Mental disorder
disease diseaseOn this page
Also known as disorder of mental processmental or behavioral disordermental or behavioural disordermental process disease
Summary
Mental disorder (MONDO:0005084) is a disease (an umbrella term covering 14 Mondo subtypes) with 40 cohort genes (223 GWAS associations across 91 studies) and 493 clinical trials. Top therapeutic interventions include brexpiprazole, fluoxetine, and paroxetine.
At a glance
- Umbrella term: 14 Mondo subtypes
- Cohort genes: 40
- GWAS associations: 223
- ClinVar variants: 3
- Clinical trials: 493
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | mental disorder |
| Mondo ID | MONDO:0005084 |
| EFO | EFO:0000677 |
| SNOMED CT | 74732009 |
| UMLS | C0004936 |
| MedGen | 14047 |
| Is cancer (heuristic) | no |
Also known as: disorder of mental process · mental or behavioral disorder · mental or behavioural disorder · mental process disease
Data availability: 3 ClinVar variants · 223 GWAS associations (91 studies).
Disease family
An umbrella term covering 14 Mondo subtypes.
Classification path: disease › human disease › disease by developmental or physiological process › psychiatric disorder › mental disorder
Related subtypes (13): sexual disorder, dissociative disorder, impulse control disorder, personality disorder, cognitive disorder, factitious disorder, substance-related disorder, somatoform disorder, eating disorder, enuresis, Alice in Wonderland syndrome, catatonia, body integrity dysphoria
Subtypes (14): akinetopsia, cortical deafness, pain agnosia, tactile agnosia, visual agnosia, psychosexual disorder, drug-induced mental disorder, alcohol-induced mental disorder, adjustment disorder, mood disorder, psychotic disorder, developmental disorder of mental health, anxiety disorder, disruptive behavior disorder
Genetics & variants
GWAS landscape
223 GWAS associations across 91 studies. Top hits map to 17 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs429358 | 2e-56 | APOE | T | 0.23 |
| chr9:133616083 | 2e-18 | A | 0.1 | |
| rs530915272 | 3e-16 | MCM3AP, MCM3AP-AS1 | G | 4.38 |
| chr20:32434638 | 7e-15 | AG | 0.99 | |
| chr7:114559888 | 2e-13 | A | 0.06 | |
| rs528608991 | 4e-13 | LINC02379 - H3P15 | C | 2.79 |
| rs555304890 | 8e-13 | DUSP23 - FCRL6 | T | 2.25 |
| rs551486755 | 9e-13 | BSNDP4 - RNU6-417P | C | 3.99 |
| rs528204842 | 1e-12 | RP1L1 | G | 3.36 |
| rs545467829 | 3e-12 | CPD | A | 3.55 |
| rs183791137 | 6e-12 | AKR1C3 - AKR1C5P | C | 3.91 |
| rs141847690 | 7e-12 | CDH4 | G | 2.02 |
| rs563884503 | 7e-12 | LINC02488 - TMEM161B | G | 3.84 |
| rs12580615 | 9e-12 | ANKS1B | G | 3.21 |
| rs188277002 | 1e-11 | SHE | T | 2.78 |
| chr11:28602326 | 1e-11 | T | 0.05 | |
| rs529494389 | 2e-11 | ABCC4 | G | 3.81 |
| rs368327902 | 2e-11 | CLIC5 | G | 2.9 |
| rs185458001 | 2e-11 | OR7K1P - LINC02306 | C | 3.02 |
| chr2:44927279 | 2e-11 | C | 0.05 | |
| rs555187562 | 3e-11 | NDUFV3 | C | 3.75 |
| rs184664617 | 3e-11 | MIR5696 - CREG2 | G | 2.67 |
| rs148179018 | 3e-11 | CBR4-DT - SH3RF1 | G | 3.18 |
| chr15:78631503 | 3e-11 | G | 0.05 | |
| rs537425976 | 4e-11 | LINC02006 | A | 2.59 |
| rs143634281 | 4e-11 | LINC01717 - LINC01774 | A | 4.23 |
| rs565838897 | 4e-11 | MAPK10 | A | 2.46 |
| chr2:417167 | 1e-10 | C | 0.1 | |
| rs7118422 | 3e-10 | STIM1 | T | 1.17 |
| chr2:44954195 | 9e-10 | C | 0.05 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST90042861 | Jiang L | 2021 | 156,442 | 296,621 | A generalized linear mixed model association tool for biobank-scale data. |
| GCST90042802 | Jiang L | 2021 | 57,861 | 89,409 | A generalized linear mixed model association tool for biobank-scale data. |
| GCST90102280 | Meng P | 2022 | 56,863 | 319,943 | Associations between genetic loci, environment factors and mental disorders: a genome-wide survival analysis using the UK Biobank data. |
| GCST90042862 | Jiang L | 2021 | 52,417 | 401,764 | A generalized linear mixed model association tool for biobank-scale data. |
| GCST90473248 | UK Biobank Whole-Genome Sequencing Consortium | 2025 | 50,715 | 407,725 | Whole-genome sequencing of 490,640 UK Biobank participants. |
| GCST90042804 | Jiang L | 2021 | 48,729 | 97,076 | A generalized linear mixed model association tool for biobank-scale data. |
| GCST007777 | Schork AJ | 2019 | 46,008 | 19,526 | A genome-wide association study of shared risk across psychiatric disorders implicates gene regulation during fetal neurodevelopment. |
| GCST011006 | Liu X | 2020 | 43,902 | 19,790 | Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study. |
| GCST011007 | Liu X | 2020 | 42,866 | 19,790 | Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study. |
| GCST90473255 | UK Biobank Whole-Genome Sequencing Consortium | 2025 | 41,745 | 416,695 | Whole-genome sequencing of 490,640 UK Biobank participants. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 2 |
| Tier 2: splice/UTR | 0 |
| Tier 3: regulatory | 0 |
| Tier 4: intronic/intergenic | 48 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 5 |
| low_freq (0.01-0.05) | 0 |
| rare (<0.01) | 20 |
| unknown | 25 |
Functional consequences
| Consequence | Count |
|---|---|
| unknown | 23 |
| intron_variant | 16 |
| intergenic_variant | 9 |
| missense_variant | 2 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| chr19:44908684 | Tier 4: intronic/intergenic | |||||||
| rs429358 | 19 | 44908684 | T>C | 0.14 | missense_variant | APOE | 2e-56 | Tier 1: coding |
| chr9:133616083 | 2e-18 | Tier 4: intronic/intergenic | ||||||
| rs530915272 | 21 | 46259184 | G>A | 0 | intron_variant | MCM3AP, MCM3AP-AS1 | 3e-16 | Tier 4: intronic/intergenic |
| chr20:32434638 | 7e-15 | Tier 4: intronic/intergenic | ||||||
| chr7:114559888 | 2e-13 | Tier 4: intronic/intergenic | ||||||
| rs528608991 | 4 | 126106138 | C>T | 0.001 | intergenic_variant | LINC02379 - H3P15 | 4e-13 | Tier 4: intronic/intergenic |
| rs555304890 | 1 | 159782750 | T>C | 0.001 | intergenic_variant | DUSP23 - FCRL6 | 8e-13 | Tier 4: intronic/intergenic |
| rs551486755 | 7 | 62803110 | C>G,T | 0 | intergenic_variant | BSNDP4 - RNU6-417P | 9e-13 | Tier 4: intronic/intergenic |
| rs528204842 | 8 | 10625943 | G>A,T | 0.001 | intron_variant | RP1L1 | 1e-12 | Tier 4: intronic/intergenic |
| rs545467829 | 17 | 30388536 | A>G | 0.001 | intron_variant | CPD | 3e-12 | Tier 4: intronic/intergenic |
| rs183791137 | 10 | 5107966 | C>G,T | 0.001 | intergenic_variant | AKR1C3 - AKR1C5P | 6e-12 | Tier 4: intronic/intergenic |
| rs141847690 | 20 | 61659755 | G>C,T | 0.002 | intron_variant | CDH4 | 7e-12 | Tier 4: intronic/intergenic |
| rs563884503 | 5 | 87920587 | G>A,T | 0.001 | intron_variant | LINC02488 - TMEM161B | 7e-12 | Tier 4: intronic/intergenic |
| rs12580615 | 12 | 99359379 | G>A,C | 0 | intron_variant | ANKS1B | 9e-12 | Tier 4: intronic/intergenic |
| rs188277002 | 1 | 154499864 | T>C | 0.001 | intron_variant | SHE | 1e-11 | Tier 4: intronic/intergenic |
| chr11:28602326 | 1e-11 | Tier 4: intronic/intergenic | ||||||
| rs529494389 | 13 | 95293261 | G>A | 0 | intron_variant | ABCC4 | 2e-11 | Tier 4: intronic/intergenic |
| rs368327902 | 6 | 46069142 | G>T | 0.001 | intergenic_variant | CLIC5 | 2e-11 | Tier 4: intronic/intergenic |
| rs185458001 | 14 | 25439545 | C>T | 0 | intergenic_variant | OR7K1P - LINC02306 | 2e-11 | Tier 4: intronic/intergenic |
| chr2:44927279 | 2e-11 | Tier 4: intronic/intergenic | ||||||
| rs555187562 | 21 | 42908262 | C>T | 0 | intron_variant | NDUFV3 | 3e-11 | Tier 4: intronic/intergenic |
| rs184664617 | 2 | 101330038 | G>A,T | 0.001 | intron_variant | MIR5696 - CREG2 | 3e-11 | Tier 4: intronic/intergenic |
| rs148179018 | 4 | 169076107 | G>A | 0.001 | intergenic_variant | CBR4-DT - SH3RF1 | 3e-11 | Tier 4: intronic/intergenic |
| chr15:78631503 | 3e-11 | Tier 4: intronic/intergenic | ||||||
| rs537425976 | 3 | 153931143 | A>G | 0 | intron_variant | LINC02006 | 4e-11 | Tier 4: intronic/intergenic |
| rs143634281 | 1 | 208906269 | A>G | 0 | intergenic_variant | LINC01717 - LINC01774 | 4e-11 | Tier 4: intronic/intergenic |
| rs565838897 | 4 | 86323209 | A>G,T | 0 | intron_variant | MAPK10 | 4e-11 | Tier 4: intronic/intergenic |
| chr2:417167 | 1e-10 | Tier 4: intronic/intergenic | ||||||
| rs7118422 | 11 | 3912065 | T>C | 0.49 | intron_variant | STIM1 | 3e-10 | Tier 4: intronic/intergenic |
ClinVar germline variants
3 retrieved; paginated sample, class counts are floors:
2 uncertain significance, 1 likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 3062000 | NM_001379291.1(BRD4):c.703C>T (p.Gln235Ter) | BRD4 | Likely pathogenic | criteria provided, single submitter |
| 217510 | NC_000002.10:g.[51151955_51190352del;51440969_51481281del] | Uncertain significance | no assertion criteria provided | |
| 2671883 | NM_001379291.1(BRD4):c.883A>C (p.Thr295Pro) | BRD4 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 19 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| STIM1 | Orphanet:2593 | Tubular aggregate myopathy |
| STIM1 | Orphanet:317430 | Combined immunodeficiency due to STIM1 deficiency |
| STIM1 | Orphanet:3204 | Stormorken-Sjaastad-Langslet syndrome |
| TRPS1 | Orphanet:502 | Trichorhinophalangeal syndrome type 2 |
| TRPS1 | Orphanet:77258 | Trichorhinophalangeal syndrome type 1 |
| BRD4 | Orphanet:199 | Cornelia de Lange syndrome |
| BRD4 | Orphanet:443167 | NUT midline carcinoma |
| CNTNAP2 | Orphanet:163681 | CNTNAP2-related developmental and epileptic encephalopathy |
| MYO18B | Orphanet:447974 | Klippel-Feil anomaly-myopathy-facial dysmorphism syndrome |
| RIN2 | Orphanet:217335 | RIN2 syndrome |
| NALCN | Orphanet:1146 | Distal arthrogryposis type 1 |
| NALCN | Orphanet:1147 | Sheldon-Hall syndrome |
| NALCN | Orphanet:2053 | Freeman-Sheldon syndrome |
| NALCN | Orphanet:562528 | Congenital limbs-face contractures-hypotonia-developmental delay syndrome |
| NALCN | Orphanet:700336 | Hypotonia-speech impairment-severe cognitive delay syndrome due to NALCN deficiency |
| IFT88 | Orphanet:791 | Retinitis pigmentosa |
| PHF8 | Orphanet:85287 | X-linked intellectual disability, Siderius type |
| POMGNT2 | Orphanet:899 | Walker-Warburg syndrome |
| PTPRF | Orphanet:180188 | Isolated congenital breast hypoplasia/aplasia |
Cohort genes → proteins
40 cohort genes, 39 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 39 |
| multi_evidence | 1 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| STIM1 | HGNC:11386 | ENSG00000167323 | Q13586 | Stromal interaction molecule 1 | gwas |
| TRPS1 | HGNC:12340 | ENSG00000104447 | Q9UHF7 | Zinc finger transcription factor Trps1 | gwas |
| BRD4 | HGNC:13575 | ENSG00000141867 | O60885 | Bromodomain-containing protein 4 | clinvar |
| CNTNAP2 | HGNC:13830 | ENSG00000174469 | Q9UHC6 | Contactin-associated protein-like 2 | gwas |
| CACNG5 | HGNC:1409 | ENSG00000075429 | Q9UF02 | Voltage-dependent calcium channel gamma-5 subunit | gwas |
| SORBS1 | HGNC:14565 | ENSG00000095637 | Q9BX66 | Sorbin and SH3 domain-containing protein 1 | gwas |
| SHC4 | HGNC:16743 | ENSG00000185634 | Q6S5L8 | SHC-transforming protein 4 | gwas |
| SEMA6D | HGNC:16770 | ENSG00000137872 | Q8NFY4 | Semaphorin-6D | gwas |
| ASTN2 | HGNC:17021 | ENSG00000148219 | O75129 | Astrotactin-2 | gwas |
| MYO18B | HGNC:18150 | ENSG00000133454 | Q8IUG5 | Unconventional myosin-XVIIIb | gwas |
| RIN2 | HGNC:18750 | ENSG00000132669 | Q8WYP3 | Ras and Rab interactor 2 | gwas |
| NALCN | HGNC:19082 | ENSG00000102452 | Q8IZF0 | Sodium leak channel NALCN | gwas |
| NPAS3 | HGNC:19311 | ENSG00000151322 | Q8IXF0 | Neuronal PAS domain-containing protein 3 | gwas |
| RUFY1 | HGNC:19760 | ENSG00000176783 | Q96T51 | RUN and FYVE domain-containing protein 1 | gwas |
| CCNL1 | HGNC:20569 | ENSG00000163660 | Q9UK58 | Cyclin-L1 | gwas |
| IFT88 | HGNC:20606 | ENSG00000032742 | Q13099 | Intraflagellar transport protein 88 homolog | gwas |
| PDLIM1 | HGNC:2067 | ENSG00000107438 | O00151 | PDZ and LIM domain protein 1 | gwas |
| PHF8 | HGNC:20672 | ENSG00000172943 | Q9UPP1 | Histone lysine demethylase PHF8 | gwas |
| DAOA | HGNC:21191 | ENSG00000182346 | P59103 | D-amino acid oxidase regulator | gwas |
| CNTN5 | HGNC:2175 | ENSG00000149972 | O94779 | Contactin-5 | gwas |
| CYCSP44 | HGNC:24418 | ENSG00000233548 | CYCS pseudogene 44 | gwas | |
| ADM | HGNC:259 | ENSG00000148926 | P35318 | Pro-adrenomedullin | gwas |
| POMGNT2 | HGNC:25902 | ENSG00000144647 | Q8NAT1 | Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 | gwas |
| LRRIQ3 | HGNC:28318 | ENSG00000162620 | A6PVS8 | Leucine-rich repeat and IQ domain-containing protein 3 | gwas |
| FAM110B | HGNC:28587 | ENSG00000169122 | Q8TC76 | Protein FAM110B | gwas |
| DLGAP1 | HGNC:2905 | ENSG00000170579 | O14490 | Disks large-associated protein 1 | gwas |
| NCKAP5 | HGNC:29847 | ENSG00000176771 | O14513 | Nck-associated protein 5 | gwas |
| ERC2 | HGNC:31922 | ENSG00000187672 | O15083 | ERC protein 2 | gwas |
| DIPK1A | HGNC:32213 | ENSG00000154511 | Q5T7M9 | Divergent protein kinase domain 1A | gwas |
| LEKR1 | HGNC:33765 | ENSG00000197980 | Q6ZMV7 | Protein LEKR1 | gwas |
| TMEM212 | HGNC:34295 | ENSG00000186329 | A6NML5 | Transmembrane protein 212 | gwas |
| GABRR1 | HGNC:4090 | ENSG00000146276 | P24046 | Gamma-aminobutyric acid receptor subunit rho-1 | gwas |
| ANXA1 | HGNC:533 | ENSG00000135046 | P04083 | Annexin A1 | gwas |
| IGSF5 | HGNC:5952 | ENSG00000183067 | Q9NSI5 | Immunoglobulin superfamily member 5 | gwas |
| MAD1L1 | HGNC:6762 | ENSG00000002822 | Q9Y6D9 | Mitotic spindle assembly checkpoint protein MAD1 | gwas |
| B3GALT5 | HGNC:920 | ENSG00000183778 | Q9Y2C3 | Beta-1,3-galactosyltransferase 5 | gwas |
| PRKCE | HGNC:9401 | ENSG00000171132 | Q02156 | Protein kinase C epsilon type | gwas |
| PTPRF | HGNC:9670 | ENSG00000142949 | P10586 | Receptor-type tyrosine-protein phosphatase F | gwas |
| PTPRN2 | HGNC:9677 | ENSG00000155093 | Q92932 | Receptor-type tyrosine-protein phosphatase N2 | gwas |
| PTPRU | HGNC:9683 | ENSG00000060656 | Q92729 | Receptor-type tyrosine-protein phosphatase U | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| STIM1 | Stromal interaction molecule 1 | Acts as a Ca(2+) sensor that gates two major inward rectifying Ca(2+) channels at the plasma membrane: Ca(2+) release-activated Ca(2+) (CRAC) channels and arachidonate-regulated Ca(2+)-selective (ARC) channels. |
| TRPS1 | Zinc finger transcription factor Trps1 | Transcriptional repressor. |
| BRD4 | Bromodomain-containing protein 4 | Chromatin reader protein that recognizes and binds acetylated histones and plays a key role in transmission of epigenetic memory across cell divisions and transcription regulation. |
| CNTNAP2 | Contactin-associated protein-like 2 | Required for gap junction formation. |
| CACNG5 | Voltage-dependent calcium channel gamma-5 subunit | Regulates the gating properties of AMPA-selective glutamate receptors (AMPARs). |
| SORBS1 | Sorbin and SH3 domain-containing protein 1 | Plays a role in tyrosine phosphorylation of CBL by linking CBL to the insulin receptor. |
| SHC4 | SHC-transforming protein 4 | Activates both Ras-dependent and Ras-independent migratory pathways in melanomas. |
| SEMA6D | Semaphorin-6D | Shows growth cone collapsing activity on dorsal root ganglion (DRG) neurons in vitro. |
| ASTN2 | Astrotactin-2 | Mediates recycling of the neuronal cell adhesion molecule ASTN1 to the anterior pole of the cell membrane in migrating neurons. |
| MYO18B | Unconventional myosin-XVIIIb | May be involved in intracellular trafficking of the muscle cell when in the cytoplasm, whereas entering the nucleus, may be involved in the regulation of muscle specific genes. |
| RIN2 | Ras and Rab interactor 2 | Ras effector protein. |
| NALCN | Sodium leak channel NALCN | Voltage-gated ion channel responsible for the resting Na(+) permeability that controls neuronal excitability. |
| NPAS3 | Neuronal PAS domain-containing protein 3 | May play a broad role in neurogenesis. |
| RUFY1 | RUN and FYVE domain-containing protein 1 | Activating adapter involved in cargo sorting from early/recycling endosomes. |
| CCNL1 | Cyclin-L1 | Regulatory component of the cyclin-L-CDK11 complex that regulates transcription and pre-mRNA splicing. |
| IFT88 | Intraflagellar transport protein 88 homolog | Positively regulates primary cilium biogenesis. |
| PDLIM1 | PDZ and LIM domain protein 1 | Cytoskeletal protein that may act as an adapter that brings other proteins (like kinases) to the cytoskeleton. |
| PHF8 | Histone lysine demethylase PHF8 | Histone lysine demethylase with selectivity for mono- and dimethylated residues. |
| DAOA | D-amino acid oxidase regulator | May suppress DAO (D-amino acid oxidase) and SOD1 activity and promote their degradation. |
| CNTN5 | Contactin-5 | Contactins mediate cell surface interactions during nervous system development. |
| ADM | Pro-adrenomedullin | Adrenomedullin/ADM and proadrenomedullin N-20 terminal peptide/PAMP are peptide hormones that act as potent hypotensive and vasodilatator agents. |
| POMGNT2 | Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 | O-linked mannose beta-1,4-N-acetylglucosaminyltransferase that transfers UDP-N-acetyl-D-glucosamine to the 4-position of the mannose to generate N-acetyl-D-glucosamine-beta-1,4-O-D-mannosylprotein. |
| FAM110B | Protein FAM110B | May be involved in tumor progression. |
| DLGAP1 | Disks large-associated protein 1 | Part of the postsynaptic scaffold in neuronal cells. |
| ERC2 | ERC protein 2 | Thought to be involved in the organization of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. |
| GABRR1 | Gamma-aminobutyric acid receptor subunit rho-1 | Rho subunit of the pentameric ligand-gated chloride channels responsible for mediating the effects of gamma-aminobutyric acid (GABA), the major inhibitory neurotransmitter in the brain. |
| ANXA1 | Annexin A1 | Plays important roles in the innate immune response as effector of glucocorticoid-mediated responses and regulator of the inflammatory process. |
| IGSF5 | Immunoglobulin superfamily member 5 | Provides, together with MAGI1, an adhesion machinery at tight junctions, which may regulate the permeability of kidney glomerulus and small intestinal epithelial cells. |
| MAD1L1 | Mitotic spindle assembly checkpoint protein MAD1 | Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. |
| B3GALT5 | Beta-1,3-galactosyltransferase 5 | Catalyzes the transfer of Gal to GlcNAc-based acceptors with a preference for the core3 O-linked glycan GlcNAc(beta1,3)GalNAc structure. |
| PRKCE | Protein kinase C epsilon type | Calcium-independent, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase that plays essential roles in the regulation of multiple cellular processes linked to cytoskeletal proteins, such as cell adhesion, motil… |
| PTPRF | Receptor-type tyrosine-protein phosphatase F | Possible cell adhesion receptor. |
| PTPRN2 | Receptor-type tyrosine-protein phosphatase N2 | Plays a role in vesicle-mediated secretory processes. |
| PTPRU | Receptor-type tyrosine-protein phosphatase U | Tyrosine-protein phosphatase which dephosphorylates CTNNB1. |
Protein-family classification
Druggable: 10 · Difficult: 9 · Unknown: 21 · Druggable fraction: 0.25
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Phosphatase | 3 | 6.3× | 0.096 |
| Complement | 1 | 6.7× | 0.398 |
| Antibody/Immunoglobulin | 3 | 2.2× | 0.398 |
| Scaffold/PPI | 4 | 1.7× | 0.398 |
| Ion channel | 1 | 2.8× | 0.484 |
| Kinase | 2 | 1.4× | 0.568 |
| Transcription factor | 5 | 1.0× | 0.619 |
| Other/Unknown | 21 | 0.9× | 0.721 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| STIM1 | Other/Unknown | no | SAM, SAM/pointed_sf, SOAR_STIM1/2 | |
| TRPS1 | Transcription factor | no | Znf_GATA, Znf_C2H2_type, Znf_NHR/GATA | |
| BRD4 | Other/Unknown | no | Bromodomain, Bromodomain_CS, NET_dom | |
| CNTNAP2 | Other/Unknown | no | FA58C, EGF, Laminin_G | |
| CACNG5 | Other/Unknown | no | PMP22/EMP/MP20/Claudin, VDCC_gsu, VDCC_g5su | |
| SORBS1 | Scaffold/PPI | no | SH3_domain, SoHo_dom, SORBS1_SH3 | |
| SHC4 | Scaffold/PPI | no | SH2, PID_Shc-like, PTB/PI_dom | |
| SEMA6D | Scaffold/PPI | no | Semap_dom, Plexin_repeat, WD40/YVTN_repeat-like_dom_sf | |
| ASTN2 | Complement | yes | MACPF, Astrotactin, FN3_sf | |
| MYO18B | Other/Unknown | no | Myosin_head_motor_dom-like, P-loop_NTPase, MYSc_Myo18 | |
| RIN2 | Scaffold/PPI | no | RA_dom, SH2, VPS9 | |
| NALCN | Ion channel | yes | Ion_trans_dom, Volt_channel_dom_sf, NALCN | |
| NPAS3 | Transcription factor | no | PAS, bHLH_dom, PAS_fold_3 | |
| RUFY1 | Transcription factor | no | Znf_FYVE, Znf_RING, Run_dom | |
| CCNL1 | Other/Unknown | no | Cyclin_C-dom, Cyclin_N, Cyclin-like_dom | |
| IFT88 | Other/Unknown | no | Sel1-like, TPR-like_helical_dom_sf, TPR_rpt | |
| PDLIM1 | Transcription factor | no | PDZ, Znf_LIM, Zasp-like_motif | |
| PHF8 | Transcription factor | no | 1.14.11.65 | Znf_PHD, JmjC_dom, Znf_FYVE_PHD |
| DAOA | Other/Unknown | no | DAOA | |
| CNTN5 | Antibody/Immunoglobulin | yes | Ig_sub2, Ig_sub, FN3_dom | |
| CYCSP44 | Other/Unknown | no | ||
| ADM | Other/Unknown | no | Pro-ADM, Calcitonin/adrenomedullin, Adrenomedullin-reg_peptide | |
| POMGNT2 | Antibody/Immunoglobulin | yes | 2.4.1.312 | FN3_dom, Glycosyltransferase_61, Ig-like_fold |
| LRRIQ3 | Other/Unknown | no | Leu-rich_rpt, LRR_dom_sf, LRR-IQ_domain_protein | |
| FAM110B | Other/Unknown | no | FAM110_N, FAM110, FAM110_C | |
| DLGAP1 | Other/Unknown | no | SAPAP | |
| NCKAP5 | Other/Unknown | no | Nckap5l, NCKAP5_C | |
| ERC2 | Other/Unknown | no | ELKS/CAST | |
| DIPK1A | Kinase | yes | FAM69_kinase_dom, FAM69_N | |
| LEKR1 | Other/Unknown | no | LEKR1 | |
| TMEM212 | Other/Unknown | no | ||
| GABRR1 | Other/Unknown | no | GABAA/Glycine_rcpt, Neurotrans-gated_channel_TM, Neur_channel | |
| ANXA1 | Other/Unknown | no | Annexin, ANX1, Annexin_repeat_CS | |
| IGSF5 | Antibody/Immunoglobulin | yes | Ig_sub, Ig-like_dom, Ig_I-set | |
| MAD1L1 | Other/Unknown | no | Mad1 | |
| B3GALT5 | Other/Unknown | no | Glyco_trans_31 | |
| PRKCE | Kinase | yes | 2.7.11.13 | C2_dom, Prot_kinase_dom, AGC-kinase_C |
| PTPRF | Phosphatase | yes | 3.1.3.48 | PTP_cat, Tyr_Pase_dom, Tyr_Pase_cat |
| PTPRN2 | Phosphatase | yes | 3.1.3.48 | PTP_cat, Tyr_Pase_dom, Tyr_Pase_cat |
| PTPRU | Phosphatase | yes | 3.1.3.48 | PTP_cat, Tyr_Pase_dom, MAM_dom |
Expression context
Cohort genes with no expression data: 0.
36 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 1 |
| moderate (6-20) | 1 |
| broad (>20) | 38 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| buccal mucosa cell | 7 |
| middle temporal gyrus | 5 |
| male germ line stem cell (sensu Vertebrata) in testis | 5 |
| sural nerve | 4 |
| corpus callosum | 4 |
| primordial germ cell in gonad | 4 |
| Brodmann (1909) area 23 | 4 |
| endothelial cell | 4 |
| bronchial epithelial cell | 3 |
| left testis | 3 |
| right testis | 3 |
| lateral nuclear group of thalamus | 3 |
| gastrocnemius | 2 |
| hindlimb stylopod muscle | 2 |
| calcaneal tendon | 2 |
| tendon of biceps brachii | 2 |
| left ventricle myocardium | 2 |
| dorsal root ganglion | 2 |
| trigeminal ganglion | 2 |
| jejunal mucosa | 2 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| STIM1 | 237 | ubiquitous | marker | gastrocnemius, muscle of leg, hindlimb stylopod muscle |
| TRPS1 | 284 | ubiquitous | marker | mammary duct, epithelium of mammary gland, calcaneal tendon |
| BRD4 | 300 | ubiquitous | marker | buccal mucosa cell, sural nerve, tendon of biceps brachii |
| CNTNAP2 | 127 | broad | marker | corpus callosum, superior frontal gyrus, C1 segment of cervical spinal cord |
| CACNG5 | 46 | tissue_specific | yes | primordial germ cell in gonad, anterior cingulate cortex, Brodmann (1909) area 9 |
| SORBS1 | 287 | ubiquitous | marker | blood vessel layer, saphenous vein, left ventricle myocardium |
| SHC4 | 191 | broad | yes | buccal mucosa cell, trigeminal ganglion, dorsal root ganglion |
| SEMA6D | 251 | broad | marker | jejunal mucosa, substantia nigra pars reticulata, substantia nigra pars compacta |
| ASTN2 | 236 | ubiquitous | marker | buccal mucosa cell, trigeminal ganglion, dorsal root ganglion |
| MYO18B | 148 | broad | marker | apex of heart, gastrocnemius, hindlimb stylopod muscle |
| RIN2 | 296 | ubiquitous | marker | choroid plexus epithelium, tendon of biceps brachii, hair follicle |
| NALCN | 201 | ubiquitous | marker | middle temporal gyrus, Brodmann (1909) area 23, corpus callosum |
| NPAS3 | 215 | broad | marker | endothelial cell, ventricular zone, corpus callosum |
| RUFY1 | 134 | ubiquitous | marker | monocyte, leukocyte, calcaneal tendon |
| CCNL1 | 293 | ubiquitous | marker | mucosa of stomach, granulocyte, left uterine tube |
| IFT88 | 284 | ubiquitous | marker | bronchial epithelial cell, sperm, epithelium of bronchus |
| PDLIM1 | 283 | ubiquitous | marker | lower lobe of lung, nasal cavity epithelium, mucosa of urinary bladder |
| PHF8 | 251 | ubiquitous | marker | right testis, sural nerve, left testis |
| DAOA | 1 | marker | endothelial cell, upper leg skin, lower lobe of lung | |
| CNTN5 | 130 | broad | marker | adrenal tissue, primordial germ cell in gonad, islet of Langerhans |
| CYCSP44 | 11 | yes | male germ line stem cell (sensu Vertebrata) in testis, buccal mucosa cell, triceps brachii | |
| ADM | 288 | ubiquitous | marker | vena cava, type B pancreatic cell, pericardium |
| POMGNT2 | 245 | ubiquitous | marker | lateral nuclear group of thalamus, right hemisphere of cerebellum, cardiac muscle of right atrium |
| LRRIQ3 | 165 | broad | yes | male germ line stem cell (sensu Vertebrata) in testis, left testis, right testis |
| FAM110B | 238 | ubiquitous | marker | cortical plate, cartilage tissue, middle temporal gyrus |
| DLGAP1 | 214 | broad | marker | Brodmann (1909) area 23, endothelial cell, primary visual cortex |
| NCKAP5 | 132 | broad | marker | corpus callosum, cerebellar vermis, ventricular zone |
| ERC2 | 195 | broad | marker | middle temporal gyrus, Brodmann (1909) area 23, orbitofrontal cortex |
| DIPK1A | 275 | ubiquitous | marker | endothelial cell, Brodmann (1909) area 23, middle temporal gyrus |
| LEKR1 | 165 | ubiquitous | marker | buccal mucosa cell, male germ line stem cell (sensu Vertebrata) in testis, right uterine tube |
Protein interactions among cohort
Intra-cohort edges: 3.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| BRD4 | 7,883 |
| ANXA1 | 4,269 |
| IFT88 | 3,166 |
| STIM1 | 3,074 |
| MAD1L1 | 2,947 |
| TRPS1 | 2,588 |
| PHF8 | 2,579 |
| PTPRF | 2,473 |
| PRKCE | 2,158 |
| CNTNAP2 | 2,097 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| CCNL1 | LEKR1 | string_interaction |
| CNTN5 | CNTNAP2 | string_interaction |
| PTPRN2 | STIM1 | biogrid_interaction |
Structural data
PDB: 21 · AlphaFold-only: 18 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| BRD4 | O60885 | 619 |
| GABRR1 | P24046 | 26 |
| PTPRF | P10586 | 13 |
| SORBS1 | Q9BX66 | 11 |
| ADM | P35318 | 8 |
| B3GALT5 | Q9Y2C3 | 8 |
| STIM1 | Q13586 | 6 |
| PHF8 | Q9UPP1 | 6 |
| NALCN | Q8IZF0 | 5 |
| ANXA1 | P04083 | 5 |
| MAD1L1 | Q9Y6D9 | 5 |
| ASTN2 | O75129 | 3 |
| POMGNT2 | Q8NAT1 | 3 |
| DLGAP1 | O14490 | 3 |
| PTPRN2 | Q92932 | 3 |
| RUFY1 | Q96T51 | 2 |
| PDLIM1 | O00151 | 2 |
| CNTN5 | O94779 | 2 |
| PRKCE | Q02156 | 2 |
| PTPRU | Q92729 | 2 |
| CNTNAP2 | Q9UHC6 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| LEKR1 | Q6ZMV7 | 92.75 |
| DIPK1A | Q5T7M9 | 83.20 |
| IFT88 | Q13099 | 77.20 |
| TMEM212 | A6NML5 | 74.31 |
| ERC2 | O15083 | 74.26 |
| CACNG5 | Q9UF02 | 72.86 |
| LRRIQ3 | A6PVS8 | 70.18 |
| CCNL1 | Q9UK58 | 68.90 |
| SEMA6D | Q8NFY4 | 67.95 |
| IGSF5 | Q9NSI5 | 66.04 |
| RIN2 | Q8WYP3 | 64.30 |
| MYO18B | Q8IUG5 | 60.66 |
| FAM110B | Q8TC76 | 59.48 |
| SHC4 | Q6S5L8 | 59.12 |
| NPAS3 | Q8IXF0 | 56.50 |
| TRPS1 | Q9UHF7 | 49.12 |
| DAOA | P59103 | 46.78 |
| NCKAP5 | O14513 | 43.93 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 99. Enrichment computed across 40 evidence-associated genes (21 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 21 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Smooth Muscle Contraction | 2 | 25.3× | 0.138 | SORBS1, ANXA1 |
| Muscle contraction | 3 | 11.0× | 0.138 | STIM1, SORBS1, ANXA1 |
| DAG1 core M3 glycosylations | 1 | 90.6× | 0.219 | POMGNT2 |
| Formyl peptide receptors bind formyl peptides and many other ligands | 1 | 68.0× | 0.219 | ANXA1 |
| Blood group systems biosynthesis | 1 | 54.4× | 0.219 | B3GALT5 |
| Calcitonin-like ligand receptors | 1 | 49.4× | 0.219 | ADM |
| Elevation of cytosolic Ca2+ levels | 1 | 34.0× | 0.219 | STIM1 |
| Platelet calcium homeostasis | 1 | 34.0× | 0.219 | STIM1 |
| Lewis blood group biosynthesis | 1 | 32.0× | 0.219 | B3GALT5 |
| Other semaphorin interactions | 1 | 28.6× | 0.219 | SEMA6D |
| Receptor-type tyrosine-protein phosphatases | 1 | 27.2× | 0.219 | PTPRF |
| Synaptic adhesion-like molecules | 1 | 25.9× | 0.219 | PTPRF |
| Chaperone Mediated Autophagy | 1 | 23.6× | 0.219 | IFT88 |
| SHC1 events in ERBB2 signaling | 1 | 22.7× | 0.219 | PRKCE |
| Effects of PIP2 hydrolysis | 1 | 21.8× | 0.219 | PRKCE |
| Role of phospholipids in phagocytosis | 1 | 21.8× | 0.219 | PRKCE |
| Semaphorin interactions | 1 | 18.8× | 0.219 | SEMA6D |
| Insulin receptor recycling | 1 | 18.1× | 0.219 | PTPRF |
| PI Metabolism | 1 | 17.0× | 0.219 | RUFY1 |
| Antigen activates B Cell Receptor (BCR) leading to generation of second messengers | 1 | 17.0× | 0.219 | STIM1 |
| Signaling by ERBB2 | 1 | 16.5× | 0.219 | PRKCE |
| Signaling by the B Cell Receptor (BCR) | 1 | 16.5× | 0.219 | STIM1 |
| Late endosomal microautophagy | 1 | 15.5× | 0.219 | IFT88 |
| DAG and IP3 signaling | 1 | 15.1× | 0.219 | PRKCE |
| GABA receptor activation | 1 | 15.1× | 0.219 | GABRR1 |
| GPCR downstream signalling | 3 | 6.2× | 0.219 | ADM, ANXA1, PRKCE |
| GPCR ligand binding | 2 | 6.1× | 0.219 | ADM, ANXA1 |
| Signaling by GPCR | 3 | 5.7× | 0.219 | ADM, ANXA1, PRKCE |
| G alpha (q) signalling events | 2 | 5.5× | 0.219 | ANXA1, PRKCE |
| Response of endothelial cells to shear stress | 1 | 14.3× | 0.223 | ADM |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 34 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| cell surface receptor protein tyrosine phosphatase signaling pathway | 2 | 123.9× | 0.028 | PTPRF, PTPRU |
| positive regulation of vasculogenesis | 2 | 76.2× | 0.038 | RIN2, ADM |
| toxin catabolic process | 1 | 495.6× | 0.038 | PRKCE |
| regulation of interleukin-1 production | 1 | 495.6× | 0.038 | ANXA1 |
| D-amino acid metabolic process | 1 | 495.6× | 0.038 | DAOA |
| negative regulation of receptor binding | 1 | 495.6× | 0.038 | PTPRF |
| positive regulation of progesterone biosynthetic process | 1 | 495.6× | 0.038 | ADM |
| positive regulation of synaptic transmission, GABAergic | 2 | 58.3× | 0.038 | NALCN, PRKCE |
| cell-substrate adhesion | 2 | 45.1× | 0.038 | SORBS1, PRKCE |
| stress fiber assembly | 2 | 45.1× | 0.038 | SORBS1, PDLIM1 |
| transmission of nerve impulse | 2 | 38.1× | 0.038 | CNTNAP2, CACNG5 |
| positive regulation of wound healing | 2 | 31.0× | 0.038 | ANXA1, PRKCE |
| protein localization to cell surface | 2 | 29.2× | 0.038 | ASTN2, PTPRU |
| synaptic transmission, GABAergic | 2 | 29.2× | 0.038 | GABRR1, PRKCE |
| limbic system development | 1 | 247.8× | 0.055 | CNTNAP2 |
| negative regulation of rDNA heterochromatin formation | 1 | 247.8× | 0.055 | PHF8 |
| superior temporal gyrus development | 1 | 247.8× | 0.055 | CNTNAP2 |
| regulation of leukocyte migration | 1 | 165.2× | 0.055 | ANXA1 |
| TRAM-dependent toll-like receptor 4 signaling pathway | 1 | 165.2× | 0.055 | PRKCE |
| regulation of calcium-dependent activation of synaptic vesicle fusion | 1 | 165.2× | 0.055 | ERC2 |
| deactivation of mitotic spindle assembly checkpoint | 1 | 165.2× | 0.055 | MAD1L1 |
| negative regulation of DNA damage checkpoint | 1 | 165.2× | 0.055 | BRD4 |
| myoblast migration involved in skeletal muscle regeneration | 1 | 123.9× | 0.055 | ANXA1 |
| establishment or maintenance of actin cytoskeleton polarity | 1 | 123.9× | 0.055 | PDLIM1 |
| neuron projection regeneration | 1 | 123.9× | 0.055 | PTPRF |
| response to silicon dioxide | 1 | 123.9× | 0.055 | IFT88 |
| clustering of voltage-gated potassium channels | 1 | 123.9× | 0.055 | CNTNAP2 |
| regulation of hormone secretion | 1 | 123.9× | 0.055 | ANXA1 |
| maintenance of presynaptic active zone structure | 1 | 123.9× | 0.055 | ERC2 |
| protein localization to juxtaparanode region of axon | 1 | 123.9× | 0.055 | CNTNAP2 |
Therapeutics
Drugs indicated or in trials for this disease
5 approved drugs — disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Status |
|---|---|
| Chlorpromazine | Approved (phase 4) |
| Flibanserin | Approved (phase 4) |
| Haloperidol | Approved (phase 4) |
| Olanzapine | Approved (phase 4) |
| Paliperidone | Approved (phase 4) |
12 drugs in clinical trials for this disease (phase 2–3, investigational): efficacy not established — a trial record, not an indication.
| Drug | Highest phase |
|---|---|
| Aripiprazole | Phase 3 |
| Brexpiprazole | Phase 3 |
| Mifepristone | Phase 3 |
| Quetiapine | Phase 3 |
| Risperidone | Phase 3 |
| Rituximab | Phase 3 |
| Acetylcysteine | Phase 2 |
| Cannabidiol | Phase 2 |
| Dexmedetomidine | Phase 2 |
| Glycine | Phase 2 |
| Serine | Phase 2 |
| Taurine | Phase 2 |
Drug target analysis
Approved (phase 4): 5 · Phase ≥3: 5 · Phased (≥1): 7 · Undrugged: 33
Druggability breadth: 12 of 40 evidence-associated genes (30%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| STIM1 | TERIFLUNOMIDE |
| BRD4 | ACETAMINOPHEN |
| CACNG5 | NIMODIPINE |
| GABRR1 | LINDANE |
| PRKCE | INGENOL MEBUTATE |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| BRD4 | 31 | 4 |
| PRKCE | 21 | 4 |
| GABRR1 | 5 | 4 |
| STIM1 | 2 | 4 |
| CACNG5 | 2 | 4 |
| ANXA1 | 1 | 2 |
| PTPRF | 1 | 2 |
| TRPS1 | 0 | 0 |
| CNTNAP2 | 0 | 0 |
| SORBS1 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| TERIFLUNOMIDE | 4 | STIM1 |
| ACETAMINOPHEN | 4 | BRD4 |
| FEDRATINIB | 4 | BRD4, PRKCE |
| NITROXOLINE | 4 | BRD4 |
| ROMIDEPSIN | 4 | BRD4 |
| BELINOSTAT | 4 | BRD4 |
| PANOBINOSTAT | 4 | BRD4 |
| ALPRAZOLAM | 4 | BRD4 |
| LENALIDOMIDE | 4 | BRD4 |
| NORFLOXACIN | 4 | BRD4 |
| VORINOSTAT | 4 | BRD4 |
| NIMODIPINE | 4 | CACNG5 |
| TACRINE | 4 | CACNG5 |
| LINDANE | 4 | GABRR1 |
| AMINOLEVULINIC ACID | 4 | GABRR1 |
| INGENOL MEBUTATE | 4 | PRKCE |
| MIDOSTAURIN | 4 | PRKCE |
| TAMOXIFEN | 4 | PRKCE |
| RUXOLITINIB | 4 | PRKCE |
| BOSUTINIB | 4 | PRKCE |
| VOLASERTIB | 3 | BRD4 |
| DINACICLIB | 3 | BRD4 |
| TACEDINALINE | 3 | BRD4 |
| APABETALONE | 3 | BRD4 |
| PELABRESIB | 3 | BRD4 |
| SURAMIN | 3 | PRKCE |
| FASUDIL | 3 | PRKCE |
| ALVOCIDIB | 3 | PRKCE |
| CURCUMIN | 3 | PRKCE |
| ENZASTAURIN HYDROCHLORIDE | 3 | PRKCE |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 6.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| BRD4 | 4,603 | Binding:4569, Functional:30, ADMET:4 |
| PRKCE | 722 | Binding:707, Functional:14, ADMET:1 |
| PTPRF | 136 | Binding:135, Functional:1 |
| GABRR1 | 55 | Binding:29, Functional:26 |
| STIM1 | 35 | Binding:33, Functional:1, ADMET:1 |
| PHF8 | 26 | Binding:26 |
| CACNG5 | 13 | Binding:13 |
| ANXA1 | 13 | Binding:13 |
| ADM | 3 | Binding:3 |
| SORBS1 | 1 | Binding:1 |
| B3GALT5 | 1 | Binding:1 |
| PTPRU | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| PHF8 | 1.14.11.65, 1.14.18.B1 | [histone H3]-dimethyl-L-lysine9 demethylase, |
| POMGNT2 | 2.4.1.312 | protein O-mannose beta-1,4-N-acetylglucosaminyltransferase |
| PRKCE | 2.7.11.13 | protein kinase C |
| PTPRF | 3.1.3.48 | protein-tyrosine-phosphatase |
| PTPRN2 | 3.1.3.48 | protein-tyrosine-phosphatase |
| PTPRU | 3.1.3.48 | protein-tyrosine-phosphatase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| BRD4 | 4,603 |
| PRKCE | 722 |
| PTPRF | 136 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 40; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| TERIFLUNOMIDE | 4 | STIM1 |
| ACETAMINOPHEN | 4 | BRD4 |
| FEDRATINIB | 4 | BRD4, PRKCE |
| NITROXOLINE | 4 | BRD4 |
| ROMIDEPSIN | 4 | BRD4 |
| BELINOSTAT | 4 | BRD4 |
| PANOBINOSTAT | 4 | BRD4 |
| ALPRAZOLAM | 4 | BRD4 |
| LENALIDOMIDE | 4 | BRD4 |
| NORFLOXACIN | 4 | BRD4 |
| VORINOSTAT | 4 | BRD4 |
| NIMODIPINE | 4 | CACNG5 |
| TACRINE | 4 | CACNG5 |
| LINDANE | 4 | GABRR1 |
| AMINOLEVULINIC ACID | 4 | GABRR1 |
| INGENOL MEBUTATE | 4 | PRKCE |
| MIDOSTAURIN | 4 | PRKCE |
| TAMOXIFEN | 4 | PRKCE |
| RUXOLITINIB | 4 | PRKCE |
| BOSUTINIB | 4 | PRKCE |
| VOLASERTIB | 3 | BRD4 |
| DINACICLIB | 3 | BRD4 |
| TACEDINALINE | 3 | BRD4 |
| APABETALONE | 3 | BRD4 |
| PELABRESIB | 3 | BRD4 |
| SURAMIN | 3 | PRKCE |
| FASUDIL | 3 | PRKCE |
| ALVOCIDIB | 3 | PRKCE |
| CURCUMIN | 3 | PRKCE |
| ENZASTAURIN HYDROCHLORIDE | 3 | PRKCE |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 5 | STIM1, BRD4, CACNG5, GABRR1, PRKCE |
| B | Phased (≥1) drug, not yet approved | 2 | ANXA1, PTPRF |
| C | Druggable family + PDB, no drug | 6 | ASTN2, NALCN, CNTN5, POMGNT2, PTPRN2, PTPRU |
| D | Druggable family + AlphaFold only, no drug | 2 | DIPK1A, IGSF5 |
| E | Difficult family or no structure, no drug | 25 | TRPS1, CNTNAP2, SORBS1, SHC4, SEMA6D, MYO18B, RIN2, NPAS3, RUFY1, CCNL1 (+15 more) |
Undrugged target profiles
33 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| TRPS1 | 0 | — |
| CNTNAP2 | 0 | — |
| SORBS1 | 1 | — |
| SHC4 | 0 | — |
| SEMA6D | 0 | — |
| ASTN2 | 0 | — |
| MYO18B | 0 | — |
| RIN2 | 0 | — |
| NALCN | 0 | — |
| NPAS3 | 0 | — |
| RUFY1 | 0 | — |
| CCNL1 | 0 | — |
| IFT88 | 0 | — |
| PDLIM1 | 0 | — |
| PHF8 | 26 | — |
| DAOA | 0 | — |
| CNTN5 | 0 | — |
| CYCSP44 | 0 | — |
| ADM | 3 | — |
| POMGNT2 | 0 | — |
| LRRIQ3 | 0 | — |
| FAM110B | 0 | — |
| DLGAP1 | 0 | — |
| NCKAP5 | 0 | — |
| ERC2 | 0 | — |
| DIPK1A | 0 | — |
| LEKR1 | 0 | — |
| TMEM212 | 0 | — |
| IGSF5 | 0 | — |
| MAD1L1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 493.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 416 |
| PHASE3 | 24 |
| PHASE2 | 20 |
| PHASE1 | 14 |
| PHASE4 | 10 |
| PHASE2/PHASE3 | 5 |
| EARLY_PHASE1 | 3 |
| PHASE1/PHASE2 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT04289142 | PHASE4 | RECRUITING | Cognitive Outcomes After Dexmedetomidine Sedation in Cardiac Surgery Patients |
| NCT00001658 | PHASE4 | COMPLETED | Amoxicillin for the Treatment of Pediatric Autoimmune Disorders Associated With Streptococcal Infections |
| NCT00145847 | PHASE4 | COMPLETED | Naltrexone Treatment of Alcohol Abuse in Schizophrenia |
| NCT00259883 | PHASE4 | COMPLETED | Combination Of PAXIL Tablet And Benzodiazepines |
| NCT00288782 | PHASE4 | COMPLETED | PET Neuroimaging of [11C]Mirtazapine |
| NCT01783912 | PHASE4 | COMPLETED | Helping Those With Mental Illness Quit Smoking |
| NCT02022709 | PHASE4 | COMPLETED | Efficacy of Exposure and Response Prevention(ERP) and SSRIs in Chinese OCD Patients |
| NCT03655847 | PHASE4 | UNKNOWN | Acceptable Hemodynamic Changes in Dexmedetomidine for Single Intravenous Bolus Injection |
| NCT03830398 | PHASE4 | UNKNOWN | Comparison of Drugs on Headache Treatment After ECT Treatment |
| NCT04781998 | PHASE4 | COMPLETED | Is Saxenda® a Viable Treatment of Obese Patients in Forensic Psychiatry? |
| NCT05508789 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of Donanemab (LY3002813) in Participants With Early Symptomatic Alzheimer’s Disease (TRAILBLAZER-ALZ 5) |
| NCT05738486 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of Different Donanemab (LY3002813) Dosing Regimens in Adults With Early Alzheimer’s Disease (TRAILBLAZER-ALZ 6) |
| NCT05946486 | PHASE3 | NOT_YET_RECRUITING | Evaluation of the Efficacy of Immunomodulatory Therapy in Case of Psychiatric Disorders With Proven Dysimmunity. |
| NCT06387290 | PHASE3 | RECRUITING | Optimizing Chronic Pain Care With Mindfulness and Chronic Pain Management Visits |
| NCT07497711 | PHASE2/PHASE3 | RECRUITING | Virtual Menstrual Pain Approaches in Females |
| NCT00034762 | PHASE3 | COMPLETED | Efficacy and Safety of Risperidone Compared With Placebo in the Treatment of Psychotic Symptoms in Patients With Alzheimer’s Disease |
| NCT00034892 | PHASE3 | COMPLETED | CAFE Comparison of Atypicals in First Episode of Psychosis |
| NCT00035802 | PHASE3 | COMPLETED | A Study to Evaluate the Safety and Effectiveness of Topiramate Compared to Placebo in the Treatment of Patients With Bipolar I Disorder |
| NCT00183313 | PHASE3 | COMPLETED | Improving Primary Care in Patients With Mental Disorders |
| NCT00183716 | PHASE3 | COMPLETED | The Trauma Recovery and Empowerment Model for Treating Post-Traumatic Stress Disorder in Women |
| NCT00216502 | PHASE3 | COMPLETED | A Study of the Safety and Effectiveness of Galantamine in Patients With Alzheimer’s Disease |
| NCT00240695 | PHASE3 | COMPLETED | A Follow-up Study to Assess Safety and Tolerability of Galantamine Treatment in Individuals With Mild Cognitive Impairment |
| NCT00260013 | PHASE2/PHASE3 | COMPLETED | Transition Into Primary-care Psychiatry (TIPP) |
| NCT00561574 | PHASE3 | COMPLETED | A Long-Term Safety Study of Org 50081 (Esmirtazapine) in Elderly Outpatients With Chronic Primary Insomnia (176005/P05697/MK-8265-001) |
| NCT00561821 | PHASE3 | COMPLETED | Efficacy and Safety Study of Org 50081 (Esmirtazapine) in Elderly Participants (P05709) |
| NCT00631657 | PHASE3 | COMPLETED | A 6-Month Efficacy and Safety Study of Org 50081 in Adult Patients With Chronic Primary Insomnia (21106/P05701/MK-8265-002) |
| NCT00692081 | PHASE2/PHASE3 | COMPLETED | Social Competence Training for Adolescents With Borderline Intellectual Functioning |
| NCT00750919 | PHASE3 | TERMINATED | Twenty-six Week Extension Trial of Org 50081 (Esmirtazapine) in Outpatients With Chronic Primary Insomnia (176003/P05721/MK-8265-007) |
| NCT00942097 | PHASE2/PHASE3 | COMPLETED | Homeopathic Medication and Nutritional Oriented Diet to Treat Overweight Pregnant Women With Mental Disorder |
| NCT01201187 | PHASE3 | COMPLETED | Efficacy and Safety Study of Combination of Ginkgo Extract and Ginseng Extract(YY-162)in Children With ADHD |
| NCT01360632 | PHASE3 | COMPLETED | Study of the Safety and Efficacy of Two Fixed Doses of OPC-34712 as Adjunctive Therapy in the Treatment of Adults With Major Depressive Disorder (the Polaris Trial) |
| NCT01360645 | PHASE3 | COMPLETED | Study of the Safety and Efficacy of Fixed Dose OPC-34712 as Adjunctive Therapy in the Treatment of Adults With Major Depressive Disorder (the Pyxis Trial) |
| NCT01360866 | PHASE3 | COMPLETED | Safety and Tolerability of Oral OPC-34712 as Adjunctive Therapy in Adults With Major Depressive Disorder (the Orion Trial) |
| NCT01407120 | PHASE2/PHASE3 | COMPLETED | 15 Year Follow-up of New Beginnings Program for Divorced Families |
| NCT01536210 | PHASE3 | COMPLETED | Efficacy and Safety Study of Combination of Ginkgo Extract and Ginseng Extract in Children With ADHD(Attention Deficit Hyperactivity Disorder) |
| NCT01727726 | PHASE3 | COMPLETED | A Study of Flexible-dose Brexpiprazole as Adjunctive Therapy in the Treatment of Adults With Major Depressive Disorder, the Delphinus Trial |
| NCT01862640 | PHASE3 | COMPLETED | A Phase 3, 12-week, Multicenter, Randomized, Double-blind, Placebo-controlled Trial to Evaluate the Efficacy, Safety, and Tolerability of 2 Fixed Doses of Brexpiprazole in the Treatment of Alzheimer’s Agitation |
| NCT01922258 | PHASE3 | COMPLETED | Safety and Tolerability Study of Flexible Dosing of Brexpiprazole in the Treatment of Subjects With Agitation Associated With Dementia of the Alzheimer’s Type |
| NCT02196506 | PHASE3 | COMPLETED | Study of the Safety and Efficacy of Fixed-dose Brexpiprazole (OPC-34712) as Adjunctive Therapy in the Treatment of Adults With Major Depressive Disorder With and Without Anxious Distress |
| NCT05554094 | PHASE2 | ACTIVE_NOT_RECRUITING | Psilocybin for the Treatment of Veterans With Post-Traumatic Stress Disorder |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| BREXPIPRAZOLE | 4 | 7 |
| FLUOXETINE | 4 | 6 |
| PAROXETINE | 4 | 4 |
| PRUCALOPRIDE | 4 | 4 |
| CITALOPRAM | 4 | 3 |
| FLUVOXAMINE | 4 | 3 |
| DONANEMAB | 4 | 2 |
| GALANTAMINE HYDROBROMIDE | 4 | 2 |
| GANAXOLONE | 4 | 2 |
| AMOXICILLIN | 4 | 1 |
| FLORBETABEN F18 | 4 | 1 |
| LAMOTRIGINE | 4 | 1 |
| MIDAZOLAM | 4 | 1 |
| MIRTAZAPINE | 4 | 1 |
| NICOTINE | 4 | 1 |
| OLIVE OIL | 4 | 1 |
| PALIPERIDONE PALMITATE | 4 | 1 |
| QUETIAPINE FUMARATE | 4 | 1 |
| ROTIGOTINE | 4 | 1 |
| SERTRALINE | 4 | 1 |
| TOPIRAMATE | 4 | 1 |
| TROMETHAMINE | 4 | 1 |
| ZOPICLONE | 4 | 1 |
| ESMIRTAZAPINE | 3 | 5 |
| LEUCINE | 3 | 1 |
| OMEGA-3 FATTY ACIDS | 3 | 1 |
| PSILOCYBIN | 3 | 1 |
| PEGIPANERMIN | 2 | 3 |
| IOMAZENIL | 2 | 1 |
| MEBUFOTENIN | 2 | 1 |
Related Atlas pages
- Cohort genes: STIM1, TRPS1, BRD4, CNTNAP2, CACNG5, SORBS1, SHC4, SEMA6D, ASTN2, MYO18B, RIN2, NALCN, NPAS3, RUFY1, CCNL1, IFT88, PDLIM1, PHF8, DAOA, CNTN5, ADM, POMGNT2, LRRIQ3, FAM110B, DLGAP1, NCKAP5, ERC2, DIPK1A, LEKR1, TMEM212, GABRR1, ANXA1, IGSF5, MAD1L1, B3GALT5, PRKCE, PTPRF, PTPRN2, PTPRU
- Drugs: Brexpiprazole, Fluoxetine, Paroxetine, Prucalopride, Citalopram, Fluvoxamine, Donanemab, Galantamine, Ganaxolone, Amoxicillin, FLORBETABEN F18, Lamotrigine, Midazolam, Mirtazapine, Nicotine, Olive Oil, Paliperidone Palmitate, Quetiapine Fumarate, Rotigotine, Sertraline, Topiramate, Tromethamine, Zopiclone, Esmirtazapine, OMEGA-3 FATTY ACIDS, Psilocybin