Irritable bowel syndrome

disease
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Also known as IBSirritable colonmucus colitisspastic colon

Summary

Irritable bowel syndrome (MONDO:0005052) is a disease with 25 cohort genes (231 GWAS associations across 69 studies) and 805 clinical trials. Top therapeutic interventions include rifaximin, eluxadoline, and inulin.

At a glance

  • Cohort genes: 25
  • GWAS associations: 231
  • Clinical trials: 805

Clinical features

No curated clinical features (Orphanet) for this disease.

Identifiers

Disease identifiers

FieldValue
Canonical nameirritable bowel syndrome
Mondo IDMONDO:0005052
EFOEFO:0000555
MeSHD043183
DOIDDOID:9778
ICD-10-CMK58
ICD-111158238623
NCITC82343
SNOMED CT10743008
UMLSC0022104
MedGen5897
Is cancer (heuristic)no

Also known as: IBS · irritable bowel syndrome · irritable colon · mucus colitis · spastic colon

Data availability: 231 GWAS associations (69 studies).

Disease family

Classification path: disease › human disease › disease by body system or component › syndromic diseaseirritable bowel syndrome

Related subtypes (1183): Neu-Laxova syndrome, inclusion body myopathy with Paget disease of bone and frontotemporal dementia, syndromic intellectual disability, abdominal obesity-metabolic syndrome, fibrogenesis imperfecta ossium, Fanconi renotubular syndrome, palindromic rheumatism, hepatorenal syndrome, Potter sequence, vertebral artery insufficiency, sick sinus syndrome, Tietze syndrome, toxic shock syndrome, capillary leak syndrome, dumping syndrome, FG syndrome, basilar artery insufficiency, long QT syndrome, Treacher-Collins syndrome, superior mesenteric artery syndrome, disappearing bone disease, Brown-Sequard syndrome, Froelich syndrome, diffuse infiltrative lymphocytosis syndrome, Capgras syndrome, compartment syndrome, central sleep apnea syndrome, nephrotic syndrome, myalgic encephalomeyelitis/chronic fatigue syndrome, acute coronary syndrome, fibromyalgia, substance withdrawal syndrome, acute chest syndrome, Barre-Lieou syndrome, cauda equina syndrome, Kluver-Bucy syndrome, Miller Fisher syndrome, persian gulf syndrome, Reye syndrome, thoracic outlet syndrome, Waterhouse-Friderichsen syndrome, Wissler syndrome, acute respiratory distress syndrome, Achenbach syndrome, miliaria, anterior spinal artery syndrome, burning mouth syndrome, dry eye syndrome, empty sella syndrome, euthyroid sick syndrome, lateral medullary syndrome, subclavian steal syndrome, tarsal tunnel syndrome, tethered spinal cord syndrome, branchio-oto-renal syndrome, prune belly syndrome, Achard syndrome, alopecia-epilepsy-pyorrhea-intellectual disability syndrome, Finnish type amyloidosis, Angelman syndrome, aniridia-absent patella syndrome, ankyloblepharon filiforme adnatum-cleft palate syndrome, Townes-Brocks syndrome, obstructive sleep apnea syndrome, Lown-Ganong-Levine syndrome, Behcet disease, brachydactyly-arterial hypertension syndrome, brachydactyly type A2, fibular aplasia-ectrodactyly syndrome, brachydactyly-nystagmus-cerebellar ataxia syndrome, Sillence syndrome, Brachymorphism-onychodysplasia-dysphalangism syndrome, brachytelephalangy-dysmorphism-Kallmann syndrome, dilated cardiomyopathy 1A, cat-eye syndrome, cerebrocostomandibular syndrome, Alagille syndrome, autosomal dominant chondrodysplasia punctata, cleidocranial dysplasia 1, cleidorhizomelic syndrome, cochleosaccular degeneration-cataract syndrome, renal coloboma syndrome, Cri-du-chat syndrome, autosomal dominant deafness - onychodystrophy syndrome, cerebral arteriopathy with subcortical infarcts and leukoencephalopathy, Duane retraction syndrome, 3-M syndrome, dyschondrosteosis-nephritis syndrome, hereditary benign intraepithelial dyskeratosis, encephalopathy, recurrent, of childhood, Camurati-Engelmann disease, Felty syndrome, chromosome 16p12.1 deletion syndrome, 520kb, Frasier syndrome, Gamstorp-Wohlfart syndrome, Tourette syndrome, glaucoma-sleep apnea syndrome, renal cysts and diabetes syndrome, hypotrichosis-lymphedema-telangiectasia syndrome (grouping), GMS syndrome, gray platelet syndrome, hand-foot-genital syndrome, facial hemiatrophy, Bencze syndrome, alpha thalassemia-intellectual disability syndrome type 1, Gilbert syndrome, mullerian duct anomalies-limb anomalies syndrome, hypoparathyroidism-deafness-renal disease syndrome, chromosome 18p deletion syndrome, Pallister-Hall syndrome, ichthyosis-cheek-eyebrow syndrome, Jacobsen syndrome, palmoplantar keratoderma-hereditary motor and sensory neuropathy syndrome, palmoplantar keratoderma-esophageal carcinoma syndrome, Kleine-Levin syndrome, angioosteohypertrophic syndrome, congenital laryngeal web, Lenz-Majewski hyperostotic dwarfism, Noonan syndrome with multiple lentigines, lymphedema-cerebral arteriovenous anomaly syndrome, microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability, yellow nail syndrome, lymphedema-distichiasis syndrome, Nager acrofacial dysostosis, jaw-winking syndrome, Marfan syndrome, Melkersson-Rosenthal syndrome, metaphyseal chondrodysplasia, Jansen type, Schmid metaphyseal chondrodysplasia, metaphyseal dysplasia-maxillary hypoplasia-brachydacty syndrome, microgastria-limb reduction defect syndrome, Mobius syndrome, muscular atrophy-ataxia-retinitis pigmentosa-diabetes mellitus syndrome, nail-patella syndrome, Schilbach-Rott syndrome, syndromic orbital border hypoplasia, Buschke-Ollendorff syndrome, nasopalpebral lipoma-coloboma syndrome, Perry syndrome, Poland syndrome, polydactyly-myopia syndrome, Greig cephalopolysyndactyly syndrome, Prader-Willi syndrome, Guttmacher syndrome, Currarino triad, Hutchinson-Gilford progeria syndrome, progeria-short stature-pigmented nevi syndrome, Liddle syndrome, exfoliation syndrome, ptosis-strabismus-ectopic pupils syndrome, radial hypoplasia-triphalangeal thumbs-hypospadias-maxillary diastema syndrome, radial ray hypoplasia-choanal atresia syndrome, Roussy-Levy syndrome, Silver-Russell syndrome, Ruvalcaba syndrome, oculodental syndrome, Rutherfurd type, aplasia of lacrimal and salivary glands, scalp defects-postaxial polydactyly syndrome, ulnar-mammary syndrome, septooptic dysplasia, Czeizel-Losonci syndrome, polycystic ovary syndrome, stiff-person syndrome, syndactyly-polydactyly-ear lobe syndrome, HELLP syndrome, double uterus-hemivagina-renal agenesis syndrome, VACTERL/vater association, posterior fusion of lumbosacral vertebrae-blepharoptosis syndrome, ptosis-vocal cord paralysis syndrome, Freeman-Sheldon syndrome, Williams syndrome, Denys-Drash syndrome, Wolf-Hirschhorn syndrome, ablepharon macrostomia syndrome, acrocallosal syndrome, PAGOD syndrome, alopecia - intellectual disability syndrome, mitochondrial DNA depletion syndrome 4a, Alstrom syndrome, aniridia-cerebellar ataxia-intellectual disability syndrome, aniridia-renal agenesis-psychomotor retardation syndrome, aplasia cutis congenita-intestinal lymphangiectasia syndrome, fetal akinesia deformation sequence, blepharophimosis-ptosis-esotropia-syndactyly-short stature syndrome, Bloom syndrome, Elsahy-Waters syndrome, campomelia, Cumming type, camptomelic syndrome, long-limb type, congenital cataract-ichthyosis syndrome, colobomatous optic disc-macular atrophy-chorioretinopathy syndrome, hepatic fibrosis-renal cysts-intellectual disability syndrome, Charcot-Marie-Tooth disease-hearing loss-intellectual disability syndrome, CHARGE syndrome, Aagenaes syndrome, infantile choroidocerebral calcification syndrome, Yunis-Varon syndrome, corneal dystrophy-perceptive deafness syndrome, cortical blindness-intellectual disability-polydactyly syndrome, Crigler-Najjar syndrome, cataract-nephropathy-encephalopathy syndrome, Fraser syndrome, cystic fibrosis-gastritis-megaloblastic anemia syndrome, cystinuria, DOORS syndrome, high myopia-sensorineural deafness syndrome, dermochondrocorneal dystrophy, nephrogenic diabetes insipidus-intracranial calcification syndrome, diverticulosis of bowel, hernia, and retinal detachment, Dyggve-Melchior-Clausen disease, cerebellar ataxia, intellectual disability, and dysequilibrium, ectrodactyly-polydactyly syndrome, Bonnemann-Meinecke-Reich syndrome, epidermolysis bullosa simplex 5B, with muscular dystrophy, Wolcott-Rallison syndrome, ermine phenotype, eyebrow duplication-syndactyly syndrome, Fanconi-like syndrome, gingival fibromatosis-facial dysmorphism syndrome, frontofacionasal dysplasia, Fryns syndrome, German syndrome, Bernard-Soulier syndrome, triple-A syndrome, Grubben-de Cock-Borghgraef syndrome, mullerian derivatives-lymphangiectasia-polydactyly syndrome, Hirschsprung disease-hearing loss-polydactyly syndrome, Hirschsprung disease-nail hypoplasia-dysmorphism syndrome, Holzgreve-Wagner-Rehder syndrome, multinucleated neurons-anhydramnios-renal dysplasia-cerebellar hypoplasia-hydranencephaly syndrome, growth delay-hydrocephaly-lung hypoplasia syndrome, Dubin-Johnson syndrome, ornithine translocase deficiency, acrofrontofacionasal dysostosis 2, hypertrichotic osteochondrodysplasia Cantu type, hypergonadotropic hypogonadism-cataract syndrome, primary hypergonadotropic hypogonadism-partial alopecia syndrome, hypoparathyroidism-retardation-dysmorphism syndrome, hypospadias-intellectual disability, Goldblatt type syndrome, Bamforth-Lazarus syndrome, ichthyosis-hepatosplenomegaly-cerebellar degeneration syndrome, ichthyosis-intellectual disability-dwarfism-renal impairment syndrome, Vici syndrome, channelopathy-associated congenital insensitivity to pain, autosomal recessive, Joubert syndrome with oculorenal defect, oculocerebrofacial syndrome, Kaufman type, Landau-Kleffner syndrome, laryngo-onycho-cutaneous syndrome, Laurence-Moon syndrome, Donohue syndrome, Miller-Dieker lissencephaly syndrome, Marinesco-Sjogren syndrome, Frank-Ter Haar syndrome, Mietens syndrome, mesomelic dwarfism-cleft palate-camptodactyly syndrome, metaphyseal chondrodysplasia-retinitis pigmentosa syndrome, metaphyseal dysostosis-intellectual disability-conductive deafness syndrome, microcephalic primordial dwarfism, Toriello type, Say-Barber-Miller syndrome, microcephaly and chorioretinopathy 1, Galloway-Mowat syndrome, microtia with meatal atresia and conductive deafness, mucopolysaccharidosis type 6, mulibrey nanism, lethal multiple pterygium syndrome, lethal congenital contracture syndrome 1, Schwartz-Jampel syndrome, Nathalie syndrome, nephronophthisis 1, nephropathy - deafness - hyperparathyroidism syndrome, nephrosis-deafness-urinary tract-digital malformations syndrome, Netherton syndrome, Norman-Roberts syndrome, cloacal exstrophy, ichthyosis-oral and digital anomalies syndrome, Primrose syndrome, familial osteodysplasia, Anderson type, multicentric osteolysis, nodulosis, and arthropathy, osteopenia-intellectual disability-sparse hair syndrome, osteoporosis-pseudoglioma syndrome, Shwachman-Diamond syndrome, Parana hard-skin syndrome, PEHO syndrome, Imerslund-Grasbeck syndrome, Peters plus syndrome, pili torti-developmental delay-neurological abnormalities syndrome, Rabson-Mendenhall syndrome, postaxial acrofacial dysostosis, Gitelman syndrome, Wiedemann-Rautenstrauch syndrome, Acrootoocular syndrome, holoprosencephaly-postaxial polydactyly syndrome, autosomal recessive multiple pterygium syndrome, Perlman syndrome, retinitis pigmentosa-intellectual disability-deafness-hypogenitalism syndrome, EEC syndrome, SHORT syndrome, Sjogren syndrome, spastic tetraplegia-retinitis pigmentosa-intellectual disability syndrome, corneal-cerebellar syndrome, spastic ataxia-corneal dystrophy syndrome, spondylocostal dysostosis-anal and genitourinary malformations syndrome, familial infantile bilateral striatal necrosis, subaortic stenosis-short stature syndrome, thrombocytopenia-absent radius syndrome, thyrocerebrorenal syndrome, Pendred syndrome, VACTERL with hydrocephalus, Weaver syndrome, Werner syndrome, Wernicke-Korsakoff syndrome, wooly hair-hypotrichosis-everted lower lip-outstanding ears syndrome, de Sanctis-Cacchione syndrome, corpus callosum agenesis-abnormal genitalia syndrome, Alport syndrome-intellectual disability-midface hypoplasia-elliptocytosis syndrome, X-linked lissencephaly with abnormal genitalia, X-linked myotubular myopathy-abnormal genitalia syndrome, Christianson syndrome, Armfield syndrome, Lesch-Nyhan syndrome, Atkin-Flaitz syndrome, alpha-thalassemia-myelodysplastic syndrome, deafness-intellectual disability, Martin-Probst type syndrome, fragile X-associated tremor/ataxia syndrome, fragile X syndrome, syndactyly-telecanthus-anogenital and renal malformations syndrome, X-linked dominant chondrodysplasia, Chassaing-Lacombe type, X-linked central congenital hypothyroidism with late-onset testicular enlargement, Meester-Loeys syndrome, Arts syndrome, X-linked mandibulofacial dysostosis, Abruzzo-Erickson syndrome, Aicardi syndrome, craniofrontonasal syndrome, deafness-hypogonadism syndrome, X-linked corneal dermoid, immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome, hydrocephaly-cerebellar agenesis syndrome, keratosis follicularis-dwarfism-cerebral atrophy syndrome, laryngeal abductor paralysis-intellectual disability syndrome, oculocerebrorenal syndrome, Menkes disease, paraplegia-intellectual disability-hyperkeratosis syndrome, mucopolysaccharidosis type 2, orofaciodigital syndrome I, otopalatodigital syndrome type 1, Pallister-W syndrome, Rett syndrome, SCARF syndrome, Simpson-Golabi-Behmel syndrome, torticollis-keloids-cryptorchidism-renal dysplasia syndrome, trigonocephaly-short stature-developmental delay syndrome, ulnar hypoplasia-split foot syndrome, van den Bosch syndrome, Wildervanck syndrome, Kearns-Sayre syndrome, MELAS syndrome, MERRF syndrome, Pearson syndrome, proximal tubulopathy-diabetes mellitus-cerebellar ataxia syndrome, pancreatic hypoplasia-diabetes-congenital heart disease syndrome, chondrodysplasia-pseudohermaphroditism syndrome, Qazi Markouizos syndrome, familial developmental dysphasia, atrioventricular defect-blepharophimosis-radial and anal defect syndrome, CODAS syndrome, lethal hemolytic anemia-genital anomalies syndrome, HEC syndrome, anophthalmia plus syndrome, infundibulopelvic stenosis-multicystic kidney syndrome, Ayme-Gripp syndrome, dilated cardiomyopathy 1E, diaphragmatic defect-limb deficiency-skull defect syndrome, skeletal dysplasia-epilepsy-short stature syndrome, Potocki-Shaffer syndrome, amelia cleft lip palate hydrocephalus iris coloboma, human HOXA1 syndromes, dyssegmental dysplasia-glaucoma syndrome, lung agenesis-heart defect-thumb anomalies syndrome, tetrasomy 12p, chromosome 18q deletion syndrome, lymphedema-atrial septal defects-facial changes syndrome, infantile convulsions and choreoathetosis, RHYNS syndrome, Pierre Robin sequence with pectus excavatum and rib and scapular anomalies, colobomatous macrophthalmia-microcornea syndrome, Marshall-Smith syndrome, distal monosomy 13q, MPI-congenital disorder of glycosylation, camptodactyly, myopia, and fibrosis of the medial rectus muscle of eye, radioulnar synostosis-microcephaly-scoliosis syndrome, blepharophimosis - intellectual disability syndrome, SBBYS type, complex regional pain syndrome type 1, temtamy preaxial brachydactyly syndrome, Diamond-Blackfan anemia 2, genitopatellar syndrome, Phelan-McDermid syndrome, hypotonia-cystinuria syndrome, DNA ligase IV deficiency, Hurler syndrome, Hurler-Scheie syndrome, Scheie syndrome, Duane-radial ray syndrome, psoriatic arthritis, neonatal ichthyosis-sclerosing cholangitis syndrome, skin fragility-woolly hair-palmoplantar keratoderma syndrome, tubulointerstitial nephritis and uveitis syndrome, caudal duplication, sweet syndrome, ichthyosis prematurity syndrome, Meacham syndrome, BNAR syndrome, PCWH syndrome, foveal hypoplasia - optic nerve decussation defect - anterior segment dysgenesis syndrome, B-cell immunodeficiency, distal limb anomalies, and urogenital malformations, MEDNIK syndrome, Cerebrorenodigital syndrome, fetal valproate syndrome, Goldberg-Shprintzen syndrome, Al-Gazali syndrome, CEDNIK syndrome, osteosclerosis-ichthyosis-premature ovarian failure syndrome, cortical dysplasia-focal epilepsy syndrome, DK1-congenital disorder of glycosylation, Potocki-Lupski syndrome, Pitt-Hopkins syndrome, XFE progeroid syndrome, deafness-infertility syndrome, COG1-congenital disorder of glycosylation, autosomal dominant familial hematuria-retinal arteriolar tortuosity-contractures syndrome, microtia-eye coloboma-imperforation of the nasolacrimal duct syndrome, mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria, ANE syndrome, CLOVES syndrome, Hirschsprung disease-ganglioneuroblastoma syndrome, parkinsonism-dystonia, infantile, alpha 1-antitrypsin deficiency, COG5-congenital disorder of glycosylation, chromosome 13q14 deletion syndrome, deafness-lymphedema-leukemia syndrome, microcephaly-capillary malformation syndrome, EDICT syndrome, peripheral neuropathy-myopathy-hoarseness-hearing loss syndrome, hypomyelinating leukodystrophy 8 with or without oligodontia and-or hypogonadotropic hypogonadism, IMAGe syndrome, short stature-onychodysplasia-facial dysmorphism-hypotrichosis syndrome, microcephalic primordial dwarfism, Alazami type, intellectual disability-strabismus syndrome, estrogen resistance syndrome, Hartsfield-Bixler-Demyer syndrome, severe dermatitis-multiple allergies-metabolic wasting syndrome, alacrima, achalasia, and intellectual disability syndrome, familial episodic pain syndrome with predominantly lower limb involvement, congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome, diffuse cerebral and cerebellar atrophy - intractable seizures - progressive microcephaly syndrome, postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome, tall stature-scoliosis-macrodactyly of the great toes syndrome, intellectual disability, autosomal dominant 29, intellectual disability, autosomal dominant 30, congenital sideroblastic anemia-B-cell immunodeficiency-periodic fever-developmental delay syndrome, retinitis pigmentosa-juvenile cataract-short stature-intellectual disability syndrome, polyendocrine-polyneuropathy syndrome, chronic atrial and intestinal dysrhythmia, motor developmental delay due to 14q32.2 paternally expressed gene defect, peeling skin-leukonuchia-acral punctate keratoses-cheilitis-knuckle pads syndrome, mandibulofacial dysostosis with alopecia, epilepsy with myoclonic atonic seizures, short stature, microcephaly, and endocrine dysfunction, progressive microcephaly-seizures-cortical blindness-developmental delay syndrome, PMP22-RAI1 contiguous gene duplication syndrome, acute infantile liver failure-cerebellar ataxia-peripheral sensory motor neuropathy syndrome, familial progressive retinal dystrophy-iris coloboma-congenital cataract syndrome, macrothrombocytopenia-lymphedema-developmental delay-facial dysmorphism-camptodactyly syndrome, Luscan-Lumish syndrome, even-plus syndrome, MIRAGE syndrome, growth retardation, intellectual developmental disorder, hypotonia, and hepatopathy, intellectual disability-epilepsy-extrapyramidal syndrome, 48,XXYY syndrome, FRAXF syndrome, complex hereditary spastic paraplegia, aniridia-ptosis-intellectual disability-familial obesity syndrome, aniridia - intellectual disability syndrome, ankyloblepharon filiforme-imperforate anus syndrome, pentasomy X, Bardet-Biedl syndrome, anophthalmia-megalocornea-cardiopathy-skeletal anomalies syndrome, Bartter syndrome, arachnodactyly-intellectual disability-dysmorphism syndrome, ataxia-photosensitivity-short stature syndrome, Brugada syndrome, Feingold syndrome, cardiomyopathy-cataract-hip spine disease syndrome, cataract - microcornea syndrome, autism-facial port-wine stain syndrome, cataract-intellectual disability-anal atresia-urinary defects syndrome, cataract-deafness-hypogonadism syndrome, syndromic craniosynostosis, drug rash with eosinophilia and systemic symptoms, multicentric reticulohistiocytosis, hereditary sensory and autonomic neuropathy with deafness and global delay, craniofacial microsomia, ring chromosome 10, Coffin-Siris syndrome, corpus callosum agenesis-double urinary collecting system syndrome, short rib-polydactyly syndrome, oromandibular-limb anomalies syndrome, hemophagocytic syndrome, cataract-glaucoma syndrome, diencephalic syndrome, hypereosinophilic syndrome, distal trisomy 14q, intellectual disability-cataracts-kyphosis syndrome, progressive familial intrahepatic cholestasis, thoraco-abdominal enteric duplication, oculomaxillofacial dysostosis, growth hormone insensitivity syndrome, syndromic dyslipidemia, macrothrombocytopenia and granulocyte inclusions with or without nephritis or sensorineural hearing loss, epiphyseal dysplasia-hearing loss-dysmorphism syndrome, eosinophilic granulomatosis with polyangiitis, axial mesodermal dysplasia spectrum, fetal hydantoin syndrome, vitamin K-antagonist embryofetopathy, fetal alcohol syndrome, methimazole embryofetopathy, Evans syndrome, Cornelia de Lange syndrome, cleft lip-retinopathy syndrome, cleft lip/palate-deafness-sacral lipoma syndrome, Crandall syndrome, syndromic microphthalmia, Cole-Carpenter syndrome, myotonic syndrome, Guillain-Barre syndrome, atypical hemolytic-uremic syndrome, Hennekam syndrome, Hernández-Aguirre Negrete syndrome, nodular neuronal heterotopia, Hirschsprung disease-type D brachydactyly syndrome, holoprosencephaly, hydrocephalus-obesity-hypogonadism syndrome, hydrocephalus-blue sclerae-nephropathy syndrome, xeroderma pigmentosum-Cockayne syndrome complex, Joubert syndrome with ocular defect, hypogonadism-mitral valve prolapse-intellectual disability syndrome, hypogonadotropic hypogonadism-retinitis pigmentosa syndrome, hypotrichosis-intellectual disability, Lopes type, congenital ichthyosis-microcephalus-tetraplegia syndrome, Hughes-Stovin syndrome, heart-hand syndrome, ptosis-upper ocular movement limitation-absence of lacrimal punctum syndrome, syndromic agammaglobulinemia, isotretinoin syndrome, microcornea-posterior megalolenticonus-persistent fetal vasculature-coloboma syndrome, Kabuki syndrome, Kenny-Caffey syndrome, muscular pseudohypertrophy-hypothyroidism syndrome, Kousseff syndrome, limb body wall complex, Lennox-Gastaut syndrome, Lowe-Kohn-Cohen syndrome, macrocephaly-short stature-paraplegia syndrome, primary ciliary dyskinesia, familial intestinal malrotation-facial anomalies syndrome, primary hypertrophic osteoarthropathy, Melhem-Fahl syndrome, lower limb deficiency-hypospadias syndrome, 8p23.1 microdeletion syndrome, sickle cell-beta-thalassemia disease syndrome, sickle cell-hemoglobin c disease syndrome, sickle cell-hemoglobin d disease syndrome, sickle cell-hemoglobin E disease syndrome, hereditary persistence of fetal hemoglobin-sickle cell disease syndrome, microcephaly-brain defect-spasticity-hypernatremia syndrome, microcephaly-microcornea syndrome, Seemanova type, Meier-Gorlin syndrome, Mikati-Najjar-Sahli syndrome, shoulder and girdle defects-familial intellectual disability syndrome, myopathy-growth delay-intellectual disability-hypospadias syndrome, Fuchs heterochromic iridocyclitis, microcephalic osteodysplastic primordial dwarfism types I and III, osteochondrodysplatic nanism-deafness-retinitis pigmentosa syndrome, arthrogryposis-renal dysfunction-cholestasis syndrome, oculo-skeletal-renal syndrome, olivopontocerebellar atrophy-deafness syndrome, Opitz G/BBB syndrome, imperforate oropharynx-costo vetebral anomalies syndrome, Bruck syndrome, osteoporosis-macrocephaly-blindness-joint hyperlaxity syndrome, calciphylaxis, recessive intellectual disability-motor dysfunction-multiple joint contractures syndrome, X-linked ichthyosis syndrome, autoimmune polyendocrinopathy, renal caliceal diverticuli-deafness syndrome, tempi syndrome, syndromic oculocutaneous albinism, short stature-deafness-neutrophil dysfunction-dysmorphism syndrome, congenital varicella syndrome, polyneuropathy-intellectual disability-acromicria-premature menopause syndrome, celiac trunk compression syndrome, hypoplastic pancreas-intestinal atresia-hypoplastic gallbalder syndrome, fetal cytomegalovirus syndrome, Reunion island Larsen syndrome, 46,XX disorder of sex development-anorectal anomalies syndrome, mitochondrial neurogastrointestinal encephalomyopathy, Baraitser-Winter cerebrofrontofacial syndrome, mirror polydactyly-vertebral segmentation-limbs defects syndrome, intellectual disability-hypotonia-skin hyperpigmentation syndrome, congenital hereditary facial paralysis-variable hearing loss syndrome, intellectual disability-microcephaly-phalangeal-facial abnormalities syndrome, Mayer-Rokitansky-Kuster-Hauser syndrome, developmental and speech delay due to SOX5 deficiency, Spigelian hernia-cryptorchidism syndrome, autosomal recessive leukoencephalopathy-ischemic stroke-retinitis pigmentosa syndrome, severe neonatal hypotonia-seizures-encephalopathy syndrome due to 5q31.3 microdeletion, multiple sclerosis-ichthyosis-factor VIII deficiency syndrome, X-linked spasticity-intellectual disability-epilepsy syndrome, spina bifida-hypospadias syndrome, hantavirus pulmonary syndrome, white matter hypoplasia-corpus callosum agenesis-intellectual disability syndrome, deafness-genital anomalies-metacarpal and metatarsal synostosis syndrome, hearing loss-familial salivary gland insensitivity to aldosterone syndrome, multiple synostoses syndrome, central nervous system calcification-deafness-tubular acidosis-anemia syndrome, multiple paragangliomas associated with polycythemia, syngnathia multiple anomalies, Takayasu arteritis, severe early-onset obesity-insulin resistance syndrome due to SH2B1 deficiency, spondylocostal dysostosis-hypospadias-intellectual disability syndrome, hypotrichosis-deafness syndrome, thalidomide embryopathy, trisomy X, trisomy 13, trisomy 18, umbilical cord ulceration-intestinal atresia syndrome, microcephaly-brachydactyly-kyphoscoliosis syndrome, Waardenburg syndrome, Weill-Marchesani syndrome, infantile spasms, Wolfram syndrome, epidermal nevus syndrome, digital anomalies-intellectual disability-short stature syndrome, intellectual disability-obesity-brain malformations-facial dysmorphism syndrome, Erdheim-Chester disease, Stevens-Johnson syndrome, CADDS, finger hyperphalangy - toe anomalies - severe pectus excavatum syndrome, ataxia - telangiectasia variant, growth retardation-mild developmental delay-chronic hepatitis syndrome, primary microcephaly-mild intellectual disability-young-onset diabetes syndrome, ferro-cerebro-cutaneous syndrome, dystonia-aphonia syndrome, microcephaly-complex motor and sensory axonal neuropathy syndrome, X-linked microcephaly-growth retardation-prognathism-cryptorchidism syndrome, severe intellectual disability-hypotonia-strabismus-coarse face-planovalgus syndrome, intrauterine growth restriction-short stature-early adult-onset diabetes syndrome, pseudoxanthoma elasticum-like skin manifestations with retinitis pigmentosa, familial chylomicronemia syndrome, caudal regression-sirenomelia spectrum, visceral heterotaxy, Holmes-Adie syndrome, microcephalic primordial dwarfism due to RTTN deficiency, Joubert syndrome, congenital generalized hypercontractile muscle stiffness syndrome, Kallmann syndrome, Caroli syndrome, X-linked female restricted facial dysmorphism-short stature-choanal atresia-intellectual disability, microlissencephaly-micromelia syndrome, branchiootic syndrome, Plummer-Vinson syndrome, Cushing syndrome, McCune-Albright syndrome, Meckel syndrome, SUNCT syndrome, mucopolysaccharidosis type 3, mucopolysaccharidosis type 4, congenital myasthenic syndrome, Loeys-Dietz syndrome, Alport syndrome, schisis association, Tolosa-Hunt syndrome, iridocorneal endothelial syndrome, Noonan syndrome, short fifth metacarpals-insulin resistance syndrome, progressive supranuclear palsy, benign exophthalmos syndrome, Sandifer syndrome, global developmental delay-osteopenia-ectodermal defect syndrome, tubular renal disease-cardiomyopathy syndrome, angioosteohypotrophic syndrome, 6q terminal deletion syndrome, Axenfeld-Rieger syndrome, peroxisome biogenesis disorder, ectodermal dysplasia syndrome, Seckel syndrome, Sotos syndrome, Stickler syndrome, pelvis syndrome, Susac syndrome, ischio-vertebral syndrome, BRESEK syndrome, Turner syndrome, Usher syndrome, obesity-colitis-hypothyroidism-cardiac hypertrophy-developmental delay syndrome, CREST syndrome, Sheehan syndrome, polymyalgia rheumatica, autoinflammatory syndrome, neuroleptic malignant syndrome, pituitary stalk interruption syndrome, monosomy 13q34, ring chromosome 13, 48,XXXY syndrome, 49,XXXXY syndrome, hereditary continuous muscle fiber activity, Eisenmenger syndrome, Robinow syndrome, Ehlers-Danlos syndrome, hypoplastic right heart syndrome, shone complex, 48,XYYY syndrome, subcortical band heterotopia, complex regional pain syndrome type 2, faciodigitogenital syndrome, neoplastic syndrome, paraneoplastic syndrome, post-infectious syndrome, Achard-Thiers syndrome, acral dysostosis dyserythropoiesis syndrome, agnathia-microstomia-synotia, Aksu von Stockhausen syndrome, Aloi Tomasini Isaia syndrome, temporomandibular joint dysfunction syndrome, Apert-like polydactyly syndrome, arakawa syndrome 2, arena syndrome, Arnold stickler bourne syndrome, baetz-greenwalt syndrome, bagatelle Cassidy syndrome, baker Vinters syndrome, bobble-head doll syndrome, Boerhaave syndrome, Cantu Sanchez-Corona Fragoso syndrome, Cantu Sanchez-Corona Hernandez syndrome, carbon baby syndrome, Carnevale hernandez castillo syndrome, Cartwright Nelson Fryns syndrome, Charles bonnet syndrome, Parinaud syndrome, corticobasal degeneration disorder, hair defect with photosensitivity and intellectual disability syndrome, AIDS dysmorphic syndrome, congenital acardia, acute lymphoblastic leukemia congenital sporadic aniridia, aglossia and situs inversus, agyria pachygyria polymicrogyria, agyria-pachygyria type 1, Ahumada Del Castillo syndrome, alopecia congenita keratosis palmoplantaris, alpha-mannosidosis type 1, aluminosis, Mauriac syndrome, ankle defects short stature, ankyloblepharon filiforme imperforate anus, annular constricting bands, anophthalmia cleft palate micrognathia, anophthalmia esophageal atresia cryptorchidism, anotia facial palsy cardiac defect, aortic dissection lentiginosis, childhood aortic valve stenosis, arthrogryposis IUGR thoracic dystrophy, arthrogryposis multiplex congenita CNS calcification, arthrogryposis spinal muscular atrophy, asternia, atlanto-axial fusion, atrophoderma of Pierini and Pasini, Barnicoat Baraitser syndrome, Basedow’s coma, BD syndrome, Beardwell syndrome, bhaskar jagannathan syndrome, bidirectional tachycardia, bilirubin induced brain injury in the newborn, blepharo naso facial syndrome van Maldergem type, bone dysplasia corpus callosum agenesis, brachydactyly absence of distal phalanges, brachydactyly anonychia, brachydactyly small stature face anomalies, brachydactyly tibial hypoplasia, brittle bone syndrome lethal type, bronchiectasis oligospermia, Brunsting-Perry syndrome, bruyn scheltens syndrome, burn goodship syndrome, camptodactyly joint contractures and facial skeletal dysplasia, camptodactyly vertebral fusion, Cantu Sanchez-Corona Garcia-Cruz syndrome, cardiac hydatid cysts with intracavitary expansion, cardioencephalomyopathy, cardiofacial syndrome short limbs, cardiomelic syndrome stratton Koehler type, cardiomyopathy and deafness due to tRNA lysine gene mutation, cardiomyopathy diabetes deafness, cardiomyopathy hypogonadism collagenoma syndrome, cardiomyopathy hypogonadism metabolic anomalies, cardiomyopathy spherocytosis, carpo tarsal osteolysis recessive, autosomal dominant cataract, cataract skeletal anomalies, cennamo gangemi syndrome, cerebellar agenesis, cerebello-olivary atrophy, cerebral calcification cerebellar hypoplasia, cerebral calcifications opalescent teeth phosphaturia, oculo digital syndrome, chondrodysplasia, choreoacanthocytosis amyotrophic, chorioretinopathy dominant form microcephaly, Christian Demyer Franken syndrome, Christian Johnson angenieta syndrome, chromosome 3 duplication syndrome, chronic demyelinizing neuropathy with IgM monoclonal, ciliary dyskinesia-bronchiectasis, circumscribed cutaneous aplasia of the vertex, circumscribed disseminated keratosis Jadassohn lew type, cleft lip and palate malrotation cardiopathy, cleft lip and/or palate with mucous cysts of lower, cleft lip palate dysmorphism kumar type, cleft lip palate intellectual disability corneal opacity, cleft lip palate oligodontia syndactyly pili torti, cleft lip palate pituitary deficiency, cleft lip palate-tetraphocomelia, cleft lower lip cleft lateral canthi chorioretinal, cleft palate cardiac defect ectrodactyly, cleft palate colobomata radial synostosis deafness, cleft palate heart disease polydactyly absent tibia, cleft tongue, coarse face hypotonia constipation, Cohen Lockood Wyborney syndrome, type 2 collagenopathy, Collins-Sakati syndrome, coloboma porencephaly hydronephrosis, colobomata unilobar lung heart defect, colonic malakoplakia, Colver Steer Godman syndrome, Combarros Calleja Leno syndrome, complement receptor deficiency, congenital absence of the sternocleidomastoid muscle, congenital amputation, congenital aneurysms of the great vessels, congenital articular rigidity, congenital benign spinal muscular atrophy dominant, congenital cardiovascular shunt, congenital contractures, congenital craniosynostosis maternal hyperthyroiditis, congenital cystic eye, congenital heart disease ptosis hypodontia craniostosis, congenital heart disease radio ulnar synostosis intellectual disability, congenital mumps, congenital stenosis of cervical medullary canal, Dennis-Fairhurst-Moore syndrome, congenital unilateral pulmonary hypoplasia, congenital vagal hyperreflexivity, Cormier Rustin Munnich syndrome, corneal crystals myopathy neuropathy, corneal dystrophy ichthyosis microcephaly intellectual disability, corneal dystrophy pigmentary anomaly malabsorption, corpus callosum agenesis of blepharophimosis robin type, corpus callosum dysgenesis X-linked recessive, corpus callosum dysgenesis cleft spasm, corpus callosum dysgenesis hypopituitarism, cortada Koussef Matsumoto syndrome, Cortes Lacassie syndrome, craniofacial and skeletal defects, craniofacial dysostosis arthrogryposis progeroid appearance, craniofrontonasal syndrome Teebi type, craniostenosis with congenital heart disease intellectual disability, crawfurd syndrome, cutis gyratum acanthosis nigricans craniosynostosis, cutis laxa osteoporosis, Davenport-Donlan syndrome, Davis Lafer syndrome, de Hauwere Leroy adriaenssens syndrome, deafness conductive stapedial ear malformation facial palsy, deafness goiter stippled epiphyses, deafness hypospadias metacarpal and metatarsal syndrome, deafness mesenteric diverticula of small bowel neuropathy, deafness peripheral neuropathy arterial disease, deafness progressive cataract autosomal dominant, dermatocardioskeletal syndrome boronne type, dextrocardia with situs inversus, diabetes persistent mullerian ducts, diaphragmatic agenesis radial aplasia omphalocele, diaphragmatic hernia exomphalos corpus callosum agenesis, diaphragmatic hernia upper limb defects, die Smulders droog van dijk syndrome, diomedi bernardi placidi syndrome, diphallus rachischisis imperforate anus, distichiasis heart congenital anomalies, double discordia, double uterus-hemivagina-renal agenesis, Drachtman Weinblatt Sitarz syndrome, Duker-Weiss-Siber syndrome, duodenal atresia tetralogy of fallot, duplication of leg mirror foot, duplication of the thumb unilateral biphalangeal, dupont sellier chochillon syndrome, dwarfism bluish sclerae, dwarfism deafness retinitis pigmentosa, dwarfism lethal type advanced bone age, dwarfism thin bones multiple fractures, dysmorphism cleft palate loose skin, Eagle syndrome, ectrodactyly cardiopathy dysmorphism, Elliott ludman Teebi syndrome, enamel hypoplasia cataract hydrocephaly, encephalocele anencephaly, enchondromatosis dwarfism deafness, Engelhard Yatziv syndrome, enlarged vestibular aqueduct syndrome, epidermal nevus vitamin D resistant rickets, epimetaphyseal dysplasia cataract, epiphyseal dysplasia dysmorphism camptodactyly, esophageal atresia coloboma talipes, extrasystoles short stature hyperpigmentation microcephaly, facial clefting corpus callosum agenesis, facio digito genital syndrome recessive form, facio skeletal genital syndrome rippberger type, familial capillaro-venous leptomeningeal angiomatosis, Dursun syndrome, Faye-Petersen-Ward-Carey syndrome, feigenbaum Bergeron syndrome, Feingold trainer syndrome, fetal brain disruption sequence, fetal enterovirus syndrome, fetal parainfluenza virus type 3 syndrome, fetal phenothiazine syndrome, fibromatosis multiple non ossifying, fibula aplasia complex brachydactyly, fibular hypoplasia scapulo pelvic dysplasia absent, Fitz-Hugh-Curtis syndrome, focal alopecia congenital megalencephaly, focal or multifocal malformations in neuronal migration, foix chavany Marie syndrome, Fontaine farriaux blanckaert syndrome, Fraser Jequier Chen syndrome, Freiberg disease, Friedman Goodman syndrome, frontonasal malformation cloacal exstrophy, frontonasal dysplasia Klippel feil syndrome, frontonasal dysplasia phocomelic upper limbs, Fryns Fabry Remans syndrome, Fryns Smeets Thiry syndrome, Fuchs atrophia gyrata chorioideae et retinae, Fukuda-Miyanomae-Nakata syndrome, Fuqua Berkovitz syndrome, Garret-Tripp syndrome, gas bloat syndrome, Gaucher ichthyosis restrictive dermopathy, gershinibaruch Leibo syndrome, Ghose-Sachdev-Kumar syndrome, gigantism advanced bone age hoarse cry, glossopalatine ankylosis micrognathia ear anomalies, goldstein hutt syndrome, goniodysgenesis intellectual disability short stature, green sandford davison syndrome, grix Blankenship Peterson syndrome, Ho-Kaufman-McAlister syndrome, Jaffer-Beighton syndrome, Judge Misch wright syndrome, Kashani-Strom-Utley syndrome, Kasznica-Carlson-Coppedge syndrome, Katsantoni-Papadakou-Lagoyanni syndrome, Kocher-debre-Semelaigne syndrome, Koone-Rizzo-Elias syndrome, Kozlowski Brown Hardwick syndrome, Kozlowski Ouvrier syndrome, Kozlowski Rafinski Klicharska syndrome, Kozlowski Warren Fisher syndrome, Krauss Herman Holmes syndrome, Krieble Bixler syndrome, Kuster Majewski Hammerstein syndrome, Kuster syndrome, Laugier-Hunziker syndrome, Laurence-Prosser-Rocker syndrome, le Marec-Bracq-Picaud syndrome, levator syndrome, Marinesco-Sjogren-like syndrome, Milner-Khallouf-Gibson syndrome, radio-digito-facial dysplasia, Seckel like syndrome majoor-krakauer type, neonatal aspiration syndrome, muscular fibrosis multifocal obstructed vessels, short stature contractures hypotonia, Alice in Wonderland syndrome, megacystis-microcolon-intestinal hypoperistalsis syndrome, Basilicata-Akhtar syndrome, Liberfarb syndrome, craniofacial dysmorphism, skeletal anomalies, and impaired intellectual development syndrome, cardiac, facial, and digital anomalies with developmental delay, fibrosis, neurodegeneration, and cerebral angiomatosis, Duane anomaly-myopathy-scoliosis syndrome, congenital cataract-severe neonatal hepatopathy-global developmental delay syndrome, infantile hypotonia-oculomotor anomalies-hyperkinetic movements-developmental delay syndrome, acute radiation syndrome, monoclonal mast cell activation syndrome, oculocerebrodental syndrome, syndromic congenital sodium diarrhea, congenital brachyesophagus-intrathoracic stomach-vertebral anomalies syndrome, intellectual disability-cardiac anomalies-short stature-joint laxity syndrome, intrauterine growth restriction-congenital multiple café-au-lait macules-increased sister chromatid exchange syndrome, frontonasal dysplasia-bifid nose-upper limb anomalies syndrome, microcephaly-facial dysmorphism-ocular anomalies-multiple congenital anomalies syndrome, diaphragmatic hernia-short bowel-asplenia syndrome, warts-immunodeficiency-lymphedema-anogenital dysplasia syndrome, Cramp-fasciculation syndrome, choanal atresia-athelia-hypothyroidism-delayed puberty-short stature syndrome, blepharophimosis-intellectual disability syndrome/genitopatellar overlap syndrome, CCNK-related neurodevelopmental disorder-severe intellectual disability-facial dysmorphism syndrome, cerebellar hypoplasia-intellectual disability-congenital microcephaly-dystonia-anemia-growth retardation syndrome, KLHL7-related Bohring-Opitz-like syndrome, KLHL7-related cold-induced sweating-like syndrome, KAT6B-related multiple congenital anomalies syndrome, oculogastrointestinal-neurodevelopmental syndrome, spastic paraparesis-cataracts-speech delay syndrome, Ruzicka-Goerz-Anton syndrome, Sammartino-Decreccio syndrome, Samson-Gardner syndrome, Samson-Viljoen syndrome, Sanderson-Fraser syndrome, Sandhaus-Ben-Ami syndrome, prostatic malacoplakia associated with prostatic abscess, Saul-Wilkes-Stevenson syndrome, macrogyria, pseudobulbar palsy and intellectual disability, Schwartz-Cohen-addad-Lambert syndrome, Schlegelberger-Grote syndrome, Schrander-stumpel-Theunissen-Hulsmans syndrome, Saal-Bulas syndrome, Sackey-Sakati-Aur syndrome, Slti-Salem syndrome, Zerres Rietschel Majewski syndrome, Zazam Sheriff Phillips syndrome, Zadik-Barak-Levin syndrome, weinstein kliman scully syndrome, thickened earlobes with conductive deafness from incus-stapes abnormalities, ichthyosis linearis circumflexa, infantile striato thalamic degeneration, Landy-Donnai syndrome, merlob grunebaum reisner syndrome, Pavone Fiumara Rizzo syndrome, pfeiffer rockelein syndrome, Pfeiffer Tietze Welte syndrome, phosphoribosylpyrophosphate synthetase deficiency, piepkorn karp hickok syndrome, podder-tolmie syndrome, pointer syndrome, richieri-costa guion-almeida cohen syndrome, Rubinstein Taybi like syndrome, ruvalcaba churesigaew myhre syndrome, short limb dwarf lethal colavita kozlowski type, Mallory-Weiss syndrome, superior vena cava syndrome, piriformis syndrome, engraftment syndrome, Adams-Stokes syndrome, Leriche syndrome, multiple organ dysfunction syndrome, posterior leukoencephalopathy syndrome, cardio-renal syndrome, Rahman syndrome, X-linked keloid scarring-reduced joint mobility-increased optic cup-to-disc ratio syndrome, retinitis pigmentosa-hearing loss-premature aging-short stature-facial dysmorphism syndrome, congenital labioscrotal agenesis-cerebellar malformation-corneal dystrophy-facial dysmorphism syndrome, Lopes-Maciel-Rodan syndrome, Stankiewicz-Isidor syndrome, Skraban-Deardorff syndrome, joint laxity, short stature, and myopia, Sweeney-Cox syndrome, Alkuraya-Kucinskas syndrome, Jaberi-Elahi syndrome, neurodevelopmental disorder with regression, abnormal movements, loss of speech, and seizures, hearing impairment and infertile male syndrome, cardiocutaneous syndrome, neonatal diabetes, congenital sensorineural hearing loss and congenital cataracts, cardioectodermal syndrome, cannabinoid hyperemesis syndrome, retrograde cricopharyngeus dysfunction, Zinner syndrome, retinal dystrophy-ataxia-pituitary hormone abnormality-hypogonadism syndrome, IFAP syndrome, DICER1-related tumor predisposition, Roberts-SC phocomelia syndrome, carcinoid syndrome, Bonnevie-Ullrich syndrome, NKX2-1 related choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction, RNU4ATAC spectrum disorder, syndromic congenital heart disease, hand-foot syndrome, central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease, gastrointestinal defects and immunodeficiency syndrome 1, achalasia-alacrima syndrome, black locks with albinism and deafness syndrome, Birt-Hogg-Dube syndrome, trigeminal trophic syndrome, developmental and/or epileptic encephalopathy with spike-wave activation in sleep, syndromic microspherophakia, painful legs and moving toes syndrome, congenital aphakia-iris hypoplasia-microphthalmia-microcornea syndrome, hereditary persistence of fetal hemoglobin-intellectual disability syndrome, developmental delay-immunodeficiency-leukoencephalopathy-hypohomocysteinemia syndrome, primary hypomagnesemia-generalized seizures-intellectual disability-obesity syndrome, post-cardiac arrest syndrome, early-onset obesity-hyperphagia-severe developmental delay syndrome, hereditary alpha tryptasemia syndrome, KINSSHIP syndrome, developmental delay, hypotrophy, and dysmorphic features without moebius syndrome, breast implant illness, cataracts, hearing impairment, nephrotic syndrome, and enterocolitis, craniosynostosis-facial dysmorphism-chiari-1 malformation-developmental and language delay syndrome, MYT1L-related developmental delay-intellectual disability-obesity syndrome, Houge-Janssens syndrome, xerosis and growth failure with immune and pulmonary dysfunction syndrome, Fliedner-Zweier syndrome, Lui-Jee-Baron syndrome, Long-Olsen-Distelmaier syndrome, Tan-Almurshedi syndrome, diabetes, deafness, developmental delay, and short stature syndrome, Alfadhel syndrome, Hoxha-Aliu syndrome, cleft palate-congenital heart defect-intellectual disability syndrome, congenital insensitivity to pain syndrome, Marsili type, Yuksel-Vogel-Bauer syndrome, polydactyly-macrocephaly syndrome, pyoderma gangrenosum-acne-hidradenitis suppurativa-ankylosing spondylitis syndrome, psoriatic arthritis-pyoderma gangrenosum-acne-hidradenitis suppurativa syndrome, megalencephaly-polydactyly syndrome, Leigh syndrome, mitochondrial, auroneurodental syndrome, orofacial clefting-cardiac anomalies-facial dysmorphism syndrome, Grisel syndrome, arterial tortuosity-bone fragility syndrome, dialysis disequilibrium syndrome, brain abnormalities-severe developmental delay-facial dysmorphism-intellectual disability syndrome due to MEF2C mutation, Kariminejad neurodevelopmental syndrome, myelofibrosis, congenital, with anemia, neutropenia, developmental delay, and ocular abnormalities, brain malformation renal syndrome, myopathy with myalgia, increased serum creatine kinase, and with or without episodic rhabdomyolysis 2, Karayol-Borroto-Haghshenas neurodevelopmental syndrome, neurodegeneration, infantile-onset, with optic atrophy and brain abnormalities, Morimoto-Ryu-Malicdan neuromuscular syndrome, neurodevelopmental disorder with dysmorphic facies, absent speech and ambulation, and brain abnormalities, neurodevelopmental disorder with variable familial hypercholanemia, Pan-Chung-Bellen syndrome, telangiectasia, impaired intellectual development, microcephaly, metaphyseal dysplasia, eye abnormalities, and short stature, Muggenthaler-Chowdhury-Chioza syndrome, Tayoun-Maawali syndrome, ragopathy, cardiovascular-kidney-metabolic syndrome, craniofaciocardiohepatic syndrome, FICUS syndrome, Li-Takada-Miyake syndrome, Guillouet-Gordon syndrome, ICHAD syndrome, cataract, alopecia, oral mucosal disorder, and psoriasis-like syndrome, RAC2-related combined immunodeficiency-bronchiectasis-cancer-predisposing syndrome, oculovertebral syndrome, Alsahan-Harris syndrome, Ververi-Brady syndrome, Dursun-Ozgul neurodevelopmental syndrome, immune dysregulation, neurodevelopmental defects, and colitis, Harel-Tora neurodevelopmental syndrome, Valence-Farazi cerebellar ataxia syndrome, dyschromatosis, ichthyosis, deafness, and atopic disease, Ramond-Elliott neurodevelopmental syndrome, STAD syndrome, craniosynostosis-scoliosis syndrome, loin pain hematuria syndrome, IRF6-related condition, linkeropathy, NDUFB11-related disorders, CRYAB-related myofibrillar myopathy-cataract-cardiomyopathy spectrum disorder, TSEN2-related neurodevelopmental disorder with or without thrombotic microangiopathy, antiphospholipid syndrome

Genetics & variants

GWAS landscape

231 GWAS associations across 69 studies. Top hits map to 35 distinct genes (as reported by GWAS).

Top associations by p-value

rsIDp-valueGeneRisk alleleOdds ratio
rs37552652e-37IL18RAP?1.01
rs25235994e-16HLA-C - USP8P1?
rs101566023e-15PHF2A0.03
rs12488257e-15LINC02025 - CADM2A0.03
rs49378727e-15LINC02763 - NCAM1-AS2A0.01
rs108992348e-15EMSY - LINC02757?0.99
rs92734534e-14HLA-DQB1, HLA-DQB1-AS1?
rs58036506e-14RN7SL618P - ZNF646P1C0.03
rs118777581e-13CELF4T0.01
rs110900393e-13EP300A0.01
rs98748473e-13WNT7A?
rs92606033e-13POLR1HASP, POLR1HASP?
rs601193303e-13TEF?1.01
rs99647244e-13CELF4 - MIR4318?1.01
rs47442429e-13FAM120AT0.01
rs30994391e-12TMEM161BT0.01
rs27361553e-12PRRC2AC0.02
rs31299814e-12HCG20?
rs1138254106e-12PABPC4 - HEYL?
rs778548456e-12RNU6-289P - RPL36AP23?0.99
rs2009771e-11H4C13 - H3C12T0.01
rs94677141e-11H3C9P - BTN3A2?
rs30176662e-11GANAB?
rs132131414e-11PTP4A1 - RPL9P18?0.99
rs205515e-11EP300-AS1, EP300?
rs129580485e-11TCF4A0.01
rs30953406e-11HCG20?
rs26472287e-11TET2-AS1?
rs556947148e-11LINC02763 - NCAM1-AS2?
rs9120518e-11PCDH8P1?1.01

Top studies (by case count)

StudyLead authorYearCasesControlsTitle
GCST90432148Jiang Y2023116,382213,325A cross-disorder study to identify causal relationships, shared genetic variants, and genes across 21 digestive disorders.
GCST90454174Jiang M202361,516709,884Genetic and observational associations of lung function with gastrointestinal tract diseases: pleiotropic and mendelian randomization analysis.
GCST90454178Jiang M202361,516709,884Genetic and observational associations of lung function with gastrointestinal tract diseases: pleiotropic and mendelian randomization analysis.
GCST90454182Jiang M202361,516709,884Genetic and observational associations of lung function with gastrointestinal tract diseases: pleiotropic and mendelian randomization analysis.
GCST90271325Gong W202353,400762,644Role of the Gut-Brain Axis in the Shared Genetic Etiology Between Gastrointestinal Tract Diseases and Psychiatric Disorders: A Genome-Wide Pleiotropic Analysis.
GCST90271326Gong W202353,400584,648Role of the Gut-Brain Axis in the Shared Genetic Etiology Between Gastrointestinal Tract Diseases and Psychiatric Disorders: A Genome-Wide Pleiotropic Analysis.
GCST90271327Gong W202353,400497,844Role of the Gut-Brain Axis in the Shared Genetic Etiology Between Gastrointestinal Tract Diseases and Psychiatric Disorders: A Genome-Wide Pleiotropic Analysis.
GCST90271328Gong W202353,400467,395Role of the Gut-Brain Axis in the Shared Genetic Etiology Between Gastrointestinal Tract Diseases and Psychiatric Disorders: A Genome-Wide Pleiotropic Analysis.
GCST90271329Gong W202353,400804,750Role of the Gut-Brain Axis in the Shared Genetic Etiology Between Gastrointestinal Tract Diseases and Psychiatric Disorders: A Genome-Wide Pleiotropic Analysis.
GCST90271330Gong W202353,400488,726Role of the Gut-Brain Axis in the Shared Genetic Etiology Between Gastrointestinal Tract Diseases and Psychiatric Disorders: A Genome-Wide Pleiotropic Analysis.

Variant details and genetic-evidence tiers

Tier distribution (top 50 variants)

TierVariants
Tier 1: coding1
Tier 2: splice/UTR1
Tier 3: regulatory0
Tier 4: intronic/intergenic48

MAF distribution

BucketVariants
common (>=0.05)49
low_freq (0.01-0.05)1
rare (<0.01)0
unknown0

Functional consequences

ConsequenceCount
intron_variant39
intergenic_variant7
non_coding_transcript_exon_variant2
3_prime_UTR_variant1
missense_variant1

Top variants

rsIDChrPosAllelesMAFConsequenceGenep-valueTier
rs37552652102436356C>A0.05intron_variantIL18RAP2e-37Tier 4: intronic/intergenic
rs2523599631273315C>A,G,T0.05intron_variantHLA-C - USP8P14e-16Tier 4: intronic/intergenic
rs10156602993583046A>G0.367intron_variantPHF23e-15Tier 4: intronic/intergenic
rs1248825384944260A>C,G,T0.325intron_variantLINC02025 - CADM27e-15Tier 4: intronic/intergenic
rs493787211112956992A>G,T0.05intergenic_variantLINC02763 - NCAM1-AS27e-15Tier 4: intronic/intergenic
rs108992341176577893G>A,T0.05intergenic_variantEMSY - LINC027578e-15Tier 4: intronic/intergenic
rs9273453632660035C>G0.053_prime_UTR_variantHLA-DQB1, HLA-DQB1-AS14e-14Tier 2: splice/UTR
rs58036501353365464CTT>C,CT,CTTT,CTTTT,CTTTTT,CTTTTTTTT,CTTTTTTTTTTTTT0.479intron_variantRN7SL618P - ZNF646P16e-14Tier 4: intronic/intergenic
rs118777581837558147T>A,G0.05intron_variantCELF41e-13Tier 4: intronic/intergenic
rs110900392241100796G>A0.05intron_variantEP3003e-13Tier 4: intronic/intergenic
rs9874847313877812C>T0.05intron_variantWNT7A3e-13Tier 4: intronic/intergenic
rs9260603629954977C>T0.05intron_variantPOLR1HASP, POLR1HASP3e-13Tier 4: intronic/intergenic
rs601193302241395041T>C,G0.05intron_variantTEF3e-13Tier 4: intronic/intergenic
rs99647241837579161C>A,T0.05intron_variantCELF4 - MIR43184e-13Tier 4: intronic/intergenic
rs4744242993474429G>A,C,T0.05intron_variantFAM120A9e-13Tier 4: intronic/intergenic
rs3099439588249501C>T0.05intron_variantTMEM161B1e-12Tier 4: intronic/intergenic
rs2736155631637422G>A,C,T0.476intron_variantPRRC2A3e-12Tier 4: intronic/intergenic
rs3129981630791080C>T0.05intron_variantHCG204e-12Tier 4: intronic/intergenic
rs113825410139591871A>G0.05intergenic_variantPABPC4 - HEYL6e-12Tier 4: intronic/intergenic
rs778548454111450477T>C0.05intergenic_variantRNU6-289P - RPL36AP236e-12Tier 4: intronic/intergenic
rs200977627886523T>C0.05intron_variantH4C13 - H3C121e-11Tier 4: intronic/intergenic
rs9467714626340557G>A,C0.05intron_variantH3C9P - BTN3A21e-11Tier 4: intronic/intergenic
rs30176661162636945A>C,G,T0.05intron_variantGANAB2e-11Tier 4: intronic/intergenic
rs13213141663585217G>A0.05intergenic_variantPTP4A1 - RPL9P184e-11Tier 4: intronic/intergenic
rs205512241152004A>G0.05missense_variantEP300-AS1, EP3005e-11Tier 1: coding
rs129580481855434367A>G,T0.05intron_variantTCF45e-11Tier 4: intronic/intergenic
rs3095340630759162A>C,G,T0.05intron_variantHCG206e-11Tier 4: intronic/intergenic
rs26472284105294213T>A,G0.05intron_variantTET2-AS17e-11Tier 4: intronic/intergenic
rs5569471411112958606T>A0.05intergenic_variantLINC02763 - NCAM1-AS28e-11Tier 4: intronic/intergenic
rs9120511353201181C>A,G0.05non_coding_transcript_exon_variantPCDH8P18e-11Tier 4: intronic/intergenic

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 0 · Orphanet: 12 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0

Orphanet rare-disease linkage (cohort genes)

GeneOrphanet IDRare disease
PCDH15Orphanet:231169Usher syndrome type 1
PCDH15Orphanet:90636Rare autosomal recessive non-syndromic sensorineural deafness type DFNB
HAMPOrphanet:648581Digenic hemochromatosis
HAMPOrphanet:79230HJV or HAMP-related hemochromatosis
FHITOrphanet:422526Hereditary clear cell renal cell carcinoma
HLA-COrphanet:585909B-lymphoblastic leukemia/lymphoma with t(9;22)(q34.1;q11.2)
LIG4Orphanet:235Dubowitz syndrome
LIG4Orphanet:39041Omenn syndrome
LIG4Orphanet:99812LIG4 syndrome
PIK3CDOrphanet:221139Combined immunodeficiency with facio-oculo-skeletal anomalies
PIK3CDOrphanet:33110Autosomal non-syndromic agammaglobulinemia
PIK3CDOrphanet:693661Activated PI3K-delta syndrome 1

Cohort genes → proteins

25 cohort genes, 23 distinct canonical proteins.

Evidence partition

SubsetGenes
gwas_only25

Cohort genes (full)

SymbolHGNCEnsemblUniProtNameEvidence
SPRY1HGNC:11269ENSG00000164056O43609Protein sprouty homolog 1gwas
PCDH15HGNC:14674ENSG00000150275Q96QU1Protocadherin-15gwas
HAMPHGNC:15598ENSG00000105697P81172Hepcidingwas
EPSTI1HGNC:16465ENSG00000133106Q96J88Epithelial-stromal interaction protein 1gwas
HES6HGNC:18254ENSG00000144485Q96HZ4Transcription cofactor HES-6gwas
GRID2IPHGNC:18464ENSG00000215045A4D2P6Delphilingwas
ABLIM2HGNC:19195ENSG00000163995Q6H8Q1Actin-binding LIM protein 2gwas
MTSS1HGNC:20443ENSG00000170873O43312Protein MTSS 1gwas
HECW1HGNC:22195ENSG00000002746Q76N89E3 ubiquitin-protein ligase HECW1gwas
CPNE8HGNC:23498ENSG00000139117Q86YQ8Copine-8gwas
DPH5HGNC:24270ENSG00000117543Q9H2P9Diphthine methyl ester synthasegwas
FAM98AHGNC:24520ENSG00000119812Q8NCA5Protein FAM98Agwas
WSCD1HGNC:29060ENSG00000179314Q658N2Sialate:O-sulfotransferase 1gwas
S1PR1HGNC:3165ENSG00000170989P21453Sphingosine 1-phosphate receptor 1gwas
NALF1HGNC:33877ENSG00000204442B1AL88NALCN channel auxiliary factor 1gwas
FGF2HGNC:3676ENSG00000138685P09038Fibroblast growth factor 2gwas
FHITHGNC:3701ENSG00000189283P49789Bis(5’-adenosyl)-triphosphatasegwas
MIR5196HGNC:43542ENSG00000284034microRNA 5196gwas
HPN-AS1HGNC:47041ENSG00000227392HPN antisense RNA 1gwas
HLA-CHGNC:4933ENSG00000204525P10321HLA class I histocompatibility antigen, C alpha chaingwas
KDELR2HGNC:6305ENSG00000136240P33947ER lumen protein-retaining receptor 2gwas
LIG4HGNC:6601ENSG00000174405P49917DNA ligase 4gwas
NCAM1HGNC:7656ENSG00000149294P13591Neural cell adhesion molecule 1gwas
NUDT6HGNC:8053ENSG00000170917P53370Nudix hydrolase 6gwas
PIK3CDHGNC:8977ENSG00000171608O00329Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoformgwas

Cohort function summary

Lead sentence per gene, UniProt-curated.

SymbolProtein nameFunction (lead sentence)
SPRY1Protein sprouty homolog 1Inhibits fibroblast growth factor (FGF)-induced retinal lens fiber differentiation, probably by inhibiting FGF-mediated phosphorylation of ERK1/2.
PCDH15Protocadherin-15Calcium-dependent cell-adhesion protein.
HAMPHepcidinLiver-produced hormone that constitutes the main circulating regulator of iron absorption and distribution across tissues.
EPSTI1Epithelial-stromal interaction protein 1Plays a role in M1 macrophage polarization and is required for the proper regulation of gene expression during M1 versus M2 macrophage differentiation.
HES6Transcription cofactor HES-6Does not bind DNA itself but suppresses both HES1-mediated N box-dependent transcriptional repression and binding of HES1 to E box sequences.
GRID2IPDelphilinPostsynaptic scaffolding protein at the parallel fiber-Purkinje cell synapse, where it may serve to link GRID2 with actin cytoskeleton and various signaling molecules.
ABLIM2Actin-binding LIM protein 2May act as scaffold protein.
MTSS1Protein MTSS 1May be related to cancer progression or tumor metastasis in a variety of organ sites, most likely through an interaction with the actin cytoskeleton.
HECW1E3 ubiquitin-protein ligase HECW1E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent degradation of DVL1.
CPNE8Copine-8Probable calcium-dependent phospholipid-binding protein that may play a role in calcium-mediated intracellular processes.
DPH5Diphthine methyl ester synthaseS-adenosyl-L-methionine-dependent methyltransferase that catalyzes four methylations of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine methyl ester.
FAM98AProtein FAM98APositively stimulates PRMT1-induced protein arginine methylation.
WSCD1Sialate:O-sulfotransferase 1Sialate:O-sulfotransferase which catalyzes 8-O-sulfation at the Sia-glycan level using 3’-phosphoadenosine 5’-phosphosulfate (PAPS) as a donor, forming 8-O-sulfated Sia (Sia8S)-glycans.
S1PR1Sphingosine 1-phosphate receptor 1G-protein coupled receptor for the bioactive lysosphingolipid sphingosine 1-phosphate (S1P) that seems to be coupled to the G(i) subclass of heteromeric G proteins.
NALF1NALCN channel auxiliary factor 1Auxillary component of the NALCN sodium channel complex, a channel that regulates the resting membrane potential and controls neuronal excitability.
FGF2Fibroblast growth factor 2Acts as a ligand for FGFR1, FGFR2, FGFR3 and FGFR4.
FHITBis(5’-adenosyl)-triphosphatasePossesses dinucleoside triphosphate hydrolase activity.
HLA-CHLA class I histocompatibility antigen, C alpha chainAntigen-presenting major histocompatibility complex class I (MHCI) molecule with an important role in reproduction and antiviral immunity.
KDELR2ER lumen protein-retaining receptor 2Membrane receptor that binds the K-D-E-L sequence motif in the C-terminal part of endoplasmic reticulum resident proteins and maintains their localization in that compartment by participating to their vesicle-mediated recycling back from t…
LIG4DNA ligase 4DNA ligase involved in DNA non-homologous end joining (NHEJ); required for double-strand break (DSB) repair and V(D)J recombination.
NCAM1Neural cell adhesion molecule 1This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.
NUDT6Nudix hydrolase 6Mediates the hydrolysis of some nucleoside diphosphate derivatives, such as NADH and FAD (in vitro).
PIK3CDPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoformPhosphoinositide-3-kinase (PI3K) phosphorylates phosphatidylinositol (PI) and its phosphorylated derivatives at position 3 of the inositol ring to produce 3-phosphoinositides.

Protein-family classification

Druggable: 7 · Difficult: 5 · Unknown: 13 · Druggable fraction: 0.28

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

FamilyGenesFoldFDR
Antibody/Immunoglobulin22.3×0.737
Scaffold/PPI32.1×0.737
Enzyme (other)31.4×0.810
Kinase11.1×0.824
GPCR11.0×0.824
Other/Unknown130.9×0.824
Transcription factor20.7×0.824

Per-gene assignment

SymbolFamilyDruggable?ECInterPro (top 3)
SPRY1Other/UnknownnoSprouty, Sprouty_domain
PCDH15Other/UnknownnoCadherin-like_dom, Cadherin-like_sf, Cadherin_CS
HAMPOther/UnknownnoHepcidin
EPSTI1Other/UnknownnoEPSTI1
HES6Transcription factornoOrange_dom, bHLH_dom, HLH_DNA-bd_sf
GRID2IPScaffold/PPInoPDZ, FH2_Formin, PDZ_sf
ABLIM2Transcription factornoZnf_LIM, Villin_headpiece, AbLIM_anchor
MTSS1Scaffold/PPInoWH2_dom, I-BAR_dom, AH/BAR_dom_sf
HECW1Scaffold/PPIno2.3.2.26C2_dom, HECT_dom, WW_dom
CPNE8Other/UnknownnoC2_dom, VWF_A, Copine_C
DPH5Enzyme (other)yes2.1.1.3144pyrrol_Mease, Dphthn_synthase, 4pyrrole_Mease_sub2
FAM98AOther/UnknownnoFAM98
WSCD1Other/UnknownnoSulfotransferase_dom, WSC_carb-bd, P-loop_NTPase
S1PR1GPCRyesGPCR_Rhodpsn, EDG1, S1P_rcpt
NALF1Other/UnknownnoNALCN_aux_factor_1/2
FGF2Other/UnknownnoFibroblast_GF_fam, IL1/FGF
FHITEnzyme (other)yes3.6.1.29HIT-like, Histidine_triad_CS, HIT-like_sf
MIR5196Other/Unknownno
HPN-AS1Other/Unknownno
HLA-CAntibody/ImmunoglobulinyesMHC_I_a_a1/a2, Ig_C1-set, Ig-like_dom
KDELR2Other/UnknownnoER_ret_rcpt
LIG4Enzyme (other)yes6.5.1.1DNA_ligase_ATP-dep, BRCT_dom, DNA_ligase_ATP-dep_N
NCAM1Antibody/ImmunoglobulinyesIg_sub2, Ig_sub, FN3_dom
NUDT6Other/UnknownnoNUDIX_hydrolase_dom, Nudix_hydrolase6-like, NUDIX_hydrolase-like_dom_sf
PIK3CDKinaseyes2.7.1.137PI3K_Ras-bd_dom, PI3/4_kinase_cat_dom, PI3K_accessory_dom

Expression context

Cohort genes with no expression data: 0.

19 cohort genes are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

BucketGenes
narrow (1-5 tissues)0
moderate (6-20)0
broad (>20)25
unknown0

Top tissues across cohort

TissueCohort genes
ventricular zone4
right lobe of liver3
secondary oocyte3
ganglionic eminence3
endothelial cell3
left adrenal gland cortex2
oocyte2
cortical plate2
Brodmann (1909) area 232
calcaneal tendon2
sperm2
body of pancreas2
tibia2
right lung2
blood2
omental fat pad1
pericardium1
peritoneum1
adrenal tissue1
male germ line stem cell (sensu Vertebrata) in testis1

Per-gene tissue summary (top 30)

SymbolBgee breadthFANTOM5 breadthSCXATop tissues
SPRY1272ubiquitousmarkerpericardium, omental fat pad, peritoneum
PCDH15130tissue_specificmarkerleft adrenal gland cortex, male germ line stem cell (sensu Vertebrata) in testis, adrenal tissue
HAMP223broadmarkerright lobe of liver, right atrium auricular region, cardiac atrium
EPSTI1219ubiquitousmarkeroocyte, secondary oocyte, ileal mucosa
HES6186ubiquitousmarkerganglionic eminence, ventricular zone, secondary oocyte
GRID2IP112tissue_specificyesright hemisphere of cerebellum, cerebellum, cortical plate
ABLIM2223broadmarkertibialis anterior, gastrocnemius, hindlimb stylopod muscle
MTSS1294ubiquitousmarkerpigmented layer of retina, renal glomerulus, metanephric glomerulus
HECW1172broadmarkerBrodmann (1909) area 23, middle temporal gyrus, endothelial cell
CPNE8233ubiquitousmarkerepithelial cell of pancreas, calcaneal tendon, sperm
DPH5286ubiquitousmarkerbody of pancreas, primordial germ cell in gonad, left ovary
FAM98A297ubiquitousmarkertibia, male germ cell, sperm
WSCD1207broadyesventricular zone, ganglionic eminence, inferior vagus X ganglion
S1PR1234ubiquitousmarkerright lung, upper lobe of left lung, ventricular zone
NALF1187broadmarkerendothelial cell, Brodmann (1909) area 23, buccal mucosa cell
FGF2232ubiquitousmarkercartilage tissue, choroid plexus epithelium, calcaneal tendon
FHIT188ubiquitousmarkerright adrenal gland, right adrenal gland cortex, left adrenal gland cortex
MIR519675yessural nerve, islet of Langerhans, monocyte
HPN-AS1117tissue_specificyesright lobe of liver, liver, body of pancreas
HLA-C134ubiquitousmarkerblood, right lung, spleen
KDELR2301ubiquitousmarkerstromal cell of endometrium, tibia, mucosa of sigmoid colon
LIG4275ubiquitousyesendothelial cell, oocyte, secondary oocyte
NCAM1266ubiquitousmarkercortical plate, ventricular zone, ganglionic eminence
NUDT6268ubiquitousyestendon of biceps brachii, medial globus pallidus, right lobe of liver
PIK3CD253ubiquitousmarkergranulocyte, blood, lymph node

Protein interactions among cohort

Intra-cohort edges: 2.

Hub genes (top 10 by interactor count)

SymbolInteractor count
FGF25,701
NCAM15,075
LIG42,352
PIK3CD2,059
S1PR12,046
PCDH151,732
FHIT1,690
MTSS11,628
DPH51,587
HAMP1,580

Intra-cohort edges

ABSources
FGF2NUDT6string_interaction
GRID2IPKDELR2string_interaction

Structural data

PDB: 14 · AlphaFold-only: 9 · No structure: 2

Cohort genes with PDB structures (top 30)

SymbolUniProtPDB entries
LIG4P4991731
FGF2P0903825
S1PR1P2145321
PIK3CDO0032918
HLA-CP1032113
FHITP497899
PCDH15Q96QU18
NCAM1P135917
HAMPP811726
NALF1B1AL885
ABLIM2Q6H8Q13
NUDT6P533702
MTSS1O433121
HECW1Q76N891

AlphaFold-only cohort genes (top 30 by pLDDT)

SymbolUniProtpLDDT
KDELR2P3394793.12
DPH5Q9H2P992.20
CPNE8Q86YQ888.19
WSCD1Q658N277.87
EPSTI1Q96J8875.49
HES6Q96HZ471.57
FAM98AQ8NCA568.95
GRID2IPA4D2P667.21
SPRY1O4360961.99

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 111. Enrichment computed across 25 evidence-associated genes (14 with Reactome annotation).

Pathways by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 14 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

PathwayCohort genesFoldFDRSample cohort genes
TGFBR3 regulates FGF2 signaling1271.9×0.067FGF2
2-LTR circle formation1116.5×0.067LIG4
Synthesis of diphthamide-EEF21102.0×0.067DPH5
Formation of intermediate mesoderm1102.0×0.067FGF2
FGFR1b ligand binding and activation190.6×0.067FGF2
FGFR2b ligand binding and activation181.6×0.067FGF2
Endosomal/Vacuolar pathway174.2×0.067HLA-C
Co-stimulation by ICOS174.2×0.067PIK3CD
Signaling by activated point mutants of FGFR1168.0×0.067FGF2
Signaling by activated point mutants of FGFR3168.0×0.067FGF2
Erythropoietin activates Phosphoinositide-3-kinase (PI3K)168.0×0.067PIK3CD
FGFR3c ligand binding and activation162.8×0.067FGF2
FGFR2c ligand binding and activation162.8×0.067FGF2
POU5F1 (OCT4), SOX2, NANOG activate genes related to proliferation162.8×0.067FGF2
Phospholipase C-mediated cascade; FGFR3162.8×0.067FGF2
FGFRL1 modulation of FGFR1 signaling162.8×0.067FGF2
FGFR4 ligand binding and activation158.3×0.067FGF2
FGFR1c ligand binding and activation154.4×0.067FGF2
Lysosphingolipid and LPA receptors154.4×0.067S1PR1
Phospholipase C-mediated cascade; FGFR4154.4×0.067FGF2
DCC mediated attractive signaling151.0×0.067ABLIM2
Activated point mutants of FGFR2148.0×0.067FGF2
Phospholipase C-mediated cascade: FGFR1148.0×0.067FGF2
Phospholipase C-mediated cascade; FGFR2145.3×0.067FGF2
PI-3K cascade:FGFR3145.3×0.067FGF2
Formation of the nephric duct145.3×0.067FGF2
SHC-mediated cascade:FGFR3142.9×0.067FGF2
Signaling by FGFR2 IIIa TM142.9×0.067FGF2
Developmental Lineage of Multipotent Pancreatic Progenitor Cells142.9×0.067FGF2
PI-3K cascade:FGFR4140.8×0.067FGF2

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 21 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO termCohort genesFoldFDRSample cohort genes
positive regulation of epithelial tube formation2267.5×0.006FGF2, PIK3CD
organ induction2114.6×0.015SPRY1, FGF2
negative regulation of fibroblast growth factor receptor signaling pathway2100.3×0.015SPRY1, FGF2
cardiac muscle tissue growth involved in heart morphogenesis1802.5×0.022S1PR1
growth factor dependent regulation of skeletal muscle satellite cell proliferation1802.5×0.022FGF2
diadenosine triphosphate catabolic process1802.5×0.022FHIT
negative regulation of iron ion transmembrane transport1802.5×0.022HAMP
positive regulation of cell fate specification1802.5×0.022FGF2
establishment of integrated proviral latency1802.5×0.022LIG4
positive regulation of neuroepithelial cell differentiation1802.5×0.022FGF2
regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis1802.5×0.022FGF2
negative regulation of iron export across plasma membrane1802.5×0.022HAMP
negative regulation of intestinal absorption1802.5×0.022HAMP
lamellipodium assembly242.2×0.022ABLIM2, S1PR1
natural killer cell chemotaxis1401.2×0.023PIK3CD
positive regulation of inner ear auditory receptor cell differentiation1401.2×0.023FGF2
regulation of retinal cell programmed cell death1401.2×0.023FGF2
epithelial to mesenchymal transition involved in cardiac fibroblast development1401.2×0.023SPRY1
nephron tubule epithelial cell differentiation1401.2×0.023MTSS1
regulation of cell migration involved in sprouting angiogenesis1401.2×0.023FGF2
regulation of postsynaptic cytosolic calcium ion concentration1401.2×0.023GRID2IP
positive regulation of lens fiber cell differentiation1401.2×0.023FGF2
response to wortmannin1401.2×0.023FGF2
positive regulation of chromosome organization1401.2×0.023LIG4
ERK1 and ERK2 cascade230.3×0.023SPRY1, FGF2
stem cell proliferation229.7×0.023FGF2, LIG4
cell adhesion47.1×0.023PCDH15, MTSS1, S1PR1, NCAM1
purine nucleotide metabolic process1267.5×0.025FHIT
corticotropin hormone secreting cell differentiation1267.5×0.025FGF2
angiogenesis involved in coronary vascular morphogenesis1267.5×0.025FGF2

Therapeutics

Drugs indicated for this disease

4 approved, 22 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.

DrugDevelopment status
Clindamycin PhosphateApproved (phase 4)
EluxadolineApproved (phase 4)
LinaclotideApproved (phase 4)
LubiprostoneApproved (phase 4)
AlosetronPhase 3 (in late-stage trials)
Anise OilPhase 3 (in late-stage trials)
AsimadolinePhase 3 (in late-stage trials)
Bifidobacterium Spp.Phase 3 (in late-stage trials)
DexloxiglumidePhase 3 (in late-stage trials)
EbastinePhase 3 (in late-stage trials)
EthosuximidePhase 3 (in late-stage trials)
GlucosaminePhase 3 (in late-stage trials)
IbodutantPhase 3 (in late-stage trials)
Lactobacillus AcidophilusPhase 3 (in late-stage trials)
MaltodextrinPhase 3 (in late-stage trials)
MebeverinePhase 3 (in late-stage trials)
MelatoninPhase 3 (in late-stage trials)
MesalaminePhase 3 (in late-stage trials)
MosapridePhase 3 (in late-stage trials)
OndansetronPhase 3 (in late-stage trials)
PectinPhase 3 (in late-stage trials)
PlecanatidePhase 3 (in late-stage trials)
RenzapridePhase 3 (in late-stage trials)
RifaximinPhase 3 (in late-stage trials)
StarchPhase 3 (in late-stage trials)
TenapanorPhase 3 (in late-stage trials)

Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Charcoal, Activated, Chenodiol, Citalopram, Crofelemer, Dextromethorphan, Doxepin, Dronabinol, Fentanyl, Glutamine, Itopride, Lidocaine, Milnacipran, Naloxone, Nortriptyline, Pexacerfont, Pregabalin, Prucalopride, Ranolazine, Rifamycin, Rimegepant, St. John’S Wort, Trimebutine, Vibegron.

Drug target analysis

Approved (phase 4): 2 · Phase ≥3: 3 · Phased (≥1): 4 · Undrugged: 21

Druggability breadth: 10 of 25 evidence-associated genes (40%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Genes with an approved drug

The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.

SymbolExample approved molecule
S1PR1PONESIMOD
PIK3CDIDELALISIB

Top cohort targets by molecule count

SymbolMoleculesMax phase
PIK3CD664
S1PR1134
FGF212
FHIT13
SPRY100
PCDH1500
HAMP00
EPSTI100
HES600
GRID2IP00

Drugs targeting cohort genes (top 30)

MoleculeMax phaseTargets in cohort
PONESIMOD4S1PR1
SIPONIMOD4S1PR1
FINGOLIMOD4S1PR1
ETRASIMOD4S1PR1
OZANIMOD4S1PR1
FINGOLIMOD HYDROCHLORIDE4S1PR1
IDELALISIB4PIK3CD
ALPELISIB4PIK3CD
DUVELISIB4PIK3CD
COPANLISIB4PIK3CD
UMBRALISIB4PIK3CD
CAFFEINE4PIK3CD
THEOPHYLLINE4PIK3CD
COPANLISIB HYDROCHLORIDE4PIK3CD
LENIOLISIB4PIK3CD
INAVOLISIB4PIK3CD
SUNITINIB4PIK3CD
DASATINIB4PIK3CD
CENERIMOD3S1PR1
SURAMIN3FHIT
DACTOLISIB3PIK3CD
BUPARLISIB3PIK3CD
TASELISIB3PIK3CD
PARSACLISIB3PIK3CD
POVORCITINIB3PIK3CD
GEDATOLISIB3PIK3CD
LESTAURTINIB3PIK3CD
AMISELIMOD2S1PR1
NIGULDIPINE2S1PR1
ICANBELIMOD2S1PR1

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 5.

Cohort genes with ChEMBL bioactivity (full, sorted by assay count)

SymbolAssaysType breakdown
PIK3CD1,111Binding:1094, ADMET:8, Functional:8, Toxicity:1
S1PR1385Functional:194, Binding:191
FGF235Binding:35
FHIT21Binding:19, ADMET:2
PCDH159Binding:9
HAMP9Binding:9
LIG42Binding:2
NCAM12Binding:2
HLA-C1Binding:1
KDELR21Binding:1

Cohort enzymes (BRENDA EC)

SymbolEC numbersNames
HECW12.3.2.26HECT-type E3 ubiquitin transferase
DPH52.1.1.314diphthine methyl ester synthase
FHIT3.6.1.29bis(5’-adenosyl)-triphosphatase
LIG46.5.1.1DNA ligase (ATP)
PIK3CD2.7.1.137, 2.7.1.153, 2.7.11.1phosphatidylinositol 3-kinase, phosphatidylinositol-4,5-bisphosphate 3-kinase, non-specific serine/threonine protein kinase

Cohort genes with high screening signal

≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.

SymbolChEMBL assays
S1PR1385
PIK3CD1,111

Pharmacogenomics

Cohort genes with a PharmGKB record: 23; with CPIC/DPWG dosing guidelines: 0.

No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).

Chemical tractability of cohort targets

30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

CompoundMax phaseCohort target (bioactivity)
PONESIMOD4S1PR1
SIPONIMOD4S1PR1
FINGOLIMOD4S1PR1
ETRASIMOD4S1PR1
OZANIMOD4S1PR1
FINGOLIMOD HYDROCHLORIDE4S1PR1
IDELALISIB4PIK3CD
ALPELISIB4PIK3CD
DUVELISIB4PIK3CD
COPANLISIB4PIK3CD
UMBRALISIB4PIK3CD
CAFFEINE4PIK3CD
THEOPHYLLINE4PIK3CD
COPANLISIB HYDROCHLORIDE4PIK3CD
LENIOLISIB4PIK3CD
INAVOLISIB4PIK3CD
SUNITINIB4PIK3CD
DASATINIB4PIK3CD
CENERIMOD3S1PR1
SURAMIN3FHIT
DACTOLISIB3PIK3CD
BUPARLISIB3PIK3CD
TASELISIB3PIK3CD
PARSACLISIB3PIK3CD
POVORCITINIB3PIK3CD
GEDATOLISIB3PIK3CD
LESTAURTINIB3PIK3CD
AMISELIMOD2S1PR1
NIGULDIPINE2S1PR1
ICANBELIMOD2S1PR1

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

TierDefinitionGenesSymbols
AApproved (phase 4 drug)2S1PR1, PIK3CD
BPhased (≥1) drug, not yet approved2FGF2, FHIT
CDruggable family + PDB, no drug3HLA-C, LIG4, NCAM1
DDruggable family + AlphaFold only, no drug1DPH5
EDifficult family or no structure, no drug17SPRY1, PCDH15, HAMP, EPSTI1, HES6, GRID2IP, ABLIM2, MTSS1, HECW1, CPNE8 (+7 more)

Undrugged target profiles

21 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

SymbolChEMBL assaysDrugged partners (top 3)
NUDT60FGF2
SPRY10
PCDH159
HAMP9
EPSTI10
HES60
GRID2IP0
ABLIM20
MTSS10
HECW10
CPNE80
DPH50
FAM98A0
WSCD10
NALF10
MIR51960
HPN-AS10
HLA-C1
KDELR21
LIG42
NCAM12

Clinical trials & evidence

Clinical trials

Clinical trials: 805.

Phase distribution (across all retrieved trials)

PhaseTrials
Not specified573
PHASE289
PHASE453
PHASE338
PHASE123
PHASE2/PHASE318
PHASE1/PHASE28
EARLY_PHASE13

Top trials by phase / activity

NCTPhaseStatusTitle
NCT06271538PHASE4RECRUITINGEvaluation of Efficacy of Skål Pro Powder on Symptoms of Irritable Bowel Syndrome
NCT07426705PHASE4NOT_YET_RECRUITINGEffect of Multispecies Probiotic Supplementation on the Efficacy of Rifaximin α Therapy in Patients With Small Intestinal Bacterial Overgrowth (SIBO): a Randomized Placebo-controlled Trial
NCT07431957PHASE4NOT_YET_RECRUITINGEfficacy and Safety of Linaclotide in Chronic Constipation
NCT00331994PHASE4COMPLETEDEFESO - EFficacy Enterogermina Small Intestinal Bacterial Overgrowth
NCT00370032PHASE4COMPLETEDStudy to Assess the Effect Of Alosetron On Mucosal Blood Flow
NCT00401258PHASE4COMPLETEDAn Open-Label Trial of Duloxetine for the Treatment of Irritable Bowel Syndrome
NCT00418340PHASE4UNKNOWNManipulation of Visceral Sensitivity and Immune System in IBS
NCT00542295PHASE4COMPLETEDEfficacy and Safety of Meteospasmyl® in Irritable Bowel Syndrome
NCT00543478PHASE4UNKNOWNSaccharomyces Boulardii in Diarrhea Dominant Irritable Bowel Syndrome
NCT00610909PHASE4COMPLETEDParoxetine - Controlled Release in the Treatment of Irritable Bowel Syndrome (IBS)
NCT00693732PHASE4COMPLETEDValidation of Surrogate Measures in Irritable Bowel Syndrome (IBS)
NCT00779493PHASE4COMPLETEDCurcumin (Tumeric) in the Treatment of Irritable Bowel Syndrome: A Randomized-Controlled Trial
NCT00918411PHASE4COMPLETEDA Preliminary Study to Explore Clinical Endpoints in Patients (Male) With Diarrhea-predominant Irritable Bowel Syndrome
NCT00934973PHASE4COMPLETEDManagement of Irritable Bowel Syndrome in Primary Care (MIBS Trial)
NCT00961298PHASE4COMPLETEDAn Open Label Trial of Duloxetine in the Treatment of Irritable Bowel Syndrome and Comorbid Generalized Anxiety Disorder
NCT01139736PHASE4COMPLETEDManipulation of Visceral Hypersensitivity With Probiotic Bacteria in Irritable Bowel Syndrome
NCT01144832PHASE4COMPLETEDIrritable Bowel Syndrome (IBS) Treatment With H1-receptor Antagonists
NCT01225237PHASE4COMPLETEDA Study to Evaluate Efficacy of Ramosetron on Diarrhea-predominant Irritable Bowel Syndrome (IBS) in Male Patients
NCT01331213PHASE4COMPLETEDPregabalin on Colonic Motor and Sensory Function in Constipation Predominant Irritable Bowel Syndrome
NCT01337609PHASE4TERMINATEDStudy of Probiotic GanedenBC30 for Irritable Bowel Syndrome and Major Depressive Disorder
NCT01404923PHASE4COMPLETEDEffectiveness of On-demand Meteospasmyl® Use in Irritable Bowel Syndrome (IBS)
NCT01507922PHASE4COMPLETEDComparative Efficacy and Safety of Fenoverine
NCT01542268PHASE4UNKNOWNEffect of Pentoxifylline on Tight Junctions (TJs) of Intestinal Mucosa in Patients With Irritable Bowel Syndrome(IBS)
NCT01551225PHASE4COMPLETEDEscitalopram Trial for Irritable Bowel Syndrome (IBS) Patients With Panic Disorder
NCT01629212PHASE4UNKNOWNComparison of the Efficacy and Safety of Tiropramide and Octylonium in the Treatment of Irritable Bowel Syndrome
NCT01638208PHASE4UNKNOWNChanges in Gastrointestinal Microbiota Using VSL#3 in Patients With IBS-D
NCT01641341PHASE4COMPLETEDIrritable Bowel Syndrome Evaluation and Treatment in Primary Care
NCT01667627PHASE4COMPLETEDProbiotic in Irritable Bowel Syndrome (IBS) Patients With Diarrhea
NCT01678911PHASE4TERMINATEDEfficacy of Gralise® for Chronic Pelvic Pain
NCT01754493PHASE4COMPLETEDOpen Trial of Duloxetine in Outpatients With Irritable Bowel Syndrome Symptoms and Co-Morbid Major Depression
NCT01779765PHASE4UNKNOWNThe Efficacy of Hydrolyzed Guar Gum ( PHGG) in the Treatment of Patients With Irritable Bowel Syndrome (IBS)
NCT01886781PHASE4COMPLETEDEffect of Lactobacillus Plantarum 299v on Symptoms of Irritable Bowel Syndrome
NCT01887483PHASE4TERMINATEDVetal Laban Intervention Trial Assessing Bowel Symptoms
NCT01908465PHASE4COMPLETEDPeripheral Histamine 1 Receptor Blockade in IBS: Multicenter Trial
NCT02077699PHASE4COMPLETEDEfficacy Evaluation of a Commercial Preparation Containing Lactobacillus Casei DG on the Reduction of the Painful Symptoms Related to the Irritable Bowel Syndrome (IBS). A Pilot Clinical Study
NCT02386904PHASE4UNKNOWNSafety and Therapeutic Efficacy of Phosphate Enema (Kleen Enema) in Patients Undergoing Sigmoidoscopy
NCT02565550PHASE4UNKNOWNIs Microbiota Community Associated With Clinical Response to a Low FODMAP Diet in Patients With Irritable Bowel Syndrome
NCT02566876PHASE4COMPLETEDBifidobacteria In Children With Abdominal Pain-Associated Functional Gastrointestinal Disorders
NCT02573844PHASE4COMPLETEDPain Relief In Irritable Bowel Syndrome
NCT02937506PHASE4COMPLETEDPatient Satisfaction With Propofol for Out Patient Colonoscopy

Drugs tested across these trials (top 30)

MoleculeMax phaseTrials referencing
RIFAXIMIN49
ELUXADOLINE45
INULIN45
LUBIPROSTONE45
MESALAMINE45
RAMOSETRON45
LINACLOTIDE44
METHYLCELLULOSE44
PINAVERIUM44
ALOSETRON43
DULOXETINE43
EBASTINE43
TEGASEROD43
CROFELEMER42
DESIPRAMINE42
DRONABINOL42
NORTRIPTYLINE42
SIMETHICONE42
AMITRIPTYLINE41
AMITRIPTYLINE HYDROCHLORIDE41
CITALOPRAM41
CITALOPRAM HYDROBROMIDE41
COLESEVELAM41
DEXTROMETHORPHAN41
DEXTROMETHORPHAN HYDROBROMIDE41
DEXTROSE41
DOXEPIN41
ESCITALOPRAM41
ETHOSUXIMIDE41
GABAPENTIN41