow, bone marrow cell
SPTB220broadmarkergastrocnemius, hindlimb stylopod muscle, muscle of leg
ANK1226broadmarkerskeletal muscle tissue of rectus abdominis, triceps brachii, body of tongue
EPB4291tissue_specificmarkerblood, bone marrow, bone marrow cell
GNPDA1298ubiquitousmarkertype B pancreatic cell, nephron tubule, adult organism
GPI286ubiquitousmarkerapex of heart, right adrenal gland, right adrenal gland cortex

Protein interactions among cohort

Intra-cohort edges: 10.

Hub genes (top 10 by interactor count)

SymbolInteractor count
ANK15,705
GPI4,709
GNPDA11,687
SLC4A11,598
SPTA11,551
SPTB1,079
EPB42923

Intra-cohort edges

ABSources
ANK1EPB42string_interaction
ANK1SLC4A1biogrid_interaction, intact, string_interaction
ANK1SPTA1biogrid_interaction, string_interaction
ANK1SPTBbiogrid_interaction, string_interaction
EPB42SLC4A1biogrid_interaction, intact, string_interaction
EPB42SPTA1string_interaction
GNPDA1GPIstring_interaction
SLC4A1SPTA1intact, string_interaction
SLC4A1SPTBintact
SPTA1SPTBintact, string_interaction

Structural data

PDB: 7 · AlphaFold-only: 0 · No structure: 0

Cohort genes with PDB structures (top 30)

SymbolUniProtPDB entries
SLC4A1P0273054
ANK1P1615721
EPB42P1645213
GPIP0674413
SPTBP112776
SPTA1P025493
GNPDA1P469261

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 36. Enrichment computed across 7 evidence-associated genes (6 with Reactome annotation).

Pathways by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 6 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

PathwayCohort genesFoldFDRSample cohort genes
Interaction between L1 and Ankyrins3184.2×1e-05SPTA1, SPTB, ANK1
ER to Golgi Anterograde Transport366.4×1e-04SPTA1, SPTB, ANK1
L1CAM interactions360.1×1e-04SPTA1, SPTB, ANK1
COPI-mediated anterograde transport354.9×1e-04SPTA1, SPTB, ANK1
Transport to the Golgi and subsequent modification351.4×1e-04SPTA1, SPTB, ANK1
Asparagine N-linked glycosylation330.1×5e-04SPTA1, SPTB, ANK1
Glycolysis295.2×8e-04GNPDA1, GPI
NCAM signaling for neurite out-growth290.6×8e-04SPTA1, SPTB
Axon guidance322.6×8e-04SPTA1, SPTB, ANK1
Nervous system development321.5×9e-04SPTA1, SPTB, ANK1
Membrane Trafficking318.5×0.001SPTA1, SPTB, ANK1
Vesicle-mediated transport317.4×0.001SPTA1, SPTB, ANK1
Defective SLC4A1 causes hereditary spherocytosis type 4 (HSP4), distal renal tubular acidosis (dRTA) and dRTA with hemolytic anemia (dRTA-HA)11903.3×0.001SLC4A1
MAPK1/MAPK3 signaling243.8×0.002SPTA1, SPTB
MAPK family signaling cascades234.3×0.003SPTA1, SPTB
Post-translational protein modification39.6×0.006SPTA1, SPTB, ANK1
NrCAM interactions1271.9×0.008ANK1
RAF/MAP kinase cascade220.4×0.008SPTA1, SPTB
Neurofascin interactions1237.9×0.008ANK1
Erythrocytes take up oxygen and release carbon dioxide1211.5×0.008SLC4A1
O2/CO2 exchange in erythrocytes1211.5×0.008SLC4A1
CHL1 interactions1211.5×0.008ANK1
Bicarbonate transporters1190.3×0.008SLC4A1
Developmental Biology37.2×0.008SPTA1, SPTB, ANK1
Erythrocytes take up carbon dioxide and release oxygen1146.4×0.010SLC4A1
Metabolism of proteins36.2×0.012SPTA1, SPTB, ANK1
Gluconeogenesis173.2×0.018GPI
SLC transporter disorders134.0×0.037SLC4A1
Disorders of transmembrane transporters123.2×0.053SLC4A1
R-HSA-425393121.6×0.053SLC4A1

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 7 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO termCohort genesFoldFDRSample cohort genes
negative regulation of glycolytic process through fructose-6-phosphate2802.5×1e-04SLC4A1, GPI
actin filament capping2437.7×3e-04SPTA1, SPTB
response to increased oxygen levels12407.4×0.007SLC4A1
pH elevation12407.4×0.007SLC4A1
D-glucosamine catabolic process1802.5×0.009GNPDA1
porphyrin-containing compound biosynthetic process1601.9×0.009SPTA1
intracellular monoatomic ion homeostasis1601.9×0.009SLC4A1
hemoglobin metabolic process1601.9×0.009EPB42
negative regulation of urine volume1601.9×0.009SLC4A1
carbohydrate metabolic process238.8×0.009GNPDA1, GPI
regulation of cell shape235.1×0.009SPTA1, EPB42
protein localization to plasma membrane231.1×0.009SLC4A1, ANK1
N-acetylglucosamine catabolic process1481.5×0.010GNPDA1
N-acetylneuraminate catabolic process1343.9×0.012GNPDA1
maintenance of epithelial cell apical/basal polarity1343.9×0.012ANK1
actin cytoskeleton organization222.6×0.013SPTA1, SPTB
lymphocyte homeostasis1267.5×0.014SPTA1
hemostasis1240.7×0.014GPI
UDP-N-acetylglucosamine biosynthetic process1218.9×0.014GNPDA1
plasma membrane phospholipid scrambling1218.9×0.014SLC4A1
monoatomic anion transport1200.6×0.014SLC4A1
modification of postsynaptic actin cytoskeleton1200.6×0.014SPTB
erythrocyte homeostasis1185.2×0.014GPI
glucose 6-phosphate metabolic process1185.2×0.014GPI
fructose 6-phosphate metabolic process1160.5×0.016GPI
plasma membrane organization1126.7×0.019SPTA1
erythrocyte maturation1120.4×0.019EPB42
bicarbonate transport1114.6×0.019SLC4A1
response to muscle stretch1109.4×0.019GPI
response to immobilization stress1104.7×0.019GPI

Therapeutics

Drug target analysis

Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 7

Druggability breadth: 2 of 7 evidence-associated genes (29%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Top cohort targets by molecule count

SymbolMoleculesMax phase
SLC4A100
SPTA100
SPTB00
ANK100
EPB4200
GNPDA100
GPI00

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 3.

Cohort genes with ChEMBL bioactivity (full, sorted by assay count)

SymbolAssaysType breakdown
GPI2Binding:2
GNPDA11Binding:1

Cohort enzymes (BRENDA EC)

SymbolEC numbersNames
EPB422.3.2.13protein-glutamine gamma-glutamyltransferase
GNPDA13.5.99.6glucosamine-6-phosphate deaminase
GPI5.3.1.9glucose-6-phosphate isomerase

Pharmacogenomics

Cohort genes with a PharmGKB record: 7; with CPIC/DPWG dosing guidelines: 0.

No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).

Chemical tractability of cohort targets

0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

TierDefinitionGenesSymbols
AApproved (phase 4 drug)0
BPhased (≥1) drug, not yet approved0
CDruggable family + PDB, no drug3EPB42, GNPDA1, GPI
DDruggable family + AlphaFold only, no drug0
EDifficult family or no structure, no drug4SLC4A1, SPTA1, SPTB, ANK1

Undrugged target profiles

7 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

SymbolChEMBL assaysDrugged partners (top 3)
SLC4A10
SPTA10
SPTB0
ANK10
EPB420
GNPDA11
GPI2

Clinical trials & evidence

Clinical trials

Clinical trials: 3.

Phase distribution (across all retrieved trials)

PhaseTrials
Not specified3

Top trials by phase / activity

NCTPhaseStatusTitle
NCT01141621Not specifiedTERMINATEDThe Dallas Hereditary Spherocytosis Cohort Study
NCT01276561Not specifiedWITHDRAWNSingle Incision Versus Standard Laparoscopic Splenectomy
NCT04451785Not specifiedCOMPLETEDHereditary Spherocytosis and Vascular Function