Intrahepatic cholangiocarcinoma
diseaseOn this page
Also known as cholangiocarcinoma, intrahepatic, malignantICCIHCHintrahepatic bile duct cancer (cholangiocarcinoma)intrahepatic bile duct carcinomaintrahepatic carcinoma of bile ductintrahepatic carcinoma of the bile ductintrahepatic cholangiocarcinoma (bile duct cancer)intrahepatic Cholangiocellular carcinoma
Summary
Intrahepatic cholangiocarcinoma (MONDO:0003210) is a disease (an umbrella term covering 6 Mondo subtypes) with 5 cohort genes and 192 clinical trials. Molecularly, FGFR2::v Fusion OR FGFR2::? Fusion confers sensitivity to Futibatinib in Intrahepatic Cholangiocarcinoma (CIViC Level A); 8 further subtype–drug associations are mapped below. Top therapeutic interventions include lenvatinib, floxuridine, and pemigatinib.
At a glance
- Umbrella term: 6 Mondo subtypes
- Cohort genes: 5
- ClinVar variants: 3
- Clinical trials: 192
- Precision-medicine evidence (CIViC): 9 subtype–drug associations
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | intrahepatic cholangiocarcinoma |
| Mondo ID | MONDO:0003210 |
| EFO | EFO:1001961 |
| DOID | DOID:4928 |
| ICD-10-CM | C22.1 |
| ICD-11 | 1253728223, 387909164 |
| NCIT | C35417 |
| SNOMED CT | 109842005 |
| UMLS | C0345905 |
| MedGen | 87521 |
| GARD | 0006042 |
| Is cancer (heuristic) | no |
Also known as: cholangiocarcinoma, intrahepatic, malignant · ICC · IHCH · intrahepatic bile duct cancer (cholangiocarcinoma) · intrahepatic bile duct carcinoma · intrahepatic carcinoma of bile duct · intrahepatic carcinoma of the bile duct · intrahepatic cholangiocarcinoma · intrahepatic cholangiocarcinoma (bile duct cancer) · intrahepatic Cholangiocellular carcinoma
Data availability: 3 ClinVar variants · 90 cell lines.
Disease family
An umbrella term covering 6 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › digestive system disorder › digestive system cancer › liver cancer › biliary tract cancer › bile duct cancer › intrahepatic bile duct cancer › intrahepatic cholangiocarcinoma
Related subtypes (1): intrahepatic bile duct adenosquamous carcinoma
Subtypes (6): hilar cholangiocarcinoma, mucinous intrahepatic cholangiocarcinoma, cholangiolocellular carcinoma, signet ring cell intrahepatic cholangiocarcinoma, sarcomatous intrahepatic cholangiocarcinoma, perihilar intrahepatic cholangiocarcinoma
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
3 retrieved; paginated sample, class counts are floors:
2 uncertain significance, 1 conflicting classifications of pathogenicity
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 133537 | NM_000038.6(APC):c.8332G>T (p.Ala2778Ser) | APC | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 482375 | NM_000038.6(APC):c.4440G>C (p.Gln1480His) | APC | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 559959 | NM_000038.6(APC):c.8461G>A (p.Asp2821Asn) | APC | Uncertain significance | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 52 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| BRAF | Orphanet:1340 | Cardiofaciocutaneous syndrome |
| BRAF | Orphanet:146 | Differentiated thyroid carcinoma |
| BRAF | Orphanet:251615 | Pilomyxoid astrocytoma |
| BRAF | Orphanet:389 | Langerhans cell histiocytosis |
| BRAF | Orphanet:500 | Noonan syndrome with multiple lentigines |
| BRAF | Orphanet:54595 | Craniopharyngioma |
| BRAF | Orphanet:58017 | Classic hairy cell leukemia |
| BRAF | Orphanet:626 | Large/giant congenital melanocytic nevus |
| BRAF | Orphanet:648 | Noonan syndrome |
| BRAF | Orphanet:840 | Syringocystadenoma papilliferum |
| BRAF | Orphanet:96253 | Cushing disease |
| TP53 | Orphanet:1333 | Familial pancreatic carcinoma |
| TP53 | Orphanet:145 | Hereditary breast and/or ovarian cancer syndrome |
| TP53 | Orphanet:1501 | Adrenocortical carcinoma |
| TP53 | Orphanet:210159 | Adult hepatocellular carcinoma |
| TP53 | Orphanet:251576 | Gliosarcoma |
| TP53 | Orphanet:251579 | Giant cell glioblastoma |
| TP53 | Orphanet:251899 | Choroid plexus carcinoma |
| TP53 | Orphanet:2807 | Papilloma of choroid plexus |
| TP53 | Orphanet:293199 | Pleomorphic rhabdomyosarcoma |
| TP53 | Orphanet:3318 | Essential thrombocythemia |
| TP53 | Orphanet:524 | Li-Fraumeni syndrome |
| TP53 | Orphanet:52688 | Myelodysplastic syndrome |
| TP53 | Orphanet:585909 | B-lymphoblastic leukemia/lymphoma with t(9;22)(q34.1;q11.2) |
| TP53 | Orphanet:667662 | Breast implant-associated anaplastic large cell lymphoma |
| TP53 | Orphanet:668 | Osteosarcoma |
| TP53 | Orphanet:67038 | B-cell chronic lymphocytic leukemia |
| TP53 | Orphanet:70573 | Small cell lung cancer |
| TP53 | Orphanet:96253 | Cushing disease |
| TP53 | Orphanet:99756 | Alveolar rhabdomyosarcoma |
| TP53 | Orphanet:99757 | Embryonal rhabdomyosarcoma |
| GNAS | Orphanet:189427 | Cushing syndrome due to bilateral macronodular adrenocortical disease |
| GNAS | Orphanet:2762 | Progressive osseous heteroplasia |
| GNAS | Orphanet:562 | McCune-Albright syndrome |
| GNAS | Orphanet:57782 | Mazabraud syndrome |
| GNAS | Orphanet:79443 | Pseudohypoparathyroidism type 1A |
| GNAS | Orphanet:79444 | Pseudohypoparathyroidism type 1C |
| GNAS | Orphanet:79445 | Pseudopseudohypoparathyroidism |
| GNAS | Orphanet:93276 | Polyostotic fibrous dysplasia |
| GNAS | Orphanet:93277 | Monostotic fibrous dysplasia |
| GNAS | Orphanet:94089 | Pseudohypoparathyroidism type 1B |
| IDH1 | Orphanet:163634 | Maffucci syndrome |
| IDH1 | Orphanet:251576 | Gliosarcoma |
| IDH1 | Orphanet:251579 | Giant cell glioblastoma |
| IDH1 | Orphanet:296 | Ollier disease |
| IDH1 | Orphanet:86845 | Acute myeloid leukaemia with myelodysplasia-related features |
| IDH1 | Orphanet:99646 | Metaphyseal chondromatosis with D-2-hydroxyglutaric aciduria |
| APC | Orphanet:220460 | Attenuated familial adenomatous polyposis |
| APC | Orphanet:261584 | 5q22 microdeletion syndrome |
| APC | Orphanet:314022 | Gastric adenocarcinoma and proximal polyposis of the stomach |
Cohort genes → proteins
5 cohort genes, 5 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| civic_only | 4 |
| multi_evidence | 1 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| BRAF | HGNC:1097 | ENSG00000157764 | P15056 | Serine/threonine-protein kinase B-raf | civic_evidence |
| TP53 | HGNC:11998 | ENSG00000141510 | P04637 | Cellular tumor antigen p53 | civic_evidence |
| GNAS | HGNC:4392 | ENSG00000087460 | O95467 | Neuroendocrine secretory protein 55 | civic_evidence |
| IDH1 | HGNC:5382 | ENSG00000138413 | O75874 | Isocitrate dehydrogenase [NADP] cytoplasmic | civic_evidence |
| APC | HGNC:583 | ENSG00000134982 | P25054 | Adenomatous polyposis coli protein | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| BRAF | Serine/threonine-protein kinase B-raf | Protein kinase involved in the transduction of mitogenic signals from the cell membrane to the nucleus. |
| TP53 | Cellular tumor antigen p53 | Multifunctional transcription factor that induces cell cycle arrest, DNA repair or apoptosis upon binding to its target DNA sequence. |
| IDH1 | Isocitrate dehydrogenase [NADP] cytoplasmic | Catalyzes the NADP(+)-dependent oxidative decarboxylation of isocitrate (D-threo-isocitrate) to 2-ketoglutarate (2-oxoglutarate), which is required by other enzymes such as the phytanoyl-CoA dioxygenase. |
| APC | Adenomatous polyposis coli protein | Tumor suppressor. |
Protein-family classification
Druggable: 2 · Difficult: 1 · Unknown: 2 · Druggable fraction: 0.4
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Kinase | 1 | 5.5× | 0.634 |
| Enzyme (other) | 1 | 2.4× | 0.634 |
| Transcription factor | 1 | 1.6× | 0.634 |
| Other/Unknown | 2 | 0.7× | 0.877 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| BRAF | Kinase | yes | 2.7.10.2 | Prot_kinase_dom, Ser-Thr/Tyr_kinase_cat_dom, PKC_DAG/PE |
| TP53 | Transcription factor | no | p53_tumour_suppressor, p53-like_TF_DNA-bd_sf, p53_tetrameristn | |
| GNAS | Other/Unknown | no | NESP55, Gprotein_alpha_S, Gprotein_alpha_su | |
| IDH1 | Enzyme (other) | yes | 1.1.1.42 | Isocitrate_DH_NADP, IsoCit/isopropylmalate_DH_CS, IsoPropMal-DH-like_dom |
| APC | Other/Unknown | no | Armadillo, APC_rpt, SAMP |
Expression context
Cohort genes with no expression data: 0.
5 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 5 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| buccal mucosa cell | 1 |
| calcaneal tendon | 1 |
| colonic epithelium | 1 |
| ganglionic eminence | 1 |
| tendon of biceps brachii | 1 |
| ventricular zone | 1 |
| Brodmann (1909) area 46 | 1 |
| postcentral gyrus | 1 |
| type B pancreatic cell | 1 |
| adrenal tissue | 1 |
| corpus epididymis | 1 |
| jejunal mucosa | 1 |
| medial globus pallidus | 1 |
| substantia nigra pars compacta | 1 |
| substantia nigra pars reticulata | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| BRAF | 265 | ubiquitous | marker | buccal mucosa cell, colonic epithelium, calcaneal tendon |
| TP53 | 223 | ubiquitous | marker | ventricular zone, ganglionic eminence, tendon of biceps brachii |
| GNAS | 312 | ubiquitous | marker | type B pancreatic cell, postcentral gyrus, Brodmann (1909) area 46 |
| IDH1 | 294 | ubiquitous | marker | corpus epididymis, jejunal mucosa, adrenal tissue |
| APC | 297 | ubiquitous | marker | substantia nigra pars compacta, substantia nigra pars reticulata, medial globus pallidus |
Protein interactions among cohort
Intra-cohort edges: 2.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| TP53 | 22,736 |
| BRAF | 7,394 |
| IDH1 | 5,464 |
| APC | 2,903 |
| GNAS | 410 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| BRAF | TP53 | string_interaction |
| IDH1 | TP53 | string_interaction |
Structural data
PDB: 5 · AlphaFold-only: 0 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| GNAS | O95467 | 490 |
| TP53 | P04637 | 313 |
| BRAF | P15056 | 131 |
| IDH1 | O75874 | 61 |
| APC | P25054 | 31 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 130. Enrichment computed across 5 evidence-associated genes (5 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Abnormal conversion of 2-oxoglutarate to 2-hydroxyglutarate | 1 | 2284.0× | 0.014 | IDH1 |
| APC truncation mutants are not K63 polyubiquitinated | 1 | 2284.0× | 0.014 | APC |
| Loss of function of TP53 in cancer due to loss of tetramerization ability | 1 | 2284.0× | 0.014 | TP53 |
| Ovarian tumor domain proteases | 2 | 111.4× | 0.014 | TP53, APC |
| NADPH regeneration | 1 | 1142.0× | 0.019 | IDH1 |
| Regulation of TP53 Expression | 1 | 1142.0× | 0.019 | TP53 |
| NFE2L2 regulating TCA cycle genes | 1 | 761.3× | 0.020 | IDH1 |
| Transcriptional activation of cell cycle inhibitor p21 | 1 | 571.0× | 0.020 | TP53 |
| Signaling by MRAS-complex mutants | 1 | 571.0× | 0.020 | BRAF |
| Signalling to p38 via RIT and RIN | 1 | 456.8× | 0.020 | BRAF |
| Activation of NOXA and translocation to mitochondria | 1 | 380.7× | 0.020 | TP53 |
| Negative feedback regulation of MAPK pathway | 1 | 380.7× | 0.020 | BRAF |
| ARMS-mediated activation | 1 | 326.3× | 0.020 | BRAF |
| RUNX3 regulates CDKN1A transcription | 1 | 326.3× | 0.020 | TP53 |
| Prolonged ERK activation events | 1 | 285.5× | 0.020 | BRAF |
| SHOC2 M1731 mutant abolishes MRAS complex function | 1 | 285.5× | 0.020 | BRAF |
| Gain-of-function MRAS complexes activate RAF signaling | 1 | 285.5× | 0.020 | BRAF |
| PI5P Regulates TP53 Acetylation | 1 | 253.8× | 0.020 | TP53 |
| Activation of PUMA and translocation to mitochondria | 1 | 228.4× | 0.020 | TP53 |
| Signaling by FGFR3 | 1 | 228.4× | 0.020 | BRAF |
| Signaling by AXIN mutants | 1 | 207.6× | 0.020 | APC |
| Signaling by CTNNB1 phospho-site mutants | 1 | 207.6× | 0.020 | APC |
| Signaling by APC mutants | 1 | 207.6× | 0.020 | APC |
| Signaling by AMER1 mutants | 1 | 207.6× | 0.020 | APC |
| Signaling by FGFR4 | 1 | 207.6× | 0.020 | BRAF |
| Frs2-mediated activation | 1 | 190.3× | 0.020 | BRAF |
| TP53 Regulates Transcription of Caspase Activators and Caspases | 1 | 190.3× | 0.020 | TP53 |
| TP53 Regulates Transcription of Death Receptors and Ligands | 1 | 190.3× | 0.020 | TP53 |
| Urea cycle | 1 | 175.7× | 0.020 | TP53 |
| APC truncation mutants have impaired AXIN binding | 1 | 163.1× | 0.020 | APC |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| negative regulation of helicase activity | 1 | 3370.4× | 0.009 | TP53 |
| regulation of phospholipid catabolic process | 1 | 3370.4× | 0.009 | IDH1 |
| cellular response to actinomycin D | 1 | 3370.4× | 0.009 | TP53 |
| regulation of intrinsic apoptotic signaling pathway by p53 class mediator | 1 | 3370.4× | 0.009 | TP53 |
| negative regulation of G1 to G0 transition | 1 | 3370.4× | 0.009 | TP53 |
| glyoxylate cycle | 1 | 1685.2× | 0.009 | IDH1 |
| positive regulation of mitochondrial membrane permeability | 1 | 1685.2× | 0.009 | TP53 |
| regulation of phospholipid biosynthetic process | 1 | 1685.2× | 0.009 | IDH1 |
| oligodendrocyte apoptotic process | 1 | 1685.2× | 0.009 | TP53 |
| negative regulation of glucose catabolic process to lactate via pyruvate | 1 | 1685.2× | 0.009 | TP53 |
| negative regulation of pentose-phosphate shunt | 1 | 1685.2× | 0.009 | TP53 |
| obsolete homolactic fermentation | 1 | 1123.5× | 0.009 | TP53 |
| adenylate cyclase-activating G protein-coupled bile acid receptor signaling pathway | 1 | 1123.5× | 0.009 | GNAS |
| CD4-positive or CD8-positive, alpha-beta T cell lineage commitment | 1 | 1123.5× | 0.009 | BRAF |
| signal transduction by p53 class mediator | 1 | 1123.5× | 0.009 | TP53 |
| negative regulation of miRNA processing | 1 | 1123.5× | 0.009 | TP53 |
| intrinsic apoptotic signaling pathway in response to hypoxia | 1 | 1123.5× | 0.009 | TP53 |
| regulation of fibroblast apoptotic process | 1 | 1123.5× | 0.009 | TP53 |
| T cell proliferation involved in immune response | 1 | 842.6× | 0.009 | TP53 |
| positive regulation of programmed necrotic cell death | 1 | 842.6× | 0.009 | TP53 |
| response to parathyroid hormone | 1 | 842.6× | 0.009 | GNAS |
| oxidative stress-induced premature senescence | 1 | 842.6× | 0.009 | TP53 |
| B cell lineage commitment | 1 | 674.1× | 0.009 | TP53 |
| T cell lineage commitment | 1 | 674.1× | 0.009 | TP53 |
| isocitrate metabolic process | 1 | 674.1× | 0.009 | IDH1 |
| NADPH regeneration | 1 | 674.1× | 0.009 | IDH1 |
| adenylate cyclase-activating serotonin receptor signaling pathway | 1 | 674.1× | 0.009 | GNAS |
| mRNA transcription | 1 | 674.1× | 0.009 | TP53 |
| positive regulation of RNA polymerase II transcription preinitiation complex assembly | 1 | 674.1× | 0.009 | TP53 |
| positive regulation of axon regeneration | 1 | 674.1× | 0.009 | BRAF |
Therapeutics
Drugs indicated for this disease
0 approved, 11 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Bortezomib | Phase 3 (in late-stage trials) |
| Capecitabine | Phase 3 (in late-stage trials) |
| Carboplatin | Phase 3 (in late-stage trials) |
| Cisplatin | Phase 3 (in late-stage trials) |
| Fluorouracil | Phase 3 (in late-stage trials) |
| Gemcitabine | Phase 3 (in late-stage trials) |
| Irinotecan | Phase 3 (in late-stage trials) |
| Lenvatinib | Phase 3 (in late-stage trials) |
| Oxaliplatin | Phase 3 (in late-stage trials) |
| Tislelizumab | Phase 3 (in late-stage trials) |
| Toripalimab | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Adebrelimab, Atezolizumab, Bevacizumab, Bintrafusp Alfa, Cabozantinib, Cadonilimab, Camrelizumab, Dexamethasone, Durvalumab, Famitinib, Floxuridine, Paclitaxel, Perflutren, Ramucirumab, Regorafenib, Rivoceranib, Sintilimab, Surufatinib, Tremelimumab.
Drug target analysis
Approved (phase 4): 3 · Phase ≥3: 3 · Phased (≥1): 3 · Undrugged: 2
Druggability breadth: 5 of 5 evidence-associated genes (100%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| BRAF | VEMURAFENIB |
| TP53 | NITROFURANTOIN |
| IDH1 | ENASIDENIB |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| TP53 | 196 | 4 |
| BRAF | 48 | 4 |
| IDH1 | 10 | 4 |
| GNAS | 0 | 0 |
| APC | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| VEMURAFENIB | 4 | BRAF |
| PONATINIB | 4 | BRAF |
| FEDRATINIB | 4 | BRAF |
| SORAFENIB | 4 | BRAF |
| DASATINIB ANHYDROUS | 4 | BRAF |
| RUXOLITINIB | 4 | BRAF |
| INFIGRATINIB PHOSPHATE | 4 | BRAF |
| INFIGRATINIB | 4 | BRAF |
| REGORAFENIB | 4 | BRAF |
| DABRAFENIB | 4 | BRAF |
| COBIMETINIB | 4 | BRAF |
| NILOTINIB | 4 | BRAF |
| ABEMACICLIB | 4 | BRAF |
| ENCORAFENIB | 4 | BRAF |
| TOVORAFENIB | 4 | BRAF |
| PAZOPANIB | 4 | BRAF |
| DASATINIB | 4 | BRAF |
| ERLOTINIB | 4 | BRAF |
| GEFITINIB | 4 | BRAF |
| IMATINIB | 4 | BRAF |
| NITROFURANTOIN | 4 | TP53 |
| DIOSMIN | 4 | TP53 |
| VERTEPORFIN | 4 | TP53 |
| CANDESARTAN CILEXETIL | 4 | TP53 |
| DIENESTROL | 4 | TP53 |
| CLOTRIMAZOLE | 4 | TP53 |
| COLCHICINE | 4 | TP53 |
| NABUMETONE | 4 | TP53 |
| SALMETEROL XINAFOATE | 4 | TP53 |
| AMIODARONE HYDROCHLORIDE | 4 | TP53 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 2.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| BRAF | 1,442 | Binding:1400, Functional:37, ADMET:5 |
| TP53 | 869 | Binding:775, ADMET:83, Functional:10, Toxicity:1 |
| IDH1 | 488 | Binding:475, Functional:12, ADMET:1 |
| APC | 24 | Binding:24 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| BRAF | 2.7.10.2, 2.7.11.1 | non-specific protein-tyrosine kinase, non-specific serine/threonine protein kinase |
| IDH1 | 1.1.1.42 | isocitrate dehydrogenase (NADP+) |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| BRAF | 1,442 |
| TP53 | 869 |
| IDH1 | 488 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 5; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
28 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| VEMURAFENIB | 4 | BRAF |
| PONATINIB | 4 | BRAF |
| FEDRATINIB | 4 | BRAF |
| SORAFENIB | 4 | BRAF |
| DASATINIB ANHYDROUS | 4 | BRAF |
| RUXOLITINIB | 4 | BRAF |
| INFIGRATINIB | 4 | BRAF |
| REGORAFENIB | 4 | BRAF |
| DABRAFENIB | 4 | BRAF |
| NILOTINIB | 4 | BRAF |
| ABEMACICLIB | 4 | BRAF |
| ENCORAFENIB | 4 | BRAF |
| TOVORAFENIB | 4 | BRAF |
| PAZOPANIB | 4 | BRAF |
| DASATINIB | 4 | BRAF |
| ERLOTINIB | 4 | BRAF |
| GEFITINIB | 4 | BRAF |
| IMATINIB | 4 | BRAF |
| NITROFURANTOIN | 4 | TP53 |
| DIOSMIN | 4 | TP53 |
| VERTEPORFIN | 4 | TP53 |
| CANDESARTAN CILEXETIL | 4 | TP53 |
| DIENESTROL | 4 | TP53 |
| CLOTRIMAZOLE | 4 | TP53 |
| COLCHICINE | 4 | TP53 |
| NABUMETONE | 4 | TP53 |
| SALMETEROL XINAFOATE | 4 | TP53 |
| AMIODARONE HYDROCHLORIDE | 4 | TP53 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 3 | BRAF, TP53, IDH1 |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 2 | GNAS, APC |
Undrugged target profiles
2 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| GNAS | 0 | — |
| APC | 24 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 192.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| PHASE2 | 100 |
| Not specified | 52 |
| PHASE1 | 14 |
| PHASE3 | 9 |
| PHASE1/PHASE2 | 9 |
| PHASE2/PHASE3 | 4 |
| EARLY_PHASE1 | 3 |
| PHASE4 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT06417606 | PHASE4 | NOT_YET_RECRUITING | Lenvatinib and Adebrelimab Combined With GEMOX in the Perioperative Treatment of Potentially Resectable Intrahepatic Cholangiocarcinoma |
| NCT04353375 | PHASE2/PHASE3 | RECRUITING | HMPL-453 Tartrate in Advanced Intrahepatic Cholangiocarcinoma |
| NCT04669496 | PHASE2/PHASE3 | ACTIVE_NOT_RECRUITING | Phase II-III Clinical Trial of PD1 Antibody (Toripalimab), Lenvatinib and GEMOX Neoadjuvant Treatment for Resectable Intrahepatic Cholangiocarcinoma With High-risk Recurrence Factors |
| NCT05342194 | PHASE3 | RECRUITING | Toripalimab Plus Lenvatinib and Gemcitabine-based Chemotherapy in 1L Treatment of Advanced ICC: a Phase III Study |
| NCT07328919 | PHASE3 | NOT_YET_RECRUITING | Efficacy and Safety of TT-00420 (Tinengotinib) Tablets Versus Chemotherapy in Patients With Advanced Intrahepatic Cholangiocarcinoma Harboring FGFR2 Fusions/Rearrangements or Mutations |
| NCT02200042 | PHASE3 | TERMINATED | Radiation Therapy vs. Observation Following Gemcitabine and Cisplatin for Inoperable Localized Liver Cancer |
| NCT02807181 | PHASE2/PHASE3 | TERMINATED | SIRT Followed by CIS-GEM Chemotherapy Versus CIS-GEM Chemotherapy Alone as 1st Line Treatment of Patients With Unresectable Intrahepatic Cholangiocarcinoma |
| NCT03081039 | PHASE3 | WITHDRAWN | A Study of Cisplatin or Carboplatin With Gemcitabine Versus Gemcitabine Alone as Adjuvant Therapy in Patients With Resected or Ablation Intra-Hepatic Cholangiocarcinoma |
| NCT03086993 | PHASE2/PHASE3 | UNKNOWN | Percutaneous Hepatic Perfusion vs. Cisplatin/Gemcitabine in Patients With Intrahepatic Cholangiocarcinoma |
| NCT03345303 | PHASE3 | UNKNOWN | Bortezomib in Intrahepatic Cholangiocellular Carcinoma |
| NCT03768414 | PHASE3 | COMPLETED | Gemcitabine Hydrochloride and Cisplatin With or Without Nab-Paclitaxel in Treating Patients With Newly Diagnosed Advanced Biliary Tract Cancers |
| NCT03771846 | PHASE3 | UNKNOWN | HAIC Versus Systemic Chemotherapy for Unresectable ICC |
| NCT03940378 | PHASE3 | UNKNOWN | Treatment of Advanced Intrahepatic Cholangiocarcinoma |
| NCT04961970 | PHASE3 | UNKNOWN | HAIC With FOLFOX Versus Systemic Chemotherapy With GP for Unresectable ICC |
| NCT02834013 | PHASE2 | ACTIVE_NOT_RECRUITING | Nivolumab and Ipilimumab in Treating Patients With Rare Tumors |
| NCT03942328 | PHASE1/PHASE2 | RECRUITING | Modified Immune Cells (Autologous Dendritic Cells) and a Vaccine (Prevnar) Combined With Immune Checkpoint Inhibition After High-Dose External Beam Radiation Therapy in Treating Patients With Unresectable Liver Cancer |
| NCT04175912 | PHASE2 | ACTIVE_NOT_RECRUITING | Testing the Combination of Pevonedistat With Chemotherapy for Bile Duct Cancer of the Liver |
| NCT04238637 | PHASE2 | ACTIVE_NOT_RECRUITING | Immunotherapy Combined With Y-90 SIRT Therapy in Advanced Stage Intrahepatic Biliary Tract Cancer (BTC) |
| NCT04251715 | PHASE2 | ACTIVE_NOT_RECRUITING | mFOLFIRINOX Followed by Hepatic Arterial Infusion of Floxuridine and Dexamethasone With Systemic mFOLFIRI for Unresectable Liver-dominant Intrahepatic Cholangiocarcinoma |
| NCT04295317 | PHASE2 | ACTIVE_NOT_RECRUITING | PD-1 Antibody (SHR-1210) Plus Capecitabine in Patients with Intrahepatic Cholangiocarcinoma After Surgery |
| NCT04299581 | PHASE2 | RECRUITING | Cryoablation Combined with Anti-PD-1 Antibody in Patients with Advanced Intrahepatic Cholangiocarcinoma |
| NCT04891289 | PHASE2 | RECRUITING | Gemcitabine and Oxaliplatin Chemotherapy With or Without a Floxuridine and Dexamethasone Pump in People With Cholangiocarcinoma That Cannot Be Removed With Surgery |
| NCT04941287 | PHASE2 | ACTIVE_NOT_RECRUITING | Testing A New Combination of Anti-cancer Immune Therapies, Atezolizumab and CDX-1127 (Varlilumab) With or Without the Addition of a Third Anti-cancer Drug, Cobimetinib, for Advanced-Stage Biliary Tract Cancer |
| NCT04954781 | PHASE2 | RECRUITING | TACE Combined With Tislelizumab in Patients With Advanced Intrahepatic Cholangiocarcinoma |
| NCT05010681 | PHASE2 | RECRUITING | Lenvatinib Plus Sintilimab in Patients With Immune Checkpoint Inhibitor Previously Treated Advanced Liver Cancer |
| NCT05174650 | PHASE2 | ACTIVE_NOT_RECRUITING | Treatment of Atezolizumab and Derazantinib in Patients With Advanced iCCA With FGFR2 Fusions/Rearrangements |
| NCT05223816 | PHASE2 | RECRUITING | An Open-Label, Multiple-Center, Phase IIa/IIb Clinical Trial to Evaluate the Efficacy, Safety and Tolerability of VG161 as Monotherapy and in Combination With Nivolumab for Treatment of Patients With Hepatocellular Carcinoma or Intrahepatic Cholangiocarcinoma |
| NCT05286814 | PHASE2 | RECRUITING | PDS01ADC in Combination With Hepatic Artery Infusion Pump (HAIP) and Systemic Therapy for Subjects With Metastatic Colorectal Cancer, Intrahepatic Cholangiocarcinoma, or Metastatic Adrenocortical Carcinoma |
| NCT05422690 | PHASE2 | RECRUITING | The Purpose of This Research Study is to See if Combining Gemcitabine, Cisplatin and Durvalumab Chemotherapy Treatments With a Direct Tumor Therapy Yittrium-90 (Y-90) Will Work Better Together to Shrink Tumors and Control Cancer |
| NCT05557578 | PHASE2 | RECRUITING | GOT Applied As Neoadjuvant Regimen for Patients of Resectable ICC with High-risk Factors of Recurrence |
| NCT05564403 | PHASE2 | ACTIVE_NOT_RECRUITING | Study of Chemotherapy, With or Without Binimetinib in Advanced Biliary Tract Cancers in 2nd Line Setting (A ComboMATCH Treatment Trial) |
| NCT05655949 | PHASE2 | RECRUITING | Y-90 With Durvalumab/Gem/Cis in Intrahepatic Cholangio |
| NCT05678270 | PHASE2 | RECRUITING | A Study of ICP-192 in Patients With FGFR2-Rearranged Unresectable or Metastatic Intrahepatic Cholangiocarcinoma |
| NCT06178588 | PHASE2 | ACTIVE_NOT_RECRUITING | Sacituzumab Govitecan for the Treatment for Patients With Locally Advanced, Recurrent, or Metastatic Cholangiocarcinoma |
| NCT06208462 | PHASE2 | RECRUITING | Neoadjuvant Therapy of HAIC(GEMOX) Combined With Adebrelimab and Lenvatinib for Resectable Intrahepatic Cholangiocarcinoma With High-risk Recurrence Factors |
| NCT06239532 | PHASE2 | ACTIVE_NOT_RECRUITING | HAIC Sequential TAE Combined With Tislelizumab and Surufatinib in Unresectable Intrahepatic Cholangiocarcinoma |
| NCT06296563 | PHASE2 | RECRUITING | Perioperative Treatment of Resectable Intrahepatic Cholangiocarcinoma With the Combination of Adebrelimab and Apatinib and HAIC |
| NCT06298968 | PHASE2 | RECRUITING | Combined Therapy Using Gemcitabine and Cisplatin Chemotherapy, Lenvatinib and Adebrelimab for Patients With Advanced and Unresectable Intrahepatic Cholangiocarcinoma |
| NCT06313203 | PHASE2 | RECRUITING | HAI-Floxuridine, or SIRT, Combined With Gemox For Patients With Intra-Hepatic Cholangiocarcinoma Not Amenable to Resection (TOMCAT) |
| NCT06375642 | PHASE2 | NOT_YET_RECRUITING | A Single Arm, Single Centered Phase II Trial on the Combination of Adebrelimab, Surufatinib and Irinotecan Liposome-based HAIC in Advanced iCC |
Drugs tested across these trials (top 30)
Precision-medicine subtype map (CIViC)
Drug × molecular subtype: 9 predictive associations from 10 curated evidence items; also 1 prognostic.
| Molecular subtype | Therapy | Effect | Level | CIViC |
|---|---|---|---|---|
| FGFR2::v Fusion OR FGFR2::? Fusion | Futibatinib | Sensitivity/Response | CIViC A | EID11609 +1 |
| FGFR2::BICC1 Fusion | Futibatinib | Sensitivity/Response | CIViC B | EID11610 |
| FGFR2::v Fusion OR FGFR2::? Fusion | Derazantinib | Sensitivity/Response | CIViC B | EID7329 |
| BRAF V600E | Dabrafenib + Trametinib | Sensitivity/Response | CIViC C | EID5903 |
| BRAF V600E | Trametinib + Dabrafenib | Sensitivity/Response | CIViC C | EID5904 |
| FGFR2 Y376C | AZD-4547 | Sensitivity/Response | CIViC C | EID8317 |
| FGFR2::KIAA1217 Fusion | Futibatinib | Sensitivity/Response | CIViC C | EID11611 |
| IDH1 R132 | Dasatinib | Sensitivity/Response | CIViC D | EID6439 |
| TP53 R175H | MDM2 Inhibitor AMGMDS3 | Resistance | CIViC D | EID10075 |
Related Atlas pages
- Cohort genes: BRAF, TP53, GNAS, IDH1, APC
- Drugs: Lenvatinib, Floxuridine, Pemigatinib, Cobimetinib, Gemcitabine, Binimetinib, Bortezomib, Cabozantinib, Calcitriol, Chlorotrianisene, Enasidenib, Infigratinib Phosphate, Levamisole, Melphalan, Perflutren, Ramucirumab, Sacituzumab Govitecan, TECHNETIUM TC 99M SULFUR COLLOID, Tegafur, Toripalimab, Sintilimab, Adebrelimab, Famitinib, Surufatinib, Bintrafusp Alfa, Catequentinib, CM-4307, Enlonstobart, Guadecitabine, Pevonedistat, Futibatinib, Dasatinib