Microform holoprosencephaly
diseaseOn this page
Also known as holoprosencephaly-likeHoloprosencéphalie, minor formHPE, minor formHPE-LMicroform HPE
Summary
Microform holoprosencephaly (MONDO:0017219) is a disease with 5 cohort genes. The dominant Reactome pathway is Hedgehog ‘off’ state (3 cohort genes).
At a glance
- Prevalence: 1-9 / 100 000 (Europe)
- Cohort genes: 5
- ClinVar variants: 14
- Phenotypes (HPO): 35
Clinical features
Epidemiology
Prevalence records
1 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Point prevalence | 1-9 / 100 000 | Europe | Not yet validated |
Signs & symptoms
Clinical features (HPO)
35 HPO clinical features (Orphanet curated; top 35 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0000453 | Choanal atresia | Very frequent (80-99%) |
| HP:0006315 | Single median maxillary incisor | Very frequent (80-99%) |
| HP:0010644 | Midnasal stenosis | Very frequent (80-99%) |
| HP:0000252 | Microcephaly | Frequent (30-79%) |
| HP:0000322 | Short philtrum | Frequent (30-79%) |
| HP:0000446 | Narrow nasal bridge | Frequent (30-79%) |
| HP:0000601 | Hypotelorism | Frequent (30-79%) |
| HP:0001249 | Intellectual disability | Frequent (30-79%) |
| HP:0001511 | Intrauterine growth retardation | Frequent (30-79%) |
| HP:0001622 | Premature birth | Frequent (30-79%) |
| HP:0004322 | Short stature | Frequent (30-79%) |
| HP:0010804 | Tented upper lip vermilion | Frequent (30-79%) |
| HP:0000062 | Ambiguous genitalia | Occasional (5-29%) |
| HP:0000104 | Renal agenesis | Occasional (5-29%) |
| HP:0000175 | Cleft palate | Occasional (5-29%) |
| HP:0000202 | Orofacial cleft | Occasional (5-29%) |
| HP:0000463 | Anteverted nares | Occasional (5-29%) |
| HP:0000486 | Strabismus | Occasional (5-29%) |
| HP:0000612 | Iris coloboma | Occasional (5-29%) |
| HP:0000821 | Hypothyroidism | Occasional (5-29%) |
| HP:0000871 | Panhypopituitarism | Occasional (5-29%) |
| HP:0001028 | Hemangioma | Occasional (5-29%) |
| HP:0001250 | Seizure | Occasional (5-29%) |
| HP:0001274 | Agenesis of corpus callosum | Occasional (5-29%) |
| HP:0001360 | Holoprosencephaly | Occasional (5-29%) |
| HP:0001636 | Tetralogy of Fallot | Occasional (5-29%) |
| HP:0002099 | Asthma | Occasional (5-29%) |
| HP:0002247 | Duodenal atresia | Occasional (5-29%) |
| HP:0002650 | Scoliosis | Occasional (5-29%) |
| HP:0003196 | Short nose | Occasional (5-29%) |
| HP:0003458 | EMG: myopathic abnormalities | Occasional (5-29%) |
| HP:0008736 | Hypoplasia of penis | Occasional (5-29%) |
| HP:0009800 | Maternal diabetes | Occasional (5-29%) |
| HP:0009914 | Cyclopia | Occasional (5-29%) |
| HP:0030680 | Abnormal cardiovascular system morphology | Occasional (5-29%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | microform holoprosencephaly |
| Mondo ID | MONDO:0017219 |
| Orphanet | 280200 |
| DOID | DOID:0111380 |
| ICD-11 | 44293173 |
| UMLS | C5393309 |
| MedGen | 1711978 |
| GARD | 0017290 |
| Is cancer (heuristic) | no |
Also known as: HoloprosencC)phalie, minor form · holoprosencephaly-like · Holoprosencéphalie, minor form · HPE, minor form · HPE-L · Microform HPE
Data availability: 14 ClinVar variants.
Disease family
An umbrella term covering 3 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › syndromic disease › holoprosencephaly › microform holoprosencephaly
Related subtypes (16): holoprosencephaly 3, holoprosencephaly 4, holoprosencephaly 2, holoprosencephaly 1, holoprosencephaly 6, holoprosencephaly 8, holoprosencephaly 7, chromosome 1q41-q42 deletion syndrome, holoprosencephaly 11, lobar holoprosencephaly, alobar holoprosencephaly, holoprosencephaly 13, X-linked, holoprosencephaly 14, holoprosencephaly 12 with or without pancreatic agenesis, semilobar holoprosencephaly, holoprosencephaly 10
Subtypes (3): solitary median maxillary central incisor syndrome, holoprosencephaly 5, holoprosencephaly 9
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
14 retrieved; paginated sample, class counts are floors:
5 likely pathogenic, 4 uncertain significance, 4 conflicting classifications of pathogenicity, 1 pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 235076 | NM_001374353.1(GLI2):c.790C>T (p.Arg264Ter) | GLI2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 235086 | NM_023110.3(FGFR1):c.1928G>A (p.Gly643Asp) | FGFR1 | Likely pathogenic | no assertion criteria provided |
| 235075 | NM_001374353.1(GLI2):c.596dup (p.Ala200fs) | GLI2 | Likely pathogenic | no assertion criteria provided |
| 235077 | NM_001374353.1(GLI2):c.2013del (p.Ser673fs) | GLI2 | Likely pathogenic | no assertion criteria provided |
| 235078 | NM_001374353.1(GLI2):c.2186G>A (p.Trp729Ter) | GLI2 | Likely pathogenic | no assertion criteria provided |
| 235079 | NM_001374353.1(GLI2):c.4710G>C (p.Ter1570Tyr) | GLI2 | Likely pathogenic | no assertion criteria provided |
| 1334043 | NM_001377229.1(DISP1):c.566C>T (p.Pro189Leu) | DISP1 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 41655 | NM_000264.5(PTCH1):c.2485G>A (p.Val829Met) | LOC100507346 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 1570319 | NM_000264.5(PTCH1):c.585-17_585-13del | PTCH1 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 135281 | NM_016169.4(SUFU):c.1022C>T (p.Pro341Leu) | SUFU | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 1064558 | NM_001377229.1(DISP1):c.3413del (p.Gly1138fs) | DISP1 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 1334044 | NM_001377229.1(DISP1):c.664G>A (p.Gly222Ser) | DISP1 | Uncertain significance | criteria provided, single submitter |
| 235093 | NM_001377229.1(DISP1):c.2898G>A (p.Trp966Ter) | DISP1 | Uncertain significance | criteria provided, single submitter |
| 235074 | NM_001374353.1(GLI2):c.349G>A (p.Ala117Thr) | GLI2 | Uncertain significance | no assertion criteria provided |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 47 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| SUFU | Orphanet:2495 | Meningioma |
| SUFU | Orphanet:251858 | Medulloblastoma with extensive nodularity |
| SUFU | Orphanet:251863 | Desmoplastic/nodular medulloblastoma |
| SUFU | Orphanet:263662 | Familial multiple meningioma |
| SUFU | Orphanet:280200 | Microform holoprosencephaly |
| SUFU | Orphanet:377 | Gorlin syndrome |
| SUFU | Orphanet:475 | Isolated Joubert syndrome |
| DISP1 | Orphanet:220386 | Semilobar holoprosencephaly |
| DISP1 | Orphanet:280195 | Septopreoptic holoprosencephaly |
| DISP1 | Orphanet:280200 | Microform holoprosencephaly |
| DISP1 | Orphanet:93924 | Lobar holoprosencephaly |
| DISP1 | Orphanet:93925 | Alobar holoprosencephaly |
| DISP1 | Orphanet:93926 | Midline interhemispheric variant of holoprosencephaly |
| FGFR1 | Orphanet:168953 | Myeloid/lymphoid neoplasm associated with FGFR1 rearrangement |
| FGFR1 | Orphanet:2117 | Hartsfield syndrome |
| FGFR1 | Orphanet:220386 | Semilobar holoprosencephaly |
| FGFR1 | Orphanet:2396 | Encephalocraniocutaneous lipomatosis |
| FGFR1 | Orphanet:251576 | Gliosarcoma |
| FGFR1 | Orphanet:251579 | Giant cell glioblastoma |
| FGFR1 | Orphanet:251615 | Pilomyxoid astrocytoma |
| FGFR1 | Orphanet:2645 | Osteoglosphonic dysplasia |
| FGFR1 | Orphanet:280200 | Microform holoprosencephaly |
| FGFR1 | Orphanet:314950 | Primary hypereosinophilic syndrome |
| FGFR1 | Orphanet:3157 | Septo-optic dysplasia spectrum |
| FGFR1 | Orphanet:3366 | Non-syndromic metopic craniosynostosis |
| FGFR1 | Orphanet:432 | Normosmic congenital hypogonadotropic hypogonadism |
| FGFR1 | Orphanet:478 | Kallmann syndrome |
| FGFR1 | Orphanet:93258 | Pfeiffer syndrome type 1 |
| FGFR1 | Orphanet:93924 | Lobar holoprosencephaly |
| FGFR1 | Orphanet:99798 | Oligodontia |
| GLI2 | Orphanet:220386 | Semilobar holoprosencephaly |
| GLI2 | Orphanet:280195 | Septopreoptic holoprosencephaly |
| GLI2 | Orphanet:280200 | Microform holoprosencephaly |
| GLI2 | Orphanet:420584 | Postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome |
| GLI2 | Orphanet:93924 | Lobar holoprosencephaly |
| GLI2 | Orphanet:93925 | Alobar holoprosencephaly |
| GLI2 | Orphanet:93926 | Midline interhemispheric variant of holoprosencephaly |
| GLI2 | Orphanet:95494 | Combined pituitary hormone deficiencies, genetic forms |
| PTCH1 | Orphanet:220386 | Semilobar holoprosencephaly |
| PTCH1 | Orphanet:2353 | Schilbach-Rott syndrome |
| PTCH1 | Orphanet:280195 | Septopreoptic holoprosencephaly |
| PTCH1 | Orphanet:280200 | Microform holoprosencephaly |
| PTCH1 | Orphanet:377 | Gorlin syndrome |
| PTCH1 | Orphanet:77301 | Monosomy 9q22.3 syndrome |
| PTCH1 | Orphanet:93924 | Lobar holoprosencephaly |
| PTCH1 | Orphanet:93925 | Alobar holoprosencephaly |
| PTCH1 | Orphanet:93926 | Midline interhemispheric variant of holoprosencephaly |
Cohort genes → proteins
5 cohort genes, 5 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 5 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| SUFU | HGNC:16466 | ENSG00000107882 | Q9UMX1 | Suppressor of fused homolog | clinvar |
| DISP1 | HGNC:19711 | ENSG00000154309 | Q96F81 | Protein dispatched homolog 1 | clinvar |
| FGFR1 | HGNC:3688 | ENSG00000077782 | P11362 | Fibroblast growth factor receptor 1 | clinvar |
| GLI2 | HGNC:4318 | ENSG00000074047 | P10070 | Zinc finger protein GLI2 | clinvar |
| PTCH1 | HGNC:9585 | ENSG00000185920 | Q13635 | Protein patched homolog 1 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| SUFU | Suppressor of fused homolog | Negative regulator in the hedgehog/smoothened signaling pathway. |
| DISP1 | Protein dispatched homolog 1 | Functions in hedgehog (Hh) signaling. |
| FGFR1 | Fibroblast growth factor receptor 1 | Tyrosine-protein kinase that acts as a cell-surface receptor for fibroblast growth factors and plays an essential role in the regulation of embryonic development, cell proliferation, differentiation and migration. |
| GLI2 | Zinc finger protein GLI2 | Functions as a transcription regulator in the hedgehog (Hh) pathway. |
| PTCH1 | Protein patched homolog 1 | Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). |
Protein-family classification
Druggable: 1 · Difficult: 1 · Unknown: 3 · Druggable fraction: 0.2
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Kinase | 1 | 5.5× | 0.503 |
| Transcription factor | 1 | 1.6× | 0.608 |
| Other/Unknown | 3 | 1.1× | 0.608 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| SUFU | Other/Unknown | no | Suppressor_of_fused, Suppressor_of_fused_euk, SUFU-like_domain | |
| DISP1 | Other/Unknown | no | SSD, MMPL_dom, Dispatched_Hh_regulator | |
| FGFR1 | Kinase | yes | 2.7.10.1 | Prot_kinase_dom, Ser-Thr/Tyr_kinase_cat_dom, Ig_sub2 |
| GLI2 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, GLI-like | |
| PTCH1 | Other/Unknown | no | SSD, TM_rcpt_patched, HMGCR/SNAP/NPC1-like_SSD |
Expression context
Cohort genes with no expression data: 0.
4 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 5 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| tibia | 2 |
| kidney epithelium | 1 |
| upper arm skin | 1 |
| vena cava | 1 |
| left testis | 1 |
| male germ line stem cell (sensu Vertebrata) in testis | 1 |
| right testis | 1 |
| buccal mucosa cell | 1 |
| calcaneal tendon | 1 |
| stromal cell of endometrium | 1 |
| germinal epithelium of ovary | 1 |
| ventricular zone | 1 |
| dorsal root ganglion | 1 |
| trigeminal ganglion | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| SUFU | 226 | ubiquitous | yes | upper arm skin, kidney epithelium, vena cava |
| DISP1 | 221 | ubiquitous | marker | male germ line stem cell (sensu Vertebrata) in testis, right testis, left testis |
| FGFR1 | 292 | ubiquitous | marker | buccal mucosa cell, stromal cell of endometrium, calcaneal tendon |
| GLI2 | 211 | ubiquitous | marker | tibia, germinal epithelium of ovary, ventricular zone |
| PTCH1 | 275 | ubiquitous | marker | tibia, dorsal root ganglion, trigeminal ganglion |
Protein interactions among cohort
Intra-cohort edges: 4.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| FGFR1 | 5,693 |
| PTCH1 | 3,368 |
| GLI2 | 3,112 |
| SUFU | 2,188 |
| DISP1 | 621 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| DISP1 | GLI2 | string_interaction |
| GLI2 | PTCH1 | string_interaction |
| GLI2 | SUFU | string_interaction |
| PTCH1 | SUFU | string_interaction |
Structural data
PDB: 4 · AlphaFold-only: 1 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| FGFR1 | P11362 | 83 |
| PTCH1 | Q13635 | 16 |
| SUFU | Q9UMX1 | 10 |
| DISP1 | Q96F81 | 4 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| GLI2 | P10070 | 42.68 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 34. Enrichment computed across 5 evidence-associated genes (4 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Hedgehog ‘off’ state | 3 | 133.8× | 2e-05 | SUFU, GLI2, PTCH1 |
| Hedgehog ‘on’ state | 3 | 119.0× | 2e-05 | SUFU, GLI2, PTCH1 |
| GLI proteins bind promoters of Hh responsive genes to promote transcription | 2 | 815.7× | 2e-05 | GLI2, PTCH1 |
| Degradation of GLI2 by the proteasome | 2 | 112.0× | 1e-03 | SUFU, GLI2 |
| Signaling by FGFR1 amplification mutants | 1 | 1427.5× | 0.005 | FGFR1 |
| FGFR1c and Klotho ligand binding and activation | 1 | 713.8× | 0.007 | FGFR1 |
| Signaling by plasma membrane FGFR1 fusions | 1 | 713.8× | 0.007 | FGFR1 |
| RUNX2 regulates chondrocyte maturation | 1 | 571.0× | 0.007 | GLI2 |
| Ligand-receptor interactions | 1 | 356.9× | 0.010 | PTCH1 |
| Epithelial-Mesenchymal Transition (EMT) during gastrulation | 1 | 356.9× | 0.010 | FGFR1 |
| FGFR1b ligand binding and activation | 1 | 317.2× | 0.010 | FGFR1 |
| Signaling by activated point mutants of FGFR1 | 1 | 237.9× | 0.012 | FGFR1 |
| FGFR1c ligand binding and activation | 1 | 190.3× | 0.014 | FGFR1 |
| Phospholipase C-mediated cascade: FGFR1 | 1 | 167.9× | 0.014 | FGFR1 |
| Activation of SMO | 1 | 158.6× | 0.014 | PTCH1 |
| Downstream signaling of activated FGFR1 | 1 | 135.9× | 0.014 | FGFR1 |
| Signal transduction by L1 | 1 | 129.8× | 0.014 | FGFR1 |
| PI-3K cascade:FGFR1 | 1 | 129.8× | 0.014 | FGFR1 |
| SHC-mediated cascade:FGFR1 | 1 | 124.1× | 0.014 | FGFR1 |
| FRS-mediated FGFR1 signaling | 1 | 114.2× | 0.015 | FGFR1 |
| Formation of paraxial mesoderm | 1 | 102.0× | 0.016 | FGFR1 |
| Negative regulation of FGFR1 signaling | 1 | 92.1× | 0.017 | FGFR1 |
| Signaling by FGFR1 in disease | 1 | 73.2× | 0.020 | FGFR1 |
| PI3K Cascade | 1 | 68.0× | 0.020 | FGFR1 |
| NCAM signaling for neurite out-growth | 1 | 68.0× | 0.020 | FGFR1 |
| Degradation of GLI1 by the proteasome | 1 | 56.0× | 0.022 | SUFU |
| GLI3 is processed to GLI3R by the proteasome | 1 | 56.0× | 0.022 | SUFU |
| Class B/2 (Secretin family receptors) | 1 | 47.6× | 0.025 | PTCH1 |
| Signaling by Hedgehog | 1 | 46.0× | 0.025 | SUFU |
| Constitutive Signaling by Aberrant PI3K in Cancer | 1 | 31.7× | 0.035 | FGFR1 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| dorsal/ventral neural tube patterning | 2 | 321.0× | 0.002 | SUFU, PTCH1 |
| negative regulation of smoothened signaling pathway | 2 | 182.2× | 0.002 | SUFU, PTCH1 |
| dorsal/ventral pattern formation | 2 | 168.5× | 0.002 | DISP1, PTCH1 |
| embryonic limb morphogenesis | 2 | 160.5× | 0.002 | FGFR1, PTCH1 |
| negative regulation of transcription by RNA polymerase II | 4 | 14.2× | 0.002 | SUFU, FGFR1, GLI2, PTCH1 |
| stem cell proliferation | 2 | 124.8× | 0.003 | FGFR1, PTCH1 |
| negative regulation of osteoblast differentiation | 2 | 118.3× | 0.003 | SUFU, PTCH1 |
| patched ligand maturation | 1 | 3370.4× | 0.005 | DISP1 |
| positive regulation of cellular response to drug | 1 | 3370.4× | 0.005 | SUFU |
| response to chlorate | 1 | 1685.2× | 0.005 | PTCH1 |
| smoothened signaling pathway involved in ventral spinal cord interneuron specification | 1 | 1685.2× | 0.005 | SUFU |
| smoothened signaling pathway involved in spinal cord motor neuron cell fate specification | 1 | 1685.2× | 0.005 | SUFU |
| neural plate axis specification | 1 | 1685.2× | 0.005 | PTCH1 |
| vitamin D3 metabolic process | 1 | 1685.2× | 0.005 | FGFR1 |
| cell proliferation involved in metanephros development | 1 | 1685.2× | 0.005 | PTCH1 |
| maintenance of protein localization in organelle | 1 | 1685.2× | 0.005 | SUFU |
| positive regulation of mitotic cell cycle DNA replication | 1 | 1685.2× | 0.005 | FGFR1 |
| positive regulation of parathyroid hormone secretion | 1 | 1685.2× | 0.005 | FGFR1 |
| regulation of extrinsic apoptotic signaling pathway in absence of ligand | 1 | 1685.2× | 0.005 | FGFR1 |
| neural tube closure | 2 | 74.9× | 0.005 | SUFU, PTCH1 |
| smoothened signaling pathway | 2 | 72.5× | 0.005 | DISP1, GLI2 |
| spermatid development | 2 | 58.1× | 0.005 | SUFU, PTCH1 |
| skeletal system development | 2 | 50.3× | 0.005 | FGFR1, GLI2 |
| ventral midline development | 1 | 1123.5× | 0.005 | GLI2 |
| regulation of phosphate transport | 1 | 1123.5× | 0.005 | FGFR1 |
| floor plate formation | 1 | 1123.5× | 0.005 | GLI2 |
| spinal cord ventral commissure morphogenesis | 1 | 1123.5× | 0.005 | GLI2 |
| fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development | 1 | 1123.5× | 0.005 | FGFR1 |
| regulation of lateral mesodermal cell fate specification | 1 | 1123.5× | 0.005 | FGFR1 |
| cell differentiation involved in kidney development | 1 | 1123.5× | 0.005 | PTCH1 |
Therapeutics
Drug target analysis
Approved (phase 4): 1 · Phase ≥3: 1 · Phased (≥1): 1 · Undrugged: 4
Druggability breadth: 4 of 5 evidence-associated genes (80%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| FGFR1 | PONATINIB |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| FGFR1 | 93 | 4 |
| SUFU | 0 | 0 |
| DISP1 | 0 | 0 |
| GLI2 | 0 | 0 |
| PTCH1 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| PONATINIB | 4 | FGFR1 |
| PEMIGATINIB | 4 | FGFR1 |
| NINTEDANIB | 4 | FGFR1 |
| FEDRATINIB | 4 | FGFR1 |
| TIVOZANIB | 4 | FGFR1 |
| LENVATINIB | 4 | FGFR1 |
| AXITINIB | 4 | FGFR1 |
| SORAFENIB | 4 | FGFR1 |
| NICLOSAMIDE | 4 | FGFR1 |
| INFIGRATINIB PHOSPHATE | 4 | FGFR1 |
| INFIGRATINIB | 4 | FGFR1 |
| REGORAFENIB | 4 | FGFR1 |
| ENTRECTINIB | 4 | FGFR1 |
| CABOZANTINIB | 4 | FGFR1 |
| CAPIVASERTIB | 4 | FGFR1 |
| VANDETANIB | 4 | FGFR1 |
| NINTEDANIB ESYLATE | 4 | FGFR1 |
| BRIGATINIB | 4 | FGFR1 |
| ERDAFITINIB | 4 | FGFR1 |
| UPADACITINIB | 4 | FGFR1 |
| FUTIBATINIB | 4 | FGFR1 |
| PAZOPANIB | 4 | FGFR1 |
| SUNITINIB | 4 | FGFR1 |
| DASATINIB | 4 | FGFR1 |
| MIDOSTAURIN | 4 | FGFR1 |
| LINIFANIB | 3 | FGFR1 |
| SEMAXANIB | 3 | FGFR1 |
| OLVEREMBATINIB | 3 | FGFR1 |
| BRIVANIB ALANINATE | 3 | FGFR1 |
| ORANTINIB | 3 | FGFR1 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 1.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| FGFR1 | 1,465 | Binding:1428, Functional:24, ADMET:13 |
| GLI2 | 6 | Binding:6 |
| PTCH1 | 4 | Binding:4 |
| SUFU | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| FGFR1 | 2.7.10.1 | receptor protein-tyrosine kinase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| FGFR1 | 1,465 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 5; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| PONATINIB | 4 | FGFR1 |
| PEMIGATINIB | 4 | FGFR1 |
| NINTEDANIB | 4 | FGFR1 |
| FEDRATINIB | 4 | FGFR1 |
| TIVOZANIB | 4 | FGFR1 |
| LENVATINIB | 4 | FGFR1 |
| AXITINIB | 4 | FGFR1 |
| SORAFENIB | 4 | FGFR1 |
| NICLOSAMIDE | 4 | FGFR1 |
| INFIGRATINIB PHOSPHATE | 4 | FGFR1 |
| INFIGRATINIB | 4 | FGFR1 |
| REGORAFENIB | 4 | FGFR1 |
| ENTRECTINIB | 4 | FGFR1 |
| CABOZANTINIB | 4 | FGFR1 |
| CAPIVASERTIB | 4 | FGFR1 |
| VANDETANIB | 4 | FGFR1 |
| NINTEDANIB ESYLATE | 4 | FGFR1 |
| BRIGATINIB | 4 | FGFR1 |
| ERDAFITINIB | 4 | FGFR1 |
| UPADACITINIB | 4 | FGFR1 |
| FUTIBATINIB | 4 | FGFR1 |
| PAZOPANIB | 4 | FGFR1 |
| SUNITINIB | 4 | FGFR1 |
| DASATINIB | 4 | FGFR1 |
| MIDOSTAURIN | 4 | FGFR1 |
| LINIFANIB | 3 | FGFR1 |
| SEMAXANIB | 3 | FGFR1 |
| OLVEREMBATINIB | 3 | FGFR1 |
| BRIVANIB ALANINATE | 3 | FGFR1 |
| ORANTINIB | 3 | FGFR1 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 1 | FGFR1 |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 4 | SUFU, DISP1, GLI2, PTCH1 |
Undrugged target profiles
4 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| SUFU | 1 | — |
| DISP1 | 0 | — |
| GLI2 | 6 | — |
| PTCH1 | 4 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.