Hypertensive disorder
diseaseOn this page
Also known as blood pressure, highblood pressure, increasedhigh blood pressureHTNhypertensive diseaseincreased blood pressurepressure, high bloodvascular hypertensive disorder
Summary
Hypertensive disorder (MONDO:0005044) is a disease (an umbrella term covering 12 Mondo subtypes) with 75 cohort genes (2,084 GWAS associations across 176 studies) and 4,735 clinical trials. The dominant Reactome pathway is NCAM1 interactions (7 cohort genes). Top therapeutic interventions include losartan, amlodipine, and hydrochlorothiazide.
At a glance
- Umbrella term: 12 Mondo subtypes
- Cohort genes: 75
- GWAS associations: 2,084
- ClinVar variants: 29
- Clinical trials: 4,735
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | hypertensive disorder |
| Mondo ID | MONDO:0005044 |
| EFO | EFO:0000537 |
| MeSH | D006973 |
| DOID | DOID:10763 |
| ICD-10-CM | I10-I16, I15 |
| NCIT | C3117 |
| SNOMED CT | 38341003 |
| UMLS | C0020538 |
| MedGen | 6969 |
| Anatomy (UBERON) | UBERON:0004573 |
| Is cancer (heuristic) | no |
Also known as: blood pressure, high · blood pressure, increased · high blood pressure · HTN · hypertensive disease · increased blood pressure · pressure, high blood · vascular hypertensive disorder
Data availability: 29 ClinVar variants · 2,084 GWAS associations (176 studies) · 1 HPO phenotype · 6 cell lines.
Disease family
An umbrella term covering 12 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › cardiovascular disorder › vascular disorder › arterial disorder › hypertensive disorder
Related subtypes (29): vertebral artery insufficiency, splenic artery aneurysm, basilar artery insufficiency, arteriosclerosis disorder, subclavian artery aneurysm, pulmonary artery choriocarcinoma, pulmonary artery leiomyosarcoma, coronary artery disorder, carotid artery disorder, pulmonary embolism, peripheral arterial disease, hypotensive disorder, large artery stroke, aortic disorder, cervical artery dissection, anterior spinal artery syndrome, fibromuscular dysplasia, retinal arterial tortuosity, Sneddon syndrome, celiac trunk compression syndrome, pediatric arterial ischemic stroke, absence of the pulmonary artery, arterial occlusion, aberrant subclavian artery, anterior spinal artery stroke, arteritis, pulmonary artery disease, fibromuscular dysplasia, multifocal, carotid web
Subtypes (12): essential hypertension, secondary hypertension, pulmonary hypertension, early onset hypertension, chemotherapy-induced hypertension, intracranial hypertension, malignant hypertension, ocular hypertension, kallikrein hypertension, hypertension, pregnancy-induced, resistant hypertension, hypertensive urgency
Genetics & variants
GWAS landscape
2,084 GWAS associations across 176 studies. Top hits map to 27 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs10857147 | 4e-121 | PRDM8 - FGF5 | ? | 0.11 |
| rs11105378 | 9e-54 | ATP2B1 | ? | 0.09 |
| rs1421085 | 3e-51 | FTO | ? | |
| rs3184504 | 2e-49 | ATXN2, SH2B3 | ? | |
| rs13125101 | 5e-49 | PRDM8 - FGF5 | ? | |
| rs11099097 | 2e-48 | PRDM8 - FGF5 | ? | |
| rs7827545 | 2e-44 | ZFAT x ZFAT | G | |
| rs11014267 | 2e-43 | CACNB2 | ? | 0.06 |
| rs12656497 | 5e-43 | NPR3 - LINC02120 | ? | |
| rs1275978 | 7e-43 | KCNK3 | ? | 0.06 |
| rs55823223 | 2e-41 | TRIM65 | A | |
| rs3918226 | 2e-39 | NOS3 | ? | |
| chr4:81184341 | 4e-37 | ? | 0.19 | |
| rs604723 | 1e-36 | ARHGAP42 | ? | |
| rs16998073 | 6e-36 | PRDM8 - FGF5 | T | 1.2 |
| rs8027450 | 6e-36 | FURIN | ? | |
| rs880315 | 9e-36 | CASZ1 | ? | 0.05 |
| rs1275988 | 1e-35 | RPL37P11 - KCNK3 | ? | |
| rs55857306 | 4e-35 | CLCN6 | ? | |
| rs198851 | 1e-34 | H2BC4 | ? | |
| rs17367504 | 4e-34 | MTHFR | ? | 0.1 |
| rs1401982 | 4e-32 | ATP2B1 | G | 0.94 |
| rs79105258 | 9e-31 | CUX2 | A | 0.17 |
| rs35441 | 1e-28 | TBX3-AS1 - UBA52P7 | T | 0.94 |
| rs592373 | 2e-27 | LSP1 | ? | |
| rs167479 | 4e-27 | RGL3 | ? | |
| rs2301597 | 7e-27 | NMT1 | ? | |
| rs11451130 | 2e-26 | TBX3-AS1 - UBA52P7 | ? | |
| rs12978472 | 9e-26 | INSR | ? | |
| rs2137320 | 1e-25 | LSP1 | A | 1.06 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST007610 | Zhu Z | 2019 | 144,793 | 313,761 | Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis. |
| GCST90038604 | Donertas HM | 2021 | 129,909 | 354,689 | Common genetic associations between age-related diseases. |
| GCST90042688 | Jiang L | 2021 | 128,883 | 291,510 | A generalized linear mixed model association tool for biobank-scale data. |
| GCST90042675 | Jiang L | 2021 | 89,851 | 307,528 | A generalized linear mixed model association tool for biobank-scale data. |
| GCST006023 | Surendran P | 2016 | 83,330 | 73,760 | Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension. |
| GCST90042702 | Jiang L | 2021 | 75,869 | 283,494 | A generalized linear mixed model association tool for biobank-scale data. |
| GCST007707 | Takeuchi F | 2018 | 22,566 | 28,226 | Interethnic analyses of blood pressure loci in populations of East Asian and European descent. |
| GCST007611 | Zhu Z | 2019 | 12,550 | 46,368 | Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis. |
| GCST008036 | Wojcik GL | 2019 | 11,863 | 5,289 | Genetic analyses of diverse populations improves discovery for complex traits. |
| GCST011141 | Jeong H | 2020 | 8,178 | 9,558 | Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 3 |
| Tier 2: splice/UTR | 0 |
| Tier 3: regulatory | 0 |
| Tier 4: intronic/intergenic | 47 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 46 |
| low_freq (0.01-0.05) | 0 |
| rare (<0.01) | 0 |
| unknown | 4 |
Functional consequences
| Consequence | Count |
|---|---|
| intron_variant | 32 |
| intergenic_variant | 11 |
| missense_variant | 3 |
| unknown | 3 |
| intron_variant x intron_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| rs10857147 | 4 | 80259918 | A>T | 0.05 | intergenic_variant | PRDM8 - FGF5 | 4e-121 | Tier 4: intronic/intergenic |
| rs11105378 | 12 | 89696964 | C>T | 0.05 | intron_variant | ATP2B1 | 9e-54 | Tier 4: intronic/intergenic |
| rs1421085 | 16 | 53767042 | T>C | 0.05 | intron_variant | FTO | 3e-51 | Tier 4: intronic/intergenic |
| rs3184504 | 12 | 111446804 | T>A,C,G | 0.05 | missense_variant | ATXN2, SH2B3 | 2e-49 | Tier 1: coding |
| rs13125101 | 4 | 80253438 | G>A | 0.05 | intergenic_variant | PRDM8 - FGF5 | 5e-49 | Tier 4: intronic/intergenic |
| rs11099097 | 4 | 80246155 | C>G,T | 0.05 | intergenic_variant | PRDM8 - FGF5 | 2e-48 | Tier 4: intronic/intergenic |
| rs7827545 | 8 x 8 | 134554324 | C>A,T | 0.05 | intron_variant x intron_variant | ZFAT x ZFAT | 2e-44 | Tier 4: intronic/intergenic |
| rs11014267 | 10 | 18448045 | G>A,T | 0.05 | intron_variant | CACNB2 | 2e-43 | Tier 4: intronic/intergenic |
| rs12656497 | 5 | 32831833 | T>A,C,G | 0.05 | intergenic_variant | NPR3 - LINC02120 | 5e-43 | Tier 4: intronic/intergenic |
| rs1275978 | 2 | 26700227 | C>T | 0.05 | intron_variant | KCNK3 | 7e-43 | Tier 4: intronic/intergenic |
| rs55823223 | 17 | 75894282 | G>A,C | 0.14 | intron_variant | TRIM65 | 2e-41 | Tier 4: intronic/intergenic |
| rs3918226 | 7 | 150993088 | C>T | 0.05 | intron_variant | NOS3 | 2e-39 | Tier 4: intronic/intergenic |
| chr4:81184341 | 4e-37 | Tier 4: intronic/intergenic | ||||||
| rs604723 | 11 | 100739815 | T>C | 0.05 | intron_variant | ARHGAP42 | 1e-36 | Tier 4: intronic/intergenic |
| rs16998073 | 4 | 80263187 | A>C,G,T | 0.05 | intergenic_variant | PRDM8 - FGF5 | 6e-36 | Tier 4: intronic/intergenic |
| rs8027450 | 15 | 90875164 | C>A,T | 0.05 | intron_variant | FURIN | 6e-36 | Tier 4: intronic/intergenic |
| rs880315 | 1 | 10736809 | T>C,G | 0.05 | intron_variant | CASZ1 | 9e-36 | Tier 4: intronic/intergenic |
| rs1275988 | 2 | 26691496 | C>T | 0.05 | intron_variant | RPL37P11 - KCNK3 | 1e-35 | Tier 4: intronic/intergenic |
| rs55857306 | 1 | 11835738 | G>A,C,T | 0.05 | intron_variant | CLCN6 | 4e-35 | Tier 4: intronic/intergenic |
| rs198851 | 6 | 26104404 | T>A,C,G | 0.05 | intergenic_variant | H2BC4 | 1e-34 | Tier 4: intronic/intergenic |
| rs17367504 | 1 | 11802721 | A>G | 0.05 | intron_variant | MTHFR | 4e-34 | Tier 4: intronic/intergenic |
| rs1401982 | 12 | 89595822 | G>A,T | 0.05 | intron_variant | ATP2B1 | 4e-32 | Tier 4: intronic/intergenic |
| rs79105258 | 12 | 111280427 | C>A,T | 0.253 | intron_variant | CUX2 | 9e-31 | Tier 4: intronic/intergenic |
| rs35441 | 12 | 115115310 | C>A,G,T | 0.05 | intron_variant | TBX3-AS1 - UBA52P7 | 1e-28 | Tier 4: intronic/intergenic |
| rs592373 | 11 | 1869760 | G>A,C,T | 0.05 | intron_variant | LSP1 | 2e-27 | Tier 4: intronic/intergenic |
| rs167479 | 19 | 11416089 | T>A,C,G | 0.05 | missense_variant | RGL3 | 4e-27 | Tier 1: coding |
| rs2301597 | 17 | 45095905 | T>A,C | 0.05 | intron_variant | NMT1 | 7e-27 | Tier 4: intronic/intergenic |
| rs11451130 | 12 | 115116281 | AT>A,ATT | 0.05 | intron_variant | TBX3-AS1 - UBA52P7 | 2e-26 | Tier 4: intronic/intergenic |
| rs12978472 | 19 | 7257979 | C>A,G,T | 0.05 | intron_variant | INSR | 9e-26 | Tier 4: intronic/intergenic |
| rs2137320 | 11 | 1863112 | G>A,C | 0.05 | intron_variant | LSP1 | 1e-25 | Tier 4: intronic/intergenic |
ClinVar germline variants
29 retrieved; paginated sample, class counts are floors:
12 pathogenic, 5 uncertain significance, 4 pathogenic/likely pathogenic, 3 conflicting classifications of pathogenicity, 3 likely pathogenic, 1 benign, 1 conflicting classifications of pathogenicity; risk factor
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 633592 | NM_033440.3(CELA2A):c.361G>A (p.Asp121Asn) | CELA2A | Pathogenic | no assertion criteria provided |
| 633594 | NM_033440.3(CELA2A):c.639+1G>C | CELA2A | Pathogenic | no assertion criteria provided |
| 633595 | NM_033440.3(CELA2A):c.209C>T (p.Thr70Met) | CELA2A | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 24455 | NM_033380.3(COL4A5):c.1871G>A (p.Gly624Asp) | COL4A5 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 2504113 | NM_006587.4(CORIN):c.684dup (p.Met229fs) | CORIN | Pathogenic | criteria provided, single submitter |
| 523249 | GRCh37/hg19 15q11.2(chr15:22765628-23300287) | CYFIP1 | Pathogenic | criteria provided, single submitter |
| 1057 | NM_018122.5(DARS2):c.228-21_228-20delinsC | DARS2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1062 | NM_018122.5(DARS2):c.492+2T>C | DARS2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1170 | NM_000505.4(F12):c.983C>G (p.Thr328Arg) | F12 | Pathogenic | criteria provided, single submitter |
| 523533 | NM_022489.4(INF2):c.658G>A (p.Glu220Lys) | INF2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 373955 | NM_000297.4(PKD2):c.357_364delinsTAGGACG (p.Pro120fs) | LOC129992813 | Pathogenic | criteria provided, single submitter |
| 374107 | NM_001370259.2(MEN1):c.654+1del | MEN1 | Pathogenic | criteria provided, single submitter |
| 827676 | NM_006554.5(MTX2):c.295_296del (p.Ser98_Leu99insTer) | MTX2 | Pathogenic | no assertion criteria provided |
| 374097 | NM_001009944.3(PKD1):c.8311G>A (p.Glu2771Lys) | PKD1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 374102 | NM_001009944.3(PKD1):c.3520C>T (p.Gln1174Ter) | PKD1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 374187 | NM_001009944.3(PKD1):c.11524T>C (p.Trp3842Arg) | PKD1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 633593 | NM_033440.3(CELA2A):c.253C>A (p.Leu85Met) | CELA2A | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 523453 | NM_002473.6(MYH9):c.4271A>G (p.Asp1424Gly) | MYH9 | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 374044 | NM_001009944.3(PKD1):c.9185T>A (p.Val3062Asp) | PKD1 | Likely pathogenic | criteria provided, single submitter |
| 242442 | NM_000092.5(COL4A4):c.2320G>C (p.Gly774Arg) | COL4A4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 255039 | NM_000092.5(COL4A4):c.4217-15T>C | COL4A4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 523324 | NM_000092.5(COL4A4):c.4394G>A (p.Gly1465Asp) | COL4A4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 199044 | NM_000157.4(GBA1):c.1093G>A (p.Glu365Lys) | GBA1 | Conflicting classifications of pathogenicity; risk factor | criteria provided, conflicting classifications |
| 374041 | NM_000092.5(COL4A4):c.3055G>C (p.Glu1019Gln) | COL4A4 | Uncertain significance | criteria provided, single submitter |
| 2570686 | NM_005245.4(FAT1):c.10513A>T (p.Arg3505Trp) | FAT1 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 2570687 | NM_005245.4(FAT1):c.11518G>A (p.Val3840Met) | FAT1 | Uncertain significance | criteria provided, single submitter |
| 1338787 | NM_173598.6(KSR2):c.2512C>T (p.Arg838Cys) | KSR2 | Uncertain significance | criteria provided, single submitter |
| 374128 | NM_016203.4(PRKAG2):c.590C>G (p.Pro197Arg) | PRKAG2 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 18068 | NC_000001.11:g.230710048A>G | AGT | Benign | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 45 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| RIT1 | Orphanet:648 | Noonan syndrome |
| CNNM2 | Orphanet:620363 | Primary hypomagnesemia-generalized seizures-intellectual disability-obesity syndrome |
| RYR2 | Orphanet:293888 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-left variant |
| RYR2 | Orphanet:293899 | Inherited isolated arrhythmogenic ventricular dysplasia, biventricular variant |
| RYR2 | Orphanet:293910 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-right variant |
| RYR2 | Orphanet:3286 | Catecholaminergic polymorphic ventricular tachycardia |
| SALL1 | Orphanet:857 | Townes-Brocks syndrome |
| ATXN2 | Orphanet:803 | Amyotrophic lateral sclerosis |
| ATXN2 | Orphanet:98756 | Spinocerebellar ataxia type 2 |
| TBX3 | Orphanet:3138 | Ulnar-mammary syndrome |
| TBX5 | Orphanet:101016 | Romano-Ward syndrome |
| TBX5 | Orphanet:392 | Holt-Oram syndrome |
| TNNT3 | Orphanet:1146 | Distal arthrogryposis type 1 |
| TNNT3 | Orphanet:1147 | Sheldon-Hall syndrome |
| UMOD | Orphanet:88950 | UMOD-related autosomal dominant tubulointerstitial kidney disease |
| VPS33B | Orphanet:2697 | Arthrogryposis-renal dysfunction-cholestasis syndrome |
| WNT2B | Orphanet:714487 | Congenital diarrhea-chronic gastrointestinal inflammation-ocular dysgenesis syndrome |
| YWHAE | Orphanet:213711 | Endometrial stromal sarcoma |
| YWHAE | Orphanet:217385 | 17p13.3 microduplication syndrome |
| YWHAE | Orphanet:261257 | Distal 17p13.3 microdeletion syndrome |
| YWHAE | Orphanet:457246 | Clear cell sarcoma of kidney |
| YWHAE | Orphanet:531 | Miller-Dieker syndrome |
| CACNA1D | Orphanet:324321 | Sinoatrial node dysfunction and deafness |
| CACNA1D | Orphanet:369929 | Primary hyperaldosteronism-seizures-neurological abnormalities syndrome |
| ABHD16A | Orphanet:631085 | Autosomal recessive spastic paraplegia type 86 |
| SLC44A4 | Orphanet:90635 | Rare autosomal dominant non-syndromic sensorineural deafness type DFNA |
| PRDM8 | Orphanet:324290 | PRDM8-related progressive myoclonus epilepsy |
| PRDM16 | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| PRDM16 | Orphanet:1606 | 1p36 deletion syndrome |
| PRDM16 | Orphanet:54260 | Left ventricular noncompaction |
| CACNB2 | Orphanet:130 | Brugada syndrome |
| RNF213 | Orphanet:2573 | Moyamoya disease |
| CALCRL | Orphanet:363999 | Non-immune hydrops fetalis |
| PLCE1 | Orphanet:656 | Hereditary steroid-resistant nephrotic syndrome |
| BANK1 | Orphanet:536 | Systemic lupus erythematosus |
| CORIN | Orphanet:275555 | Preeclampsia |
| CUX2 | Orphanet:2382 | Lennox-Gastaut syndrome |
| CHRM3 | Orphanet:2970 | Prune belly syndrome |
| CCDC88C | Orphanet:269510 | Congenital non-communicating hydrocephalus |
| CCDC88C | Orphanet:423275 | Spinocerebellar ataxia type 40 |
| SLC39A8 | Orphanet:468699 | SLC39A8-CDG |
| PHACTR1 | Orphanet:697160 | Infantile epileptic spasms syndrome |
| SBF2 | Orphanet:99956 | Charcot-Marie-Tooth disease type 4B2 |
| COL4A2 | Orphanet:36383 | COL4A1/2-related familial vascular leukoencephalopathy |
| COL4A2 | Orphanet:99810 | Familial porencephaly |
Cohort genes → proteins
75 cohort genes, 74 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 72 |
| multi_evidence | 3 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| RIT1 | HGNC:10023 | ENSG00000143622 | Q92963 | GTP-binding protein Rit1 | gwas |
| CNNM2 | HGNC:103 | ENSG00000148842 | Q9H8M5 | Metal transporter CNNM2 | gwas |
| RYR2 | HGNC:10484 | ENSG00000198626 | Q92736 | Ryanodine receptor 2 | gwas |
| SALL1 | HGNC:10524 | ENSG00000103449 | Q9NSC2 | Sal-like protein 1 | gwas |
| ATXN2 | HGNC:10555 | ENSG00000204842 | Q99700 | Ataxin-2 | gwas |
| SEMA7A | HGNC:10741 | ENSG00000138623 | O75326 | Semaphorin-7A | gwas |
| SLC22A7 | HGNC:10971 | ENSG00000137204 | Q9Y694 | Solute carrier family 22 member 7 | gwas |
| SLC30A1 | HGNC:11012 | ENSG00000170385 | Q9Y6M5 | Proton-coupled zinc antiporter SLC30A1 | gwas |
| SLC4A7 | HGNC:11033 | ENSG00000033867 | Q9Y6M7 | Sodium bicarbonate cotransporter 3 | gwas |
| TARBP1 | HGNC:11568 | ENSG00000059588 | Q13395 | tRNA (guanosine(18)-2’-O)-methyltransferase TARBP1 | gwas |
| TBX18 | HGNC:11595 | ENSG00000112837 | O95935 | T-box transcription factor TBX18 | gwas |
| TBX2 | HGNC:11597 | ENSG00000121068 | Q13207 | T-box transcription factor TBX2 | gwas |
| TBX3 | HGNC:11602 | ENSG00000135111 | O15119 | T-box transcription factor TBX3 | gwas |
| TBX5 | HGNC:11604 | ENSG00000089225 | Q99593 | T-box transcription factor TBX5 | gwas |
| TCF21 | HGNC:11632 | ENSG00000118526 | O43680 | Transcription factor 21 | gwas |
| TMOD4 | HGNC:11874 | ENSG00000163157 | Q9NZQ9 | Tropomodulin-4 | gwas |
| TNKS | HGNC:11941 | ENSG00000173273 | O95271 | Poly [ADP-ribose] polymerase tankyrase-1 | gwas |
| TNNT3 | HGNC:11950 | ENSG00000130595 | P45378 | Troponin T, fast skeletal muscle | gwas |
| UMOD | HGNC:12559 | ENSG00000169344 | P07911 | Uromodulin | gwas |
| VPS33B | HGNC:12712 | ENSG00000184056 | Q9H267 | Vacuolar protein sorting-associated protein 33B | gwas |
| WNT2B | HGNC:12781 | ENSG00000134245 | Q93097 | Protein Wnt-2b | gwas |
| YES1 | HGNC:12841 | ENSG00000176105 | P07947 | Tyrosine-protein kinase Yes | gwas |
| YWHAE | HGNC:12851 | ENSG00000108953 | P62258 | 14-3-3 protein epsilon | gwas |
| ZNF107 | HGNC:12887 | ENSG00000196247 | Q9UII5 | Zinc finger protein 107 | gwas |
| RIBC2 | HGNC:13241 | ENSG00000128408 | Q9H4K1 | RIB43A-like with coiled-coils protein 2 | gwas |
| FIGN | HGNC:13285 | ENSG00000182263 | Q5HY92 | Fidgetin | gwas |
| MS4A6A | HGNC:13375 | ENSG00000110077 | Q9H2W1 | Membrane-spanning 4-domains subfamily A member 6A | gwas |
| NID2 | HGNC:13389 | ENSG00000087303 | Q14112 | Nidogen-2 | gwas |
| ZNF318 | HGNC:13578 | ENSG00000171467 | Q5VUA4 | Zinc finger protein 318 | gwas |
| CYFIP1 | HGNC:13759 | ENSG00000273749 | Q7L576 | Cytoplasmic FMR1-interacting protein 1 | clinvar |
| DMRTA1 | HGNC:13826 | ENSG00000176399 | Q5VZB9 | Doublesex- and mab-3-related transcription factor A1 | gwas |
| CACNA1D | HGNC:1391 | ENSG00000157388 | Q01668 | Voltage-dependent L-type calcium channel subunit alpha-1D | gwas |
| PRRC2A | HGNC:13918 | ENSG00000204469 | P48634 | Protein PRRC2A | gwas |
| ABHD16A | HGNC:13921 | ENSG00000204427 | O95870 | Phosphatidylserine lipase ABHD16A | gwas |
| MPIG6B | HGNC:13937 | ENSG00000204420 | O95866 | Megakaryocyte and platelet inhibitory receptor G6b | gwas |
| SLC44A4 | HGNC:13941 | ENSG00000204385 | Q53GD3 | Choline transporter-like protein 4 | gwas |
| PRDM8 | HGNC:13993 | ENSG00000152784 | Q9NQV8 | PR domain zinc finger protein 8 | gwas |
| PRDM16 | HGNC:14000 | ENSG00000142611 | Q9HAZ2 | Histone-lysine N-methyltransferase PRDM16 | gwas |
| CACNB2 | HGNC:1402 | ENSG00000165995 | Q08289 | Voltage-dependent L-type calcium channel subunit beta-2 | gwas |
| RNF213 | HGNC:14539 | ENSG00000173821 | Q63HN8 | E3 ubiquitin-protein ligase RNF213 | gwas |
| OR4X1 | HGNC:14854 | ENSG00000176567 | Q8NH49 | Olfactory receptor 4X1 | gwas |
| CAPZA1 | HGNC:1488 | ENSG00000116489 | P52907 | F-actin-capping protein subunit alpha-1 | gwas |
| OR5B12 | HGNC:15432 | ENSG00000172362 | Q96R08 | Olfactory receptor 5B12 | gwas |
| ALDH1A2 | HGNC:15472 | ENSG00000128918 | O94788 | Retinal dehydrogenase 2 | gwas |
| ZP4 | HGNC:15770 | ENSG00000116996 | Q12836 | Zona pellucida sperm-binding protein 4 | gwas |
| ULK4 | HGNC:15784 | ENSG00000168038 | Q96C45 | Serine/threonine-protein kinase ULK4 | gwas |
| ZNF831 | HGNC:16167 | ENSG00000124203 | Q5JPB2 | Zinc finger protein 831 | gwas |
| LINC02871 | HGNC:16180 | ENSG00000125899 | long intergenic non-protein coding RNA 2871 | gwas | |
| SOX6 | HGNC:16421 | ENSG00000110693 | P35712 | Transcription factor SOX-6 | gwas |
| SORCS2 | HGNC:16698 | ENSG00000184985 | Q96PQ0 | VPS10 domain-containing receptor SorCS2 | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| RIT1 | GTP-binding protein Rit1 | Plays a crucial role in coupling NGF stimulation to the activation of both EPHB2 and MAPK14 signaling pathways and in NGF-dependent neuronal differentiation. |
| CNNM2 | Metal transporter CNNM2 | Divalent metal cation transporter. |
| RYR2 | Ryanodine receptor 2 | Cytosolic calcium-activated calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytosol and thereby plays a key role in triggering cardiac muscle contraction. |
| SALL1 | Sal-like protein 1 | Transcriptional repressor involved in organogenesis. |
| ATXN2 | Ataxin-2 | Involved in EGFR trafficking, acting as negative regulator of endocytic EGFR internalization at the plasma membrane. |
| SEMA7A | Semaphorin-7A | Plays an important role in integrin-mediated signaling and functions both in regulating cell migration and immune responses. |
| SLC22A7 | Solute carrier family 22 member 7 | Functions as a Na(+)-independent bidirectional multispecific transporter. |
| SLC30A1 | Proton-coupled zinc antiporter SLC30A1 | Zinc ion:proton antiporter that could function at the plasma membrane mediating zinc efflux from cells against its electrochemical gradient protecting them from intracellular zinc accumulation and toxicity. |
| SLC4A7 | Sodium bicarbonate cotransporter 3 | Electroneutral sodium- and bicarbonate-dependent cotransporter with a Na(+):HCO3(-) 1:1 stoichiometry. |
| TARBP1 | tRNA (guanosine(18)-2’-O)-methyltransferase TARBP1 | S-adenosyl-L-methionine-dependent 2’-O-ribose methyltransferase that catalyzes the formation of 2’-O-methylguanosine at position 18 (Gm18) in a subset of tRNA. |
| TBX18 | T-box transcription factor TBX18 | Acts as a transcriptional repressor involved in developmental processes of a variety of tissues and organs, including the heart and coronary vessels, the ureter and the vertebral column. |
| TBX2 | T-box transcription factor TBX2 | Transcription factor which acts as a transcriptional repressor. |
| TBX3 | T-box transcription factor TBX3 | Transcriptional repressor involved in developmental processes. |
| TBX5 | T-box transcription factor TBX5 | DNA-binding protein that regulates the transcription of several genes and is involved in heart development and limb pattern formation. |
| TCF21 | Transcription factor 21 | Involved in epithelial-mesenchymal interactions in kidney and lung morphogenesis that include epithelial differentiation and branching morphogenesis. |
| TMOD4 | Tropomodulin-4 | Blocks the elongation and depolymerization of the actin filaments at the pointed end. |
| TNKS | Poly [ADP-ribose] polymerase tankyrase-1 | Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. |
| TNNT3 | Troponin T, fast skeletal muscle | Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity. |
| UMOD | Uromodulin | Functions in biogenesis and organization of the apical membrane of epithelial cells of the thick ascending limb of Henle’s loop (TALH), where it promotes formation of complex filamentous gel-like structure that may play a role in the water… |
| VPS33B | Vacuolar protein sorting-associated protein 33B | May play a role in vesicle-mediated protein trafficking to lysosomal compartments and in membrane docking/fusion reactions of late endosomes/lysosomes. |
| WNT2B | Protein Wnt-2b | Ligand for members of the frizzled family of seven transmembrane receptors. |
| YES1 | Tyrosine-protein kinase Yes | Non-receptor protein tyrosine kinase that is involved in the regulation of cell growth and survival, apoptosis, cell-cell adhesion, cytoskeleton remodeling, and differentiation. |
| YWHAE | 14-3-3 protein epsilon | Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. |
| ZNF107 | Zinc finger protein 107 | May be involved in transcriptional regulation. |
| RIBC2 | RIB43A-like with coiled-coils protein 2 | Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia axoneme, which is required for motile cilia beating. |
| FIGN | Fidgetin | ATP-dependent microtubule severing protein. |
| MS4A6A | Membrane-spanning 4-domains subfamily A member 6A | May be involved in signal transduction as a component of a multimeric receptor complex. |
| NID2 | Nidogen-2 | Cell adhesion glycoprotein which is widely distributed in basement membranes. |
| ZNF318 | Zinc finger protein 318 | Acts as a transcriptional corepressor for AR-mediated transactivation function. |
| CYFIP1 | Cytoplasmic FMR1-interacting protein 1 | Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. |
| CACNA1D | Voltage-dependent L-type calcium channel subunit alpha-1D | Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene exp… |
| PRRC2A | Protein PRRC2A | May play a role in the regulation of pre-mRNA splicing. |
| ABHD16A | Phosphatidylserine lipase ABHD16A | Phosphatidylserine (PS) lipase that mediates the hydrolysis of phosphatidylserine to generate lysophosphatidylserine (LPS). |
| MPIG6B | Megakaryocyte and platelet inhibitory receptor G6b | Inhibitory receptor that acts as a critical regulator of hematopoietic lineage differentiation, megakaryocyte function and platelet production. |
| SLC44A4 | Choline transporter-like protein 4 | Choline transporter that plays a role in the choline-acetylcholine system and is required to the efferent innervation of hair cells in the olivocochlear bundle for the maintenance of physiological function of outer hair cells and the prote… |
| PRDM8 | PR domain zinc finger protein 8 | Probable histone methyltransferase, preferentially acting on ‘Lys-9’ of histone H3. |
| PRDM16 | Histone-lysine N-methyltransferase PRDM16 | Transcription regulator that acts both as a histone methyltransferase or chromatin adapter, depending on the context. |
| CACNB2 | Voltage-dependent L-type calcium channel subunit beta-2 | Beta subunit of voltage-dependent calcium channels which contributes to the function of the calcium channel by increasing peak calcium current. |
| RNF213 | E3 ubiquitin-protein ligase RNF213 | Atypical E3 ubiquitin ligase that can catalyze ubiquitination of both proteins and lipids, and which is involved in various processes, such as lipid metabolism, angiogenesis and cell-autonomous immunity. |
| OR4X1 | Olfactory receptor 4X1 | Odorant receptor. |
| CAPZA1 | F-actin-capping protein subunit alpha-1 | F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. |
| OR5B12 | Olfactory receptor 5B12 | Odorant receptor. |
| ALDH1A2 | Retinal dehydrogenase 2 | Catalyzes the NAD-dependent oxidation of aldehyde substrates, such as all-trans-retinal and all-trans-13,14-dihydroretinal, to their corresponding carboxylic acids, all-trans-retinoate and all-trans-13,14-dihydroretinoate, respectively. |
| ZP4 | Zona pellucida sperm-binding protein 4 | Component of the zona pellucida, an extracellular matrix surrounding oocytes which mediates sperm binding, induction of the acrosome reaction and prevents post-fertilization polyspermy. |
| ULK4 | Serine/threonine-protein kinase ULK4 | May be involved in the remodeling of cytoskeletal components, such as alpha-tubulin, and in this way regulates neurite branching and elongation, as well as cell motility. |
| SOX6 | Transcription factor SOX-6 | Transcription factor that plays a key role in several developmental processes, including neurogenesis, chondrocytes differentiation and cartilage formation. |
| SORCS2 | VPS10 domain-containing receptor SorCS2 | The heterodimer formed by NGFR and SORCS2 functions as receptor for the precursor forms of NGF (proNGF) and BDNF (proBDNF). |
| CALCRL | Calcitonin gene-related peptide type 1 receptor | G protein-coupled receptor which specificity is determined by its interaction with receptor-activity-modifying proteins (RAMPs). |
| SWAP70 | Switch-associated protein 70 | Phosphatidylinositol 3,4,5-trisphosphate-dependent guanine nucleotide exchange factor (GEF) which, independently of RAS, transduces signals from tyrosine kinase receptors to RAC. |
| PLCE1 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 | The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. |
Protein-family classification
Druggable: 21 · Difficult: 23 · Unknown: 31 · Druggable fraction: 0.28
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Transcription factor | 16 | 1.8× | 0.180 |
| Ion channel | 2 | 3.0× | 0.400 |
| Antibody/Immunoglobulin | 5 | 1.9× | 0.400 |
| Scaffold/PPI | 7 | 1.6× | 0.400 |
| Transporter | 2 | 2.1× | 0.552 |
| GPCR | 4 | 1.3× | 0.702 |
| Kinase | 3 | 1.1× | 0.803 |
| Phosphatase | 1 | 1.1× | 0.817 |
| Other/Unknown | 31 | 0.7× | 0.996 |
| Protease | 1 | 0.5× | 0.996 |
| Enzyme (other) | 3 | 0.5× | 0.996 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| RIT1 | Other/Unknown | no | Small_GTPase, Small_GTP-bd, Small_GTPase_Ras-type | |
| CNNM2 | Other/Unknown | no | CBS_dom, CNNM, RmlC-like_jellyroll | |
| RYR2 | Ion channel | yes | RIH_dom, B30.2/SPRY, EF_hand_dom | |
| SALL1 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Sal_C2H2-zinc-finger | |
| ATXN2 | Other/Unknown | no | LsmAD_domain, PAM2_motif, LSM_dom_sf | |
| SEMA7A | Antibody/Immunoglobulin | yes | Semap_dom, Plexin_repeat, Ig-like_dom | |
| SLC22A7 | Transporter | yes | Orgcat_transp/SVOP, MFS, MFS_dom | |
| SLC30A1 | Other/Unknown | no | Cation_efflux, Cation_efflux_TMD_sf, Cation_efflux_CTD | |
| SLC4A7 | Other/Unknown | no | HCO3_transpt_euk, HCO3_transpt-like_TM_dom, Band3_cytoplasmic_dom | |
| TARBP1 | Enzyme (other) | yes | 2.1.1.34 | SpoU_MeTrfase, ARM-type_fold, TARBP1 |
| TBX18 | Transcription factor | no | TF_T-box, p53-like_TF_DNA-bd_sf, TF_T-box_CS | |
| TBX2 | Transcription factor | no | TF_T-box, TF_Brachyury, p53-like_TF_DNA-bd_sf | |
| TBX3 | Transcription factor | no | TF_T-box, p53-like_TF_DNA-bd_sf, TF_T-box_CS | |
| TBX5 | Transcription factor | no | TF_T-box, p53-like_TF_DNA-bd_sf, TF_T-box_CS | |
| TCF21 | Transcription factor | no | bHLH_dom, HLH_DNA-bd_sf, E-box_TF_Regulators | |
| TMOD4 | Other/Unknown | no | TMOD, LRR_dom_sf | |
| TNKS | Scaffold/PPI | no | 2.4.2.30 | SAM, Ankyrin_rpt, Poly(ADP-ribose)pol_cat_dom |
| TNNT3 | Other/Unknown | no | Troponin, TNNT, Troponin_sf | |
| UMOD | Other/Unknown | no | EGF-type_Asp/Asn_hydroxyl_site, EGF, ZP_dom | |
| VPS33B | Other/Unknown | no | Sec1-like, Sec1-like_dom2, Sec1-like_sf | |
| WNT2B | Other/Unknown | no | Wnt, Wnt2, Wnt_CS | |
| YES1 | Kinase | yes | 2.7.10.2 | Prot_kinase_dom, SH2, Ser-Thr/Tyr_kinase_cat_dom |
| YWHAE | Other/Unknown | no | 14-3-3, 14-3-3_CS, 14-3-3_domain | |
| ZNF107 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Zinc_finger_PRDM4/PRDM1/PRDM14 | |
| RIBC2 | Other/Unknown | no | RIB43A | |
| FIGN | Other/Unknown | no | AAA+_ATPase, ATPase_AAA_core, ATPase_AAA_CS | |
| MS4A6A | Other/Unknown | no | CD20-like_TM, MS4A | |
| NID2 | Other/Unknown | no | LDLR_classB_rpt, EGF-type_Asp/Asn_hydroxyl_site, Thyroglobulin_1 | |
| ZNF318 | Transcription factor | no | Matrin/U1-like-C_Znf_C2H2, Znf318-like | |
| CYFIP1 | Other/Unknown | no | Cytoplasmic_FMR1-int, CYRIA/CYRIB_Rac1-bd | |
| DMRTA1 | Other/Unknown | no | DM_DNA-bd, DMA, UBA-like_sf | |
| CACNA1D | Ion channel | yes | VDCCAlpha1, VDCC_L_a1su, LVDCC_a1dsu | |
| PRRC2A | Other/Unknown | no | BAT2_N, PRRC2 | |
| ABHD16A | Other/Unknown | no | AB_hydrolase_1, AB_hydrolase_fold, ABHD16_N | |
| MPIG6B | Other/Unknown | no | G6B, G6B_V-set | |
| SLC44A4 | Other/Unknown | no | Choline_transptr-like | |
| PRDM8 | Transcription factor | no | SET_dom, Znf_C2H2_type, Znf_C2H2_sf | |
| PRDM16 | Transcription factor | no | 2.1.1.367 | SET_dom, Znf_C2H2_type, Znf_C2H2_sf |
| CACNB2 | Scaffold/PPI | no | VDCC_L_bsu, SH3_domain, VDCC_L_b2su | |
| RNF213 | Transcription factor | no | Znf_RING, AAA+_ATPase, Znf_RING/FYVE/PHD | |
| OR4X1 | GPCR | yes | GPCR_Rhodpsn, Olfact_rcpt, GPCR_Rhodpsn_7TM | |
| CAPZA1 | Other/Unknown | no | CapZ_alpha, F-actin_cap_asu_CS, CapZ_alpha/beta | |
| OR5B12 | GPCR | yes | GPCR_Rhodpsn, Olfact_rcpt, GPCR_Rhodpsn_7TM | |
| ALDH1A2 | Enzyme (other) | yes | 1.2.1.36 | Aldehyde_DH_dom, Ald_DH_CS_CYS, Ald_DH/histidinol_DH |
| ZP4 | Antibody/Immunoglobulin | yes | P_trefoil_dom, ZP_dom, P_trefoil_CS | |
| ULK4 | Kinase | yes | Prot_kinase_dom, Kinase-like_dom_sf, ARM-like | |
| ZNF831 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf | |
| LINC02871 | Other/Unknown | no | ||
| SOX6 | Transcription factor | no | HMG_box_dom, HMG_box_dom_sf, SOX/SOX-like_TF | |
| SORCS2 | Antibody/Immunoglobulin | yes | PKD_dom, VPS10, Ig-like_fold |
Expression context
Cohort genes with no expression data: 0.
66 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 1 |
| moderate (6-20) | 2 |
| broad (>20) | 72 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| buccal mucosa cell | 9 |
| oocyte | 6 |
| secondary oocyte | 6 |
| Brodmann (1909) area 23 | 6 |
| ventricular zone | 5 |
| colonic epithelium | 5 |
| middle temporal gyrus | 5 |
| cortical plate | 5 |
| granulocyte | 5 |
| monocyte | 4 |
| calcaneal tendon | 4 |
| right uterine tube | 4 |
| right lung | 4 |
| lymph node | 4 |
| left testis | 4 |
| right testis | 4 |
| male germ line stem cell (sensu Vertebrata) in testis | 4 |
| leukocyte | 3 |
| mononuclear cell | 3 |
| spleen | 3 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| RIT1 | 268 | ubiquitous | marker | monocyte, mononuclear cell, leukocyte |
| CNNM2 | 234 | ubiquitous | marker | secondary oocyte, oocyte, right adrenal gland |
| RYR2 | 210 | broad | marker | heart right ventricle, left ventricle myocardium, myocardium |
| SALL1 | 195 | broad | marker | ventricular zone, inferior vagus X ganglion, renal medulla |
| ATXN2 | 286 | ubiquitous | marker | buccal mucosa cell, colonic epithelium, olfactory bulb |
| SEMA7A | 136 | ubiquitous | yes | spleen, C1 segment of cervical spinal cord, primary visual cortex |
| SLC22A7 | 170 | tissue_specific | yes | right lobe of liver, liver, adult mammalian kidney |
| SLC30A1 | 287 | ubiquitous | marker | jejunal mucosa, choroid plexus epithelium, caput epididymis |
| SLC4A7 | 284 | ubiquitous | marker | oocyte, duodenum, calcaneal tendon |
| TARBP1 | 290 | ubiquitous | marker | right hemisphere of cerebellum, right uterine tube, cerebellar hemisphere |
| TBX18 | 162 | ubiquitous | marker | right coronary artery, popliteal artery, tibial artery |
| TBX2 | 236 | ubiquitous | marker | right lung, right coronary artery, upper lobe of left lung |
| TBX3 | 243 | ubiquitous | marker | right adrenal gland cortex, right adrenal gland, adrenal cortex |
| TBX5 | 129 | broad | marker | tendon of biceps brachii, cardiac muscle of right atrium, buccal mucosa cell |
| TCF21 | 175 | broad | marker | primordial germ cell in gonad, right lung, upper lobe of left lung |
| TMOD4 | 176 | tissue_specific | yes | vastus lateralis, quadriceps femoris, skeletal muscle tissue of rectus abdominis |
| TNKS | 295 | ubiquitous | yes | middle temporal gyrus, medial globus pallidus, Brodmann (1909) area 23 |
| TNNT3 | 135 | broad | marker | hindlimb stylopod muscle, skeletal muscle tissue, gastrocnemius |
| UMOD | 104 | tissue_specific | marker | renal medulla, adult organism, adult mammalian kidney |
| VPS33B | 277 | ubiquitous | yes | pancreatic ductal cell, Brodmann (1909) area 23, middle temporal gyrus |
| WNT2B | 231 | broad | marker | germinal epithelium of ovary, buccal mucosa cell, parietal pleura |
| YES1 | 295 | ubiquitous | marker | secondary oocyte, oocyte, jejunal mucosa |
| YWHAE | 155 | ubiquitous | marker | superior frontal gyrus, ventricular zone, cortical plate |
| ZNF107 | 253 | ubiquitous | marker | secondary oocyte, oocyte, lymph node |
| RIBC2 | 175 | broad | marker | bronchial epithelial cell, epithelium of bronchus, right uterine tube |
| FIGN | 225 | ubiquitous | marker | buccal mucosa cell, dorsal root ganglion, endothelial cell |
| MS4A6A | 259 | broad | marker | monocyte, mononuclear cell, leukocyte |
| NID2 | 236 | ubiquitous | marker | cartilage tissue, stromal cell of endometrium, tibia |
| ZNF318 | 274 | ubiquitous | marker | left testis, right testis, testis |
| CYFIP1 | 295 | ubiquitous | marker | esophagus squamous epithelium, germinal epithelium of ovary, epithelium of esophagus |
Protein interactions among cohort
Intra-cohort edges: 21.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| CDH17 | 4,513 |
| ALDH1A2 | 4,289 |
| YES1 | 3,542 |
| ATXN2 | 3,360 |
| RIT1 | 3,298 |
| YWHAE | 3,177 |
| CAPZA1 | 3,048 |
| TNKS | 2,828 |
| COL4A2 | 2,746 |
| ZNF318 | 2,705 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ABHD16A | PRRC2A | string_interaction |
| ALDH1A2 | TBX18 | string_interaction |
| ALDH1A2 | TCF21 | string_interaction |
| ATXN2 | CUX2 | string_interaction |
| CACNA1D | CACNB2 | string_interaction |
| CACNA1D | LRRC7 | string_interaction |
| CACNA1D | RYR2 | string_interaction |
| CAPZA1 | TMOD4 | string_interaction |
| CHRM3 | SLC4A7 | biogrid_interaction |
| COL4A2 | NID2 | string_interaction |
| CYFIP1 | PRDM16 | biogrid_interaction |
| KSR2 | RIT1 | string_interaction |
| KSR2 | YWHAE | biogrid_interaction |
| PRDM16 | PRDM8 | string_interaction |
| PRDM16 | SOX6 | biogrid_interaction, intact |
| SALL1 | TBX5 | string_interaction |
| SEMA7A | SLC12A9 | biogrid_interaction, intact |
| SLC30A1 | SLC39A8 | string_interaction |
| TBX18 | TCF21 | string_interaction |
| TBX3 | TBX5 | string_interaction |
| TBX5 | YES1 | string_interaction |
Structural data
PDB: 40 · AlphaFold-only: 34 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| TNKS | O95271 | 42 |
| RYR2 | Q92736 | 26 |
| CALCRL | Q16602 | 25 |
| SLC30A1 | Q9Y6M5 | 12 |
| YWHAE | P62258 | 11 |
| UMOD | P07911 | 10 |
| CAPZA1 | P52907 | 10 |
| KSR2 | Q6VAB6 | 9 |
| CNNM2 | Q9H8M5 | 7 |
| ALDH1A2 | O94788 | 7 |
| CACNA1D | Q01668 | 6 |
| PHACTR1 | Q9C0D0 | 6 |
| CYFIP1 | Q7L576 | 5 |
| CHRM3 | P20309 | 5 |
| TBX5 | Q99593 | 4 |
| RNF213 | Q63HN8 | 4 |
| NCR3 | O14931 | 4 |
| COL4A2 | P08572 | 4 |
| RIT1 | Q92963 | 3 |
| CACNB2 | Q08289 | 3 |
| PLCE1 | Q9P212 | 3 |
| CDH17 | Q12864 | 3 |
| MTCH2 | Q9Y6C9 | 3 |
| CUX2 | O14529 | 3 |
| RIBC2 | Q9H4K1 | 2 |
| PRDM16 | Q9HAZ2 | 2 |
| ULK4 | Q96C45 | 2 |
| LRRC7 | Q96NW7 | 2 |
| ATXN2 | Q99700 | 1 |
| SEMA7A | O75326 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| VPS33B | Q9H267 | 91.82 |
| ABHD16A | O95870 | 89.90 |
| OR5B12 | Q96R08 | 89.47 |
| OR4X1 | Q8NH49 | 88.10 |
| WNT2B | Q93097 | 86.85 |
| TMOD4 | Q9NZQ9 | 86.28 |
| SLC22A7 | Q9Y694 | 84.93 |
| SLC44A4 | Q53GD3 | 83.79 |
| SLC12A9 | Q9BXP2 | 82.25 |
| FSTL4 | Q6MZW2 | 81.18 |
| TNNT3 | P45378 | 77.99 |
| NBEAL1 | Q6ZS30 | 75.20 |
| ZP4 | Q12836 | 74.90 |
| CRIP3 | Q6Q6R5 | 74.81 |
| NID2 | Q14112 | 74.40 |
| ZNF107 | Q9UII5 | 74.23 |
| MS4A6A | Q9H2W1 | 73.84 |
| SBF2 | Q86WG5 | 73.74 |
| SLC39A8 | Q9C0K1 | 73.46 |
| CORIN | Q9Y5Q5 | 70.20 |
| MBIP | Q9NS73 | 68.83 |
| TCF21 | O43680 | 66.67 |
| CCDC88C | Q9P219 | 65.69 |
| FIGN | Q5HY92 | 62.06 |
| BANK1 | Q8NDB2 | 61.25 |
| TBX18 | O95935 | 61.09 |
| TBX2 | Q13207 | 58.13 |
| DMRTA1 | Q5VZB9 | 57.14 |
| SOX6 | P35712 | 56.48 |
| PRDM8 | Q9NQV8 | 55.64 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 646. Enrichment computed across 206 evidence-associated genes (133 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 133 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| NCAM1 interactions | 7 | 13.1× | 6e-04 | CACNA1D, CACNB2, COL4A2, COL4A4, COL4A5, COL6A3, COL6A5 |
| Glucocorticoid biosynthesis | 4 | 26.4× | 0.003 | CYP11B1, CYP11B2, CYP17A1, CYP21A2 |
| Signaling by PDGF | 6 | 11.4× | 0.003 | COL4A2, COL4A4, COL4A5, COL6A3, COL6A5, FURIN |
| Sensory processing of sound | 5 | 11.6× | 0.010 | CACNA1D, CACNB2, CAPZA1, MYH9, ATP2B1 |
| Collagen degradation | 6 | 7.9× | 0.014 | COL4A2, COL4A4, COL4A5, COL6A3, COL6A5, FURIN |
| Collagen chain trimerization | 5 | 9.8× | 0.016 | COL4A2, COL4A4, COL4A5, COL6A3, COL6A5 |
| Muscle contraction | 8 | 4.6× | 0.030 | RYR2, TBX5, CACNB2, ALDH2, KCNK3, KCNK5, MYL2, ATP2B1 |
| Laminin interactions | 4 | 11.4× | 0.031 | NID2, COL4A2, COL4A4, COL4A5 |
| Assembly of collagen fibrils and other multimeric structures | 5 | 7.5× | 0.037 | COL4A2, COL4A4, COL4A5, COL6A3, COL6A5 |
| Anchoring fibril formation | 3 | 17.2× | 0.041 | COL4A2, COL4A4, COL4A5 |
| Fibronectin matrix formation | 3 | 12.9× | 0.061 | COL4A2, COL4A4, COL4A5 |
| Crosslinking of collagen fibrils | 3 | 12.9× | 0.061 | COL4A2, COL4A4, COL4A5 |
| Signaling by ALK in cancer | 4 | 8.2× | 0.061 | RNF213, MCL1, MOV10, MYH9 |
| Collagen biosynthesis and modifying enzymes | 5 | 6.4× | 0.061 | COL4A2, COL4A4, COL4A5, COL6A3, COL6A5 |
| Sensory processing of sound by inner hair cells of the cochlea | 5 | 6.1× | 0.061 | CACNA1D, CACNB2, CAPZA1, MYH9, ATP2B1 |
| Cardiac conduction | 6 | 4.9× | 0.061 | RYR2, TBX5, CACNB2, KCNK3, KCNK5, ATP2B1 |
| ECM proteoglycans | 5 | 5.7× | 0.072 | COL4A2, COL4A4, COL4A5, COL6A3, COL6A5 |
| Attachment of bacteria to epithelial cells | 3 | 11.2× | 0.083 | COL4A2, COL4A4, COL4A5 |
| Phase I - Functionalization of compounds | 4 | 6.6× | 0.100 | ADH7, CYP11B1, CYP11B2, ALDH2 |
| Integrin cell surface interactions | 5 | 5.0× | 0.100 | COL4A2, COL4A4, COL4A5, COL6A3, COL6A5 |
| Mineralocorticoid biosynthesis | 2 | 21.5× | 0.108 | CYP11B2, CYP21A2 |
| Synthesis of IP3 and IP4 in the cytosol | 3 | 9.5× | 0.108 | PLCE1, PLCB2, PLCD3 |
| Endogenous sterols | 3 | 8.9× | 0.127 | CYP11B1, CYP11B2, CYP21A2 |
| Acetylcholine regulates insulin secretion | 2 | 17.2× | 0.147 | CHRM3, PLCB2 |
| CD163 mediating an anti-inflammatory response | 2 | 17.2× | 0.147 | MYH9, FURIN |
| Integration of energy metabolism | 4 | 5.3× | 0.171 | CACNA1D, CACNB2, CHRM3, PRKAG2 |
| Ethanol oxidation | 2 | 14.3× | 0.197 | ADH7, ALDH2 |
| Striated Muscle Contraction | 3 | 7.0× | 0.200 | TMOD4, TNNT3, MYL2 |
| NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux | 3 | 7.0× | 0.200 | KDM4A, MOV10, NR1H3 |
| Metabolic disorders of biological oxidation enzymes | 2 | 13.2× | 0.208 | CYP11B1, CYP11B2 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 182 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| cortisol biosynthetic process | 4 | 46.3× | 0.001 | CYP11B1, CYP11B2, CYP17A1, CYP21A2 |
| glucocorticoid biosynthetic process | 4 | 33.7× | 0.003 | CYP11B1, CYP11B2, CYP17A1, CYP21A2 |
| angiogenesis | 13 | 4.5× | 0.004 | RNF213, CALCRL, COL4A2, ENPEP, EPHB3, HOXA3, HOXB3, CXCL8 (+5 more) |
| regulation of blood pressure | 7 | 8.5× | 0.007 | UMOD, CORIN, CYP11B1, AGT, GUCY1A1, NPR3, ATP2B1 |
| smooth muscle cell differentiation | 4 | 19.5× | 0.013 | TBX18, TBX2, TBX3, NPNT |
| ureteric peristalsis | 2 | 92.6× | 0.029 | TBX2, TBX3 |
| atrioventricular bundle cell differentiation | 2 | 61.7× | 0.037 | TBX3, TBX5 |
| specification of animal organ position | 2 | 61.7× | 0.037 | TBX3, HOXA3 |
| mammary placode formation | 2 | 61.7× | 0.037 | TBX2, TBX3 |
| regulation of ribonuclease activity | 2 | 61.7× | 0.037 | OAS3, PDE3A |
| cardiac jelly development | 2 | 61.7× | 0.037 | TBX2, TBX3 |
| nitric oxide-cGMP-mediated signaling | 3 | 25.2× | 0.037 | AGT, GUCY1A1, GUCY1B1 |
| glomerulus development | 3 | 21.4× | 0.037 | TCF21, PLCE1, ENPEP |
| negative regulation of cytosolic calcium ion concentration | 3 | 21.4× | 0.037 | KCNK3, ATP2B1, OPRM1 |
| cell fate specification | 4 | 11.6× | 0.037 | TBX18, TBX2, TBX3, TBX5 |
| adherens junction organization | 4 | 11.2× | 0.039 | CDH13, CDH17, CSK, NUMB |
| embryonic forelimb morphogenesis | 4 | 10.9× | 0.039 | TBX3, TBX5, ALDH1A2, HOXA9 |
| positive regulation of MAPK cascade | 9 | 4.0× | 0.039 | BANK1, KSR2, LPAR1, EDN3, FGF5, GRM5, IGFBP3, INSR (+1 more) |
| calcium ion transport | 6 | 6.0× | 0.040 | RYR2, CACNA1D, CACNB2, CALCRL, HOXA3, PKD1 |
| mineralocorticoid biosynthetic process | 2 | 46.3× | 0.041 | CYP11B2, CYP21A2 |
| glossopharyngeal nerve morphogenesis | 2 | 46.3× | 0.041 | HOXA3, HOXB3 |
| regulation of renal sodium excretion | 2 | 46.3× | 0.041 | CORIN, AGT |
| response to oxygen levels | 2 | 46.3× | 0.041 | GUCY1A1, GUCY1B1 |
| metanephric ascending thin limb development | 2 | 46.3× | 0.041 | UMOD, PKD1 |
| atrioventricular canal morphogenesis | 2 | 46.3× | 0.041 | TBX2, TBX3 |
| embryonic digestive tract development | 3 | 16.3× | 0.043 | SALL1, ALDH1A2, CXCL8 |
| positive regulation of smooth muscle contraction | 3 | 15.4× | 0.050 | CHRM3, NPNT, EDN3 |
| aldosterone biosynthetic process | 2 | 37.0× | 0.054 | CYP11B1, CYP11B2 |
| cadmium ion transmembrane transport | 2 | 37.0× | 0.054 | SLC30A1, SLC39A8 |
| positive regulation of the force of heart contraction | 2 | 37.0× | 0.054 | RYR2, MYL2 |
Therapeutics
Drugs indicated for this disease
60 approved, 77 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Ambrisentan | Approved (phase 4) |
| Aprocitentan | Approved (phase 4) |
| Atenolol | Approved (phase 4) |
| Bendroflumethiazide | Approved (phase 4) |
| Bethanidine | Approved (phase 4) |
| Bosentan | Approved (phase 4) |
| Candesartan Cilexetil | Approved (phase 4) |
| Captopril | Approved (phase 4) |
| Carvedilol | Approved (phase 4) |
| Chlorothiazide | Approved (phase 4) |
| Chlorthalidone | Approved (phase 4) |
| Clonidine | Approved (phase 4) |
| Debrisoquin | Approved (phase 4) |
| Deserpidine | Approved (phase 4) |
| Diazoxide | Approved (phase 4) |
| Doxazosin | Approved (phase 4) |
| Eplerenone | Approved (phase 4) |
| Felodipine | Approved (phase 4) |
| Furosemide | Approved (phase 4) |
| Guanethidine | Approved (phase 4) |
| Guanfacine | Approved (phase 4) |
| Hydralazine | Approved (phase 4) |
| Hydrochlorothiazide | Approved (phase 4) |
| Indapamide | Approved (phase 4) |
| Indoramin | Approved (phase 4) |
| Irbesartan | Approved (phase 4) |
| Isradipine | Approved (phase 4) |
| Ketanserin | Approved (phase 4) |
| Latanoprost | Approved (phase 4) |
| Macitentan | Approved (phase 4) |
| Mecamylamine | Approved (phase 4) |
| Methyldopa | Approved (phase 4) |
| Metolazone | Approved (phase 4) |
| Metyrosine | Approved (phase 4) |
| Minoxidil | Approved (phase 4) |
| Moxonidine | Approved (phase 4) |
| Nadolol | Approved (phase 4) |
| Nifedipine | Approved (phase 4) |
| Nisoldipine | Approved (phase 4) |
| Nitroglycerin | Approved (phase 4) |
| Nitroprusside | Approved (phase 4) |
| Olmesartan Medoxomil | Approved (phase 4) |
| Pargyline | Approved (phase 4) |
| Prazosin | Approved (phase 4) |
| Ramipril | Approved (phase 4) |
| Rauwolfia Serpentina | Approved (phase 4) |
| Rescinnamine | Approved (phase 4) |
| Reserpine | Approved (phase 4) |
| Rilmenidine | Approved (phase 4) |
| Riociguat | Approved (phase 4) |
| Sitaxentan | Approved (phase 4) |
| Sotatercept | Approved (phase 4) |
| Spironolactone | Approved (phase 4) |
| Telmisartan | Approved (phase 4) |
| Torsemide | Approved (phase 4) |
| Trandolapril | Approved (phase 4) |
| Triamterene | Approved (phase 4) |
| Trimethaphan | Approved (phase 4) |
| Valsartan | Approved (phase 4) |
| Veratrum Viride Root | Approved (phase 4) |
| Acarbose | Phase 3 (in late-stage trials) |
| Alcohol | Phase 3 (in late-stage trials) |
| Aliskiren | Phase 3 (in late-stage trials) |
| Allopurinol | Phase 3 (in late-stage trials) |
| Amiloride | Phase 3 (in late-stage trials) |
| Amlodipine | Phase 3 (in late-stage trials) |
| Angiotensin | Phase 3 (in late-stage trials) |
| Angiotensin Ii | Phase 3 (in late-stage trials) |
| Aspirin | Phase 3 (in late-stage trials) |
| Atorvastatin | Phase 3 (in late-stage trials) |
| Azilsartan | Phase 3 (in late-stage trials) |
| Azilsartan Medoxomil | Phase 3 (in late-stage trials) |
| Benazepril | Phase 3 (in late-stage trials) |
| Bisoprolol | Phase 3 (in late-stage trials) |
| Candesartan | Phase 3 (in late-stage trials) |
| Celecoxib | Phase 3 (in late-stage trials) |
| Cilexetil | Phase 3 (in late-stage trials) |
| Cilnidipine | Phase 3 (in late-stage trials) |
| Clevidipine | Phase 3 (in late-stage trials) |
| Darusentan | Phase 3 (in late-stage trials) |
| Delapril | Phase 3 (in late-stage trials) |
| Dexmedetomidine | Phase 3 (in late-stage trials) |
| Dihydralazine | Phase 3 (in late-stage trials) |
| Diltiazem | Phase 3 (in late-stage trials) |
| Enalapril | Phase 3 (in late-stage trials) |
| Estrogens, Conjugated | Phase 3 (in late-stage trials) |
| Etomidate | Phase 3 (in late-stage trials) |
| Ezetimibe | Phase 3 (in late-stage trials) |
| Fenofibrate | Phase 3 (in late-stage trials) |
| Fimasartan | Phase 3 (in late-stage trials) |
| Firibastat | Phase 3 (in late-stage trials) |
| Folic Acid | Phase 3 (in late-stage trials) |
| Fospropofol | Phase 3 (in late-stage trials) |
| Ginseng, American | Phase 3 (in late-stage trials) |
| Glimepiride | Phase 3 (in late-stage trials) |
| Insulin Aspart | Phase 3 (in late-stage trials) |
| Insulin Detemir | Phase 3 (in late-stage trials) |
| Insulin Glargine | Phase 3 (in late-stage trials) |
| Insulin Human | Phase 3 (in late-stage trials) |
| Insulin Susp Isophane Recombinant Human | Phase 3 (in late-stage trials) |
| Insulin Susp Isophane Semisynthetic Purified Human | Phase 3 (in late-stage trials) |
| Labetalol | Phase 3 (in late-stage trials) |
| Lacidipine | Phase 3 (in late-stage trials) |
| Lercanidipine | Phase 3 (in late-stage trials) |
| Levamlodipine | Phase 3 (in late-stage trials) |
| Lisinopril Anhydrous | Phase 3 (in late-stage trials) |
| Losartan | Phase 3 (in late-stage trials) |
| MANIDIPINE 6300 | Phase 3 (in late-stage trials) |
| Medroxyprogesterone Acetate | Phase 3 (in late-stage trials) |
| Metformin | Phase 3 (in late-stage trials) |
| Metoprolol | Phase 3 (in late-stage trials) |
| Midazolam | Phase 3 (in late-stage trials) |
| Minocycline | Phase 3 (in late-stage trials) |
| Nebivolol | Phase 3 (in late-stage trials) |
| Nicardipine | Phase 3 (in late-stage trials) |
| Nitrendipine | Phase 3 (in late-stage trials) |
| OMEGA-3-ACID ETHYL ESTERS | Phase 3 (in late-stage trials) |
| Olmesartan | Phase 3 (in late-stage trials) |
| Perindopril | Phase 3 (in late-stage trials) |
| Pioglitazone | Phase 3 (in late-stage trials) |
| Potassium Chloride | Phase 3 (in late-stage trials) |
| Pravastatin | Phase 3 (in late-stage trials) |
| Progesterone | Phase 3 (in late-stage trials) |
| Propofol | Phase 3 (in late-stage trials) |
| Repaglinide | Phase 3 (in late-stage trials) |
| Rosiglitazone | Phase 3 (in late-stage trials) |
| Rosuvastatin | Phase 3 (in late-stage trials) |
| Sacubitril | Phase 3 (in late-stage trials) |
| Sildenafil | Phase 3 (in late-stage trials) |
| Simvastatin | Phase 3 (in late-stage trials) |
| Spermidine | Phase 3 (in late-stage trials) |
| Tamoxifen | Phase 3 (in late-stage trials) |
| Taurine | Phase 3 (in late-stage trials) |
| Terazosin | Phase 3 (in late-stage trials) |
| Topiramate | Phase 3 (in late-stage trials) |
| Urapidil | Phase 3 (in late-stage trials) |
| XL550 | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Abatacept, Acebutolol, Acetaminophen, Baxdrostat, Calcitriol, Colchicine, Febuxostat, Fosinopril, Glycine, Ibuprofen, Isosorbide, Isosorbide Mononitrate, Magnesium Citrate, Melatonin, Menthol, Microcrystalline Cellulose, Osilodrostat, Propranolol, Sirolimus, Sitokiren, Sparsentan, Starch, Tadalafil.
Drug target analysis
Approved (phase 4): 7 · Phase ≥3: 7 · Phased (≥1): 8 · Undrugged: 67
Druggability breadth: 82 of 206 evidence-associated genes (40%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| TNKS | NIRAPARIB |
| YES1 | PONATINIB |
| CACNA1D | BEPRIDIL |
| ABHD16A | ORLISTAT |
| CACNB2 | NIMODIPINE |
| CALCRL | PRAMLINTIDE |
| CHRM3 | CARBACHOL |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| CHRM3 | 207 | 4 |
| YES1 | 66 | 4 |
| CACNA1D | 48 | 4 |
| CALCRL | 12 | 4 |
| TNKS | 9 | 4 |
| CACNB2 | 2 | 4 |
| RYR2 | 1 | 2 |
| ABHD16A | 1 | 4 |
| RIT1 | 0 | 0 |
| CNNM2 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| NIRAPARIB | 4 | TNKS |
| RUCAPARIB | 4 | TNKS |
| TALAZOPARIB | 4 | TNKS |
| OLAPARIB | 4 | TNKS |
| PONATINIB | 4 | YES1 |
| FEDRATINIB | 4 | CHRM3, YES1 |
| AXITINIB | 4 | YES1 |
| DASATINIB ANHYDROUS | 4 | YES1 |
| NERATINIB | 4 | YES1 |
| INFIGRATINIB PHOSPHATE | 4 | YES1 |
| INFIGRATINIB | 4 | YES1 |
| IBRUTINIB | 4 | YES1 |
| DABRAFENIB | 4 | YES1 |
| VANDETANIB | 4 | CHRM3, YES1 |
| NILOTINIB | 4 | CACNA1D, YES1 |
| BOSUTINIB | 4 | YES1 |
| GILTERITINIB | 4 | YES1 |
| BRIGATINIB | 4 | YES1 |
| PAZOPANIB | 4 | YES1 |
| NINTEDANIB | 4 | YES1 |
| SUNITINIB | 4 | CACNA1D, CHRM3, YES1 |
| DASATINIB | 4 | CACNA1D, YES1 |
| ERLOTINIB | 4 | YES1 |
| QUIZARTINIB | 4 | YES1 |
| CRIZOTINIB | 4 | YES1 |
| MIDOSTAURIN | 4 | YES1 |
| BEPRIDIL | 4 | CACNA1D, CHRM3 |
| IMIPRAMINE | 4 | CACNA1D, CHRM3 |
| HALOFANTRINE | 4 | CACNA1D |
| DROPERIDOL | 4 | CACNA1D |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 7.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| CHRM3 | 1,026 | Binding:764, Functional:244, ADMET:17, Unclassified:1 |
| YES1 | 514 | Binding:509, ADMET:3, Functional:2 |
| CACNA1D | 233 | Binding:145, Functional:81, Toxicity:5, ADMET:2 |
| TNKS | 226 | Binding:223, Functional:3 |
| CALCRL | 196 | Binding:131, Functional:65 |
| ALDH1A2 | 32 | Binding:32 |
| KSR2 | 28 | Binding:28 |
| SLC22A7 | 24 | Functional:18, ADMET:5, Binding:1 |
| CACNB2 | 22 | Binding:20, ADMET:1, Toxicity:1 |
| RYR2 | 15 | Binding:15 |
| ABHD16A | 13 | Binding:13 |
| CAPZA1 | 8 | Binding:8 |
| CYFIP1 | 7 | Binding:7 |
| ATXN2 | 5 | Binding:3, Functional:2 |
| YWHAE | 4 | Binding:4 |
| MTCH2 | 3 | Binding:3 |
| TARBP1 | 2 | Binding:2 |
| PRDM16 | 2 | Binding:2 |
| SLC4A7 | 1 | Binding:1 |
| TBX5 | 1 | Binding:1 |
| PRRC2A | 1 | Binding:1 |
| PRDM8 | 1 | Binding:1 |
| RNF213 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| TARBP1 | 2.1.1.34 | tRNA (guanosine18-2’-O)-methyltransferase |
| TNKS | 2.4.2.30 | NAD+ ADP-ribosyltransferase |
| YES1 | 2.7.10.2 | non-specific protein-tyrosine kinase |
| PRDM16 | 2.1.1.367, 2.1.1.370 | [histone H3]-lysine9 N-methyltransferase, [histone H3]-lysine4 N-dimethyltransferase |
| ALDH1A2 | 1.2.1.36 | retinal dehydrogenase |
| PLCE1 | 3.1.4.11 | phosphoinositide phospholipase C |
| KSR2 | 2.7.11.25 | mitogen-activated protein kinase kinase kinase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| TNKS | 226 |
| YES1 | 514 |
| CACNA1D | 233 |
| CALCRL | 196 |
| CHRM3 | 1,026 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 74; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| NIRAPARIB | 4 | TNKS |
| RUCAPARIB | 4 | TNKS |
| TALAZOPARIB | 4 | TNKS |
| OLAPARIB | 4 | TNKS |
| PONATINIB | 4 | YES1 |
| FEDRATINIB | 4 | CHRM3, YES1 |
| AXITINIB | 4 | YES1 |
| DASATINIB ANHYDROUS | 4 | YES1 |
| NERATINIB | 4 | YES1 |
| INFIGRATINIB PHOSPHATE | 4 | YES1 |
| INFIGRATINIB | 4 | YES1 |
| IBRUTINIB | 4 | YES1 |
| DABRAFENIB | 4 | YES1 |
| VANDETANIB | 4 | CHRM3, YES1 |
| NILOTINIB | 4 | CACNA1D, YES1 |
| BOSUTINIB | 4 | YES1 |
| GILTERITINIB | 4 | YES1 |
| BRIGATINIB | 4 | YES1 |
| PAZOPANIB | 4 | YES1 |
| NINTEDANIB | 4 | YES1 |
| SUNITINIB | 4 | CACNA1D, CHRM3, YES1 |
| DASATINIB | 4 | CACNA1D, YES1 |
| ERLOTINIB | 4 | YES1 |
| QUIZARTINIB | 4 | YES1 |
| CRIZOTINIB | 4 | YES1 |
| MIDOSTAURIN | 4 | YES1 |
| BEPRIDIL | 4 | CACNA1D, CHRM3 |
| IMIPRAMINE | 4 | CACNA1D, CHRM3 |
| HALOFANTRINE | 4 | CACNA1D |
| DROPERIDOL | 4 | CACNA1D |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 7 | TNKS, YES1, CACNA1D, ABHD16A, CACNB2, CALCRL, CHRM3 |
| B | Phased (≥1) drug, not yet approved | 1 | RYR2 |
| C | Druggable family + PDB, no drug | 8 | SEMA7A, TARBP1, ALDH1A2, ULK4, SORCS2, PLCE1, KSR2, NCR3 |
| D | Druggable family + AlphaFold only, no drug | 8 | SLC22A7, OR4X1, OR5B12, ZP4, CORIN, SLC39A8, SBF2, FSTL4 |
| E | Difficult family or no structure, no drug | 51 | RIT1, CNNM2, SALL1, ATXN2, SLC30A1, SLC4A7, TBX18, TBX2, TBX3, TBX5 (+41 more) |
Undrugged target profiles
67 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| PRRC2A | 1 | ABHD16A |
| LRRC7 | 0 | CACNA1D |
| RIT1 | 0 | — |
| CNNM2 | 0 | — |
| SALL1 | 0 | — |
| ATXN2 | 5 | — |
| SEMA7A | 0 | — |
| SLC22A7 | 24 | — |
| SLC30A1 | 0 | — |
| SLC4A7 | 1 | — |
| TARBP1 | 2 | — |
| TBX18 | 0 | — |
| TBX2 | 0 | — |
| TBX3 | 0 | — |
| TBX5 | 1 | — |
| TCF21 | 0 | — |
| TMOD4 | 0 | — |
| TNNT3 | 0 | — |
| UMOD | 0 | — |
| VPS33B | 0 | — |
| WNT2B | 0 | — |
| YWHAE | 4 | — |
| ZNF107 | 0 | — |
| RIBC2 | 0 | — |
| FIGN | 0 | — |
| MS4A6A | 0 | — |
| NID2 | 0 | — |
| ZNF318 | 0 | — |
| CYFIP1 | 7 | — |
| DMRTA1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 4,735.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| PHASE4 | 590 |
| PHASE3 | 461 |
| PHASE2/PHASE3 | 36 |
| PHASE2 | 13 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03713515 | PHASE4 | RECRUITING | Bridging the Evidence-to-practice Gap |
| NCT04111419 | PHASE4 | ACTIVE_NOT_RECRUITING | Intensive Management of Blood Pressure and Cholesterol in Elderly Chinese With Hypertension and Atrial Fibrillation |
| NCT04715568 | PHASE4 | RECRUITING | Secondhand Tobacco Smoke and Cardiovascular Disease |
| NCT04840342 | PHASE4 | ACTIVE_NOT_RECRUITING | MR Antagonist and LSD1 |
| NCT04974138 | PHASE4 | RECRUITING | China Stroke Primary Prevention Trial 2 for Participants With H-type Hypertension and MTHFR 677 CC/CT Genotype (CSPPT2-CC/CT) |
| NCT04974151 | PHASE4 | RECRUITING | China Stroke Primary Prevention Trial 2 for Participants With Hypertension and MTHFR 677 TT Genotype |
| NCT05030545 | PHASE4 | RECRUITING | Cardiovascular Manifestations of MR Activation in Primary Aldosteronism: Pilot Clinical Study |
| NCT05089448 | PHASE4 | RECRUITING | Morning Versus Bedtime Dosing of Antihypertensive Medication |
| NCT05416840 | PHASE4 | NOT_YET_RECRUITING | Effects and Safety of Clonidine Patch on Young and Middle-aged Smokers With Mild Hypertension |
| NCT05421767 | PHASE4 | RECRUITING | Renal Nerve Stimulation in Uncontrolled Hypertensive Patients Undergoing Renal Denervation |
| NCT05593055 | PHASE4 | RECRUITING | Mineralocorticoid Receptor, Coronary Microvascular Function, and Cardiac Efficiency in Hypertension |
| NCT05688579 | PHASE4 | ENROLLING_BY_INVITATION | Effect of MRA on Cardiovascular Disease in Patients With Hypertension and Hyperaldosteronemia |
| NCT05749874 | PHASE4 | ACTIVE_NOT_RECRUITING | Effects of Berberine on Preventing Cardiovascular Disease and Diabetes Mellitus |
| NCT06055452 | PHASE4 | RECRUITING | Effects of SGLT2 Inhibitors in Pre-heart Failure Populations With Hypertension |
| NCT06063772 | PHASE4 | NOT_YET_RECRUITING | Effect of Treatment of Pre-induction Hypertension on Hemodynamic Stability During Induction of General Anesthesia |
| NCT06132477 | PHASE4 | RECRUITING | Impact GLP-1 Agonists Following Bariatric |
| NCT06256991 | PHASE4 | RECRUITING | Potassium Correction for RAAS Optimization in Chronic Kidney Disease |
| NCT06281665 | PHASE4 | RECRUITING | Treatment With Aspirin After Preeclampsia: TAP Trial |
| NCT06431477 | PHASE4 | RECRUITING | Efficacy and Safety of Telmisartan Compared With Losartan |
| NCT06523465 | PHASE4 | RECRUITING | Statin Combined with Amlodipine Treats Primary Aldosteronism |
| NCT06676553 | PHASE4 | RECRUITING | INtraprocedural Feedback-Optimized Renal Denervation Based on Measurements Obtained Through Renal Artery Stimulation: a Randomized Controlled Trial (INFORM) |
| NCT06760078 | PHASE4 | NOT_YET_RECRUITING | Tranexamic Acid with Intensive Blood Pressure Management in Ultra-Early Intracerebral Hemorrhage |
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Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| LOSARTAN | 4 | 85 |
| AMLODIPINE | 4 | 81 |
| HYDROCHLOROTHIAZIDE | 4 | 69 |
| TELMISARTAN | 4 | 69 |
| ALISKIREN | 4 | 65 |
| VALSARTAN | 4 | 60 |
| METOPROLOL | 4 | 54 |
| ENALAPRIL | 4 | 48 |
| NEBIVOLOL | 4 | 41 |
| OLMESARTAN MEDOXOMIL | 4 | 34 |
| BISOPROLOL | 4 | 33 |
| IRBESARTAN | 4 | 32 |
| PERINDOPRIL | 4 | 28 |
| RAMIPRIL | 4 | 27 |
| DOXAZOSIN | 4 | 24 |
| LISINOPRIL ANHYDROUS | 4 | 24 |
| CHLORTHALIDONE | 4 | 23 |
| ATENOLOL | 4 | 22 |
| AZILSARTAN MEDOXOMIL | 4 | 22 |
| BENAZEPRIL | 4 | 15 |
| CANDESARTAN CILEXETIL | 4 | 15 |
| CLEVIDIPINE | 4 | 13 |
| EPLERENONE | 4 | 12 |
| NIFEDIPINE | 4 | 11 |
| CARVEDILOL | 4 | 9 |
| TRANDOLAPRIL | 4 | 8 |
| SPIRONOLACTONE | 4 | 7 |
| ATORVASTATIN | 4 | 6 |
| INDAPAMIDE | 4 | 6 |
| ALCOHOL | 4 | 5 |
Related Atlas pages
- Cohort genes: RIT1, CNNM2, RYR2, SALL1, ATXN2, SEMA7A, SLC22A7, SLC30A1, SLC4A7, TARBP1, TBX18, TBX2, TBX3, TBX5, TCF21, TMOD4, TNKS, TNNT3, UMOD, VPS33B, WNT2B, YES1, YWHAE, ZNF107, RIBC2, FIGN, MS4A6A, NID2, ZNF318, CYFIP1, DMRTA1, CACNA1D, PRRC2A, ABHD16A, MPIG6B, SLC44A4, PRDM8, PRDM16, CACNB2, RNF213, OR4X1, CAPZA1, OR5B12, ALDH1A2, ZP4, ULK4, ZNF831, LINC02871, SOX6, SORCS2, CALCRL, SWAP70, PLCE1, SLC12A9, CDH13, CDH17, MTCH2, CRIP3, BANK1, LRRC7, KSR2, CORIN, NCR3, FGD5, CUX2, CHRM3, CCDC88C, MBIP, NBEAL1, SLC39A8, PLEKHG1, PHACTR1, SBF2, FSTL4, COL4A2
- Drugs: Losartan, Amlodipine, Hydrochlorothiazide, Telmisartan, Aliskiren, Valsartan, Metoprolol, Enalapril, Nebivolol, Olmesartan Medoxomil, Bisoprolol, Irbesartan, Perindopril, Ramipril, Doxazosin, Lisinopril, Chlorthalidone, Atenolol, Azilsartan Medoxomil, Benazepril, Candesartan Cilexetil, Clevidipine, Eplerenone, Nifedipine, Carvedilol, Trandolapril, Spironolactone, Atorvastatin, Indapamide, Alcohol