Interstitial lung disease
disease diseaseOn this page
Also known as ILD
Summary
Interstitial lung disease (MONDO:0015925) is a disease (an umbrella term covering 14 Mondo subtypes) caused by LAMP3 (GenCC Strong), with 25 cohort genes (65 GWAS associations across 21 studies) and 392 clinical trials. Top therapeutic interventions include treprostinil, pirfenidone, and tofacitinib.
At a glance
- Prevalence: 1-5 / 10 000 (Greece) [Orphanet-validated]
- Causal gene: LAMP3 (GenCC Strong)
- Umbrella term: 14 Mondo subtypes
- Cohort genes: 25
- GWAS associations: 65
- ClinVar variants: 13
- Clinical trials: 392
Clinical features
Epidemiology
Prevalence records
5 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Annual incidence | 1-9 / 100 000 | 4.1 | Denmark | Validated |
| Annual incidence | 1-9 / 100 000 | 7.6 | Spain | Validated |
| Annual incidence | 1-9 / 100 000 | 4.63 | Greece | Validated |
| Point prevalence | 1-5 / 10 000 | 17.3 | Greece | Validated |
| Annual incidence | 1-9 / 100 000 | 5.4 | Europe | Not yet validated |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | interstitial lung disease |
| Mondo ID | MONDO:0015925 |
| EFO | EFO:0004244 |
| MeSH | D017563 |
| Orphanet | 182095 |
| DOID | DOID:3082 |
| ICD-10-CM | J80-J84 |
| NCIT | C164315 |
| SNOMED CT | 233703007 |
| UMLS | C5441745 |
| MedGen | 1788738 |
| MedDRA | 10022611 |
| Anatomy (UBERON) | UBERON:0008946 |
| Is cancer (heuristic) | no |
Also known as: ILD · interstitial lung disease
Data availability: 13 ClinVar variants · 65 GWAS associations (21 studies) · 3 GenCC gene-disease records.
Disease family
An umbrella term covering 14 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › respiratory system disorder › lower respiratory tract disorder › lung disorder › interstitial lung disease
Related subtypes (32): aspiration pneumonia, lung abscess, pneumonic plague, pulmonary alveolar proteinosis, pulmonary systemic sclerosis, obstructive lung disease, bronchiolitis, pulmonary immaturity, rheumatoid arthritis-associated interstitial lung disease, pulmonary embolism and infarction, acute chest syndrome, fungal lung infectious disease, middle lobe syndrome, pulmonary coin lesion, pulmonary plasma cell granuloma, silo filler disease, pulmonary alveolar microlithiasis, pulmonary venoocclusive disease, acute lung injury, hantavirus pulmonary syndrome, pulmonary non-tuberculous mycobacterial infection, respiratory failure, lung neoplasm, occupational lung disease, Wilson-Mikity syndrome, neonatal aspiration syndrome, pneumonitis, vanishing lung syndrome, restrictive pulmonary disease, shrinking lung syndrome, dystrophic pulmonary ossification, pulmonary artery disease
Subtypes (14): pulmonary fibrosis, bronchiolitis obliterans syndrome, pneumoconiosis, pulmonary fibrosis-hepatic hyperplasia-bone marrow hypoplasia syndrome, interstitial lung disease specific to childhood, isolated pulmonary capillaritis, interstitial lung disease specific to adulthood, drug or radiation exposure-related interstitial lung disease, hypersensitivity pneumonitis, secondary pulmonary hemosiderosis, inherited interstitial lung disease, radiation pneumonitis, bronchiolocentric pattern of interstitial pneumonia, idiopathic pulmonary fibrosis
Genetics & variants
GWAS landscape
65 GWAS associations across 21 studies. Top hits map to 36 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs35705950 | 1e-76 | MUC5AC - MUC5B | T | 1.01 |
| rs2021408 | 2e-62 | HLA-DPB1, HLA-DPA1 | C | 2.68 |
| rs7934606 | 7e-34 | MUC2 | T | 1.52 |
| rs7734992 | 4e-20 | TERT | C | 0.24 |
| rs2076295 | 1e-19 | DSP | G | 1.43 |
| rs2736100 | 2e-19 | TERT | A | 1.37 |
| rs1981997 | 9e-14 | MAPT | G | 1.41 |
| rs6793295 | 8e-13 | LRRC34 | C | 1.3 |
| rs12610495 | 2e-12 | DPP9 | G | 1.29 |
| rs2034650 | 1e-11 | IVD | A | 1.3 |
| rs2609255 | 2e-11 | FAM13A | G | 1.29 |
| rs116483731 | 2e-11 | SPDL1 | A | 0.81 |
| rs7739124 | 3e-09 | HTR1E - RN7SKP209 | C | 1.31 |
| rs2957316 | 3e-09 | MAPK8IP1P1 - ARL17B | C | 0.26 |
| rs912535 | 4e-09 | HTR1E - RN7SKP209 | G | 1.37 |
| rs73199442 | 5e-09 | LINC00882 | T | 1.68 |
| rs1278769 | 7e-09 | ATP11A | G | 1.27 |
| rs6477542 | 7e-09 | LINC01505 | T | 1.34 |
| rs116906005 | 8e-09 | DUS2 | T | 1.12 |
| rs4727443 | 1e-08 | AZGP1P1 - ZKSCAN1 | C | 1.3 |
| rs6578890 | 1e-08 | PPFIBP2 | ? | 4.32 |
| rs11191865 | 2e-08 | STN1 | A | 1.25 |
| rs12702634 | 2e-08 | RPA3, UMAD1 | C | 2.04 |
| rs561398374 | 2e-08 | PLPPR1 | A | 14.1 |
| rs6886640 | 4e-08 | ISCA1P1 - HTR1A | G | 1.28 |
| rs7744971 | 4e-08 | HTR1E - RN7SKP209 | G | 1.32 |
| rs57919238 | 4e-08 | NBEA | A | 1.48 |
| rs6631122 | 5e-08 | CKS1BP6 - FTLP2 | G | 0.12 |
| rs1379326 | 1e-07 | CSMD1 | C | 1.78 |
| rs7005380 | 2e-07 | DEPTOR | G | 1.25 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST90473724 | UK Biobank Whole-Genome Sequencing Consortium | 2025 | 4,477 | 453,963 | Whole-genome sequencing of 490,640 UK Biobank participants. |
| GCST90018863 | Sakaue S | 2021 | 2,267 | 467,560 | A cross-population atlas of genetic associations for 220 human phenotypes. |
| GCST90080147 | Backman JD | 2021 | 1,577 | 386,114 | Exome sequencing and analysis of 454,787 UK Biobank participants. |
| GCST90084133 | Backman JD | 2021 | 1,577 | 386,114 | Exome sequencing and analysis of 454,787 UK Biobank participants. |
| GCST90080146 | Backman JD | 2021 | 1,304 | 386,553 | Exome sequencing and analysis of 454,787 UK Biobank participants. |
| GCST90084132 | Backman JD | 2021 | 1,304 | 386,553 | Exome sequencing and analysis of 454,787 UK Biobank participants. |
| GCST009501 | Hobbs BD | 2019 | 1,181 | 7,255 | Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis. |
| GCST001968 | Fingerlin TE | 2013 | 1,161 | 4,683 | Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis. |
| GCST90018643 | Sakaue S | 2021 | 1,046 | 176,974 | A cross-population atlas of genetic associations for 220 human phenotypes. |
| GCST009502 | Hobbs BD | 2019 | 965 | 7,255 | Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 2 |
| Tier 2: splice/UTR | 2 |
| Tier 3: regulatory | 0 |
| Tier 4: intronic/intergenic | 46 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 45 |
| low_freq (0.01-0.05) | 3 |
| rare (<0.01) | 0 |
| unknown | 2 |
Functional consequences
| Consequence | Count |
|---|---|
| intron_variant | 30 |
| intergenic_variant | 14 |
| missense_variant | 2 |
| non_coding_transcript_exon_variant | 2 |
| splice_region_variant | 1 |
| 3_prime_UTR_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| rs35705950 | 11 | 1219991 | G>A,T | 0.05 | splice_region_variant | MUC5AC - MUC5B | 1e-76 | Tier 2: splice/UTR |
| rs2021408 | 6 | 33078949 | T>C | 0.178 | intron_variant | HLA-DPB1, HLA-DPA1 | 2e-62 | Tier 4: intronic/intergenic |
| rs7934606 | 11 | 1100037 | C>A,G,T | 0.42 | intron_variant | MUC2 | 7e-34 | Tier 4: intronic/intergenic |
| rs7734992 | 5 | 1280013 | T>A,C | 0.05 | intron_variant | TERT | 4e-20 | Tier 4: intronic/intergenic |
| rs2076295 | 6 | 7562999 | T>A,C,G | 0.44 | intron_variant | DSP | 1e-19 | Tier 4: intronic/intergenic |
| rs2736100 | 5 | 1286401 | C>A,G,T | 0.49 | intron_variant | TERT | 2e-19 | Tier 4: intronic/intergenic |
| rs1981997 | 17 | 45979401 | G>A | 0.23 | intron_variant | MAPT | 9e-14 | Tier 4: intronic/intergenic |
| rs6793295 | 3 | 169800667 | T>A,C,G | 0.26 | missense_variant | LRRC34 | 8e-13 | Tier 1: coding |
| rs12610495 | 19 | 4717660 | A>G,T | 0.29 | intron_variant | DPP9 | 2e-12 | Tier 4: intronic/intergenic |
| rs2034650 | 15 | 40425103 | G>A,C,T | 0.49 | intergenic_variant | IVD | 1e-11 | Tier 4: intronic/intergenic |
| rs2609255 | 4 | 88890044 | G>T | 0.21 | intron_variant | FAM13A | 2e-11 | Tier 4: intronic/intergenic |
| rs116483731 | 5 | 169588475 | G>A,T | missense_variant | SPDL1 | 2e-11 | Tier 1: coding | |
| rs7739124 | 6 | 87040097 | C>A | 0.33 | intergenic_variant | HTR1E - RN7SKP209 | 3e-09 | Tier 4: intronic/intergenic |
| rs2957316 | 17 | 46253848 | T>C | 0.05 | intron_variant | MAPK8IP1P1 - ARL17B | 3e-09 | Tier 4: intronic/intergenic |
| rs912535 | 6 | 87042603 | G>A,C,T | 0.324 | intergenic_variant | HTR1E - RN7SKP209 | 4e-09 | Tier 4: intronic/intergenic |
| rs73199442 | 3 | 106852176 | A>T | 0.06 | intron_variant | LINC00882 | 5e-09 | Tier 4: intronic/intergenic |
| rs1278769 | 13 | 112882313 | A>G,T | 0.24 | 3_prime_UTR_variant | ATP11A | 7e-09 | Tier 2: splice/UTR |
| rs6477542 | 9 | 106745151 | C>G,T | 0.445 | intergenic_variant | LINC01505 | 7e-09 | Tier 4: intronic/intergenic |
| rs116906005 | 16 | 68050160 | C>T | 0.02 | intron_variant | DUS2 | 8e-09 | Tier 4: intronic/intergenic |
| rs4727443 | 7 | 99995723 | C>A,G | 0.39 | intergenic_variant | AZGP1P1 - ZKSCAN1 | 1e-08 | Tier 4: intronic/intergenic |
| rs6578890 | 11 | 7647630 | A>G | 0.05 | intron_variant | PPFIBP2 | 1e-08 | Tier 4: intronic/intergenic |
| rs11191865 | 10 | 103913084 | G>A | 0.49 | intron_variant | STN1 | 2e-08 | Tier 4: intronic/intergenic |
| rs12702634 | 7 | 7672101 | C>G,T | 0.081 | intron_variant | RPA3, UMAD1 | 2e-08 | Tier 4: intronic/intergenic |
| rs561398374 | 9 | 101262492 | C>A | intron_variant | PLPPR1 | 2e-08 | Tier 4: intronic/intergenic | |
| rs6886640 | 5 | 62876649 | G>A,C,T | 0.38 | intergenic_variant | ISCA1P1 - HTR1A | 4e-08 | Tier 4: intronic/intergenic |
| rs7744971 | 6 | 87028123 | A>G | 0.28 | intergenic_variant | HTR1E - RN7SKP209 | 4e-08 | Tier 4: intronic/intergenic |
| rs57919238 | 13 | 35459015 | C>A,G | 0.205 | intron_variant | NBEA | 4e-08 | Tier 4: intronic/intergenic |
| rs6631122 | X | 30621617 | T>A,G | 0.05 | intergenic_variant | CKS1BP6 - FTLP2 | 5e-08 | Tier 4: intronic/intergenic |
| rs1379326 | 8 | 4760288 | T>A,C,G | 0.26 | intron_variant | CSMD1 | 1e-07 | Tier 4: intronic/intergenic |
| rs7005380 | 8 | 119941633 | G>A,C,T | 0.37 | intron_variant | DEPTOR | 2e-07 | Tier 4: intronic/intergenic |
ClinVar germline variants
13 retrieved; paginated sample, class counts are floors:
4 association, 4 benign; association, 2 pathogenic/likely pathogenic, 1 uncertain significance, 1 likely pathogenic, 1 conflicting classifications of pathogenicity
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 400 | NM_019892.6(INPP5E):c.1132C>T (p.Arg378Cys) | INPP5E | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 916674 | NM_198253.3(TERT):c.2812C>T (p.Arg938Trp) | TERT | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 916632 | NM_198253.3(TERT):c.347C>T (p.Thr116Ile) | TERT | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 916671 | NM_198253.3(TERT):c.230T>C (p.Leu77Pro) | LOC110806263 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 884833 | NM_001089.3(ABCA3):c.2539A>G (p.Met847Val) | ABCA3 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 972888 | NM_007365.3(PADI2):c.*258A>T | PADI2 | association | no assertion criteria provided |
| 972889 | NM_007365.3(PADI2):c.1159-39G>A | PADI2 | association | no assertion criteria provided |
| 972890 | NM_007365.3(PADI2):c.729T>G (p.Gly243=) | PADI2 | association | no assertion criteria provided |
| 972891 | NM_007365.3(PADI2):c.92+1006C>A | PADI2 | association | no assertion criteria provided |
| 972892 | NM_012387.3(PADI4):c.163G>A (p.Gly55Ser) | PADI4 | Benign; association | no assertion criteria provided |
| 972893 | NM_012387.3(PADI4):c.245T>C (p.Val82Ala) | PADI4 | Benign; association | no assertion criteria provided |
| 972894 | NM_012387.3(PADI4):c.349T>C (p.Leu117=) | PADI4 | Benign; association | no assertion criteria provided |
| 972895 | NM_012387.3(PADI4):c.335G>C (p.Gly112Ala) | PADI4 | Benign; association | no assertion criteria provided |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 4 · Orphanet: 48 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 2
Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)
| Gene | HGNC | Evidence routes |
|---|---|---|
| TERT | TERT | GWAS, Orphanet |
| MUC5B | MUC5B | GWAS, GenCC, Orphanet |
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| LAMP3 | Strong | Autosomal recessive | interstitial lung disease | |
| ARHGAP42 | Limited | Autosomal recessive | interstitial lung disease | |
| MUC5B | Limited | Autosomal recessive | interstitial lung disease | 2 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| TERT | Orphanet:146 | Differentiated thyroid carcinoma |
| TERT | Orphanet:1501 | Adrenocortical carcinoma |
| TERT | Orphanet:1775 | Dyskeratosis congenita |
| TERT | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| TERT | Orphanet:2495 | Meningioma |
| TERT | Orphanet:3322 | Hoyeraal-Hreidarsson syndrome |
| TERT | Orphanet:457246 | Clear cell sarcoma of kidney |
| TERT | Orphanet:618 | Familial melanoma |
| TERT | Orphanet:88 | Idiopathic aplastic anemia |
| MUC5B | Orphanet:171700 | Diffuse panbronchiolitis |
| MUC5B | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| MUC5B | Orphanet:686465 | Fibrotic hypersensitivity pneumonitis |
| ATP11A | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| ATP11A | Orphanet:90635 | Rare autosomal dominant non-syndromic sensorineural deafness type DFNA |
| DPP9 | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| PMPCA | Orphanet:1170 | Autosomal recessive cerebelloparenchymal disorder type 3 |
| FAM13A | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| INPP5E | Orphanet:1454 | Joubert syndrome with hepatic defect |
| INPP5E | Orphanet:220493 | Joubert syndrome with ocular defect |
| INPP5E | Orphanet:475 | Isolated Joubert syndrome |
| INPP5E | Orphanet:75858 | MORM syndrome |
| STN1 | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| STN1 | Orphanet:313838 | Coats plus syndrome |
| DSP | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| DSP | Orphanet:158687 | Lethal acantholytic erosive disorder |
| DSP | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| DSP | Orphanet:293165 | Skin fragility-woolly hair-palmoplantar keratoderma syndrome |
| DSP | Orphanet:293888 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-left variant |
| DSP | Orphanet:293899 | Inherited isolated arrhythmogenic ventricular dysplasia, biventricular variant |
| DSP | Orphanet:293910 | Inherited isolated arrhythmogenic cardiomyopathy, dominant-right variant |
| DSP | Orphanet:369992 | Severe dermatitis-multiple allergies-metabolic wasting syndrome |
| DSP | Orphanet:476096 | Erythrokeratodermia-cardiomyopathy syndrome |
| DSP | Orphanet:50942 | Striate palmoplantar keratoderma |
| DSP | Orphanet:65282 | Carvajal syndrome |
| ABCA3 | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| ABCA3 | Orphanet:217563 | Neonatal acute respiratory distress syndrome |
| ABCA3 | Orphanet:440402 | Interstitial lung disease due to ABCA3 deficiency |
| ABCA3 | Orphanet:685082 | Pediatric acute respiratory distress syndrome |
| GJA5 | Orphanet:3303 | Tetralogy of Fallot |
| GJA5 | Orphanet:334 | Hereditary atrial fibrillation |
| MAPT | Orphanet:100069 | Semantic dementia |
| MAPT | Orphanet:100070 | Progressive non-fluent aphasia |
| MAPT | Orphanet:240071 | Classic progressive supranuclear palsy syndrome |
| MAPT | Orphanet:240085 | Progressive supranuclear palsy-predominant parkinsonism syndrome |
| MAPT | Orphanet:240094 | Progressive supranuclear palsy-pure akinesia with gait freezing syndrome |
| MAPT | Orphanet:240103 | Progressive supranuclear palsy-corticobasal syndrome |
| MAPT | Orphanet:240112 | Progressive supranuclear palsy-progressive non-fluent aphasia syndrome |
| MAPT | Orphanet:275864 | Behavioral variant of frontotemporal dementia |
Cohort genes → proteins
25 cohort genes, 24 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 16 |
| gwas_and_gencc | 1 |
| gwas_and_clinvar | 1 |
| multi_evidence | 7 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| TERT | HGNC:11730 | ENSG00000164362 | O14746 | Telomerase reverse transcriptase | gwas,clinvar |
| MUC5B | HGNC:7516 | ENSG00000117983 | Q9HC84 | Mucin-5B | gwas,gencc |
| LAMP3 | HGNC:14582 | ENSG00000078081 | Q9UQV4 | Lysosome-associated membrane glycoprotein 3 | gencc |
| ARHGAP42 | HGNC:26545 | ENSG00000165895 | A6NI28 | Rho GTPase-activating protein 42 | gencc |
| RPA3 | HGNC:10291 | ENSG00000106399 | P35244 | Replication protein A 14 kDa subunit | gwas |
| ATP11A | HGNC:13552 | ENSG00000068650 | P98196 | Phospholipid-transporting ATPase IH | gwas |
| PADI2 | HGNC:18341 | ENSG00000117115 | Q9Y2J8 | Protein-arginine deiminase type-2 | clinvar |
| PADI4 | HGNC:18368 | ENSG00000159339 | Q9UM07 | Protein-arginine deiminase type-4 | clinvar |
| DPP9 | HGNC:18648 | ENSG00000142002 | Q86TI2 | Dipeptidyl peptidase 9 | gwas |
| PMPCA | HGNC:18667 | ENSG00000165688 | Q10713 | Mitochondrial-processing peptidase subunit alpha | clinvar |
| FAM13A | HGNC:19367 | ENSG00000138640 | O94988 | Protein FAM13A | gwas |
| IPO11 | HGNC:20628 | ENSG00000086200 | Q9UI26 | Importin-11 | gwas |
| INPP5E | HGNC:21474 | ENSG00000148384 | Q9NRR6 | Phosphatidylinositol polyphosphate 5-phosphatase type IV | clinvar |
| DUSP23 | HGNC:21480 | ENSG00000158716 | Q9BVJ7 | Dual specificity protein phosphatase 23 | gwas |
| STN1 | HGNC:26200 | ENSG00000107960 | Q9H668 | CST complex subunit STN1 | gwas |
| LRRC34 | HGNC:28408 | ENSG00000171757 | Q8IZ02 | Leucine-rich repeat-containing protein 34 | gwas |
| ACP6 | HGNC:29609 | ENSG00000162836 | Q9NPH0 | Lysophosphatidic acid phosphatase type 6 | gwas |
| DSP | HGNC:3052 | ENSG00000096696 | P15924 | Desmoplakin | gwas |
| ABCA3 | HGNC:33 | ENSG00000167972 | Q99758 | Phospholipid-transporting ATPase ABCA3 | clinvar |
| GJA5 | HGNC:4279 | ENSG00000265107 | P36382 | Gap junction alpha-5 protein | gwas |
| FCF1P3 | HGNC:44615 | ENSG00000239997 | FCF1 pseudogene 3 | gwas | |
| UMAD1 | HGNC:48955 | ENSG00000219545 | C9J7I0 | UBAP1-MVB12-associated (UMA)-domain containing protein 1 | gwas |
| HTR1E | HGNC:5291 | ENSG00000168830 | P28566 | 5-hydroxytryptamine receptor 1E | gwas |
| MAPT | HGNC:6893 | ENSG00000186868 | P10636 | Microtubule-associated protein tau | gwas |
| MUC2 | HGNC:7512 | ENSG00000198788 | Q02817 | Mucin-2 | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| TERT | Telomerase reverse transcriptase | Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. |
| MUC5B | Mucin-5B | Gel-forming mucin that is thought to contribute to the lubricating and viscoelastic properties of whole saliva and cervical mucus. |
| LAMP3 | Lysosome-associated membrane glycoprotein 3 | Lysosomal membrane glycoprotein which plays a role in the unfolded protein response (UPR) that contributes to protein degradation and cell survival during proteasomal dysfunction. |
| ARHGAP42 | Rho GTPase-activating protein 42 | May influence blood pressure by functioning as a GTPase-activating protein for RHOA in vascular smooth muscle. |
| RPA3 | Replication protein A 14 kDa subunit | As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates that form during DNA replication or upon DNA stress. |
| ATP11A | Phospholipid-transporting ATPase IH | Catalytic component of a P4-ATPase flippase complex which catalyzes the hydrolysis of ATP coupled to the transport of aminophospholipids, phosphatidylserines (PS) and phosphatidylethanolamines (PE), from the outer to the inner leaflet of t… |
| PADI2 | Protein-arginine deiminase type-2 | Catalyzes the deimination of arginine residues of proteins. |
| PADI4 | Protein-arginine deiminase type-4 | Catalyzes the citrullination/deimination of arginine residues of proteins such as histones, thereby playing a key role in histone code and regulation of stem cell maintenance. |
| DPP9 | Dipeptidyl peptidase 9 | Dipeptidyl peptidase that cleaves off N-terminal dipeptides from proteins having a Pro or Ala residue at position 2. |
| PMPCA | Mitochondrial-processing peptidase subunit alpha | Substrate recognition and binding subunit of the essential mitochondrial processing protease (MPP), which cleaves the mitochondrial sequence off newly imported precursors proteins. |
| IPO11 | Importin-11 | Functions in nuclear protein import as nuclear transport receptor. |
| INPP5E | Phosphatidylinositol polyphosphate 5-phosphatase type IV | Phosphatidylinositol (PtdIns) phosphatase that specifically hydrolyzes the 5-phosphate of phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3), phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2) and phosphatidylinositol 3,5-bispho… |
| DUSP23 | Dual specificity protein phosphatase 23 | Protein phosphatase that mediates dephosphorylation of proteins phosphorylated on Tyr and Ser/Thr residues. |
| STN1 | CST complex subunit STN1 | Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. |
| LRRC34 | Leucine-rich repeat-containing protein 34 | Highly expressed in stem cells where it may be involved in regulation of pluripotency. |
| ACP6 | Lysophosphatidic acid phosphatase type 6 | Hydrolyzes lysophosphatidic acid (LPA) containing a medium length fatty acid chain to the corresponding monoacylglycerol. |
| DSP | Desmoplakin | A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. |
| ABCA3 | Phospholipid-transporting ATPase ABCA3 | Catalyzes the ATP-dependent transport of phospholipids such as phosphatidylcholine and phosphoglycerol from the cytoplasm into the lumen side of lamellar bodies, in turn participates in the lamellar bodies biogenesis and homeostasis of pul… |
| GJA5 | Gap junction alpha-5 protein | One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. |
| HTR1E | 5-hydroxytryptamine receptor 1E | G-protein coupled receptor for 5-hydroxytryptamine (serotonin). |
| MAPT | Microtubule-associated protein tau | Promotes microtubule assembly and stability, and might be involved in the establishment and maintenance of neuronal polarity. |
| MUC2 | Mucin-2 | Coats the epithelia of the intestines and other mucus membrane-containing organs to provide a protective, lubricating barrier against particles and infectious agents at mucosal surfaces. |
Protein-family classification
Druggable: 9 · Difficult: 3 · Unknown: 13 · Druggable fraction: 0.36
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Phosphatase | 2 | 6.7× | 0.284 |
| Protease | 2 | 2.9× | 0.593 |
| Transporter | 1 | 3.1× | 0.686 |
| Enzyme (other) | 3 | 1.4× | 0.686 |
| Scaffold/PPI | 2 | 1.4× | 0.686 |
| GPCR | 1 | 1.0× | 0.826 |
| Other/Unknown | 13 | 0.9× | 0.826 |
| Transcription factor | 1 | 0.3× | 0.960 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| TERT | Other/Unknown | no | RT_dom, Telomerase_RT, Telomerase_RBD | |
| MUC5B | Other/Unknown | no | VWF_dom, VWF_type-D, TIL_dom | |
| LAMP3 | Other/Unknown | no | Lysosome-assoc_membr_glycop, Lamp2-like_luminal | |
| ARHGAP42 | Scaffold/PPI | no | RhoGAP_dom, SH3_domain, PH_domain | |
| RPA3 | Other/Unknown | no | NA-bd_OB-fold, Rfa2 | |
| ATP11A | Transcription factor | no | 7.6.2.1 | P_typ_ATPase, P-type_ATPase_IV, ATPase_P-typ_transduc_dom_A_sf |
| PADI2 | Enzyme (other) | yes | 3.5.3.15 | PAD, Cupredoxin, PAD_C |
| PADI4 | Enzyme (other) | yes | 3.5.3.15 | PAD, Cupredoxin, PAD_C |
| DPP9 | Protease | yes | 3.4.13.19 | Peptidase_S9_cat, Peptidase_S9B_N, AB_hydrolase_fold |
| PMPCA | Protease | yes | 3.4.24.64 | Pept_M16_Zn_BS, Peptidase_M16_C, Metalloenz_LuxS/M16 |
| FAM13A | Other/Unknown | no | RhoGAP_dom, Rho_GTPase_activation_prot, FAM13 | |
| IPO11 | Other/Unknown | no | Importin-beta_N, ARM-like, ARM-type_fold | |
| INPP5E | Enzyme (other) | yes | 3.1.3.36 | IPPc, Endo/exonu/phosph_ase_sf, INPP5E |
| DUSP23 | Phosphatase | yes | 3.1.3.48 | Tyr_Pase_dom, Tyr_Pase_cat, Tyr_Pase_AS |
| STN1 | Other/Unknown | no | NA-bd_OB_tRNA, NA-bd_OB-fold, Stn1 | |
| LRRC34 | Other/Unknown | no | Leu-rich_rpt, LRR_dom_sf, LRR-containing_regulator | |
| ACP6 | Phosphatase | yes | 3.1.3.106 | His_Pase_clade-2, His_PPase_superfam, Acid_Pase_AS |
| DSP | Scaffold/PPI | no | Plectin_repeat, SH3_domain, Spectrin/alpha-actinin | |
| ABCA3 | Transporter | yes | ABC_transporter-like_ATP-bd, AAA+_ATPase, ABC2_TM | |
| GJA5 | Other/Unknown | no | Connexin, Connexin40, Connexin_N | |
| FCF1P3 | Other/Unknown | no | ||
| UMAD1 | Other/Unknown | no | UMA, UMAD1 | |
| HTR1E | GPCR | yes | GPCR_Rhodpsn, 5HT_rcpt, GPCR_Rhodpsn_7TM | |
| MAPT | Other/Unknown | no | MAP_tubulin-bd_rpt, Tau, MAP2/MAP4/Tau | |
| MUC2 | Other/Unknown | no | VWF_dom, VWF_type-D, TIL_dom |
Expression context
Cohort genes with no expression data: 0.
21 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 25 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | 3 |
| right uterine tube | 3 |
| mucosa of transverse colon | 2 |
| lower lobe of lung | 2 |
| sperm | 2 |
| visceral pleura | 2 |
| calcaneal tendon | 2 |
| jejunal mucosa | 2 |
| bronchial epithelial cell | 2 |
| bronchus | 2 |
| right lobe of liver | 2 |
| oocyte | 2 |
| secondary oocyte | 2 |
| primordial germ cell in gonad | 2 |
| prefrontal cortex | 2 |
| olfactory bulb | 1 |
| stromal cell of endometrium | 1 |
| type B pancreatic cell | 1 |
| gall bladder | 1 |
| trachea | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| TERT | 105 | broad | yes | stromal cell of endometrium, type B pancreatic cell, olfactory bulb |
| MUC5B | 171 | tissue_specific | marker | trachea, gall bladder, mucosa of transverse colon |
| LAMP3 | 199 | broad | marker | lower lobe of lung, sperm, visceral pleura |
| ARHGAP42 | 224 | ubiquitous | marker | calcaneal tendon, jejunal mucosa, sural nerve |
| RPA3 | 287 | ubiquitous | marker | bronchial epithelial cell, epithelium of bronchus, bronchus |
| ATP11A | 268 | ubiquitous | marker | germinal epithelium of ovary, visceral pleura, heart right ventricle |
| PADI2 | 251 | broad | marker | medial globus pallidus, globus pallidus, C1 segment of cervical spinal cord |
| PADI4 | 123 | tissue_specific | marker | blood, bone marrow, bone marrow cell |
| DPP9 | 236 | ubiquitous | marker | gastrocnemius, hindlimb stylopod muscle, right lobe of liver |
| PMPCA | 276 | ubiquitous | marker | right lobe of liver, adrenal tissue, apex of heart |
| FAM13A | 293 | ubiquitous | marker | secondary oocyte, oocyte, jejunal mucosa |
| IPO11 | 241 | ubiquitous | marker | primordial germ cell in gonad, male germ line stem cell (sensu Vertebrata) in testis, colonic epithelium |
| INPP5E | 279 | ubiquitous | yes | right uterine tube, secondary oocyte, oocyte |
| DUSP23 | 240 | ubiquitous | marker | left adrenal gland cortex, left adrenal gland, olfactory segment of nasal mucosa |
| STN1 | 284 | ubiquitous | marker | lower esophagus mucosa, oral cavity, esophagus mucosa |
| LRRC34 | 192 | broad | marker | bronchial epithelial cell, bronchus, sperm |
| ACP6 | 257 | ubiquitous | marker | right uterine tube, pancreatic ductal cell, mucosa of stomach |
| DSP | 253 | ubiquitous | marker | skin of hip, upper leg skin, hair follicle |
| ABCA3 | 222 | ubiquitous | marker | lower lobe of lung, upper lobe of lung, upper lobe of left lung |
| GJA5 | 190 | broad | marker | placenta, right coronary artery, left coronary artery |
| FCF1P3 | 44 | yes | male germ line stem cell (sensu Vertebrata) in testis, corpus callosum, right uterine tube | |
| UMAD1 | 249 | ubiquitous | marker | body of pancreas, calcaneal tendon, pancreas |
| HTR1E | 77 | broad | yes | primordial germ cell in gonad, male germ line stem cell (sensu Vertebrata) in testis, prefrontal cortex |
| MAPT | 141 | broad | marker | cortical plate, superior frontal gyrus, prefrontal cortex |
| MUC2 | 96 | tissue_specific | marker | mucosa of transverse colon, rectum, small intestine Peyer’s patch |
Protein interactions among cohort
Intra-cohort edges: 12.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| MAPT | 7,289 |
| TERT | 5,717 |
| RPA3 | 5,390 |
| PMPCA | 3,679 |
| DSP | 2,897 |
| MUC5B | 2,659 |
| MUC2 | 2,069 |
| DPP9 | 1,878 |
| STN1 | 1,863 |
| LAMP3 | 1,527 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ABCA3 | LAMP3 | intact |
| ACP6 | GJA5 | string_interaction |
| ACP6 | PMPCA | biogrid_interaction |
| ATP11A | DPP9 | string_interaction |
| ATP11A | FAM13A | string_interaction |
| ATP11A | MUC5B | string_interaction |
| ATP11A | STN1 | string_interaction |
| DPP9 | FAM13A | string_interaction |
| LRRC34 | STN1 | string_interaction |
| MUC2 | MUC5B | string_interaction |
| RPA3 | STN1 | string_interaction |
| RPA3 | UMAD1 | string_interaction |
Structural data
PDB: 17 · AlphaFold-only: 7 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| MAPT | P10636 | 293 |
| PADI4 | Q9UM07 | 28 |
| PADI2 | Q9Y2J8 | 24 |
| TERT | O14746 | 23 |
| DPP9 | Q86TI2 | 14 |
| MUC2 | Q02817 | 12 |
| RPA3 | P35244 | 10 |
| STN1 | Q9H668 | 8 |
| DSP | P15924 | 4 |
| ACP6 | Q9NPH0 | 3 |
| HTR1E | P28566 | 3 |
| MUC5B | Q9HC84 | 2 |
| DUSP23 | Q9BVJ7 | 2 |
| ABCA3 | Q99758 | 2 |
| LAMP3 | Q9UQV4 | 1 |
| INPP5E | Q9NRR6 | 1 |
| LRRC34 | Q8IZ02 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| IPO11 | Q9UI26 | 93.53 |
| PMPCA | Q10713 | 88.46 |
| ATP11A | P98196 | 83.48 |
| ARHGAP42 | A6NI28 | 75.04 |
| GJA5 | P36382 | 70.35 |
| UMAD1 | C9J7I0 | 61.63 |
| FAM13A | O94988 | 61.00 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 114. Enrichment computed across 25 evidence-associated genes (17 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 17 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Extension of Telomeres | 2 | 70.7× | 0.040 | TERT, STN1 |
| Defective ABCA3 causes SMDP3 | 1 | 671.8× | 0.042 | ABCA3 |
| Telomere Maintenance | 2 | 43.3× | 0.042 | TERT, STN1 |
| Chromosome Maintenance | 2 | 24.9× | 0.065 | TERT, STN1 |
| ARL13B-mediated ciliary trafficking of INPP5E | 1 | 223.9× | 0.085 | INPP5E |
| Diseases associated with surfactant metabolism | 1 | 167.9× | 0.097 | ABCA3 |
| Regulation of MITF-M-dependent genes involved in DNA replication, damage repair and senescence | 1 | 96.0× | 0.103 | TERT |
| Apoptotic cleavage of cell adhesion proteins | 1 | 61.1× | 0.103 | DSP |
| Caspase-mediated cleavage of cytoskeletal proteins | 1 | 56.0× | 0.103 | MAPT |
| Serotonin receptors | 1 | 56.0× | 0.103 | HTR1E |
| Telomere C-strand synthesis initiation | 1 | 48.0× | 0.103 | STN1 |
| Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha) | 1 | 48.0× | 0.103 | RPA3 |
| Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta) | 1 | 48.0× | 0.103 | RPA3 |
| Removal of the Flap Intermediate | 1 | 48.0× | 0.103 | RPA3 |
| Telomere C-strand (Lagging Strand) Synthesis | 1 | 44.8× | 0.103 | STN1 |
| Translesion synthesis by REV1 | 1 | 42.0× | 0.103 | RPA3 |
| Defective GALNT3 causes HFTC | 1 | 42.0× | 0.103 | MUC5B |
| Defective GALNT12 causes CRCS1 | 1 | 42.0× | 0.103 | MUC5B |
| Defective C1GALT1C1 causes TNPS | 1 | 39.5× | 0.103 | MUC5B |
| Translesion synthesis by POLI | 1 | 39.5× | 0.103 | RPA3 |
| Synthesis of PIPs at the Golgi membrane | 1 | 37.3× | 0.103 | INPP5E |
| Removal of the Flap Intermediate from the C-strand | 1 | 37.3× | 0.103 | RPA3 |
| Translesion synthesis by POLK | 1 | 37.3× | 0.103 | RPA3 |
| Processing of SMDT1 | 1 | 37.3× | 0.103 | PMPCA |
| Translesion Synthesis by POLH | 1 | 35.4× | 0.103 | RPA3 |
| ABC transporters in lipid homeostasis | 1 | 35.4× | 0.103 | ABCA3 |
| Diseases of metabolism | 2 | 9.5× | 0.103 | MUC5B, ABCA3 |
| RHOA GTPase cycle | 2 | 8.8× | 0.103 | FAM13A, ARHGAP42 |
| Chromatin modifying enzymes | 2 | 8.5× | 0.103 | PADI2, PADI4 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 23 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| telomere maintenance | 4 | 46.5× | 3e-04 | TERT, RPA3, STN1, LRRC34 |
| RNA-templated transcription | 1 | 732.7× | 0.018 | TERT |
| mitral valve development | 1 | 732.7× | 0.018 | GJA5 |
| septum primum development | 1 | 732.7× | 0.018 | GJA5 |
| atrial ventricular junction remodeling | 1 | 732.7× | 0.018 | GJA5 |
| positive regulation of cell communication by chemical coupling | 1 | 732.7× | 0.018 | GJA5 |
| DNA strand elongation | 1 | 732.7× | 0.018 | TERT |
| positive regulation of protein homooligomerization | 1 | 732.7× | 0.018 | ABCA3 |
| plus-end-directed organelle transport along microtubule | 1 | 732.7× | 0.018 | MAPT |
| atrial cardiac muscle cell to AV node cell communication by electrical coupling | 1 | 732.7× | 0.018 | GJA5 |
| Purkinje myocyte to ventricular cardiac muscle cell communication by electrical coupling | 1 | 732.7× | 0.018 | GJA5 |
| regulation of Purkinje myocyte action potential | 1 | 732.7× | 0.018 | GJA5 |
| siRNA transcription | 1 | 732.7× | 0.018 | TERT |
| regulation of renin secretion into blood stream | 1 | 732.7× | 0.018 | GJA5 |
| negative regulation of lymphocyte chemotaxis | 1 | 732.7× | 0.018 | PADI2 |
| positive regulation of transdifferentiation | 1 | 732.7× | 0.018 | TERT |
| regulation of viral life cycle | 1 | 732.7× | 0.018 | LAMP3 |
| vasomotion | 1 | 732.7× | 0.018 | GJA5 |
| pulmonary valve formation | 1 | 366.4× | 0.020 | GJA5 |
| RNA-templated DNA biosynthetic process | 1 | 366.4× | 0.020 | TERT |
| cell communication by chemical coupling | 1 | 366.4× | 0.020 | GJA5 |
| foramen ovale closure | 1 | 366.4× | 0.020 | GJA5 |
| positive regulation of hair cycle | 1 | 366.4× | 0.020 | TERT |
| SA node cell to atrial cardiac muscle cell communication by electrical coupling | 1 | 366.4× | 0.020 | GJA5 |
| AV node cell to bundle of His cell communication by electrical coupling | 1 | 366.4× | 0.020 | GJA5 |
| bundle of His cell to Purkinje myocyte communication by electrical coupling | 1 | 366.4× | 0.020 | GJA5 |
| regulation of bundle of His cell action potential | 1 | 366.4× | 0.020 | GJA5 |
| regulation of phosphatidylcholine metabolic process | 1 | 366.4× | 0.020 | ABCA3 |
| neurofibrillary tangle assembly | 1 | 366.4× | 0.020 | MAPT |
| negative regulation of protein localization to mitochondrion | 1 | 366.4× | 0.020 | MAPT |
Therapeutics
Drugs indicated or in trials for this disease
No drug has an approved disease-direct ChEMBL indication for this disease.
13 drugs in clinical trials for this disease (phase 2–3, investigational): efficacy not established — a trial record, not an indication.
| Drug | Highest phase |
|---|---|
| Mycophenolate Mofetil | Phase 3 |
| Nintedanib | Phase 3 |
| Rituximab | Phase 3 |
| Tadalafil | Phase 3 |
| Treprostinil | Phase 3 |
| Amitriptyline | Phase 2 |
| Azathioprine | Phase 2 |
| Duloxetine | Phase 2 |
| Gadoterate Meglumine | Phase 2 |
| Pirfenidone | Phase 2 |
| Pomalidomide | Phase 2 |
| Sodium Chloride | Phase 2 |
| Uridine Triphosphate | Phase 2 |
Drug target analysis
Approved (phase 4): 5 · Phase ≥3: 5 · Phased (≥1): 6 · Undrugged: 19
Druggability breadth: 11 of 25 evidence-associated genes (44%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| TERT | BERBERINE |
| PADI4 | CHLORTETRACYCLINE |
| DPP9 | SITAGLIPTIN |
| HTR1E | IMIPRAMINE |
| MAPT | BEPRIDIL |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| MAPT | 449 | 4 |
| HTR1E | 14 | 4 |
| TERT | 10 | 4 |
| DPP9 | 8 | 4 |
| PADI4 | 3 | 4 |
| PADI2 | 1 | 2 |
| MUC5B | 0 | 0 |
| LAMP3 | 0 | 0 |
| ARHGAP42 | 0 | 0 |
| RPA3 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| BERBERINE | 4 | MAPT, TERT |
| DOXORUBICIN | 4 | TERT |
| CHLORTETRACYCLINE | 4 | PADI4 |
| SITAGLIPTIN | 4 | DPP9 |
| VILDAGLIPTIN | 4 | DPP9 |
| TENELIGLIPTIN | 4 | DPP9 |
| LINAGLIPTIN | 4 | DPP9 |
| SAXAGLIPTIN ANHYDROUS | 4 | DPP9 |
| GOSOGLIPTIN | 4 | DPP9 |
| IMIPRAMINE | 4 | HTR1E, MAPT |
| DIHYDROERGOTAMINE MESYLATE | 4 | HTR1E, MAPT |
| AZELASTINE HYDROCHLORIDE | 4 | HTR1E |
| SUMATRIPTAN | 4 | HTR1E |
| BREXPIPRAZOLE | 4 | HTR1E |
| FROVATRIPTAN SUCCINATE | 4 | HTR1E |
| LASMIDITAN | 4 | HTR1E |
| CLOZAPINE | 4 | HTR1E, MAPT |
| BEPRIDIL | 4 | MAPT |
| PHENYLBUTAZONE | 4 | MAPT |
| CEFOTAXIME SODIUM | 4 | MAPT |
| DIENESTROL | 4 | MAPT |
| PROGESTERONE | 4 | MAPT |
| CLOTRIMAZOLE | 4 | MAPT |
| CHOLECALCIFEROL | 4 | MAPT |
| LATANOPROST | 4 | MAPT |
| CHLORTHALIDONE | 4 | MAPT |
| FLUORESCEIN | 4 | MAPT |
| OXCARBAZEPINE | 4 | MAPT |
| NABUMETONE | 4 | MAPT |
| GLIPIZIDE | 4 | MAPT |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 8.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| TERT | 391 | Binding:389, Functional:2 |
| HTR1E | 184 | Binding:161, Functional:20, ADMET:3 |
| MAPT | 184 | Binding:180, Functional:4 |
| DPP9 | 160 | Binding:154, ADMET:6 |
| PADI4 | 86 | Binding:84, Functional:2 |
| PADI2 | 30 | Binding:30 |
| DUSP23 | 6 | Binding:6 |
| DSP | 2 | Binding:2 |
| RPA3 | 1 | Binding:1 |
| PMPCA | 1 | Binding:1 |
| IPO11 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| ATP11A | 7.6.2.1 | P-type phospholipid transporter |
| PADI2 | 3.5.3.15, 3.5.3.6 | protein-arginine deiminase, arginine deiminase |
| PADI4 | 3.5.3.15 | protein-arginine deiminase |
| DPP9 | 3.4.13.19 | membrane dipeptidase |
| PMPCA | 3.4.24.64 | mitochondrial processing peptidase |
| INPP5E | 3.1.3.36 | phosphoinositide 5-phosphatase |
| DUSP23 | 3.1.3.48 | protein-tyrosine-phosphatase |
| ACP6 | 3.1.3.106 | 2-lysophosphatidate phosphatase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| TERT | 391 |
| DPP9 | 160 |
| HTR1E | 184 |
| MAPT | 184 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 24; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| BERBERINE | 4 | MAPT, TERT |
| DOXORUBICIN | 4 | TERT |
| CHLORTETRACYCLINE | 4 | PADI4 |
| SITAGLIPTIN | 4 | DPP9 |
| VILDAGLIPTIN | 4 | DPP9 |
| TENELIGLIPTIN | 4 | DPP9 |
| LINAGLIPTIN | 4 | DPP9 |
| SAXAGLIPTIN ANHYDROUS | 4 | DPP9 |
| GOSOGLIPTIN | 4 | DPP9 |
| IMIPRAMINE | 4 | HTR1E, MAPT |
| DIHYDROERGOTAMINE MESYLATE | 4 | HTR1E, MAPT |
| AZELASTINE HYDROCHLORIDE | 4 | HTR1E |
| SUMATRIPTAN | 4 | HTR1E |
| BREXPIPRAZOLE | 4 | HTR1E |
| FROVATRIPTAN SUCCINATE | 4 | HTR1E |
| LASMIDITAN | 4 | HTR1E |
| CLOZAPINE | 4 | HTR1E, MAPT |
| BEPRIDIL | 4 | MAPT |
| PHENYLBUTAZONE | 4 | MAPT |
| CEFOTAXIME SODIUM | 4 | MAPT |
| DIENESTROL | 4 | MAPT |
| PROGESTERONE | 4 | MAPT |
| CLOTRIMAZOLE | 4 | MAPT |
| CHOLECALCIFEROL | 4 | MAPT |
| LATANOPROST | 4 | MAPT |
| CHLORTHALIDONE | 4 | MAPT |
| FLUORESCEIN | 4 | MAPT |
| OXCARBAZEPINE | 4 | MAPT |
| NABUMETONE | 4 | MAPT |
| GLIPIZIDE | 4 | MAPT |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 5 | TERT, PADI4, DPP9, HTR1E, MAPT |
| B | Phased (≥1) drug, not yet approved | 1 | PADI2 |
| C | Druggable family + PDB, no drug | 4 | INPP5E, DUSP23, ACP6, ABCA3 |
| D | Druggable family + AlphaFold only, no drug | 1 | PMPCA |
| E | Difficult family or no structure, no drug | 14 | MUC5B, LAMP3, ARHGAP42, RPA3, ATP11A, FAM13A, IPO11, STN1, LRRC34, DSP (+4 more) |
Undrugged target profiles
19 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| ATP11A | 0 | DPP9 |
| MUC5B | 0 | — |
| LAMP3 | 0 | — |
| ARHGAP42 | 0 | — |
| RPA3 | 1 | — |
| PMPCA | 1 | — |
| FAM13A | 0 | — |
| IPO11 | 1 | — |
| INPP5E | 0 | — |
| DUSP23 | 6 | — |
| STN1 | 0 | — |
| LRRC34 | 0 | — |
| ACP6 | 0 | — |
| DSP | 2 | — |
| ABCA3 | 0 | — |
| GJA5 | 0 | — |
| FCF1P3 | 0 | — |
| UMAD1 | 0 | — |
| MUC2 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 392.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 284 |
| PHASE2 | 43 |
| PHASE4 | 18 |
| PHASE3 | 15 |
| PHASE2/PHASE3 | 11 |
| PHASE1 | 10 |
| PHASE1/PHASE2 | 7 |
| EARLY_PHASE1 | 4 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT07077486 | PHASE4 | RECRUITING | Effects of Telitacicept vs Cyclophosphamide on Lupus Related Interstitial Lung Disease |
| NCT07319598 | PHASE4 | RECRUITING | A Study to Test Tetrandrine Tablets for Connective Tissue Disease-Related Lung Disease |
| NCT07570888 | PHASE4 | NOT_YET_RECRUITING | This is a Trial Designed to Evaluate the Combination of Nerandomilast With Mycophenolate Across a Wide Variety of Pulmonary Fibrosis Subtypes, With the Aim of Providing Clinicians With Assurance That This is an Appropriate Therapeutic Combination. |
| NCT00625079 | PHASE4 | WITHDRAWN | Pulmonary Hypertension Secondary to Idiopathic Pulmonary Fibrosis And Treatment With Sildenafil |
| NCT00637065 | PHASE4 | UNKNOWN | Bosentan in Pulmonary Hypertension in Interstitial Lung Disease Treatment Study |
| NCT00882817 | PHASE4 | COMPLETED | Pulmonary Rehabilitation in Interstitial Lung Diseases |
| NCT02143687 | PHASE4 | COMPLETED | Patients With Pulmonary Hypertension or Interstitial Lung Disease at Altitude - Effect of Oxygen on Exercise Performance |
| NCT02150616 | PHASE4 | UNKNOWN | Patients With Pulmonary Hypertension or Interstitial Lung Disease at Altitude - Effect of Oxygen on Breathing and Sleep |
| NCT02622022 | PHASE4 | COMPLETED | Palliation of Dyspnea With Morphine in Patients With Interstitial Lung Disease |
| NCT02821689 | PHASE4 | UNKNOWN | Pirfenidone in Progressive Interstitial Lung Disease Associated With Clinically Amyopathic Dermatomyositis |
| NCT04036721 | PHASE4 | SUSPENDED | Coorticosteroid Regimen in Patients With Anti-PD-1/PD-L1 Induced Pneumonitis |
| NCT04311567 | PHASE4 | TERMINATED | Effects of Tofacitinib vs Methotrexate on Rheumatoid Arthritis Interstitial Lung Disease |
| NCT04619680 | PHASE4 | COMPLETED | The Study of the Use of Nintedanib in Slowing Lung Disease in Patients With Fibrotic or Non-Fibrotic Interstitial Lung Disease Related to COVID-19 |
| NCT04928586 | PHASE4 | UNKNOWN | Immunosuppressant Combined With Pirfenidone in CTD-ILD |
| NCT04988282 | PHASE4 | COMPLETED | Systemic Corticosteroids in Treatment of Post-COVID-19 Interstitial Lung Disease |
| NCT05129410 | PHASE4 | UNKNOWN | Clinical Study of MMF in Treatment of IIM-ILD and Its Effect on Peripheral Blood Treg Cells |
| NCT05375435 | PHASE4 | UNKNOWN | Efficacy and Safety of Triple Therapy in Patients With Anti-MDA5 Antibody-positive Dermatomyositis |
| NCT05505409 | PHASE4 | UNKNOWN | Efficacy and Safety of Pirfenidone in CTD-ILD |
| NCT04905693 | PHASE3 | ENROLLING_BY_INVITATION | Extension Study of Inhaled Treprostinil in Subjects With Fibrotic Lung Disease |
| NCT05828953 | PHASE2/PHASE3 | RECRUITING | Anlotinib Capsules in the Treatment for IPF/PF-ILDs |
| NCT05943535 | PHASE3 | RECRUITING | Study of the Efficacy and Safety of Inhaled Treprostinil in Subjects With Progressive Pulmonary Fibrosis (TETON-PPF) |
| NCT06297096 | PHASE3 | RECRUITING | Study of the Efficacy of Nintedanib+Tocilizumab in Patients With Systemic Sclerosis and Interstitial Lung Disease |
| NCT06674148 | PHASE2/PHASE3 | RECRUITING | A Randomized, Double-Blind, Placebo-Controlled, Multicenter Study of the Efficacy and Safety of Qifangfeixian Granules in the Treatment of Connective Tissue Disease-Associated Interstitial Lung Disease (CTD-ILD) |
| NCT06806592 | PHASE3 | RECRUITING | A Study to Test Whether Nerandomilast Helps People With Lungfibrosis Related to Rheumatic Diseases |
| NCT07179380 | PHASE3 | RECRUITING | Efficacy and Safety Study of Treprostinil Palmitil Inhalation Powder (TPIP) in Participants With Pulmonary Hypertension Associated With Interstitial Lung Disease (PH-ILD) |
| NCT07201922 | PHASE3 | RECRUITING | A Study to Test Whether Nerandomilast Can Help Slow Down Changes in the Lung in People With a Family History of Pulmonary Fibrosis |
| NCT07234032 | PHASE3 | NOT_YET_RECRUITING | An Open-Label Extension Study of Treprostinil Palmitil Inhalation Powder (TPIP) in Participants With Pulmonary Hypertension Associated With Interstitial Lung Disease (PH-ILD) |
| NCT07540988 | PHASE3 | NOT_YET_RECRUITING | FIBRONEER-ACT: A Study to Test Whether Nerandomilast Helps People With Fibrosing Interstitial Lung Disease at Risk for Disease Progression |
| NCT07613099 | PHASE3 | NOT_YET_RECRUITING | Evaluation of Fibrotic Disease Activity in Cardiopulmonary Disorders Using 18F-Fibroblast Activation Protein Inhibitor (18F-FAPI-74 PET/CT Imaging) |
| NCT00319033 | PHASE2/PHASE3 | COMPLETED | Open-label Study With Bosentan in Interstitial Lung Disease |
| NCT01424033 | PHASE2/PHASE3 | TERMINATED | A Clinical Trial for CTD-ILD Treatment |
| NCT01570764 | PHASE3 | COMPLETED | Cyclophosphamide Systemic Sclerosis Associated Interstitial Lung Disease |
| NCT01862926 | PHASE2/PHASE3 | COMPLETED | Rituximab Versus Cyclophosphamide in Connective Tissue Disease-ILD |
| NCT01955824 | PHASE2/PHASE3 | COMPLETED | A Trial on Clinical Efficacy of 1% Versus 2% Lignocaine in Cough Suppression and Pain Relief in Patients Undergoing Flexible Bronchoscopy |
| NCT02630316 | PHASE2/PHASE3 | COMPLETED | Safety and Efficacy of Inhaled Treprostinil in Adult PH With ILD Including CPFE |
| NCT02633293 | PHASE2/PHASE3 | TERMINATED | An Open Label Extension Study to Evaluate Inhaled Treprostinil in Adult PH With ILD Including CPFE |
| NCT02896205 | PHASE3 | COMPLETED | Study to Compare the Efficacy of Mycophenolate Mofetil in Systemic Sclerosis Related Early Interstitial Lung Disease |
| NCT03018756 | PHASE3 | COMPLETED | Nebulized Fentanyl in Patients With Mild to Moderate Interstitial Lung Disease and Chronic Dyspnea |
| NCT03726398 | PHASE2/PHASE3 | WITHDRAWN | CompRehensive Phenotypic Characterization of Patients With Scleroderma-Associated ILD and PH |
| NCT03770663 | PHASE3 | UNKNOWN | Cyclophosphamide and Azathioprine vs Tacrolimus in Antisynthetase Syndrome-related Interstitial Lung Disease |
Drugs tested across these trials (top 30)
Related Atlas pages
- Cohort genes: MUC5B, TERT, LAMP3, ARHGAP42, RPA3, ATP11A, PADI2, PADI4, DPP9, PMPCA, FAM13A, IPO11, INPP5E, DUSP23, STN1, LRRC34, ACP6, DSP, ABCA3, GJA5, UMAD1, HTR1E, MAPT, MUC2
- Drugs: Treprostinil, Pirfenidone, Tofacitinib, Amitriptyline, Cyclophosphamide, Sildenafil, Bosentan, Dimercaprol, Gadoterate Meglumine, Nintedanib, Oxygen, Acetylcysteine, Azathioprine, Dabigatran Etexilate, Dexamethasone, Emapalumab, Fentanyl, Hydroxychloroquine, Methylprednisolone, Mycophenolate Mofetil, Pomalidomide, XENON XE-129, HYPERPOLARIZED, Bardoxolone Methyl, Catequentinib, Dabigatran, Ixazomib, Levomenthol, Morphine, Regramostim, Transcrocetinate