Hyperlipidemia
diseaseOn this page
Also known as hyperlipemiahyperlipemiashyperlipidemia (disease)lipemialipemiaslipidemialipidemias
Summary
Hyperlipidemia (MONDO:0021187) is a disease with 6 cohort genes (157 GWAS associations across 15 studies) and 616 clinical trials. Top therapeutic interventions include evolocumab, rosuvastatin, and pitavastatin.
At a glance
- Cohort genes: 6
- GWAS associations: 157
- ClinVar variants: 5
- Clinical trials: 616
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | hyperlipidemia |
| Mondo ID | MONDO:0021187 |
| MeSH | D006949 |
| ICD-10-CM | E78.5 |
| SNOMED CT | 55822004 |
| UMLS | C0020473 |
| MedGen | 5692 |
| Is cancer (heuristic) | no |
Also known as: hyperlipemia · hyperlipemias · hyperlipidemia · hyperlipidemia (disease) · lipemia · lipemias · lipidemia · lipidemias
Data availability: 5 ClinVar variants · 157 GWAS associations (15 studies) · 1 HPO phenotype.
Disease family
An umbrella term covering 3 Mondo subtypes.
Classification path: disease › human disease › disease by developmental or physiological process › metabolic disease › hyperlipidemia
Related subtypes (36): glutaric aciduria, mineral metabolism disease, xanthinuria, chondrocalcinosis, ochronosis disorder, glucose metabolism disease, diabetic kidney disease, xanthoma, diabetic retinopathy, hypertriglyceridemia, gout, lactic acidosis, acquired metabolic disease, lipodystrophy, developmental anomaly of metabolic origin, dopa-responsive dystonia, hypoalphalipoproteinemia, steroid dehydrogenase deficiency-dental anomalies syndrome, inborn errors of metabolism, vitamin B12 deficiency, proteostasis deficiencies, disorder of GPI anchor biosynthesis, bilirubin metabolism disease, hyperlipoproteinemia, carbohydrate metabolism disease, porphyrin metabolism disease, purine metabolism disease, amino acid metabolism disease, pyrimidine metabolism disease, disorder of acid-base balance, disorder of glutamate decarboxylase, tumor lysis syndrome, collagenous sprue, steroid metabolism disease, disorder of organic acid metabolism, skeletal fluorosis
Subtypes (3): familial hyperlipidemia, laminopathy type Decaudain-Vigouroux, hyperalphalipoproteinemia
Genetics & variants
GWAS landscape
157 GWAS associations across 15 studies. Top hits map to 24 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs7412 | 1e-323 | APOE | C | 0.42 |
| rs7528419 | 8e-300 | CELSR2 | A | 0.22 |
| rs12740374 | 6e-259 | CELSR2 | G | 0.21 |
| rs138294113 | 3e-220 | SMARCA4 - LDLR | C | 0.24 |
| rs73015020 | 1e-201 | SMARCA4 - LDLR | G | 0.23 |
| rs964184 | 1e-194 | ZPR1 | G | 0.22 |
| rs28601761 | 2e-179 | TRIB1AL | C | 0.15 |
| rs11591147 | 2e-159 | PCSK9 | G | 0.58 |
| rs668948 | 1e-145 | APOB - TDRD15 | G | 0.16 |
| rs563290 | 1e-130 | APOB - TDRD15 | G | 0.15 |
| rs58542926 | 1e-120 | TM6SF2 | C | 0.21 |
| rs28362286 | 5e-102 | PCSK9 | C | 1.14 |
| rs10455872 | 2e-100 | LPA | A | 0.22 |
| rs142130958 | 8e-99 | SMARCA4 - LDLR | G | 0.3 |
| rs662799 | 1e-76 | APOA5 | ? | 1.79 |
| rs4299376 | 4e-76 | ABCG8 | G | 0.1 |
| rs651821 | 3e-72 | APOA5 | ? | |
| rs115478735 | 1e-66 | ABO | A | 0.11 |
| rs4245791 | 7e-63 | ABCG8 | C | 0.1 |
| rs1260326 | 1e-54 | GCKR | T | 0.08 |
| rs12916 | 1e-52 | CERT1, HMGCR | T | 0.08 |
| rs12239736 | 2e-51 | DOCK7 | T | 0.08 |
| chr8:19859539 | 3e-45 | G | 0.08 | |
| rs3208305 | 5e-41 | LPL | A | 0.07 |
| rs544187825 | 9e-39 | ASGR2 | G | 0.68 |
| chr5:156399950 | 1e-32 | A | 0.06 | |
| rs60201663 | 1e-31 | PMFBP1 | G | 0.2 |
| rs56156922 | 2e-29 | HERPUD1 - CETP | T | 0.06 |
| rs1421085 | 3e-29 | FTO | T | 0.06 |
| chr16:72097827 | 1e-28 | C | 0.07 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST90475718 | Verma A | 2024 | 335,680 | 90,923 | Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. |
| GCST90475717 | Verma A | 2024 | 82,035 | 32,046 | Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. |
| GCST90479927 | Verma A | 2024 | 82,035 | 32,046 | Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. |
| GCST90083754 | Backman JD | 2021 | 51,365 | 320,834 | Exome sequencing and analysis of 454,787 UK Biobank participants. |
| GCST90475716 | Verma A | 2024 | 39,936 | 15,904 | Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. |
| GCST90435754 | Zhou W | 2018 | 35,844 | 373,034 | Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies. |
| GCST010772 | Bi W | 2020 | 35,623 | 247,248 | A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank. |
| GCST90651132 | Liu TY | 2025 | 34,584 | 195,375 | Diversity and longitudinal records: Genetic architecture of disease associations and polygenic risk in the Taiwanese Han population. |
| GCST90726738 | Kim HI | 2026 | 8,803 | 35,223 | Exome sequencing and analysis of 44,028 British South Asians enriched for high autozygosity. |
| GCST90255395 | Nam K | 2022 | 7,099 | 65,111 | Genome-wide study on 72,298 individuals in Korean biobank data for 76 traits. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 6 |
| Tier 2: splice/UTR | 6 |
| Tier 3: regulatory | 3 |
| Tier 4: intronic/intergenic | 35 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 45 |
| low_freq (0.01-0.05) | 2 |
| rare (<0.01) | 2 |
| unknown | 1 |
Functional consequences
| Consequence | Count |
|---|---|
| intron_variant | 15 |
| intergenic_variant | 10 |
| unknown | 10 |
| 3_prime_UTR_variant | 5 |
| missense_variant | 4 |
| regulatory_region_variant | 3 |
| stop_gained | 2 |
| splice_region_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| rs7412 | 19 | 44908822 | C>T | 0.08 | missense_variant | APOE | 1e-323 | Tier 1: coding |
| rs7528419 | 1 | 109274570 | A>G | 0.218 | 3_prime_UTR_variant | CELSR2 | 8e-300 | Tier 2: splice/UTR |
| rs12740374 | 1 | 109274968 | G>T | 0.222 | 3_prime_UTR_variant | CELSR2 | 6e-259 | Tier 2: splice/UTR |
| rs138294113 | 19 | 11081053 | C>T | 0.118 | intergenic_variant | SMARCA4 - LDLR | 3e-220 | Tier 4: intronic/intergenic |
| rs73015020 | 19 | 11081874 | G>A,C | 0.12 | intergenic_variant | SMARCA4 - LDLR | 1e-201 | Tier 4: intronic/intergenic |
| rs964184 | 11 | 116778201 | G>C | 0.141 | 3_prime_UTR_variant | ZPR1 | 1e-194 | Tier 2: splice/UTR |
| rs28601761 | 8 | 125487789 | C>G | 0.413 | intron_variant | TRIB1AL | 2e-179 | Tier 4: intronic/intergenic |
| rs11591147 | 1 | 55039974 | G>A,T | 0.015 | missense_variant | PCSK9 | 2e-159 | Tier 1: coding |
| rs668948 | 2 | 21068657 | G>A | 0.204 | intron_variant | APOB - TDRD15 | 1e-145 | Tier 4: intronic/intergenic |
| rs563290 | 2 | 21065354 | G>A,C | 0.283 | intron_variant | APOB - TDRD15 | 1e-130 | Tier 4: intronic/intergenic |
| rs58542926 | 19 | 19268740 | C>A,T | 0.075 | stop_gained | TM6SF2 | 1e-120 | Tier 1: coding |
| rs28362286 | 1 | 55063542 | C>A,T | 0.007 | stop_gained | PCSK9 | 5e-102 | Tier 1: coding |
| rs10455872 | 6 | 160589086 | A>G | 0.069 | intron_variant | LPA | 2e-100 | Tier 4: intronic/intergenic |
| rs142130958 | 19 | 11079976 | G>A | 0.134 | intergenic_variant | SMARCA4 - LDLR | 8e-99 | Tier 4: intronic/intergenic |
| rs662799 | 11 | 116792991 | G>A,C | 0.05 | regulatory_region_variant | APOA5 | 1e-76 | Tier 3: regulatory |
| rs4299376 | 2 | 43845437 | G>C,T | 0.329 | intron_variant | ABCG8 | 4e-76 | Tier 4: intronic/intergenic |
| rs651821 | 11 | 116791863 | C>A,T | 0.05 | splice_region_variant | APOA5 | 3e-72 | Tier 2: splice/UTR |
| rs115478735 | 9 | 133274295 | A>T | 0.193 | intron_variant | ABO | 1e-66 | Tier 4: intronic/intergenic |
| rs4245791 | 2 | 43847292 | C>A,G,T | 0.273 | intron_variant | ABCG8 | 7e-63 | Tier 4: intronic/intergenic |
| rs1260326 | 2 | 27508073 | T>A,C,G | 0.414 | missense_variant | GCKR | 1e-54 | Tier 1: coding |
| rs12916 | 5 | 75360714 | T>A,C,G | 0.404 | 3_prime_UTR_variant | CERT1, HMGCR | 1e-52 | Tier 2: splice/UTR |
| rs12239736 | 1 | 62620326 | T>A,C | 0.367 | intron_variant | DOCK7 | 2e-51 | Tier 4: intronic/intergenic |
| chr8:19859539 | 0.289 | 3e-45 | Tier 4: intronic/intergenic | |||||
| rs3208305 | 8 | 19966137 | A>T | 0.333 | 3_prime_UTR_variant | LPL | 5e-41 | Tier 2: splice/UTR |
| rs544187825 | 17 | 7100610 | G>A | 0.003 | intergenic_variant | ASGR2 | 9e-39 | Tier 4: intronic/intergenic |
| chr5:156399950 | 0.372 | 1e-32 | Tier 4: intronic/intergenic | |||||
| rs60201663 | 16 | 72154990 | G>A,C | 0.112 | intron_variant | PMFBP1 | 1e-31 | Tier 4: intronic/intergenic |
| rs56156922 | 16 | 56953457 | T>C | 0.317 | intergenic_variant | HERPUD1 - CETP | 2e-29 | Tier 4: intronic/intergenic |
| rs1421085 | 16 | 53767042 | T>C | 0.408 | intron_variant | FTO | 3e-29 | Tier 4: intronic/intergenic |
| chr16:72097827 | 0.2 | 1e-28 | Tier 4: intronic/intergenic |
ClinVar germline variants
5 retrieved; paginated sample, class counts are floors:
1 uncertain significance, 1 conflicting classifications of pathogenicity; risk factor, 1 conflicting classifications of pathogenicity, 1 pathogenic, 1 pathogenic/likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 523434 | NM_019023.5(PRMT7):c.1713C>A (p.Cys571Ter) | PRMT7 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 523435 | NM_019023.5(PRMT7):c.322G>T (p.Glu108Ter) | PRMT7 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 199044 | NM_000157.4(GBA1):c.1093G>A (p.Glu365Lys) | GBA1 | Conflicting classifications of pathogenicity; risk factor | criteria provided, conflicting classifications |
| 251662 | NM_000527.5(LDLR):c.1097A>G (p.Gln366Arg) | LDLR | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 1338787 | NM_173598.6(KSR2):c.2512C>T (p.Arg838Cys) | KSR2 | Uncertain significance | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 12 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| PRMT7 | Orphanet:464288 | Short stature-brachydactyly-obesity-global developmental delay syndrome |
| DNM2 | Orphanet:100044 | Autosomal dominant intermediate Charcot-Marie-Tooth disease type B |
| DNM2 | Orphanet:169189 | Autosomal dominant centronuclear myopathy |
| DNM2 | Orphanet:228179 | Autosomal dominant Charcot-Marie-Tooth disease type 2M |
| DNM2 | Orphanet:363409 | Fetal akinesia-cerebral and retinal hemorrhage syndrome |
| GBA1 | Orphanet:2072 | Gaucher disease-ophthalmoplegia-cardiovascular calcification syndrome |
| GBA1 | Orphanet:411602 | Hereditary late-onset Parkinson disease |
| GBA1 | Orphanet:77259 | Gaucher disease type 1 |
| GBA1 | Orphanet:77260 | Gaucher disease type 2 |
| GBA1 | Orphanet:77261 | Gaucher disease type 3 |
| GBA1 | Orphanet:85212 | Fetal Gaucher disease |
| LDLR | Orphanet:391665 | Homozygous familial hypercholesterolemia |
Cohort genes → proteins
6 cohort genes, 6 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 2 |
| multi_evidence | 4 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| KSR2 | HGNC:18610 | ENSG00000171435 | Q6VAB6 | Kinase suppressor of Ras 2 | clinvar |
| PRMT7 | HGNC:25557 | ENSG00000132600 | Q9NVM4 | Protein arginine N-methyltransferase 7 | clinvar |
| HCG22 | HGNC:27780 | ENSG00000228789 | E2RYF7 | Protein PBMUCL2 | gwas |
| DNM2 | HGNC:2974 | ENSG00000079805 | P50570 | Dynamin-2 | gwas |
| GBA1 | HGNC:4177 | ENSG00000177628 | P04062 | Lysosomal acid glucosylceramidase | clinvar |
| LDLR | HGNC:6547 | ENSG00000130164 | P01130 | Low-density lipoprotein receptor | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| KSR2 | Kinase suppressor of Ras 2 | Location-regulated scaffold connecting MEK to RAF. |
| PRMT7 | Protein arginine N-methyltransferase 7 | Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. |
| DNM2 | Dynamin-2 | Catalyzes the hydrolysis of GTP and utilizes this energy to mediate vesicle scission at plasma membrane during endocytosis and filament remodeling at many actin structures during organization of the actin cytoskeleton. |
| GBA1 | Lysosomal acid glucosylceramidase | Glucosylceramidase that catalyzes, within the lysosomal compartment, the hydrolysis of glucosylceramides/GlcCers (such as beta-D-glucosyl-(1<->1’)-N-acylsphing-4-enine) into free ceramides (such as N-acylsphing-4-enine) and glucose. |
| LDLR | Low-density lipoprotein receptor | Binds low density lipoprotein /LDL, the major cholesterol-carrying lipoprotein of plasma, and transports it into cells by endocytosis. |
Protein-family classification
Druggable: 3 · Difficult: 1 · Unknown: 2 · Druggable fraction: 0.5
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Enzyme (other) | 2 | 4.0× | 0.333 |
| Kinase | 1 | 4.6× | 0.396 |
| Scaffold/PPI | 1 | 2.9× | 0.401 |
| Other/Unknown | 2 | 0.6× | 0.936 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| KSR2 | Kinase | yes | 2.7.11.25 | Prot_kinase_dom, Ser-Thr/Tyr_kinase_cat_dom, PKC_DAG/PE |
| PRMT7 | Enzyme (other) | yes | 2.1.1.321 | MeTrfase_PRMT7, Arg_MeTrfase, SAM-dependent_MTases_sf |
| HCG22 | Other/Unknown | no | EZH_Inhibitor | |
| DNM2 | Scaffold/PPI | no | 3.6.5.5 | Dynamin_stalk, Dynamin_GTPase, PH_domain |
| GBA1 | Enzyme (other) | yes | 3.2.1.45 | Glyco_hydro_30, GH_hydrolase_sf, GH30_C |
| LDLR | Other/Unknown | no | LDLR_classB_rpt, EGF-type_Asp/Asn_hydroxyl_site, EGF |
Expression context
Cohort genes with no expression data: 0.
5 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 6 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| Brodmann (1909) area 23 | 1 |
| middle temporal gyrus | 1 |
| postcentral gyrus | 1 |
| cerebellar cortex | 1 |
| cerebellar hemisphere | 1 |
| right hemisphere of cerebellum | 1 |
| esophagus mucosa | 1 |
| lower esophagus mucosa | 1 |
| male germ line stem cell (sensu Vertebrata) in testis | 1 |
| granulocyte | 1 |
| metanephros cortex | 1 |
| mucosa of transverse colon | 1 |
| islet of Langerhans | 1 |
| placenta | 1 |
| stromal cell of endometrium | 1 |
| adrenal tissue | 1 |
| lower lobe of lung | 1 |
| right adrenal gland | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| KSR2 | 114 | broad | marker | Brodmann (1909) area 23, middle temporal gyrus, postcentral gyrus |
| PRMT7 | 186 | ubiquitous | marker | right hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex |
| HCG22 | 107 | tissue_specific | yes | lower esophagus mucosa, male germ line stem cell (sensu Vertebrata) in testis, esophagus mucosa |
| DNM2 | 234 | ubiquitous | marker | metanephros cortex, granulocyte, mucosa of transverse colon |
| GBA1 | 134 | ubiquitous | marker | stromal cell of endometrium, islet of Langerhans, placenta |
| LDLR | 281 | ubiquitous | marker | adrenal tissue, lower lobe of lung, right adrenal gland |
Protein interactions among cohort
Intra-cohort edges: 0.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| DNM2 | 4,715 |
| GBA1 | 2,568 |
| PRMT7 | 2,036 |
| LDLR | 1,426 |
| KSR2 | 1,183 |
| HCG22 | 0 |
Structural data
PDB: 4 · AlphaFold-only: 2 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| GBA1 | P04062 | 58 |
| LDLR | P01130 | 36 |
| KSR2 | Q6VAB6 | 9 |
| DNM2 | P50570 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| PRMT7 | Q9NVM4 | 93.19 |
| HCG22 | E2RYF7 | 69.41 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 46. Enrichment computed across 6 evidence-associated genes (5 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| NOSTRIN mediated eNOS trafficking | 1 | 456.8× | 0.034 | DNM2 |
| Chylomicron clearance | 1 | 456.8× | 0.034 | LDLR |
| Clathrin-mediated endocytosis | 2 | 34.1× | 0.034 | DNM2, LDLR |
| Formation of annular gap junctions | 1 | 207.6× | 0.040 | DNM2 |
| Gap junction degradation | 1 | 190.3× | 0.040 | DNM2 |
| Retrograde neurotrophin signalling | 1 | 163.1× | 0.040 | DNM2 |
| LDL clearance | 1 | 108.8× | 0.040 | LDLR |
| Plasma lipoprotein clearance | 1 | 95.2× | 0.040 | LDLR |
| Signaling by RAS mutants | 1 | 84.6× | 0.040 | KSR2 |
| Metabolism of fat-soluble vitamins | 1 | 76.1× | 0.040 | LDLR |
| Lysosome Vesicle Biogenesis | 1 | 65.3× | 0.040 | DNM2 |
| Signaling by high-kinase activity BRAF mutants | 1 | 63.4× | 0.040 | KSR2 |
| Association of TriC/CCT with target proteins during biosynthesis | 1 | 58.6× | 0.040 | GBA1 |
| Glycosphingolipid catabolism | 1 | 58.6× | 0.040 | GBA1 |
| MAP2K and MAPK activation | 1 | 57.1× | 0.040 | KSR2 |
| NGF-stimulated transcription | 1 | 57.1× | 0.040 | DNM2 |
| Signaling by RAF1 mutants | 1 | 55.7× | 0.040 | KSR2 |
| Visual phototransduction | 1 | 51.9× | 0.040 | LDLR |
| Signaling by moderate kinase activity BRAF mutants | 1 | 50.8× | 0.040 | KSR2 |
| Paradoxical activation of RAF signaling by kinase inactive BRAF | 1 | 50.8× | 0.040 | KSR2 |
| Signaling downstream of RAS mutants | 1 | 50.8× | 0.040 | KSR2 |
| Oncogenic MAPK signaling | 1 | 49.6× | 0.040 | KSR2 |
| Retinoid metabolism and transport | 1 | 49.6× | 0.040 | LDLR |
| Plasma lipoprotein assembly, remodeling, and clearance | 1 | 45.7× | 0.041 | LDLR |
| Recycling pathway of L1 | 1 | 44.8× | 0.041 | DNM2 |
| Golgi Associated Vesicle Biogenesis | 1 | 40.1× | 0.043 | DNM2 |
| Degradation of CDH1 | 1 | 39.4× | 0.043 | DNM2 |
| Signaling by BRAF and RAF1 fusions | 1 | 34.1× | 0.048 | KSR2 |
| RMTs methylate histone arginines | 1 | 29.3× | 0.053 | PRMT7 |
| Toll Like Receptor 4 (TLR4) Cascade | 1 | 26.2× | 0.056 | DNM2 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| negative regulation of protein metabolic process | 2 | 842.6× | 2e-04 | GBA1, LDLR |
| positive regulation of neuronal action potential | 1 | 3370.4× | 0.006 | GBA1 |
| regulation of phosphatidylcholine catabolic process | 1 | 1685.2× | 0.006 | LDLR |
| cerebellar Purkinje cell layer formation | 1 | 1685.2× | 0.006 | GBA1 |
| receptor-mediated endocytosis involved in cholesterol transport | 1 | 1685.2× | 0.006 | LDLR |
| vesicle scission | 1 | 1685.2× | 0.006 | DNM2 |
| beta-glucoside catabolic process | 1 | 1685.2× | 0.006 | GBA1 |
| negative regulation of membrane tubulation | 1 | 1685.2× | 0.006 | DNM2 |
| glucosylceramide catabolic process | 1 | 1123.5× | 0.006 | GBA1 |
| termination of signal transduction | 1 | 1123.5× | 0.006 | GBA1 |
| actin filament bundle organization | 1 | 1123.5× | 0.006 | DNM2 |
| negative regulation of astrocyte activation | 1 | 1123.5× | 0.006 | LDLR |
| membrane tubulation | 1 | 1123.5× | 0.006 | DNM2 |
| regulation of lysosomal protein catabolic process | 1 | 1123.5× | 0.006 | GBA1 |
| phagocytosis | 2 | 96.3× | 0.006 | DNM2, LDLR |
| receptor-mediated endocytosis | 2 | 88.7× | 0.006 | DNM2, LDLR |
| cholesterol metabolic process | 2 | 78.4× | 0.006 | GBA1, LDLR |
| autophagy | 2 | 44.1× | 0.006 | DNM2, GBA1 |
| peptidyl-arginine methylation | 1 | 842.6× | 0.007 | PRMT7 |
| plasma lipoprotein particle clearance | 1 | 842.6× | 0.007 | LDLR |
| endocytosis | 2 | 38.1× | 0.007 | DNM2, LDLR |
| negative regulation of receptor recycling | 1 | 674.1× | 0.007 | LDLR |
| synaptic vesicle budding from presynaptic endocytic zone membrane | 1 | 674.1× | 0.007 | DNM2 |
| pyramidal neuron differentiation | 1 | 674.1× | 0.007 | GBA1 |
| autophagosome organization | 1 | 674.1× | 0.007 | GBA1 |
| positive regulation of lysosomal protein catabolic process | 1 | 674.1× | 0.007 | LDLR |
| response to pH | 1 | 561.7× | 0.007 | GBA1 |
| cholesterol import | 1 | 561.7× | 0.007 | LDLR |
| high-density lipoprotein particle clearance | 1 | 481.5× | 0.008 | LDLR |
| lipoprotein catabolic process | 1 | 481.5× | 0.008 | LDLR |
Therapeutics
Drugs indicated for this disease
3 approved, 15 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Ezetimibe | Approved (phase 4) |
| Niacin | Approved (phase 4) |
| Simvastatin | Approved (phase 4) |
| Atorvastatin | Phase 3 (in late-stage trials) |
| Bempedoic Acid | Phase 3 (in late-stage trials) |
| Bococizumab | Phase 3 (in late-stage trials) |
| Evacetrapib | Phase 3 (in late-stage trials) |
| Evolocumab | Phase 3 (in late-stage trials) |
| Fenofibrate | Phase 3 (in late-stage trials) |
| K-877 | Phase 3 (in late-stage trials) |
| Laropiprant | Phase 3 (in late-stage trials) |
| Ongericimab | Phase 3 (in late-stage trials) |
| Pitavastatin | Phase 3 (in late-stage trials) |
| Pravastatin | Phase 3 (in late-stage trials) |
| Probucol | Phase 3 (in late-stage trials) |
| Rosuvastatin | Phase 3 (in late-stage trials) |
| Topiramate | Phase 3 (in late-stage trials) |
| Torcetrapib | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Anacetrapib, Dalcetrapib, Dextrose, Insulin Human, Insulin Pork, Lapaquistat Acetate, Seladelpar, Sitagliptin, Teduglutide, Tilarginine, Zinc Sulfate.
Drug target analysis
Approved (phase 4): 2 · Phase ≥3: 3 · Phased (≥1): 3 · Undrugged: 3
Druggability breadth: 5 of 6 evidence-associated genes (83%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| GBA1 | MIGALASTAT |
| LDLR | NILOTINIB |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| GBA1 | 12 | 4 |
| PRMT7 | 1 | 3 |
| LDLR | 1 | 4 |
| KSR2 | 0 | 0 |
| HCG22 | 0 | 0 |
| DNM2 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| MIGALASTAT | 4 | GBA1 |
| GLUCONOLACTONE | 4 | GBA1 |
| MIGLITOL | 4 | GBA1 |
| MEXILETINE | 4 | GBA1 |
| GENTIAN VIOLET | 4 | GBA1 |
| CHLORHEXIDINE | 4 | GBA1 |
| TAMOXIFEN | 4 | GBA1 |
| NILOTINIB | 4 | LDLR |
| ADEMETIONINE | 3 | PRMT7 |
| AMBROXOL | 3 | GBA1 |
| AFEGOSTAT | 2 | GBA1 |
| AFEGOSTAT TARTRATE | 2 | GBA1 |
| DUVOGLUSTAT | 2 | GBA1 |
| NIZUBAGLUSTAT | 2 | GBA1 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 4.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| GBA1 | 436 | Binding:403, Functional:33 |
| PRMT7 | 100 | Binding:98, Functional:2 |
| LDLR | 55 | Binding:54, Functional:1 |
| KSR2 | 28 | Binding:28 |
| DNM2 | 15 | Binding:15 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| KSR2 | 2.7.11.25 | mitogen-activated protein kinase kinase kinase |
| PRMT7 | 2.1.1.321 | type III protein arginine methyltransferase |
| DNM2 | 3.6.5.5 | dynamin GTPase |
| GBA1 | 3.2.1.45 | glucosylceramidase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| PRMT7 | 100 |
| GBA1 | 436 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 6; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
14 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| MIGALASTAT | 4 | GBA1 |
| GLUCONOLACTONE | 4 | GBA1 |
| MIGLITOL | 4 | GBA1 |
| MEXILETINE | 4 | GBA1 |
| GENTIAN VIOLET | 4 | GBA1 |
| CHLORHEXIDINE | 4 | GBA1 |
| TAMOXIFEN | 4 | GBA1 |
| NILOTINIB | 4 | LDLR |
| ADEMETIONINE | 3 | PRMT7 |
| AMBROXOL | 3 | GBA1 |
| AFEGOSTAT | 2 | GBA1 |
| AFEGOSTAT TARTRATE | 2 | GBA1 |
| DUVOGLUSTAT | 2 | GBA1 |
| NIZUBAGLUSTAT | 2 | GBA1 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 2 | GBA1, LDLR |
| B | Phased (≥1) drug, not yet approved | 1 | PRMT7 |
| C | Druggable family + PDB, no drug | 1 | KSR2 |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 2 | HCG22, DNM2 |
Undrugged target profiles
3 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| KSR2 | 28 | — |
| HCG22 | 0 | — |
| DNM2 | 15 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 616.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 318 |
| PHASE3 | 86 |
| PHASE1 | 73 |
| PHASE4 | 55 |
| PHASE2 | 52 |
| PHASE2/PHASE3 | 18 |
| PHASE1/PHASE2 | 10 |
| EARLY_PHASE1 | 4 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT05537948 | PHASE4 | ACTIVE_NOT_RECRUITING | Efficacy and Safety of Pitavastatin and PCSK9 Inhibitors in Liver Transplant Patients |
| NCT06586684 | PHASE4 | NOT_YET_RECRUITING | Effect of Small Interfering RNA Inclisiran on Carotid Plaques As Assessed by Carotid Ultrasound |
| NCT06789432 | PHASE4 | RECRUITING | Efficacy and Safety of Atorvastatin and Ezetimibe (10/10mg) Fixed Dose Combination Versus Atorvastatin (20mg) Monotherapy in Bangladeshi Population |
| NCT00117494 | PHASE4 | COMPLETED | Rosuvastatin Versus Pravastatin in HIV Patients Treated With Boosted Protease Inhibitors (PI) (ANRS126) |
| NCT00147251 | PHASE4 | COMPLETED | Stop Atherosclerosis in Native Diabetics Study |
| NCT00157638 | PHASE4 | COMPLETED | Integrating Family Medicine and Pharmacy to Advance Primary Care Therapeutics |
| NCT00174304 | PHASE4 | COMPLETED | Open Label Study To Assess The Effectiveness Of Amlodipine-Atorvastatin Combination In Hypertension And Dyslipidemia. |
| NCT00174330 | PHASE4 | COMPLETED | Comparing Amlodipine/Atorvastatin Co-Administration To Amlodipine Alone In Patients With Hypertension And Dyslipidemia |
| NCT00203476 | PHASE4 | COMPLETED | A Prospective, Open Label Comparison of Ezetimibe, Niacin, and Colestipol as Adjunct Therapy in Lipid Reduction |
| NCT00211705 | PHASE4 | COMPLETED | Management of Elevated Cholesterol in the Primary Prevention Group of Adult Japanese(MEGA Study) |
| NCT00222833 | PHASE4 | COMPLETED | The Effect of Switching to Aripiprazole on Heart Health in Overweight and Obese Patients With Schizophrenia |
| NCT00225849 | PHASE4 | UNKNOWN | Japanese Primary Prevention Project With Aspirin |
| NCT00249938 | PHASE4 | COMPLETED | Evaluation of Combination Cholesterol Treatments in Patients With High Cholesterol. |
| NCT00299169 | PHASE4 | TERMINATED | Randomized Trial Comparing N of 1 Trials to Standard Practice to Improve Adherence to Statins in Patients With Diabetes |
| NCT00345657 | PHASE4 | COMPLETED | Efficacy Study of Extended-Release Niacin/Lovastatin Versus Usual Care |
| NCT00360074 | PHASE4 | COMPLETED | Phase 4 Study in Secondary Hypothyroidism: Body Weight Adapted Thyroxin Treatment and Triiodothyronine Supplementation |
| NCT00451828 | PHASE4 | COMPLETED | Cholesterol and Pharmacogenetic Study |
| NCT00473655 | PHASE4 | COMPLETED | Effect of Rosuvastatin on Triglyceride Levels in Mexican Hypertriglyceridemic Patients |
| NCT00490672 | PHASE4 | COMPLETED | Community Based Multiple Risk Factors Intervention Strategy |
| NCT00552747 | PHASE4 | COMPLETED | Effect of Fenofibrate on Endothelial Function and High-density Lipoproteins (HDL)in Patients With Coronary Heart Disease |
| NCT00603876 | PHASE4 | COMPLETED | Efficacy of Almonds Added to Chronic Statin Therapy |
| NCT00630734 | PHASE4 | COMPLETED | Genetic Predictors of Variability in the Drug-drug Interaction Between Darunavir/Ritonavir and Pravastatin |
| NCT00640549 | PHASE4 | TERMINATED | Atorvastatin and LDL Profile in Non-Insulin Dependent Diabetes Mellitus |
| NCT00645424 | PHASE4 | COMPLETED | A Study To Evaluate The Safety And Efficacy Of Atorvastatin In Patients With Diabetes And High Cholesterol |
| NCT00738985 | PHASE4 | WITHDRAWN | Efficacy of Ezetimibe/Simvastatin 10/20 mg and MK0524A (1-2 g/Day) in Mixed Hyperlipidemia and Two or More Risk Factors |
| NCT00753883 | PHASE4 | COMPLETED | Ezetrol Post-Marketing Study |
| NCT00843661 | PHASE4 | UNKNOWN | Coadministration of Ezetimibe With Fenofibrate Versus Pravastatin Monotherapy for the Treatment of Hyperlipidaemia in HIV-infected Patients |
| NCT00885872 | PHASE4 | UNKNOWN | Rosuvastatin Evaluation of Atherosclerotic Chinese Patients (REACH) |
| NCT00923676 | PHASE4 | UNKNOWN | Treatment of Hyperlipidemia and Sexual Dysfunction |
| NCT01023607 | PHASE4 | COMPLETED | Evaluation of Statin-induced Lipid-rich Plaque Progression by Optical Coherence Tomography (OCT) Combined With Intravascular Ultrasound (IVUS) |
| NCT01089231 | PHASE4 | COMPLETED | Effects of Omega-3 Fatty Acids on the Human Gene Expression |
| NCT01131832 | PHASE4 | COMPLETED | Genetic Basis for Heterogeneity in Response of Plasma Lipids to Plant Sterols |
| NCT01212159 | PHASE4 | COMPLETED | Telephone Based Management of Hyperlipidemia |
| NCT01239004 | PHASE4 | COMPLETED | Colesevelam Treatment for Impaired Fasting Glucose During Niacin Therapy |
| NCT01291641 | PHASE4 | COMPLETED | Effect of Probucol and/or Cilostazol on Mean IMT in Patients With Coronary Heart dIsease |
| NCT01382277 | PHASE4 | UNKNOWN | Rosuvastatin Effect on Reducing Coronary Atherosclerosis Plaques Volume |
| NCT01409434 | PHASE4 | COMPLETED | Long Term Antihypertensive Exposure and Adverse Metabolic Effects: PEAR Follow-Up Study |
| NCT01414803 | PHASE4 | COMPLETED | Tolerability and Efficacy of Rosuvastatin - Fenofibrate Combine Therapy in Korean Patients With Combined Hyperlipidemia |
| NCT01448174 | PHASE4 | COMPLETED | Salusin-alpha - a New Factor in the Pathogenesis of Lipid Abnormalities in Hemodialysis Patients |
| NCT01564875 | PHASE4 | UNKNOWN | Efficacy and Safety of Simvast Controlled Release (CR) and Zocor in Chronic Kidney Disease(CKD) Stage 3, 4 and 5 Patients With Hyperlipidemia |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| EVOLOCUMAB | 4 | 14 |
| ROSUVASTATIN | 4 | 14 |
| PITAVASTATIN | 4 | 13 |
| FENOFIBRATE | 4 | 10 |
| MIPOMERSEN | 4 | 8 |
| COLESEVELAM | 4 | 7 |
| NIACIN | 4 | 7 |
| DARUNAVIR | 4 | 6 |
| PRAVASTATIN | 4 | 6 |
| ATORVASTATIN | 4 | 5 |
| EZETIMIBE | 4 | 5 |
| BEMPEDOIC ACID | 4 | 4 |
| ROSIGLITAZONE | 4 | 4 |
| SIMVASTATIN | 4 | 4 |
| LIOTHYRONINE | 4 | 3 |
| TEDUGLUTIDE | 4 | 3 |
| ALIROCUMAB | 4 | 2 |
| AMLODIPINE | 4 | 2 |
| ATAZANAVIR | 4 | 2 |
| FISH OIL | 4 | 2 |
| LEVOCARNITINE | 4 | 2 |
| METRELEPTIN | 4 | 2 |
| OMEGA-3-ACID ETHYL ESTERS | 4 | 2 |
| PROBUCOL | 4 | 2 |
| TELMISARTAN | 4 | 2 |
| ACETYLCHOLINE | 4 | 1 |
| ACIPIMOX | 4 | 1 |
| ARIPIPRAZOLE | 4 | 1 |
| ASPIRIN | 4 | 1 |
| BERBERINE | 4 | 1 |
Related Atlas pages
- Cohort genes: KSR2, PRMT7, HCG22, DNM2, GBA1, LDLR
- Drugs: Evolocumab, Rosuvastatin, Pitavastatin, Fenofibrate, Mipomersen, Colesevelam, Niacin, Darunavir, Pravastatin, Atorvastatin, Ezetimibe, Bempedoic Acid, Rosiglitazone, Simvastatin, Liothyronine, Teduglutide, Alirocumab, Amlodipine, Atazanavir, Fish Oil, Levocarnitine, Metreleptin, OMEGA-3-ACID ETHYL ESTERS, Probucol, Telmisartan, Acetylcholine, Acipimox, Aripiprazole, Aspirin, Berberine