Melnick-Needles syndrome
diseaseOn this page
Also known as Melnick Needles SyndromeMelnick-Needles osteodysplastyMelnick-Needles syndrome, X-linked dominantMNS
Summary
Melnick-Needles syndrome (MONDO:0010650) is a disease caused by FLNA (GenCC Definitive), with 7 cohort genes.
At a glance
- Prevalence: <1 / 1 000 000 (Worldwide) [Orphanet-validated]
- Causal gene: FLNA (GenCC Definitive)
- Cohort genes: 7
- ClinVar variants: 3,166
- Phenotypes (HPO): 35
Clinical features
Epidemiology
Prevalence records
2 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Cases/families | 70 | Worldwide | Validated | |
| Point prevalence | <1 / 1 000 000 | Worldwide | Validated |
Signs & symptoms
Clinical features (HPO)
35 HPO clinical features (Orphanet curated; top 35 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0000270 | Delayed cranial suture closure | Very frequent (80-99%) |
| HP:0000316 | Hypertelorism | Very frequent (80-99%) |
| HP:0000336 | Prominent supraorbital ridges | Very frequent (80-99%) |
| HP:0000347 | Micrognathia | Very frequent (80-99%) |
| HP:0000520 | Proptosis | Very frequent (80-99%) |
| HP:0000774 | Narrow chest | Very frequent (80-99%) |
| HP:0000944 | Abnormal metaphysis morphology | Very frequent (80-99%) |
| HP:0003103 | Abnormal cortical bone morphology | Very frequent (80-99%) |
| HP:0004322 | Short stature | Very frequent (80-99%) |
| HP:0006487 | Bowing of the long bones | Very frequent (80-99%) |
| HP:0010306 | Short thorax | Very frequent (80-99%) |
| HP:0001382 | Joint hypermobility | Frequent (30-79%) |
| HP:0000076 | Vesicoureteral reflux | Frequent (30-79%) |
| HP:0000126 | Hydronephrosis | Frequent (30-79%) |
| HP:0000293 | Full cheeks | Frequent (30-79%) |
| HP:0000324 | Facial asymmetry | Frequent (30-79%) |
| HP:0000365 | Hearing impairment | Frequent (30-79%) |
| HP:0000684 | Delayed eruption of teeth | Frequent (30-79%) |
| HP:0000692 | Tooth malposition | Frequent (30-79%) |
| HP:0000772 | Abnormal rib morphology | Frequent (30-79%) |
| HP:0000894 | Short clavicles | Frequent (30-79%) |
| HP:0001671 | Abnormal cardiac septum morphology | Frequent (30-79%) |
| HP:0002007 | Frontal bossing | Frequent (30-79%) |
| HP:0002205 | Recurrent respiratory infections | Frequent (30-79%) |
| HP:0002650 | Scoliosis | Frequent (30-79%) |
| HP:0002673 | Coxa valga | Frequent (30-79%) |
| HP:0002827 | Hip dislocation | Frequent (30-79%) |
| HP:0002879 | Anisospondyly | Frequent (30-79%) |
| HP:0003172 | Abnormality of the pubic bone | Frequent (30-79%) |
| HP:0004493 | Craniofacial hyperostosis | Frequent (30-79%) |
| HP:0009771 | Osteolytic defects of the phalanges of the hand | Frequent (30-79%) |
| HP:0009882 | Short distal phalanx of finger | Frequent (30-79%) |
| HP:0010230 | Cone-shaped epiphyses of the phalanges of the hand | Frequent (30-79%) |
| HP:0001539 | Omphalocele | Occasional (5-29%) |
| HP:0002093 | Respiratory insufficiency | Occasional (5-29%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | Melnick-Needles syndrome |
| Mondo ID | MONDO:0010650 |
| OMIM | 309350 |
| Orphanet | 2484 |
| DOID | DOID:0111788 |
| SNOMED CT | 13449007 |
| UMLS | C0025237 |
| MedGen | 6292 |
| GARD | 0007011 |
| MedDRA | 10060908 |
| NORD | 1430 |
| Is cancer (heuristic) | no |
Also known as: Melnick Needles Syndrome · Melnick-Needles osteodysplasty · Melnick-Needles syndrome · Melnick-Needles syndrome, X-linked dominant · MNS
Data availability: 3,166 ClinVar variants · 3 GenCC gene-disease records.
Disease family
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › skeletal dysplasia › filamin-related bone disorder › otopalatodigital syndrome spectrum disorder › Melnick-Needles syndrome
Related subtypes (2): frontometaphyseal dysplasia, otopalatodigital syndrome
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
600 retrieved; paginated sample, class counts are floors:
200 likely benign, 199 uncertain significance, 108 conflicting classifications of pathogenicity, 35 benign, 26 pathogenic, 21 benign/likely benign, 7 pathogenic/likely pathogenic, 4 likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1455467 | NC_000023.10:g.(?153599231)(153609567_?)del | EMD | Pathogenic | criteria provided, single submitter |
| 1066948 | NM_001110556.2(FLNA):c.1066-1G>A | FLNA | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1069630 | NM_001110556.2(FLNA):c.334_335insGAGAACGTGTCGG (p.Glu112fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1070215 | NM_001110556.2(FLNA):c.812del (p.Pro271fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1070361 | NM_001110556.2(FLNA):c.2947dup (p.Val983fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1071106 | NM_001110556.2(FLNA):c.6677dup (p.Gln2227fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1071650 | NM_001110556.2(FLNA):c.829_835del (p.Arg276_Pro277insTer) | FLNA | Pathogenic | criteria provided, single submitter |
| 1072111 | NM_001110556.2(FLNA):c.577C>T (p.Gln193Ter) | FLNA | Pathogenic | criteria provided, single submitter |
| 1072754 | NM_001110556.2(FLNA):c.6329_6330del (p.Glu2110fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1073243 | NM_001110556.2(FLNA):c.5146del (p.Gln1716fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1075551 | NM_001110556.2(FLNA):c.2965C>T (p.Gln989Ter) | FLNA | Pathogenic | criteria provided, single submitter |
| 1075693 | NM_001110556.2(FLNA):c.4138dup (p.Thr1380fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 11754 | NM_001110556.2(FLNA):c.245A>T (p.Glu82Val) | FLNA | Pathogenic | criteria provided, single submitter |
| 11755 | NM_001110556.2(FLNA):c.620C>T (p.Pro207Leu) | FLNA | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 11756 | NM_001110556.2(FLNA):c.760G>A (p.Glu254Lys) | FLNA | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 11758 | NM_001110556.2(FLNA):c.3562G>A (p.Ala1188Thr) | FLNA | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 11759 | NM_001110556.2(FLNA):c.3596C>T (p.Ser1199Leu) | FLNA | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 11761 | NM_001110556.2(FLNA):c.3557C>T (p.Ser1186Leu) | FLNA | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 11775 | NM_001110556.2(FLNA):c.5217G>A (p.Thr1739=) | FLNA | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 11777 | NM_001110556.2(FLNA):c.862G>A (p.Gly288Arg) | FLNA | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1254666 | NM_001110556.2(FLNA):c.257AGA[2] (p.Lys88del) | FLNA | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1383677 | NM_001110556.2(FLNA):c.6318C>G (p.Tyr2106Ter) | FLNA | Pathogenic | criteria provided, single submitter |
| 1399735 | NM_001110556.2(FLNA):c.7285_7286dup (p.Gly2430fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1407335 | NM_001110556.2(FLNA):c.2191_2192insGT (p.Tyr731fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1429750 | NM_001110556.2(FLNA):c.1759G>T (p.Glu587Ter) | FLNA | Pathogenic | criteria provided, single submitter |
| 1434332 | NM_001110556.2(FLNA):c.2751_2752dup (p.Asp918fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1444364 | NM_001110556.2(FLNA):c.1112_1113dup (p.Val372fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1451173 | NM_001110556.2(FLNA):c.656del (p.Ser219fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1452088 | NM_001110556.2(FLNA):c.2963_2964del (p.Asp988fs) | FLNA | Pathogenic | criteria provided, single submitter |
| 1455761 | NM_001110556.2(FLNA):c.6898C>T (p.Gln2300Ter) | FLNA | Pathogenic | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 30 · Orphanet: 18 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| FLNA | Definitive | X-linked | Melnick-Needles syndrome | 30 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| FLNA | Orphanet:1826 | Frontometaphyseal dysplasia |
| FLNA | Orphanet:2301 | Congenital short bowel syndrome |
| FLNA | Orphanet:2484 | Melnick-Needles syndrome |
| FLNA | Orphanet:482606 | X-linked keloid scarring-reduced joint mobility-increased optic cup-to-disc ratio syndrome |
| FLNA | Orphanet:555877 | FLNA-related X-linked myxomatous valvular dysplasia |
| FLNA | Orphanet:75497 | X-linked Ehlers-Danlos syndrome |
| FLNA | Orphanet:88630 | Terminal osseous dysplasia-pigmentary defects syndrome |
| FLNA | Orphanet:90650 | Otopalatodigital syndrome type 1 |
| FLNA | Orphanet:90652 | Otopalatodigital syndrome type 2 |
| FLNA | Orphanet:98892 | Periventricular nodular heterotopia |
| FLNA | Orphanet:99811 | Neuronal intestinal pseudoobstruction |
| EMD | Orphanet:98863 | X-linked Emery-Dreifuss muscular dystrophy |
| HCFC1 | Orphanet:369962 | Methylmalonic acidemia with homocystinuria, type cblX |
| HCFC1 | Orphanet:777 | X-linked non-syndromic intellectual disability |
| ABCD1 | Orphanet:139396 | X-linked cerebral adrenoleukodystrophy |
| ABCD1 | Orphanet:139399 | Adrenomyeloneuropathy |
| ABCD1 | Orphanet:369942 | CADDS |
| ABCD1 | Orphanet:388 | Hirschsprung disease |
Cohort genes → proteins
7 cohort genes, 7 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 7 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| FLNA | HGNC:3754 | ENSG00000196924 | P21333 | Filamin-A | gencc,clinvar |
| OPN1MW2 | HGNC:26952 | ENSG00000166160 | P0DN77 | Medium-wave-sensitive opsin 2 | clinvar |
| DNASE1L1 | HGNC:2957 | ENSG00000013563 | P49184 | Deoxyribonuclease-1-like 1 | clinvar |
| EMD | HGNC:3331 | ENSG00000102119 | P50402 | Emerin | clinvar |
| HCFC1 | HGNC:4839 | ENSG00000172534 | P51610 | Host cell factor 1 | clinvar |
| ABCD1 | HGNC:61 | ENSG00000101986 | P33897 | ATP-binding cassette sub-family D member 1 | clinvar |
| ARHGAP4 | HGNC:674 | ENSG00000089820 | P98171 | Rho GTPase-activating protein 4 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| FLNA | Filamin-A | Promotes orthogonal branching of actin filaments and links actin filaments to membrane glycoproteins. |
| OPN1MW2 | Medium-wave-sensitive opsin 2 | Visual pigments are the light-absorbing molecules that mediate vision. |
| EMD | Emerin | Stabilizes and promotes the formation of a nuclear actin cortical network. |
| HCFC1 | Host cell factor 1 | Transcriptional coregulator. |
| ABCD1 | ATP-binding cassette sub-family D member 1 | ATP-dependent transporter of the ATP-binding cassette (ABC) family involved in the transport of very long chain fatty acid (VLCFA)-CoA from the cytosol to the peroxisome lumen. |
| ARHGAP4 | Rho GTPase-activating protein 4 | Inhibitory effect on stress fiber organization. |
Protein-family classification
Druggable: 5 · Difficult: 1 · Unknown: 1 · Druggable fraction: 0.71
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Antibody/Immunoglobulin | 2 | 8.3× | 0.132 |
| Phosphatase | 1 | 12.0× | 0.173 |
| Transporter | 1 | 11.1× | 0.173 |
| GPCR | 1 | 3.4× | 0.387 |
| Scaffold/PPI | 1 | 2.5× | 0.409 |
| Other/Unknown | 1 | 0.3× | 0.997 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| FLNA | Antibody/Immunoglobulin | yes | Filamin/ABP280_rpt, Actinin_actin-bd_CS, CH_dom | |
| OPN1MW2 | GPCR | yes | GPCR_Rhodpsn, Opsin_red/grn, Opsin | |
| DNASE1L1 | Phosphatase | yes | Endo/exonuclease/phosphatase, DNase_I, Deoxyribonuclease-1_AS | |
| EMD | Other/Unknown | no | LEM_dom, LEM/LEM-like_dom_sf, LEM_emerin | |
| HCFC1 | Antibody/Immunoglobulin | yes | FN3_dom, Ig-like_fold, Kelch-typ_b-propeller | |
| ABCD1 | Transporter | yes | 7.6.2.4 | ABC_transporter-like_ATP-bd, AAA+_ATPase, FA_transporter |
| ARHGAP4 | Scaffold/PPI | no | RhoGAP_dom, FCH_dom, SH3_domain |
Expression context
Cohort genes with no expression data: 0.
6 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 1 |
| moderate (6-20) | 0 |
| broad (>20) | 6 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| popliteal artery | 2 |
| right coronary artery | 1 |
| tibial artery | 1 |
| colonic epithelium | 1 |
| primordial germ cell in gonad | 1 |
| ventricular zone | 1 |
| gastrocnemius | 1 |
| gluteal muscle | 1 |
| hindlimb stylopod muscle | 1 |
| left ovary | 1 |
| left uterine tube | 1 |
| parotid gland | 1 |
| skeletal muscle tissue of rectus abdominis | 1 |
| tendon of biceps brachii | 1 |
| ileal mucosa | 1 |
| left adrenal gland | 1 |
| left adrenal gland cortex | 1 |
| granulocyte | 1 |
| monocyte | 1 |
| spleen | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| FLNA | 285 | ubiquitous | marker | right coronary artery, popliteal artery, tibial artery |
| OPN1MW2 | 4 | yes | primordial germ cell in gonad, colonic epithelium, ventricular zone | |
| DNASE1L1 | 283 | ubiquitous | marker | hindlimb stylopod muscle, gastrocnemius, gluteal muscle |
| EMD | 284 | ubiquitous | marker | left ovary, left uterine tube, popliteal artery |
| HCFC1 | 274 | ubiquitous | marker | tendon of biceps brachii, parotid gland, skeletal muscle tissue of rectus abdominis |
| ABCD1 | 201 | ubiquitous | marker | ileal mucosa, left adrenal gland cortex, left adrenal gland |
| ARHGAP4 | 229 | broad | marker | granulocyte, spleen, monocyte |
Protein interactions among cohort
Intra-cohort edges: 0.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| FLNA | 5,321 |
| EMD | 3,503 |
| HCFC1 | 2,637 |
| ABCD1 | 1,181 |
| ARHGAP4 | 1,088 |
| DNASE1L1 | 1,012 |
| OPN1MW2 | 346 |
Structural data
PDB: 5 · AlphaFold-only: 2 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| FLNA | P21333 | 26 |
| ABCD1 | P33897 | 14 |
| HCFC1 | P51610 | 11 |
| EMD | P50402 | 6 |
| ARHGAP4 | P98171 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| DNASE1L1 | P49184 | 90.83 |
| OPN1MW2 | P0DN77 | 82.82 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 38. Enrichment computed across 7 evidence-associated genes (6 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 6 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Defective ABCD1 causes ALD | 1 | 951.7× | 0.029 | ABCD1 |
| alpha-linolenic (omega3) and linoleic (omega6) acid metabolism | 1 | 317.2× | 0.029 | ABCD1 |
| OAS antiviral response | 1 | 211.5× | 0.029 | FLNA |
| Linoleic acid (LA) metabolism | 1 | 190.3× | 0.029 | ABCD1 |
| GP1b-IX-V activation signalling | 1 | 158.6× | 0.029 | FLNA |
| Beta-oxidation of very long chain fatty acids | 1 | 146.4× | 0.029 | ABCD1 |
| Depolymerization of the Nuclear Lamina | 1 | 126.9× | 0.029 | EMD |
| alpha-linolenic acid (ALA) metabolism | 1 | 119.0× | 0.029 | ABCD1 |
| Peroxisomal lipid metabolism | 1 | 112.0× | 0.029 | ABCD1 |
| Cell-extracellular matrix interactions | 1 | 112.0× | 0.029 | FLNA |
| ABC transporters in lipid homeostasis | 1 | 100.2× | 0.029 | ABCD1 |
| Initiation of Nuclear Envelope (NE) Reformation | 1 | 100.2× | 0.029 | EMD |
| RHO GTPases activate PAKs | 1 | 90.6× | 0.029 | FLNA |
| Class I peroxisomal membrane protein import | 1 | 86.5× | 0.029 | ABCD1 |
| Insertion of tail-anchored proteins into the endoplasmic reticulum membrane | 1 | 79.3× | 0.029 | EMD |
| Nuclear Envelope Breakdown | 1 | 76.1× | 0.029 | EMD |
| ABC transporter disorders | 1 | 73.2× | 0.029 | ABCD1 |
| RAC1 GTPase cycle | 2 | 20.4× | 0.029 | EMD, ARHGAP4 |
| Formation of WDR5-containing histone-modifying complexes | 1 | 44.3× | 0.045 | HCFC1 |
| Transcriptional activation of mitochondrial biogenesis | 1 | 34.0× | 0.053 | HCFC1 |
| RHOD GTPase cycle | 1 | 34.0× | 0.053 | EMD |
| Protein localization | 1 | 31.7× | 0.054 | ABCD1 |
| RHOG GTPase cycle | 1 | 24.7× | 0.065 | EMD |
| Disorders of transmembrane transporters | 1 | 23.2× | 0.065 | ABCD1 |
| Fatty acid metabolism | 1 | 21.9× | 0.065 | ABCD1 |
| RAC2 GTPase cycle | 1 | 21.1× | 0.065 | EMD |
| UCH proteinases | 1 | 20.7× | 0.065 | HCFC1 |
| ABC-family protein mediated transport | 1 | 20.2× | 0.065 | ABCD1 |
| RAC3 GTPase cycle | 1 | 19.8× | 0.065 | EMD |
| Platelet degranulation | 1 | 14.6× | 0.084 | FLNA |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 7 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| regulation of membrane repolarization during atrial cardiac muscle cell action potential | 1 | 2407.4× | 0.013 | FLNA |
| regulation of membrane repolarization during cardiac muscle cell action potential | 1 | 2407.4× | 0.013 | FLNA |
| peroxisomal membrane transport | 1 | 1203.7× | 0.013 | ABCD1 |
| very long-chain fatty-acyl-CoA catabolic process | 1 | 1203.7× | 0.013 | ABCD1 |
| release from viral latency | 1 | 802.5× | 0.013 | HCFC1 |
| tubulin deacetylation | 1 | 802.5× | 0.013 | FLNA |
| positive regulation of unsaturated fatty acid biosynthetic process | 1 | 802.5× | 0.013 | ABCD1 |
| formation of radial glial scaffolds | 1 | 601.9× | 0.013 | FLNA |
| sterol homeostasis | 1 | 601.9× | 0.013 | ABCD1 |
| adenylate cyclase-inhibiting dopamine receptor signaling pathway | 1 | 481.5× | 0.013 | FLNA |
| long-chain fatty acid import into peroxisome | 1 | 481.5× | 0.013 | ABCD1 |
| establishment of Sertoli cell barrier | 1 | 481.5× | 0.013 | FLNA |
| absorption of visible light | 1 | 401.2× | 0.013 | OPN1MW2 |
| regulation of fatty acid beta-oxidation | 1 | 401.2× | 0.013 | ABCD1 |
| long-chain fatty acid catabolic process | 1 | 401.2× | 0.013 | ABCD1 |
| myelin maintenance | 1 | 401.2× | 0.013 | ABCD1 |
| regulation of mitochondrial depolarization | 1 | 401.2× | 0.013 | ABCD1 |
| protein localization to bicellular tight junction | 1 | 401.2× | 0.013 | FLNA |
| negative regulation of transcription by RNA polymerase I | 1 | 343.9× | 0.013 | FLNA |
| fatty acid elongation | 1 | 343.9× | 0.013 | ABCD1 |
| very long-chain fatty acid catabolic process | 1 | 343.9× | 0.013 | ABCD1 |
| nuclear membrane organization | 1 | 343.9× | 0.013 | EMD |
| blood coagulation, intrinsic pathway | 1 | 300.9× | 0.014 | FLNA |
| negative regulation of fibroblast migration | 1 | 218.9× | 0.017 | ARHGAP4 |
| positive regulation of fatty acid beta-oxidation | 1 | 218.9× | 0.017 | ABCD1 |
| fatty acid derivative biosynthetic process | 1 | 218.9× | 0.017 | ABCD1 |
| protein stabilization | 2 | 19.1× | 0.017 | FLNA, HCFC1 |
| positive regulation of platelet activation | 1 | 185.2× | 0.018 | FLNA |
| regulation of cellular response to oxidative stress | 1 | 185.2× | 0.018 | ABCD1 |
| positive regulation of integrin-mediated signaling pathway | 1 | 185.2× | 0.018 | FLNA |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 2 · Undrugged: 5
Druggability breadth: 3 of 7 evidence-associated genes (43%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| FLNA | 1 | 2 |
| HCFC1 | 1 | 2 |
| OPN1MW2 | 0 | 0 |
| DNASE1L1 | 0 | 0 |
| EMD | 0 | 0 |
| ABCD1 | 0 | 0 |
| ARHGAP4 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| MOLIBRESIB | 2 | FLNA, HCFC1 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 1.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| HCFC1 | 8 | Binding:8 |
| FLNA | 7 | Binding:7 |
| EMD | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| ABCD1 | 7.6.2.4 | ABC-type fatty-acyl-CoA transporter |
Pharmacogenomics
Cohort genes with a PharmGKB record: 7; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
1 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| MOLIBRESIB | 2 | FLNA, HCFC1 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 2 | FLNA, HCFC1 |
| C | Druggable family + PDB, no drug | 1 | ABCD1 |
| D | Druggable family + AlphaFold only, no drug | 2 | OPN1MW2, DNASE1L1 |
| E | Difficult family or no structure, no drug | 2 | EMD, ARHGAP4 |
Undrugged target profiles
5 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| OPN1MW2 | 0 | — |
| DNASE1L1 | 0 | — |
| EMD | 1 | — |
| ABCD1 | 0 | — |
| ARHGAP4 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.