Machado-Joseph disease
diseaseOn this page
Also known as autosomal dominant striatonigral degenerationAzorean disease of the nervous systemMachado diseaseMJDNigro-spino-dentatal degeneration with nuclear ophthalmoplegiaSCA3spinocerebellar ataxia 3spinocerebellar ataxia type 3spinocerebellar atrophy type 3
Summary
Machado-Joseph disease (MONDO:0007182) is a disease caused by ATXN3 (GenCC Definitive), with 6 cohort genes (8 GWAS associations across 1 studies) and 30 clinical trials. Top therapeutic interventions include phenylbutanoic acid, lithium carbonate, and varenicline.
At a glance
- Prevalence: 1-9 / 100 000 (Worldwide) [Orphanet-validated]
- Causal gene: ATXN3 (GenCC Definitive)
- Cohort genes: 6
- GWAS associations: 8
- ClinVar variants: 9
- Phenotypes (HPO): 16
- Clinical trials: 30
Clinical features
Epidemiology
Prevalence records
3 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Point prevalence | 1-9 / 100 000 | 1.5 | Worldwide | Validated |
| Point prevalence | 1-9 / 100 000 | 1 | Portugal | Validated |
| Point prevalence | 1-9 / 100 000 | 5.5 | Japan | Validated |
Signs & symptoms
Clinical features (HPO)
16 HPO clinical features (Orphanet curated; top 16 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0000520 | Proptosis | Very frequent (80-99%) |
| HP:0000590 | Progressive external ophthalmoplegia | Very frequent (80-99%) |
| HP:0000639 | Nystagmus | Very frequent (80-99%) |
| HP:0000651 | Diplopia | Very frequent (80-99%) |
| HP:0000750 | Delayed speech and language development | Very frequent (80-99%) |
| HP:0001260 | Dysarthria | Very frequent (80-99%) |
| HP:0001332 | Dystonia | Very frequent (80-99%) |
| HP:0001347 | Hyperreflexia | Very frequent (80-99%) |
| HP:0002071 | Abnormality of extrapyramidal motor function | Very frequent (80-99%) |
| HP:0002073 | Progressive cerebellar ataxia | Very frequent (80-99%) |
| HP:0002312 | Clumsiness | Very frequent (80-99%) |
| HP:0003202 | Skeletal muscle atrophy | Very frequent (80-99%) |
| HP:0007256 | Abnormal pyramidal sign | Very frequent (80-99%) |
| HP:0001605 | Vocal cord paralysis | Occasional (5-29%) |
| HP:0001751 | Abnormal vestibular function | Occasional (5-29%) |
| HP:0004370 | Abnormality of temperature regulation | Occasional (5-29%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | Machado-Joseph disease |
| Mondo ID | MONDO:0007182 |
| MeSH | D017827 |
| OMIM | 109150 |
| Orphanet | 98757 |
| DOID | DOID:1440 |
| NCIT | C84830 |
| SNOMED CT | 91952008 |
| UMLS | C0024408 |
| MedGen | 9841 |
| GARD | 0006801 |
| NORD | 1389 |
| Is cancer (heuristic) | no |
Also known as: autosomal dominant striatonigral degeneration · Azorean disease of the nervous system · Machado disease · Machado-Joseph disease · MJD · Nigro-spino-dentatal degeneration with nuclear ophthalmoplegia · SCA3 · spinocerebellar ataxia 3 · spinocerebellar ataxia type 3 · spinocerebellar atrophy type 3
Data availability: 9 ClinVar variants · 8 GWAS associations (1 study) · 3 GenCC gene-disease records · 42 cell lines.
Disease family
An umbrella term covering 4 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › nervous system disorder › central nervous system disorder › neurodegenerative disease › inherited neurodegenerative disorder › Huntington disease and related disorders › Huntington disease-like syndrome › Machado-Joseph disease
Related subtypes (9): dentatorubral-pallidoluysian atrophy, spinocerebellar ataxia type 1, spinocerebellar ataxia type 2, Huntington disease-like 3, neuroferritinopathy, spinocerebellar ataxia type 17, neuroacanthocytosis, Huntington disease-like syndrome due to C9ORF72 expansions, childhood-onset benign chorea with striatal involvement
Subtypes (4): Machado-Joseph disease type 1, Machado-Joseph disease type 2, Machado-Joseph disease type 3, Machado-Joseph disease type 4
Genetics & variants
GWAS landscape
8 GWAS associations across 1 studies. Top hits map to 6 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs11529293 | 3e-06 | IFTAP - RPL7AP56 | T | 2.71 |
| rs11857349 | 3e-06 | LRRC28, LINC02244 | G | 4.58 |
| rs62171220 | 4e-06 | THSD7B | G | 2.71 |
| rs7480166 | 4e-06 | LINC02740 - HNRNPKP3 | A | 1.86 |
| rs72660056 | 4e-06 | ATP11A | A | 3.29 |
| rs8141510 | 4e-06 | NFAM1 | T | 1.83 |
| rs144891322 | 5e-06 | RPS2P25 - PTP4A1P4 | C | 6.1 |
| rs2067390 | 6e-06 | INPP1 | A | 4.74 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST010248 | Akcimen F | 2020 | 700 | 0 | Genome-wide association study identifies genetic factors that modify age at onset in Machado-Joseph disease. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 0 |
| Tier 2: splice/UTR | 0 |
| Tier 3: regulatory | 0 |
| Tier 4: intronic/intergenic | 8 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 6 |
| low_freq (0.01-0.05) | 2 |
| rare (<0.01) | 0 |
| unknown | 0 |
Functional consequences
| Consequence | Count |
|---|---|
| intron_variant | 6 |
| intergenic_variant | 2 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| rs11529293 | 11 | 36833838 | C>G,T | 0.118 | intron_variant | IFTAP - RPL7AP56 | 3e-06 | Tier 4: intronic/intergenic |
| rs11857349 | 15 | 99384652 | A>G,T | 0.058 | intron_variant | LRRC28, LINC02244 | 3e-06 | Tier 4: intronic/intergenic |
| rs62171220 | 2 | 137045285 | C>G,T | 0.106 | intron_variant | THSD7B | 4e-06 | Tier 4: intronic/intergenic |
| rs7480166 | 11 | 42963203 | G>A,C,T | 0.404 | intergenic_variant | LINC02740 - HNRNPKP3 | 4e-06 | Tier 4: intronic/intergenic |
| rs72660056 | 13 | 112853229 | G>A,T | 0.068 | intron_variant | ATP11A | 4e-06 | Tier 4: intronic/intergenic |
| rs8141510 | 22 | 42425179 | C>T | 0.425 | intron_variant | NFAM1 | 4e-06 | Tier 4: intronic/intergenic |
| rs144891322 | 5 | 85839569 | T>C | 0.021 | intergenic_variant | RPS2P25 - PTP4A1P4 | 5e-06 | Tier 4: intronic/intergenic |
| rs2067390 | 2 | 190344302 | T>A,G | 0.038 | intron_variant | INPP1 | 6e-06 | Tier 4: intronic/intergenic |
ClinVar germline variants
9 retrieved; paginated sample, class counts are floors:
3 benign, 2 uncertain significance, 1 pathogenic, 1 pathogenic; risk factor, 1 likely pathogenic, 1 conflicting classifications of pathogenicity
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 209995 | NM_004993.5(ATXN3):c.886_888CAG(60_86) (p.Gln305_Gly306insGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGln) | ATXN3 | Pathogenic | no assertion criteria provided |
| 3551 | NM_004993.6(ATXN3):c.892CAG[8_36] | ATXN3 | Pathogenic; risk factor | no assertion criteria provided |
| 3780671 | NM_004993.6(ATXN3):c.916_917insCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC (p.Gly306fs) | ATXN3 | Likely pathogenic | criteria provided, single submitter |
| 402402 | NM_004993.6(ATXN3):c.916_917insC (p.Gly306fs) | ATXN3 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 3780672 | NM_004993.6(ATXN3):c.915_916insCAGCAGCAGCAGCAGCAGCAGCAGCAGCA (p.Gly306fs) | ATXN3 | Uncertain significance | criteria provided, single submitter |
| 3780673 | NM_004993.6(ATXN3):c.891_892insGCAGCAGCAGCAG (p.Gln298fs) | ATXN3 | Uncertain significance | criteria provided, single submitter |
| 128515 | NM_004993.6(ATXN3):c.916G>C (p.Gly306Arg) | ATXN3 | Benign | criteria provided, single submitter |
| 209994 | NM_004993.5(ATXN3):c.886_888CAG(12_44) (p.Gln305_Gly306insGlnGlnGlnGlnGlnGlnGlnGlnGlnGlnGln) | ATXN3 | Benign | no assertion criteria provided |
| 931861 | NM_004993.6(ATXN3):c.892CAG[12] (p.Gln302_Gln305dup) | ATXN3 | Benign | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 6 · Orphanet: 5 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| ATXN3 | Definitive | Autosomal dominant | Machado-Joseph disease | 6 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| ATXN3 | Orphanet:276238 | Machado-Joseph disease type 1 |
| ATXN3 | Orphanet:276241 | Machado-Joseph disease type 2 |
| ATXN3 | Orphanet:276244 | Machado-Joseph disease type 3 |
| ATP11A | Orphanet:2032 | Idiopathic pulmonary fibrosis |
| ATP11A | Orphanet:90635 | Rare autosomal dominant non-syndromic sensorineural deafness type DFNA |
Cohort genes → proteins
6 cohort genes, 6 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 5 |
| multi_evidence | 1 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| ATXN3 | HGNC:7106 | ENSG00000066427 | P54252 | Ataxin-3 | gencc,clinvar |
| ATP11A | HGNC:13552 | ENSG00000068650 | P98196 | Phospholipid-transporting ATPase IH | gwas |
| LRRC28 | HGNC:28355 | ENSG00000168904 | Q86X40 | Leucine-rich repeat-containing protein 28 | gwas |
| THSD7B | HGNC:29348 | ENSG00000144229 | Q9C0I4 | Thrombospondin type-1 domain-containing protein 7B | gwas |
| NFAM1 | HGNC:29872 | ENSG00000235568 | Q8NET5 | NFAT activation molecule 1 | gwas |
| INPP1 | HGNC:6071 | ENSG00000151689 | P49441 | Inositol polyphosphate 1-phosphatase | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| ATXN3 | Ataxin-3 | Deubiquitinating enzyme involved in protein homeostasis maintenance, transcription, cytoskeleton regulation, myogenesis and degradation of misfolded chaperone substrates. |
| ATP11A | Phospholipid-transporting ATPase IH | Catalytic component of a P4-ATPase flippase complex which catalyzes the hydrolysis of ATP coupled to the transport of aminophospholipids, phosphatidylserines (PS) and phosphatidylethanolamines (PE), from the outer to the inner leaflet of t… |
| NFAM1 | NFAT activation molecule 1 | May function in immune system as a receptor which activates via the calcineurin/NFAT-signaling pathway the downstream cytokine gene promoters. |
| INPP1 | Inositol polyphosphate 1-phosphatase | Mg(2+)-dependent phosphatase that catalyzes the hydrolysis of the 1-position phosphate from inositol 1,4-bisphosphate and inositol 1,3,4-trisphosphate and participates in inositol phosphate metabolism. |
Protein-family classification
Druggable: 1 · Difficult: 1 · Unknown: 4 · Druggable fraction: 0.17
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Phosphatase | 1 | 14.0× | 0.208 |
| Transcription factor | 1 | 1.4× | 0.539 |
| Other/Unknown | 4 | 1.2× | 0.539 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| ATXN3 | Other/Unknown | no | UIM_dom, Josephin, Ataxin-3 | |
| ATP11A | Transcription factor | no | 7.6.2.1 | P_typ_ATPase, P-type_ATPase_IV, ATPase_P-typ_transduc_dom_A_sf |
| LRRC28 | Other/Unknown | no | Leu-rich_rpt, Leu-rich_rpt_typical-subtyp, LRR_dom_sf | |
| THSD7B | Other/Unknown | no | TSP1_rpt, TSP1_rpt_sf, TSP1_spondin_dom | |
| NFAM1 | Other/Unknown | no | Phos_immunorcpt_sig_ITAM, NFAM1, Ig_NFAM1 | |
| INPP1 | Phosphatase | yes | 3.1.3.57 | Inositol_monophosphatase-like, Inositol_monophosphatase_CS, Inositol_monoP_metal-BS |
Expression context
Cohort genes with no expression data: 0.
6 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 6 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| calcaneal tendon | 1 |
| colonic epithelium | 1 |
| tendon | 1 |
| germinal epithelium of ovary | 1 |
| heart right ventricle | 1 |
| visceral pleura | 1 |
| ileal mucosa | 1 |
| left testis | 1 |
| right testis | 1 |
| cortical plate | 1 |
| male germ line stem cell (sensu Vertebrata) in testis | 1 |
| pigmented layer of retina | 1 |
| blood | 1 |
| leukocyte | 1 |
| monocyte | 1 |
| esophagus squamous epithelium | 1 |
| male germ cell | 1 |
| sperm | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| ATXN3 | 269 | ubiquitous | marker | calcaneal tendon, colonic epithelium, tendon |
| ATP11A | 268 | ubiquitous | marker | germinal epithelium of ovary, visceral pleura, heart right ventricle |
| LRRC28 | 216 | ubiquitous | marker | ileal mucosa, left testis, right testis |
| THSD7B | 151 | broad | marker | male germ line stem cell (sensu Vertebrata) in testis, pigmented layer of retina, cortical plate |
| NFAM1 | 229 | broad | marker | monocyte, leukocyte, blood |
| INPP1 | 293 | ubiquitous | marker | sperm, male germ cell, esophagus squamous epithelium |
Protein interactions among cohort
Intra-cohort edges: 0.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| ATXN3 | 3,125 |
| ATP11A | 1,512 |
| INPP1 | 1,183 |
| NFAM1 | 901 |
| THSD7B | 756 |
| LRRC28 | 674 |
Structural data
PDB: 1 · AlphaFold-only: 5 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| ATXN3 | P54252 | 7 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| LRRC28 | Q86X40 | 90.30 |
| INPP1 | P49441 | 87.87 |
| ATP11A | P98196 | 83.48 |
| NFAM1 | Q8NET5 | 72.19 |
| THSD7B | Q9C0I4 | 67.23 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 25. Enrichment computed across 6 evidence-associated genes (5 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Josephin domain DUBs | 1 | 190.3× | 0.054 | ATXN3 |
| Synthesis of IP2, IP, and Ins in the cytosol | 1 | 152.3× | 0.054 | INPP1 |
| Inositol phosphate metabolism | 1 | 95.2× | 0.054 | INPP1 |
| FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes | 1 | 76.1× | 0.054 | ATXN3 |
| FOXO-mediated transcription | 1 | 67.2× | 0.054 | ATXN3 |
| Defective B3GALTL causes PpS | 1 | 61.7× | 0.054 | THSD7B |
| O-glycosylation of TSR domain-containing proteins | 1 | 60.1× | 0.054 | THSD7B |
| Neutrophil degranulation | 2 | 9.2× | 0.054 | ATP11A, NFAM1 |
| Diseases associated with O-glycosylation of proteins | 1 | 43.1× | 0.055 | THSD7B |
| Ion transport by P-type ATPases | 1 | 41.5× | 0.055 | ATP11A |
| Post-translational protein modification | 2 | 7.7× | 0.055 | ATXN3, THSD7B |
| O-linked glycosylation | 1 | 28.9× | 0.071 | THSD7B |
| Diseases of glycosylation | 1 | 26.2× | 0.071 | THSD7B |
| Deubiquitination | 1 | 24.8× | 0.071 | ATXN3 |
| Ion channel transport | 1 | 19.2× | 0.085 | ATP11A |
| Metabolism of proteins | 2 | 5.0× | 0.086 | ATXN3, THSD7B |
| Diseases of metabolism | 1 | 16.1× | 0.089 | THSD7B |
| Innate Immune System | 1 | 5.1× | 0.242 | ATP11A |
| Transport of small molecules | 1 | 5.0× | 0.242 | ATP11A |
| RNA Polymerase II Transcription | 1 | 4.5× | 0.254 | ATXN3 |
| Gene expression (Transcription) | 1 | 3.6× | 0.298 | ATXN3 |
| Generic Transcription Pathway | 1 | 3.0× | 0.330 | ATXN3 |
| Disease | 1 | 2.6× | 0.344 | THSD7B |
| Immune System | 1 | 2.6× | 0.344 | ATP11A |
| Metabolism | 1 | 2.3× | 0.362 | INPP1 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 6 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| protein localization to cytosolic proteasome complex | 1 | 2808.7× | 0.013 | ATXN3 |
| regulation of cell-substrate adhesion | 1 | 936.2× | 0.018 | ATXN3 |
| regulation of membrane lipid distribution | 1 | 468.1× | 0.018 | ATP11A |
| positive regulation of B cell receptor signaling pathway | 1 | 401.2× | 0.018 | NFAM1 |
| actin cytoskeleton organization | 2 | 26.4× | 0.018 | ATXN3, THSD7B |
| monoubiquitinated protein deubiquitination | 1 | 312.1× | 0.018 | ATXN3 |
| positive regulation of myotube differentiation | 1 | 255.3× | 0.018 | ATP11A |
| cellular response to misfolded protein | 1 | 234.1× | 0.018 | ATXN3 |
| regulation of B cell differentiation | 1 | 216.1× | 0.018 | NFAM1 |
| phosphate-containing compound metabolic process | 1 | 165.2× | 0.018 | INPP1 |
| intermediate filament cytoskeleton organization | 1 | 156.0× | 0.018 | ATXN3 |
| positive regulation of ERAD pathway | 1 | 147.8× | 0.018 | ATXN3 |
| calcineurin-NFAT signaling cascade | 1 | 140.4× | 0.018 | NFAM1 |
| protein quality control for misfolded or incompletely synthesized proteins | 1 | 127.7× | 0.018 | ATXN3 |
| exploration behavior | 1 | 108.0× | 0.018 | ATXN3 |
| protein K48-linked deubiquitination | 1 | 108.0× | 0.018 | ATXN3 |
| phospholipid translocation | 1 | 104.0× | 0.018 | ATP11A |
| protein K63-linked deubiquitination | 1 | 104.0× | 0.018 | ATXN3 |
| intracellular signal transduction | 2 | 12.7× | 0.018 | LRRC28, NFAM1 |
| positive regulation of ubiquitin-dependent protein catabolic process | 1 | 93.6× | 0.019 | ATXN3 |
| phosphatidylinositol phosphate biosynthetic process | 1 | 80.2× | 0.021 | INPP1 |
| B cell receptor signaling pathway | 1 | 66.9× | 0.024 | NFAM1 |
| nucleotide-excision repair | 1 | 63.8× | 0.024 | ATXN3 |
| cellular response to heat | 1 | 57.3× | 0.026 | ATXN3 |
| negative regulation of TORC1 signaling | 1 | 54.0× | 0.026 | ATXN3 |
| cellular response to amino acid starvation | 1 | 53.0× | 0.026 | ATXN3 |
| positive regulation of cytokine production | 1 | 45.3× | 0.029 | NFAM1 |
| B cell differentiation | 1 | 36.5× | 0.035 | NFAM1 |
| protein deubiquitination | 1 | 29.6× | 0.041 | ATXN3 |
| microtubule cytoskeleton organization | 1 | 20.2× | 0.057 | ATXN3 |
Therapeutics
Drugs indicated for this disease
No approved or late-stage (phase ≥3) drug is indicated for this disease; the following are in earlier-phase trials only.
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Lithium Carbonate, Trehalose, Varenicline.
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 6
Druggability breadth: 1 of 6 evidence-associated genes (17%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| ATXN3 | 0 | 0 |
| ATP11A | 0 | 0 |
| LRRC28 | 0 | 0 |
| THSD7B | 0 | 0 |
| NFAM1 | 0 | 0 |
| INPP1 | 0 | 0 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 2.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| ATXN3 | 7 | Binding:7 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| ATP11A | 7.6.2.1 | P-type phospholipid transporter |
| INPP1 | 3.1.3.57 | inositol-1,4-bisphosphate 1-phosphatase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 6; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 1 | INPP1 |
| E | Difficult family or no structure, no drug | 5 | ATXN3, ATP11A, LRRC28, THSD7B, NFAM1 |
Undrugged target profiles
6 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| ATXN3 | 7 | — |
| ATP11A | 0 | — |
| LRRC28 | 0 | — |
| THSD7B | 0 | — |
| NFAM1 | 0 | — |
| INPP1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 30.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 18 |
| PHASE2 | 6 |
| PHASE2/PHASE3 | 2 |
| PHASE3 | 2 |
| PHASE1/PHASE2 | 1 |
| PHASE1 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03408080 | PHASE3 | ACTIVE_NOT_RECRUITING | Open Pilot Trial of BHV-4157 |
| NCT03701399 | PHASE3 | ACTIVE_NOT_RECRUITING | Troriluzole in Adult Participants With Spinocerebellar Ataxia |
| NCT01096082 | PHASE2/PHASE3 | COMPLETED | Safety and Efficacy of Lithium Carbonate in Patients With Spinocerebellar Ataxia Type 3 |
| NCT05490563 | PHASE2/PHASE3 | TERMINATED | STRIDES - a Clinical Research Study of an Investigational New Drug to Treat Spinocerebellar Ataxia |
| NCT03378414 | PHASE2 | NOT_YET_RECRUITING | Umbilical Cord Mesenchymal Stem Cells Therapy (19#iSCLife®-SA) for Patients With Spinocerebellar Ataxia |
| NCT05822908 | PHASE1/PHASE2 | RECRUITING | A Safety and Pharmacokinetics Trial of VO659 in SCA1, SCA3 and HD |
| NCT00992771 | PHASE2 | COMPLETED | Study to Determine the Safety and Tolerability of Varenicline (Chantix®) in Treating Spinocerebellar Ataxia Type 3 |
| NCT01096095 | PHASE2 | WITHDRAWN | Pilot Study of Safety and Efficacy of Sodium Phenylbutyrate in Spinocerebellar Ataxia Type 3 |
| NCT02039206 | PHASE2 | COMPLETED | The Influence of Deep TMS on Cerebellar Signs in Patients With Machado Joseph Disease |
| NCT02147886 | PHASE2 | COMPLETED | Study To Assess Safety, Tolerability and Efficacy of Intravenous Cabaletta in Patients With Machado-Joseph Disease |
| NCT04301284 | PHASE2 | WITHDRAWN | Study of CAD-1883 for Spinocerebellar Ataxia |
| NCT05160558 | PHASE1 | TERMINATED | A Pharmacokinetics and Safety Study of BIIB132 in Adults With Spinocerebellar Ataxia 3 |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT05826171 | Not specified | ACTIVE_NOT_RECRUITING | Priming Motor Learning Through Exercise in People With Spinocerebellar Ataxia |
| NCT01060371 | Not specified | UNKNOWN | Natural History Study of and Genetic Modifiers in Spinocerebellar Ataxias |
| NCT02175290 | Not specified | UNKNOWN | Machado-Joseph Disease in Israel |
| NCT02906046 | Not specified | COMPLETED | Weight in Lower Limbs Improves Gait Ataxia of in Machado-Joseph Disease Patients |
| NCT03120013 | Not specified | COMPLETED | Rehabilitative Trial With Cerebello-Spinal tDCS in Neurodegenerative Ataxia |
| NCT03487367 | Not specified | UNKNOWN | Clinical Trial Readiness for SCA1 and SCA3 |
| NCT03885167 | Not specified | COMPLETED | Identification of Biomarkers in Spinocerebellar Ataxia 3 |
| NCT04153110 | Not specified | COMPLETED | Cerebello-Spinal tDCS as Rehabilitative Intervention in Neurodegenerative Ataxia |
| NCT04229823 | Not specified | UNKNOWN | Natural History of Oculomotor Neurophysiology in Ataxic and Pre-ataxic Carriers of SCA3/MJD |
| NCT04268147 | Not specified | COMPLETED | Instrumented Data Exchange for Ataxia Study |
| NCT04399265 | Not specified | UNKNOWN | Efficacy Of Oral Trehalose In Spinocerebellar Ataxia 3 |
| NCT04419974 | Not specified | UNKNOWN | Astrocytic Markers and the Pre-ataxic Period of SCA3/MJD - BIGPRO Study Astrocytes |
| NCT04426149 | Not specified | COMPLETED | Clinical Effects of Oral Trehalose In Patients With Spinocerebellar Ataxia 3 |
| NCT04714307 | Not specified | UNKNOWN | Neuropsychiatry and Cognition in SCA3/MJD |
| NCT05486806 | Not specified | UNKNOWN | Longitudinal Tracking of Patients Diagnosed With Neurodegenerative Movement Disorders |
| NCT05502432 | Not specified | COMPLETED | Repetitive Transcranial Magnetic Stimulation in SCA3 Patients |
| NCT05557786 | Not specified | COMPLETED | Treatment of Transcranial Alternating Current Stimulation(tACS)on Cerebellar Ataxia |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| PHENYLBUTANOIC ACID | 4 | 2 |
| LITHIUM CARBONATE | 4 | 1 |
| VARENICLINE | 4 | 1 |
| TRORILUZOLE | 3 | 3 |
| TREHALOSE | 3 | 2 |
| MALTOSE | 3 | 1 |
| RIMTUZALCAP | 2 | 1 |
Related Atlas pages
- Cohort genes: ATXN3, ATP11A, LRRC28, THSD7B, NFAM1, INPP1
- Drugs: Phenylbutanoic Acid, Lithium Carbonate, Varenicline, Troriluzole, Trehalose, Maltose