Isolated cleft palate
diseaseOn this page
Also known as cleft palate, isolatedCPIdominant cleft palatenonsyndromic cleft palate
Summary
Isolated cleft palate (MONDO:0007336) is a disease with 10 cohort genes.
At a glance
- Cohort genes: 10
- ClinVar variants: 13
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | isolated cleft palate |
| Mondo ID | MONDO:0007336 |
| OMIM | 119540 |
| DOID | DOID:0110213 |
| UMLS | C1837218 |
| MedGen | 332392 |
| GARD | 0001896 |
| Is cancer (heuristic) | no |
Also known as: cleft palate, isolated · CPI · dominant cleft palate · isolated cleft palate · nonsyndromic cleft palate
Data availability: 13 ClinVar variants · 7 GenCC gene-disease records.
Disease family
An umbrella term covering 1 Mondo subtype.
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › orofacial cleft › cleft palate › isolated cleft palate
Related subtypes (8): cleft soft palate, Rapp-Hodgkin syndrome, bifid uvula, cleft palate with or without ankyloglossia, X-linked, cleft hard palate, submucosal cleft palate, Kuster syndrome, soft and hard cleft palate
Subtypes (1): orofacial cleft 3
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
13 retrieved; paginated sample, class counts are floors:
5 pathogenic, 3 conflicting classifications of pathogenicity, 2 uncertain significance, 1 likely pathogenic, 1 benign/likely benign, 1 benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1172586 | NM_198173.3(GRHL3):c.1172G>A (p.Arg391His) | GRHL3 | Pathogenic | no assertion criteria provided |
| 219244 | NM_198173.3(GRHL3):c.840+1G>T | GRHL3 | Pathogenic | criteria provided, single submitter |
| 219245 | NM_198173.3(GRHL3):c.916dup (p.Arg306fs) | GRHL3 | Pathogenic | criteria provided, single submitter |
| 219246 | NM_198173.3(GRHL3):c.1285+2del | GRHL3 | Pathogenic | criteria provided, single submitter |
| 522269 | NM_001172509.2(SATB2):c.1375C>T (p.Arg459Ter) | SATB2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1172584 | NM_198173.3(GRHL3):c.22A>G (p.Arg8Gly) | GRHL3 | Likely pathogenic | no assertion criteria provided |
| 219243 | NM_198173.3(GRHL3):c.738C>T (p.Gly246=) | GRHL3 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 39617 | NM_006206.6(PDGFRA):c.1631T>C (p.Val544Ala) | PDGFRA | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 39618 | NM_006206.6(PDGFRA):c.3155C>T (p.Thr1052Met) | PDGFRA | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 1338788 | NM_004815.4(ARHGAP29):c.1865C>T (p.Thr622Met) | ARHGAP29 | Uncertain significance | criteria provided, single submitter |
| 1172585 | NM_198173.3(GRHL3):c.32G>A (p.Arg11Gln) | GRHL3 | Uncertain significance | criteria provided, single submitter |
| 697696 | NM_198173.3(GRHL3):c.800C>G (p.Ala267Gly) | GRHL3 | Benign | criteria provided, multiple submitters, no conflicts |
| 39616 | NM_006206.6(PDGFRA):c.1202C>A (p.Ala401Asp) | PDGFRA | Benign/Likely benign | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 18 · Orphanet: 20 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| ACACB | Limited | Unknown | isolated cleft palate | |
| DENND4B | Limited | Unknown | isolated cleft palate | |
| PDGFRA | Limited | Unknown | isolated cleft palate | 8 |
| ARID5B | No Known Disease Relationship | Unknown | isolated cleft palate | |
| MIB1 | No Known Disease Relationship | Unknown | isolated cleft palate | 5 |
| MORN5 | No Known Disease Relationship | Unknown | isolated cleft palate | |
| UBB | No Known Disease Relationship | Autosomal dominant | isolated cleft palate |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| PDGFRA | Orphanet:168940 | Chronic eosinophilic leukemia |
| PDGFRA | Orphanet:168947 | Myeloid/lymphoid neoplasm associated with PDGFRA rearrangement |
| PDGFRA | Orphanet:199306 | Cleft lip/palate |
| PDGFRA | Orphanet:314950 | Primary hypereosinophilic syndrome |
| PDGFRA | Orphanet:44890 | Gastrointestinal stromal tumor |
| PDGFRA | Orphanet:585877 | B-lymphoblastic leukemia/lymphoma with recurrent genetic abnormality |
| UBB | Orphanet:101023 | Cleft hard palate |
| UBB | Orphanet:155878 | Submucosal cleft palate |
| UBB | Orphanet:99771 | Bifid uvula |
| UBB | Orphanet:99772 | Cleft velum |
| MIB1 | Orphanet:54260 | Left ventricular noncompaction |
| SATB2 | Orphanet:251019 | 2q32q33 deletion syndrome |
| SATB2 | Orphanet:251028 | SATB2-associated syndrome due to a chromosomal rearrangement |
| SATB2 | Orphanet:576283 | SATB2-associated syndrome due to a pathogenic variant |
| GRHL3 | Orphanet:101023 | Cleft hard palate |
| GRHL3 | Orphanet:155878 | Submucosal cleft palate |
| GRHL3 | Orphanet:888 | Van der Woude syndrome |
| GRHL3 | Orphanet:99771 | Bifid uvula |
| GRHL3 | Orphanet:99772 | Cleft velum |
| ARHGAP29 | Orphanet:199306 | Cleft lip/palate |
Cohort genes → proteins
10 cohort genes, 10 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 10 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| PDGFRA | HGNC:8803 | ENSG00000134853 | P16234 | Platelet-derived growth factor receptor alpha | gencc,clinvar |
| UBB | HGNC:12463 | ENSG00000170315 | P0CG47 | Polyubiquitin-B | gencc |
| ARID5B | HGNC:17362 | ENSG00000150347 | Q14865 | AT-rich interactive domain-containing protein 5B | gencc |
| MORN5 | HGNC:17841 | ENSG00000185681 | Q5VZ52 | MORN repeat-containing protein 5 | gencc |
| MIB1 | HGNC:21086 | ENSG00000101752 | Q86YT6 | E3 ubiquitin-protein ligase MIB1 | gencc |
| DENND4B | HGNC:29044 | ENSG00000198837 | O75064 | DENN domain-containing protein 4B | gencc |
| ACACB | HGNC:85 | ENSG00000076555 | O00763 | Acetyl-CoA carboxylase 2 | gencc |
| SATB2 | HGNC:21637 | ENSG00000119042 | Q9UPW6 | DNA-binding protein SATB2 | clinvar |
| GRHL3 | HGNC:25839 | ENSG00000158055 | Q8TE85 | Grainyhead-like protein 3 homolog | clinvar |
| ARHGAP29 | HGNC:30207 | ENSG00000137962 | Q52LW3 | Rho GTPase-activating protein 29 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| PDGFRA | Platelet-derived growth factor receptor alpha | Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. |
| UBB | Polyubiquitin-B | Exists either covalently attached to another protein, or free (unanchored). |
| ARID5B | AT-rich interactive domain-containing protein 5B | Transcription coactivator that binds to the 5’-AATA[CT]-3’ core sequence and plays a key role in adipogenesis and liver development. |
| MIB1 | E3 ubiquitin-protein ligase MIB1 | E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. |
| DENND4B | DENN domain-containing protein 4B | Guanine nucleotide exchange factor (GEF) which may activate RAB10. |
| ACACB | Acetyl-CoA carboxylase 2 | Mitochondrial enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA and plays a central role in fatty acid metabolism. |
| SATB2 | DNA-binding protein SATB2 | Binds to DNA, at nuclear matrix- or scaffold-associated regions. |
| GRHL3 | Grainyhead-like protein 3 homolog | Transcription factor playing important roles in primary neurulation and in the differentiation of stratified epithelia of both ectodermal and endodermal origin. |
| ARHGAP29 | Rho GTPase-activating protein 29 | GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state. |
Protein-family classification
Druggable: 2 · Difficult: 4 · Unknown: 4 · Druggable fraction: 0.2
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Transcription factor | 3 | 2.5× | 0.555 |
| Kinase | 1 | 2.8× | 0.727 |
| Scaffold/PPI | 1 | 1.7× | 0.727 |
| Enzyme (other) | 1 | 1.2× | 0.727 |
| Other/Unknown | 4 | 0.7× | 0.907 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| PDGFRA | Kinase | yes | 2.7.10.1 | Prot_kinase_dom, Ser-Thr/Tyr_kinase_cat_dom, Tyr_kinase_rcpt_3_CS |
| UBB | Other/Unknown | no | Ubiquitin-like_dom, Ubiquitin_CS, Ubiquitin_dom | |
| ARID5B | Other/Unknown | no | ARID_dom, ARID5B_ARID/BRIGHT_DNA-bd, ARID_dom_sf | |
| MORN5 | Other/Unknown | no | MORN, Morn5 | |
| MIB1 | Transcription factor | no | Znf_ZZ, Znf_RING, Ankyrin_rpt | |
| DENND4B | Other/Unknown | no | cDENN_dom, PPR_rpt, dDENN_dom | |
| ACACB | Enzyme (other) | yes | 6.3.4.14 | Biotin_lipoyl, CPAse_ATP-bd, BC-like_N |
| SATB2 | Transcription factor | no | HD, CUT_dom, Homeodomain-like_sf | |
| GRHL3 | Transcription factor | no | CP2, TF_CP2-like, GRHL1/CP2_C | |
| ARHGAP29 | Scaffold/PPI | no | RhoGAP_dom, PKC_DAG/PE, Rho_GTPase_activation_prot |
Expression context
Cohort genes with no expression data: 0.
10 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 10 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| tibia | 2 |
| decidua | 1 |
| synovial joint | 1 |
| adult organism | 1 |
| endothelial cell | 1 |
| pons | 1 |
| pericardium | 1 |
| saphenous vein | 1 |
| type B pancreatic cell | 1 |
| bronchial epithelial cell | 1 |
| bronchus | 1 |
| right uterine tube | 1 |
| corpus epididymis | 1 |
| kidney epithelium | 1 |
| granulocyte | 1 |
| right hemisphere of cerebellum | 1 |
| spleen | 1 |
| adipose tissue | 1 |
| subcutaneous adipose tissue | 1 |
| tendon of biceps brachii | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| PDGFRA | 289 | ubiquitous | marker | tibia, decidua, synovial joint |
| UBB | 305 | ubiquitous | marker | pons, adult organism, endothelial cell |
| ARID5B | 299 | ubiquitous | marker | type B pancreatic cell, saphenous vein, pericardium |
| MORN5 | 159 | broad | marker | bronchial epithelial cell, right uterine tube, bronchus |
| MIB1 | 262 | ubiquitous | marker | corpus epididymis, kidney epithelium, tibia |
| DENND4B | 289 | ubiquitous | marker | granulocyte, right hemisphere of cerebellum, spleen |
| ACACB | 288 | ubiquitous | marker | tendon of biceps brachii, adipose tissue, subcutaneous adipose tissue |
| SATB2 | 235 | ubiquitous | marker | periodontal ligament, cortical plate, mucosa of sigmoid colon |
| GRHL3 | 164 | broad | marker | lower esophagus mucosa, esophagus mucosa, gingival epithelium |
| ARHGAP29 | 283 | ubiquitous | marker | visceral pleura, parietal pleura, pleura |
Protein interactions among cohort
Intra-cohort edges: 1.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| PDGFRA | 5,186 |
| ACACB | 2,991 |
| MIB1 | 2,280 |
| SATB2 | 2,254 |
| ARID5B | 1,778 |
| ARHGAP29 | 1,278 |
| GRHL3 | 1,270 |
| UBB | 1,252 |
| MORN5 | 836 |
| DENND4B | 629 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ARHGAP29 | GRHL3 | string_interaction |
Structural data
PDB: 6 · AlphaFold-only: 4 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| UBB | P0CG47 | 287 |
| PDGFRA | P16234 | 15 |
| ACACB | O00763 | 11 |
| MIB1 | Q86YT6 | 6 |
| SATB2 | Q9UPW6 | 3 |
| ARID5B | Q14865 | 2 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| MORN5 | Q5VZ52 | 91.19 |
| DENND4B | O75064 | 73.32 |
| ARHGAP29 | Q52LW3 | 64.41 |
| GRHL3 | Q8TE85 | 61.27 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 259. Enrichment computed across 10 evidence-associated genes (8 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 8 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Constitutive Signaling by NOTCH1 HD Domain Mutants | 2 | 190.3× | 0.012 | UBB, MIB1 |
| NOTCH3 Activation and Transmission of Signal to the Nucleus | 2 | 119.0× | 0.012 | UBB, MIB1 |
| NOTCH2 Activation and Transmission of Signal to the Nucleus | 2 | 109.8× | 0.012 | UBB, MIB1 |
| Activated NOTCH1 Transmits Signal to the Nucleus | 2 | 89.2× | 0.014 | UBB, MIB1 |
| Imatinib-resistant PDGFR mutants | 1 | 1427.5× | 0.016 | PDGFRA |
| Sunitinib-resistant PDGFR mutants | 1 | 1427.5× | 0.016 | PDGFRA |
| Regorafenib-resistant PDGFR mutants | 1 | 1427.5× | 0.016 | PDGFRA |
| Sorafenib-resistant PDGFR mutants | 1 | 1427.5× | 0.016 | PDGFRA |
| PDGFR mutants bind TKIs | 1 | 1427.5× | 0.016 | PDGFRA |
| Constitutive Signaling by NOTCH1 PEST Domain Mutants | 2 | 49.2× | 0.016 | UBB, MIB1 |
| Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants | 2 | 49.2× | 0.016 | UBB, MIB1 |
| Maturation of protein E | 1 | 356.9× | 0.049 | UBB |
| Assembly Of The HIV Virion | 1 | 203.9× | 0.049 | UBB |
| Modulation by Mtb of host immune system | 1 | 203.9× | 0.049 | UBB |
| FLT3 signaling by CBL mutants | 1 | 203.9× | 0.049 | UBB |
| ChREBP activates metabolic gene expression | 1 | 158.6× | 0.049 | ACACB |
| Signaling by NOTCH1 HD Domain Mutants in Cancer | 1 | 158.6× | 0.049 | MIB1 |
| Myoclonic epilepsy of Lafora | 1 | 158.6× | 0.049 | UBB |
| PTK6 Regulates RTKs and Their Effectors AKT1 and DOK1 | 1 | 158.6× | 0.049 | UBB |
| InlA-mediated entry of Listeria monocytogenes into host cells | 1 | 158.6× | 0.049 | UBB |
| Prevention of phagosomal-lysosomal fusion | 1 | 158.6× | 0.049 | UBB |
| Downregulation of ERBB4 signaling | 1 | 142.8× | 0.049 | UBB |
| IRAK2 mediated activation of TAK1 complex | 1 | 142.8× | 0.049 | UBB |
| Biotin transport and metabolism | 1 | 129.8× | 0.049 | ACACB |
| Regulation of PTEN localization | 1 | 129.8× | 0.049 | UBB |
| TICAM1,TRAF6-dependent induction of TAK1 complex | 1 | 129.8× | 0.049 | UBB |
| Alpha-protein kinase 1 signaling pathway | 1 | 129.8× | 0.049 | UBB |
| Regulation of BACH1 activity | 1 | 129.8× | 0.049 | UBB |
| Josephin domain DUBs | 1 | 119.0× | 0.049 | UBB |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 9 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| roof of mouth development | 3 | 82.6× | 7e-04 | PDGFRA, ARID5B, SATB2 |
| fat pad development | 2 | 374.5× | 7e-04 | UBB, ARID5B |
| female gonad development | 2 | 178.3× | 0.002 | UBB, ARID5B |
| adrenal gland development | 2 | 149.8× | 0.002 | PDGFRA, ARID5B |
| platelet-derived growth factor receptor signaling pathway | 2 | 124.8× | 0.003 | PDGFRA, ARID5B |
| face morphogenesis | 2 | 110.1× | 0.003 | PDGFRA, ARID5B |
| embryonic skeletal system morphogenesis | 2 | 87.1× | 0.004 | PDGFRA, SATB2 |
| lactic acid secretion | 1 | 1872.4× | 0.007 | ACACB |
| intracellular aspartate homeostasis | 1 | 1872.4× | 0.007 | ACACB |
| energy homeostasis | 2 | 60.4× | 0.007 | UBB, ACACB |
| protein homotetramerization | 2 | 52.7× | 0.007 | UBB, ACACB |
| wound healing | 2 | 50.6× | 0.007 | PDGFRA, GRHL3 |
| hypothalamus gonadotrophin-releasing hormone neuron development | 1 | 936.2× | 0.008 | UBB |
| platelet-derived growth factor receptor-alpha signaling pathway | 1 | 936.2× | 0.008 | PDGFRA |
| regulation of cardiac muscle hypertrophy in response to stress | 1 | 936.2× | 0.008 | ACACB |
| malonyl-CoA biosynthetic process | 1 | 936.2× | 0.008 | ACACB |
| regulation of actin cytoskeleton organization | 2 | 35.0× | 0.010 | PDGFRA, GRHL3 |
| positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway | 1 | 624.1× | 0.011 | PDGFRA |
| metanephric glomerular capillary formation | 1 | 624.1× | 0.011 | PDGFRA |
| negative regulation of fatty acid beta-oxidation | 1 | 468.1× | 0.012 | ACACB |
| positive regulation of heart growth | 1 | 468.1× | 0.012 | ACACB |
| regulation of mesenchymal stem cell differentiation | 1 | 468.1× | 0.012 | PDGFRA |
| positive regulation of protein monoubiquitination | 1 | 374.5× | 0.015 | UBB |
| tricarboxylic acid metabolic process | 1 | 312.1× | 0.016 | ACACB |
| intracellular glutamate homeostasis | 1 | 312.1× | 0.016 | ACACB |
| positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator | 1 | 312.1× | 0.016 | UBB |
| acetyl-CoA metabolic process | 1 | 267.5× | 0.017 | ACACB |
| regulation of Rab protein signal transduction | 1 | 267.5× | 0.017 | DENND4B |
| neural tube formation | 1 | 234.1× | 0.018 | MIB1 |
| modification-dependent protein catabolic process | 1 | 234.1× | 0.018 | UBB |
Therapeutics
Drug target analysis
Approved (phase 4): 2 · Phase ≥3: 2 · Phased (≥1): 2 · Undrugged: 8
Druggability breadth: 4 of 10 evidence-associated genes (40%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| PDGFRA | PONATINIB |
| ACACB | BEMPEDOIC ACID |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| PDGFRA | 77 | 4 |
| ACACB | 4 | 4 |
| UBB | 0 | 0 |
| ARID5B | 0 | 0 |
| MORN5 | 0 | 0 |
| MIB1 | 0 | 0 |
| DENND4B | 0 | 0 |
| SATB2 | 0 | 0 |
| GRHL3 | 0 | 0 |
| ARHGAP29 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| PONATINIB | 4 | PDGFRA |
| FEDRATINIB | 4 | PDGFRA |
| TIVOZANIB | 4 | PDGFRA |
| LENVATINIB | 4 | PDGFRA |
| AXITINIB | 4 | PDGFRA |
| SORAFENIB | 4 | PDGFRA |
| IMATINIB MESYLATE | 4 | PDGFRA |
| INFIGRATINIB PHOSPHATE | 4 | PDGFRA |
| INFIGRATINIB | 4 | PDGFRA |
| REGORAFENIB | 4 | PDGFRA |
| CERITINIB | 4 | PDGFRA |
| VANDETANIB | 4 | PDGFRA |
| NILOTINIB | 4 | PDGFRA |
| BOSUTINIB | 4 | PDGFRA |
| NINTEDANIB ESYLATE | 4 | PDGFRA |
| PEXIDARTINIB | 4 | PDGFRA |
| AVAPRITINIB | 4 | PDGFRA |
| RIPRETINIB | 4 | PDGFRA |
| PAZOPANIB | 4 | PDGFRA |
| NINTEDANIB | 4 | PDGFRA |
| SUNITINIB | 4 | PDGFRA |
| DASATINIB | 4 | PDGFRA |
| ERLOTINIB | 4 | PDGFRA |
| QUIZARTINIB | 4 | PDGFRA |
| MIDOSTAURIN | 4 | PDGFRA |
| IMATINIB | 4 | PDGFRA |
| BEMPEDOIC ACID | 4 | ACACB |
| VATALANIB | 3 | PDGFRA |
| MASITINIB | 3 | PDGFRA |
| CRENOLANIB | 3 | PDGFRA |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 2.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| PDGFRA | 1,172 | Binding:1160, Functional:8, ADMET:4 |
| ACACB | 81 | Binding:81 |
| SATB2 | 6 | Binding:6 |
| UBB | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| PDGFRA | 2.7.10.1 | receptor protein-tyrosine kinase |
| ACACB | 6.3.4.14, 6.4.1.2 | biotin carboxylase, acetyl-CoA carboxylase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| PDGFRA | 1,172 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 10; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| PONATINIB | 4 | PDGFRA |
| FEDRATINIB | 4 | PDGFRA |
| TIVOZANIB | 4 | PDGFRA |
| LENVATINIB | 4 | PDGFRA |
| AXITINIB | 4 | PDGFRA |
| SORAFENIB | 4 | PDGFRA |
| IMATINIB MESYLATE | 4 | PDGFRA |
| INFIGRATINIB PHOSPHATE | 4 | PDGFRA |
| INFIGRATINIB | 4 | PDGFRA |
| REGORAFENIB | 4 | PDGFRA |
| CERITINIB | 4 | PDGFRA |
| VANDETANIB | 4 | PDGFRA |
| NILOTINIB | 4 | PDGFRA |
| BOSUTINIB | 4 | PDGFRA |
| NINTEDANIB ESYLATE | 4 | PDGFRA |
| PEXIDARTINIB | 4 | PDGFRA |
| AVAPRITINIB | 4 | PDGFRA |
| RIPRETINIB | 4 | PDGFRA |
| PAZOPANIB | 4 | PDGFRA |
| NINTEDANIB | 4 | PDGFRA |
| SUNITINIB | 4 | PDGFRA |
| DASATINIB | 4 | PDGFRA |
| ERLOTINIB | 4 | PDGFRA |
| QUIZARTINIB | 4 | PDGFRA |
| MIDOSTAURIN | 4 | PDGFRA |
| IMATINIB | 4 | PDGFRA |
| BEMPEDOIC ACID | 4 | ACACB |
| VATALANIB | 3 | PDGFRA |
| MASITINIB | 3 | PDGFRA |
| CRENOLANIB | 3 | PDGFRA |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 2 | PDGFRA, ACACB |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 8 | UBB, ARID5B, MORN5, MIB1, DENND4B, SATB2, GRHL3, ARHGAP29 |
Undrugged target profiles
8 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| UBB | 1 | — |
| ARID5B | 0 | — |
| MORN5 | 0 | — |
| MIB1 | 0 | — |
| DENND4B | 0 | — |
| SATB2 | 6 | — |
| GRHL3 | 0 | — |
| ARHGAP29 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.