Migraine disorder
diseaseOn this page
Also known as migrainemigraine headache
Summary
Migraine disorder (MONDO:0005277) is a disease with 75 cohort genes (826 GWAS associations across 74 studies) and 1,313 clinical trials. Top therapeutic interventions include sumatriptan, topiramate, and erenumab.
At a glance
- Cohort genes: 75
- GWAS associations: 826
- ClinVar variants: 17
- Clinical trials: 1,313
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | migraine disorder |
| Mondo ID | MONDO:0005277 |
| MeSH | D008881 |
| DOID | DOID:6364 |
| ICD-10-CM | G43 |
| ICD-11 | 669367341 |
| NCIT | C89715 |
| UMLS | C0149931 |
| MedGen | 57451 |
| Is cancer (heuristic) | no |
Also known as: migraine · migraine headache
Data availability: 17 ClinVar variants · 826 GWAS associations (74 studies) · 25 cell lines.
Disease family
An umbrella term covering 2 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › nervous system disorder › central nervous system disorder › brain disorder › migraine disorder
Related subtypes (70): leukoencephalopathy, megalencephalic, encephalopathy, acute, infection-induced, diabetic encephalopathy, complex cortical dysplasia with other brain malformations, hydrocephalus, brain compression, cerebral sarcoidosis, hepatic encephalopathy, visual pathway disorder, central nervous system origin vertigo, cerebellar disorder, cerebritis, olfactory nerve disorder, thalamic disorder, pituitary gland disorder, disorder of optic chiasm, basal ganglia disorder, epilepsy, mental disorder, central nervous system cyst, multiple sclerosis, prion disease, carbon monoxide-induced delayed encephalopathy, cerebral malaria, akinetic mutism, bulbar polio, Reye syndrome, brain edema, encephalomalacia, intracranial hypertension, intracranial hypotension, Wernicke encephalopathy, encephalopathy, recurrent, of childhood, XK aprosencephaly, progressive bulbar palsy, cerebrovascular disorder, glycine encephalopathy, autosomal recessive frontotemporal pachygyria, occipital pachygyria and polymicrogyria, insomnia, narcolepsy-cataplexy syndrome, megalencephaly, meningoencephalocele, cerebral cortical dysplasia, encephaloclastic disorder, bilirubin encephalopathy, autoimmune encephalopathy with parasomnia and obstructive sleep apnea, narcolepsy without cataplexy, hypothalamic hamartomas with gelastic seizures, encephalitis, cerebral lipidosis with dementia, brain neoplasm, colpocephaly, corpus callosum agenesis of blepharophimosis robin type, corpus callosum dysgenesis X-linked recessive, corpus callosum dysgenesis cleft spasm, corpus callosum dysgenesis hypopituitarism, cerebral degeneration, acute bilirubin encephalopathy, chronic bilirubin encephalopathy, atelencephaly, aprosencephaly, brain injury, traumatic encephalopathy, cluster headache syndrome, cerebral cortex disorder, midbrain disorder, encephalopathy due to mitochondrial and peroxisomal fission defect, brain malformations with or without urinary tract defects, encephalopathy, acute transient
Subtypes (2): migraine with aura, migraine without aura
Genetics & variants
GWAS landscape
826 GWAS associations across 74 studies. Top hits map to 21 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs11172113 | 1e-90 | LRP1 | T | 1.11 |
| rs57866767 | 7e-71 | PLCE1 | ? | |
| rs10218452 | 7e-71 | PRDM16 | G | 1.12 |
| rs11153082 | 7e-54 | FHL5 | G | 1.09 |
| rs6035355 | 9e-54 | SLC24A3 | ? | |
| rs10166942 | 9e-51 | MSL3B - TRPM8 | T | 1.1 |
| rs9349379 | 1e-47 | PHACTR1 | A | 1.08 |
| rs3001426 | 4e-42 | STAT6 | ? | |
| rs2078371 | 6e-42 | LINC01765 - NGF-AS1 | C | 1.11 |
| rs4888408 | 1e-41 | CFDP1 | ? | |
| rs17171710 | 3e-41 | SUGCT | ? | |
| rs2274319 | 3e-41 | MEF2D | T | 1.08 |
| rs9486715 | 7e-39 | FHL5 | ? | |
| rs2983896 | 2e-37 | FHL5 | ? | |
| rs7968719 | 9e-37 | LRP1, LRP1-AS | ? | |
| rs2160875 | 3e-36 | FGF23 - FGF6 | C | 1.07 |
| rs12134493 | 6e-36 | LINC01765 - NGF-AS1 | A | 1.11 |
| rs2971603 | 2e-35 | FHL5 | ? | |
| rs62155750 | 5e-34 | LINC00342 | ? | |
| rs1332844 | 3e-33 | PHACTR1 | ? | |
| rs2052692 | 5e-31 | IRAG1 | ? | |
| rs1925950 | 3e-30 | MEF2D | A | 0.94 |
| chr12:57132863 | 3e-30 | A | 0.11 | |
| rs4814864 | 1e-28 | SLC24A3 | C | 1.07 |
| chr1:3155918 | 1e-28 | A | 0.12 | |
| rs1075550 | 2e-28 | FGF23 - FGF6 | T | 0.94 |
| rs10234636 | 4e-28 | SUGCT | T | 1.09 |
| rs1048483 | 5e-28 | SMG6, HIC1 | ? | |
| rs2075968 | 9e-28 | PRDM16 | ? | 1.1 |
| rs67338227 | 2e-27 | FHL5 | T | 1.09 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST90281112 | Islam MR | 2023 | 102,084 | 771,257 | Cross-trait analyses identify shared genetics between migraine, headache, and glycemic traits, and a causal relationship with fasting proinsulin. |
| GCST90281113 | Islam MR | 2023 | 102,084 | 771,257 | Cross-trait analyses identify shared genetics between migraine, headache, and glycemic traits, and a causal relationship with fasting proinsulin. |
| GCST90281114 | Islam MR | 2023 | 102,084 | 771,257 | Cross-trait analyses identify shared genetics between migraine, headache, and glycemic traits, and a causal relationship with fasting proinsulin. |
| GCST90281115 | Islam MR | 2023 | 102,084 | 771,257 | Cross-trait analyses identify shared genetics between migraine, headache, and glycemic traits, and a causal relationship with fasting proinsulin. |
| GCST90281116 | Islam MR | 2023 | 102,084 | 771,257 | Cross-trait analyses identify shared genetics between migraine, headache, and glycemic traits, and a causal relationship with fasting proinsulin. |
| GCST90281117 | Islam MR | 2023 | 102,084 | 771,257 | Cross-trait analyses identify shared genetics between migraine, headache, and glycemic traits, and a causal relationship with fasting proinsulin. |
| GCST90281118 | Islam MR | 2023 | 102,084 | 771,257 | Cross-trait analyses identify shared genetics between migraine, headache, and glycemic traits, and a causal relationship with fasting proinsulin. |
| GCST90102553 | Hautakangas H | 2022 | 102,084 | 771,257 | Genome-wide analysis of 102,084 migraine cases identifies 123 risk loci and subtype-specific risk alleles. |
| GCST90429186 | Choquet H | 2021 | 85,726 | 803,292 | New and sex-specific migraine susceptibility loci identified from a multiethnic genome-wide meta-analysis. |
| GCST90244660 | Islam MR | 2022 | 74,124 | 1,595,263 | Genetic Overlap Analysis Identifies a Shared Etiology between Migraine and Headache with Type 2 Diabetes. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 2 |
| Tier 2: splice/UTR | 2 |
| Tier 3: regulatory | 1 |
| Tier 4: intronic/intergenic | 45 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 48 |
| low_freq (0.01-0.05) | 0 |
| rare (<0.01) | 0 |
| unknown | 2 |
Functional consequences
| Consequence | Count |
|---|---|
| intron_variant | 37 |
| intergenic_variant | 5 |
| missense_variant | 2 |
| unknown | 2 |
| regulatory_region_variant | 1 |
| 3_prime_UTR_variant | 1 |
| splice_polypyrimidine_tract_variant | 1 |
| non_coding_transcript_exon_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| rs11172113 | 12 | 57133500 | T>C,G | 0.415 | intron_variant | LRP1 | 1e-90 | Tier 4: intronic/intergenic |
| rs57866767 | 10 | 94263320 | T>C,G | 0.05 | intron_variant | PLCE1 | 7e-71 | Tier 4: intronic/intergenic |
| rs10218452 | 1 | 3159033 | A>G | 0.229 | intron_variant | PRDM16 | 7e-71 | Tier 4: intronic/intergenic |
| rs11153082 | 6 | 96611790 | A>C,G | 0.331 | intron_variant | FHL5 | 7e-54 | Tier 4: intronic/intergenic |
| rs6035355 | 20 | 19484445 | T>A,C | 0.05 | intron_variant | SLC24A3 | 9e-54 | Tier 4: intronic/intergenic |
| rs10166942 | 2 | 233916448 | T>A,C | 0.195 | intergenic_variant | MSL3B - TRPM8 | 9e-51 | Tier 4: intronic/intergenic |
| rs9349379 | 6 | 12903725 | A>C,G,T | 0.41 | intron_variant | PHACTR1 | 1e-47 | Tier 4: intronic/intergenic |
| rs3001426 | 12 | 57115272 | T>C | 0.05 | intergenic_variant | STAT6 | 4e-42 | Tier 4: intronic/intergenic |
| rs2078371 | 1 | 115134562 | T>A,C,G | 0.117 | intergenic_variant | LINC01765 - NGF-AS1 | 6e-42 | Tier 4: intronic/intergenic |
| rs4888408 | 16 | 75398926 | G>A,C,T | 0.05 | intron_variant | CFDP1 | 1e-41 | Tier 4: intronic/intergenic |
| rs17171710 | 7 | 40400634 | C>T | 0.05 | intron_variant | SUGCT | 3e-41 | Tier 4: intronic/intergenic |
| rs2274319 | 1 | 156481081 | T>C | 0.347 | intron_variant | MEF2D | 3e-41 | Tier 4: intronic/intergenic |
| rs9486715 | 6 | 96611893 | A>C,T | 0.05 | intron_variant | FHL5 | 7e-39 | Tier 4: intronic/intergenic |
| rs2983896 | 6 | 96581995 | G>A | 0.05 | intron_variant | FHL5 | 2e-37 | Tier 4: intronic/intergenic |
| rs7968719 | 12 | 57146968 | C>G | 0.05 | intron_variant | LRP1, LRP1-AS | 9e-37 | Tier 4: intronic/intergenic |
| rs2160875 | 12 | 4418156 | C>T | 0.477 | intron_variant | FGF23 - FGF6 | 3e-36 | Tier 4: intronic/intergenic |
| rs12134493 | 1 | 115135325 | C>A | 0.12 | regulatory_region_variant | LINC01765 - NGF-AS1 | 6e-36 | Tier 3: regulatory |
| rs2971603 | 6 | 96587542 | C>G,T | 0.05 | intron_variant | FHL5 | 2e-35 | Tier 4: intronic/intergenic |
| rs62155750 | 2 | 95825708 | A>G | 0.05 | intron_variant | LINC00342 | 5e-34 | Tier 4: intronic/intergenic |
| rs1332844 | 6 | 12888772 | C>T | 0.05 | intron_variant | PHACTR1 | 3e-33 | Tier 4: intronic/intergenic |
| rs2052692 | 11 | 10646094 | A>C,G | 0.05 | intron_variant | IRAG1 | 5e-31 | Tier 4: intronic/intergenic |
| rs1925950 | 1 | 156480948 | G>A,C | 0.35 | missense_variant | MEF2D | 3e-30 | Tier 1: coding |
| chr12:57132863 | 3e-30 | Tier 4: intronic/intergenic | ||||||
| rs4814864 | 20 | 19489173 | G>A,C,T | 0.254 | intron_variant | SLC24A3 | 1e-28 | Tier 4: intronic/intergenic |
| chr1:3155918 | 1e-28 | Tier 4: intronic/intergenic | ||||||
| rs1075550 | 12 | 4417341 | C>A,T | 0.48 | intron_variant | FGF23 - FGF6 | 2e-28 | Tier 4: intronic/intergenic |
| rs10234636 | 7 | 40388018 | T>C,G | 0.111 | intron_variant | SUGCT | 4e-28 | Tier 4: intronic/intergenic |
| rs1048483 | 17 | 2063163 | C>T | 0.05 | 3_prime_UTR_variant | SMG6, HIC1 | 5e-28 | Tier 2: splice/UTR |
| rs2075968 | 1 | 3164677 | C>T | 0.05 | intron_variant | PRDM16 | 9e-28 | Tier 4: intronic/intergenic |
| rs67338227 | 6 | 96594271 | A>C,G,T | 0.23 | intron_variant | FHL5 | 2e-27 | Tier 4: intronic/intergenic |
ClinVar germline variants
17 retrieved; paginated sample, class counts are floors:
5 uncertain significance, 4 pathogenic, 3 conflicting classifications of pathogenicity, 3 pathogenic/likely pathogenic, 2 likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 195935 | NM_001127222.2(CACNA1A):c.4174G>A (p.Val1392Met) | CACNA1A | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 17621 | NM_000070.3(CAPN3):c.550del (p.Thr184fs) | CAPN3 | Pathogenic | reviewed by expert panel |
| 92408 | NM_000070.3(CAPN3):c.1746-20C>G | CAPN3 | Pathogenic | reviewed by expert panel |
| 17542 | NM_000083.3(CLCN1):c.950G>A (p.Arg317Gln) | CLCN1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 373443 | NM_001292034.3(TAB2):c.1039C>T (p.Arg347Ter) | LOC126859827 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 812745 | NM_000435.3(NOTCH3):c.634T>C (p.Cys212Arg) | NOTCH3 | Pathogenic | no assertion criteria provided |
| 523355 | NM_001122764.3(PPOX):c.1353T>G (p.Tyr451Ter) | PPOX | Pathogenic | criteria provided, single submitter |
| 9733 | NC_012920.1(MT-ND1):m.3697G>A | MT-ND1 | Likely pathogenic | reviewed by expert panel |
| 523370 | NM_000435.3(NOTCH3):c.1450T>G (p.Cys484Gly) | NOTCH3 | Likely pathogenic | criteria provided, single submitter |
| 44926 | NM_004415.4(DSP):c.5218G>A (p.Glu1740Lys) | DSP | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 14149 | NM_002471.4(MYH6):c.3195G>C (p.Gln1065His) | MYH6 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 239175 | NM_002471.4(MYH6):c.4594C>T (p.Arg1532Cys) | MYH6 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 983126 | NM_138420.4(AHNAK2):c.6406_6408delinsGAC (p.Gln2136Asp) | AHNAK2 | Uncertain significance | criteria provided, single submitter |
| 523536 | NM_030662.4(MAP2K2):c.514A>G (p.Lys172Glu) | MAP2K2 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 9387 | NM_000335.5(SCN5A):c.892G>A (p.Gly298Ser) | SCN5A | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 374095 | NM_006516.4(SLC2A1):c.1407G>C (p.Gln469His) | SLC2A1 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 523431 | NM_001382567.1(STIM1):c.1627T>A (p.Ser543Thr) | STIM1 | Uncertain significance | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 93 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| SCN5A | Orphanet:101016 | Romano-Ward syndrome |
| SCN5A | Orphanet:130 | Brugada syndrome |
| SCN5A | Orphanet:1344 | Isolated atrial standstill |
| SCN5A | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| SCN5A | Orphanet:166282 | Hereditary sick sinus syndrome |
| SCN5A | Orphanet:228140 | Idiopathic ventricular fibrillation |
| SCN5A | Orphanet:334 | Hereditary atrial fibrillation |
| SCN5A | Orphanet:871 | Hereditary progressive cardiac conduction defect |
| SLC2A1 | Orphanet:168577 | Hereditary cryohydrocytosis with reduced stomatin |
| SLC2A1 | Orphanet:1942 | Epilepsy with myoclonic-atonic seizures |
| SLC2A1 | Orphanet:2131 | Alternating hemiplegia of childhood |
| SLC2A1 | Orphanet:53583 | Paroxysmal dystonic choreathetosis with episodic ataxia and spasticity |
| SLC2A1 | Orphanet:71277 | Classic glucose transporter type 1 deficiency syndrome |
| SLC2A1 | Orphanet:86911 | Epilepsy with myoclonic absences |
| SLC2A1 | Orphanet:98811 | Paroxysmal exertion-induced dyskinesia |
| SPINK2 | Orphanet:399805 | Male infertility with azoospermia or oligozoospermia due to single gene mutation |
| STAT6 | Orphanet:2126 | Solitary fibrous tumor |
| STIM1 | Orphanet:2593 | Tubular aggregate myopathy |
| STIM1 | Orphanet:317430 | Combined immunodeficiency due to STIM1 deficiency |
| STIM1 | Orphanet:3204 | Stormorken-Sjaastad-Langslet syndrome |
| TGFBR2 | Orphanet:144 | Lynch syndrome |
| TGFBR2 | Orphanet:284973 | Marfan syndrome type 2 |
| TGFBR2 | Orphanet:60030 | Loeys-Dietz syndrome |
| TGFBR2 | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| TGFBR2 | Orphanet:99977 | Squamous cell carcinoma of the esophagus |
| TSC1 | Orphanet:210159 | Adult hepatocellular carcinoma |
| TSC1 | Orphanet:269008 | Isolated focal cortical dysplasia type IIb |
| TSC1 | Orphanet:538 | Lymphangioleiomyomatosis |
| TSC1 | Orphanet:805 | Tuberous sclerosis complex |
| USP9X | Orphanet:480880 | X-linked female restricted facial dysmorphism-short stature-choanal atresia-intellectual disability |
| USP9X | Orphanet:777 | X-linked non-syndromic intellectual disability |
| CACNA1A | Orphanet:2131 | Alternating hemiplegia of childhood |
| CACNA1A | Orphanet:2382 | Lennox-Gastaut syndrome |
| CACNA1A | Orphanet:442835 | Non-specific early-onset epileptic encephalopathy |
| CACNA1A | Orphanet:569 | Familial or sporadic hemiplegic migraine |
| CACNA1A | Orphanet:71518 | Benign paroxysmal torticollis of infancy |
| CACNA1A | Orphanet:97 | Familial paroxysmal ataxia |
| CACNA1A | Orphanet:98758 | Spinocerebellar ataxia type 6 |
| PRDM16 | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| PRDM16 | Orphanet:1606 | 1p36 deletion syndrome |
| PRDM16 | Orphanet:54260 | Left ventricular noncompaction |
| JPH3 | Orphanet:98934 | Huntington disease-like 2 |
| NLRP1 | Orphanet:352662 | Corneal intraepithelial dyskeratosis-palmoplantar hyperkeratosis-laryngeal dyskeratosis syndrome |
| RNF213 | Orphanet:2573 | Moyamoya disease |
| CAPN3 | Orphanet:267 | Calpain-3-related limb-girdle muscular dystrophy R1 |
| CAPN3 | Orphanet:565909 | Calpain-3-related limb-girdle muscular dystrophy D4 |
| SUGCT | Orphanet:35706 | Glutaric acidemia type 3 |
| YAP1 | Orphanet:1473 | Uveal coloboma-cleft lip and palate-intellectual disability |
| YAP1 | Orphanet:157791 | Epithelioid hemangioendothelioma |
| CTR9 | Orphanet:528084 | Non-specific syndromic intellectual disability |
Cohort genes → proteins
75 cohort genes, 75 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 66 |
| multi_evidence | 9 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| SCN5A | HGNC:10593 | ENSG00000183873 | Q14524 | Sodium channel protein type 5 subunit alpha | clinvar |
| SLC24A3 | HGNC:10977 | ENSG00000185052 | Q9HC58 | Sodium/potassium/calcium exchanger 3 | gwas |
| SLC2A1 | HGNC:11005 | ENSG00000117394 | P11166 | Solute carrier family 2, facilitated glucose transporter member 1 | clinvar |
| SPINK2 | HGNC:11245 | ENSG00000128040 | P20155 | Serine protease inhibitor Kazal-type 2 | gwas |
| STAT6 | HGNC:11368 | ENSG00000166888 | P42226 | Signal transducer and activator of transcription 6 | gwas |
| STIM1 | HGNC:11386 | ENSG00000167323 | Q13586 | Stromal interaction molecule 1 | clinvar |
| TGFBR2 | HGNC:11773 | ENSG00000163513 | P37173 | TGF-beta receptor type-2 | gwas |
| MPPED2 | HGNC:1180 | ENSG00000066382 | Q15777 | Metallophosphoesterase MPPED2 | gwas |
| TSC1 | HGNC:12362 | ENSG00000165699 | Q92574 | Hamartin | gwas |
| USP9X | HGNC:12632 | ENSG00000124486 | Q93008 | Ubiquitin carboxyl-terminal hydrolase 9X | gwas |
| CACNA1A | HGNC:1388 | ENSG00000141837 | O00555 | Voltage-dependent P/Q-type calcium channel subunit alpha-1A | clinvar |
| PRDM16 | HGNC:14000 | ENSG00000142611 | Q9HAZ2 | Histone-lysine N-methyltransferase PRDM16 | gwas |
| JPH3 | HGNC:14203 | ENSG00000154118 | Q8WXH2 | Junctophilin-3 | gwas |
| NLRP1 | HGNC:14374 | ENSG00000091592 | Q9C000 | NACHT, LRR and PYD domains-containing protein 1 | gwas |
| CARF | HGNC:14435 | ENSG00000138380 | Q8N187 | Calcium-responsive transcription factor | gwas |
| RNF213 | HGNC:14539 | ENSG00000173821 | Q63HN8 | E3 ubiquitin-protein ligase RNF213 | gwas |
| IMMP2L | HGNC:14598 | ENSG00000184903 | Q96T52 | Mitochondrial inner membrane protease subunit 2 | gwas |
| CAPN3 | HGNC:1480 | ENSG00000092529 | P20807 | Calpain-3 | clinvar |
| SUGCT | HGNC:16001 | ENSG00000175600 | Q9HAC7 | Succinyl-CoA:glutarate CoA-transferase | gwas |
| CCM2L | HGNC:16153 | ENSG00000101331 | Q9NUG4 | Cerebral cavernous malformations 2 protein-like | gwas |
| YAP1 | HGNC:16262 | ENSG00000137693 | P46937 | Transcriptional coactivator YAP1 | gwas |
| MOAP1 | HGNC:16658 | ENSG00000165943 | Q96BY2 | Modulator of apoptosis 1 | gwas |
| CTR9 | HGNC:16850 | ENSG00000198730 | Q6PD62 | RNA polymerase-associated protein CTR9 homolog | gwas |
| CPQ | HGNC:16910 | ENSG00000104324 | Q9Y646 | Carboxypeptidase Q | gwas |
| ASTN2 | HGNC:17021 | ENSG00000148219 | O75129 | Astrotactin-2 | gwas |
| PLCE1 | HGNC:17175 | ENSG00000138193 | Q9P212 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 | gwas |
| FHL5 | HGNC:17371 | ENSG00000112214 | Q5TD97 | Four and a half LIM domains protein 5 | gwas |
| MSL3B | HGNC:17837 | ENSG00000224287 | P0C860 | MSL complex subunit 3B | gwas |
| TRPM8 | HGNC:17961 | ENSG00000144481 | Q7Z2W7 | Transient receptor potential cation channel subfamily M member 8 | gwas |
| HPSE2 | HGNC:18374 | ENSG00000172987 | Q8WWQ2 | Inactive heparanase-2 | gwas |
| NAXE | HGNC:18453 | ENSG00000163382 | Q8NCW5 | NAD(P)H-hydrate epimerase | gwas |
| CFDP1 | HGNC:1873 | ENSG00000153774 | Q9UEE9 | Heterochromatin-stabilizing protein CFDP1 | gwas |
| DOCK4 | HGNC:19192 | ENSG00000128512 | Q8N1I0 | Dedicator of cytokinesis protein 4 | gwas |
| ADAMTSL4 | HGNC:19706 | ENSG00000143382 | Q6UY14 | ADAMTS-like protein 4 | gwas |
| AHNAK2 | HGNC:20125 | ENSG00000185567 | Q8IVF2 | Protein AHNAK2 | clinvar |
| CLCN1 | HGNC:2019 | ENSG00000188037 | P35523 | Chloride channel protein 1 | clinvar |
| TSPAN2 | HGNC:20659 | ENSG00000134198 | O60636 | Tetraspanin-2 | gwas |
| PHACTR1 | HGNC:20990 | ENSG00000112137 | Q9C0D0 | Phosphatase and actin regulator 1 | gwas |
| TBC1D7 | HGNC:21066 | ENSG00000145979 | Q9P0N9 | TBC1 domain family member 7 | gwas |
| NCOA7 | HGNC:21081 | ENSG00000111912 | Q8NI08 | Nuclear receptor coactivator 7 | gwas |
| LINGO2 | HGNC:21207 | ENSG00000174482 | Q7L985 | Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2 | gwas |
| UFL1 | HGNC:23039 | ENSG00000014123 | O94874 | E3 UFM1-protein ligase 1 | gwas |
| GPR149 | HGNC:23627 | ENSG00000174948 | Q86SP6 | Probable G-protein coupled receptor 149 | gwas |
| MED14 | HGNC:2370 | ENSG00000180182 | O60244 | Mediator of RNA polymerase II transcription subunit 14 | gwas |
| ZCCHC14 | HGNC:24134 | ENSG00000140948 | Q8WYQ9 | Zinc finger CCHC domain-containing protein 14 | gwas |
| CDKN2AIP | HGNC:24325 | ENSG00000168564 | Q9NXV6 | CDKN2A-interacting protein | gwas |
| HJURP | HGNC:25444 | ENSG00000123485 | Q8NCD3 | Holliday junction recognition protein | gwas |
| AGBL1 | HGNC:26504 | ENSG00000273540 | Q96MI9 | Cytosolic carboxypeptidase 4 | gwas |
| LRRIQ3 | HGNC:28318 | ENSG00000162620 | A6PVS8 | Leucine-rich repeat and IQ domain-containing protein 3 | gwas |
| WSCD1 | HGNC:29060 | ENSG00000179314 | Q658N2 | Sialate:O-sulfotransferase 1 | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| SCN5A | Sodium channel protein type 5 subunit alpha | Pore-forming subunit of Nav1.5, a voltage-gated sodium (Nav) channel that directly mediates the depolarizing phase of action potentials in excitable membranes. |
| SLC24A3 | Sodium/potassium/calcium exchanger 3 | Calcium, potassium:sodium antiporter that transports 1 Ca(2+) and 1 K(+) in exchange for 4 Na(+). |
| SLC2A1 | Solute carrier family 2, facilitated glucose transporter member 1 | Facilitative glucose transporter, which is responsible for constitutive or basal glucose uptake. |
| SPINK2 | Serine protease inhibitor Kazal-type 2 | As a strong inhibitor of acrosin, it is required for normal spermiogenesis. |
| STAT6 | Signal transducer and activator of transcription 6 | Carries out a dual function: signal transduction and activation of transcription. |
| STIM1 | Stromal interaction molecule 1 | Acts as a Ca(2+) sensor that gates two major inward rectifying Ca(2+) channels at the plasma membrane: Ca(2+) release-activated Ca(2+) (CRAC) channels and arachidonate-regulated Ca(2+)-selective (ARC) channels. |
| TGFBR2 | TGF-beta receptor type-2 | Transmembrane serine/threonine kinase forming with the TGF-beta type I serine/threonine kinase receptor, TGFBR1, the non-promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. |
| MPPED2 | Metallophosphoesterase MPPED2 | Displays low metallophosphoesterase activity (in vitro). |
| TSC1 | Hamartin | Non-catalytic component of the TSC-TBC complex, a multiprotein complex that acts as a negative regulator of the canonical mTORC1 complex, an evolutionarily conserved central nutrient sensor that stimulates anabolic reactions and macromolec… |
| USP9X | Ubiquitin carboxyl-terminal hydrolase 9X | Deubiquitinase involved both in the processing of ubiquitin precursors and of ubiquitinated proteins. |
| CACNA1A | Voltage-dependent P/Q-type calcium channel subunit alpha-1A | Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene exp… |
| PRDM16 | Histone-lysine N-methyltransferase PRDM16 | Transcription regulator that acts both as a histone methyltransferase or chromatin adapter, depending on the context. |
| JPH3 | Junctophilin-3 | Junctophilins contribute to the formation of junctional membrane complexes (JMCs) which link the plasma membrane with the endoplasmic or sarcoplasmic reticulum in excitable cells. |
| NLRP1 | NACHT, LRR and PYD domains-containing protein 1 | Acts as the sensor component of the NLRP1 inflammasome, which mediates inflammasome activation in response to various pathogen-associated signals, leading to subsequent pyroptosis. |
| CARF | Calcium-responsive transcription factor | Acts as a transcriptional activator that mediates the calcium- and neuron-selective induction of BDNF exon III transcription. |
| RNF213 | E3 ubiquitin-protein ligase RNF213 | Atypical E3 ubiquitin ligase that can catalyze ubiquitination of both proteins and lipids, and which is involved in various processes, such as lipid metabolism, angiogenesis and cell-autonomous immunity. |
| IMMP2L | Mitochondrial inner membrane protease subunit 2 | Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. |
| CAPN3 | Calpain-3 | Calcium-regulated non-lysosomal thiol-protease. |
| SUGCT | Succinyl-CoA:glutarate CoA-transferase | Coenzyme A (CoA) transferase that reversibly catalyzes the transfer of a CoA moiety from a dicarboxyl-CoA to a dicarboxylate in a metabolite recycling process. |
| YAP1 | Transcriptional coactivator YAP1 | Transcriptional regulator with dual roles as a coactivator and corepressor. |
| MOAP1 | Modulator of apoptosis 1 | Retrotransposon-derived protein that forms virion-like capsids. |
| CTR9 | RNA polymerase-associated protein CTR9 homolog | Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. |
| CPQ | Carboxypeptidase Q | Carboxypeptidase that may play an important role in the hydrolysis of circulating peptides. |
| ASTN2 | Astrotactin-2 | Mediates recycling of the neuronal cell adhesion molecule ASTN1 to the anterior pole of the cell membrane in migrating neurons. |
| PLCE1 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 | The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. |
| FHL5 | Four and a half LIM domains protein 5 | May be involved in the regulation of spermatogenesis. |
| MSL3B | MSL complex subunit 3B | Probable non-catalytic component of the MSL histone acetyltransferase complex, a multiprotein complex that mediates the majority of histone H4 acetylation at ‘Lys-16’ (H4K16ac), an epigenetic mark that prevents chromatin compaction. |
| TRPM8 | Transient receptor potential cation channel subfamily M member 8 | Non-selective ion channel permeable to monovalent and divalent cations, including Na(+), K(+), and Ca(2+), with higher permeability for Ca(2+). |
| HPSE2 | Inactive heparanase-2 | Binds heparin and heparan sulfate with high affinity, but lacks heparanase activity. |
| NAXE | NAD(P)H-hydrate epimerase | Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. |
| CFDP1 | Heterochromatin-stabilizing protein CFDP1 | Required for the structural stability of pericentromeric heterochromatin. |
| DOCK4 | Dedicator of cytokinesis protein 4 | Functions as a guanine nucleotide exchange factor (GEF) that promotes the exchange of GDP to GTP, converting inactive GDP-bound small GTPases into their active GTP-bound form. |
| ADAMTSL4 | ADAMTS-like protein 4 | Positive regulation of apoptosis. |
| CLCN1 | Chloride channel protein 1 | Voltage-gated chloride channel involved in skeletal muscle excitability. |
| TSPAN2 | Tetraspanin-2 | May play a role in signalling in oligodendrocytes in the early stages of their terminal differentiation into myelin-forming glia and may also function in stabilizing the mature sheath. |
| PHACTR1 | Phosphatase and actin regulator 1 | Binds actin monomers (G actin) and plays a role in multiple processes including the regulation of actin cytoskeleton dynamics, actin stress fibers formation, cell motility and survival, formation of tubules by endothelial cells, and regula… |
| TBC1D7 | TBC1 domain family member 7 | Non-catalytic component of the TSC-TBC complex, a multiprotein complex that acts as a negative regulator of the canonical mTORC1 complex, an evolutionarily conserved central nutrient sensor that stimulates anabolic reactions and macromolec… |
| NCOA7 | Nuclear receptor coactivator 7 | Enhances the transcriptional activities of several nuclear receptors. |
| UFL1 | E3 UFM1-protein ligase 1 | E3 protein ligase that mediates ufmylation, the covalent attachment of the ubiquitin-like modifier UFM1 to lysine residues on target proteins, and which plays a key role in various processes, such as ribosome recycling, response to DNA dam… |
| GPR149 | Probable G-protein coupled receptor 149 | Orphan receptor. |
| MED14 | Mediator of RNA polymerase II transcription subunit 14 | Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. |
| CDKN2AIP | CDKN2A-interacting protein | Regulates DNA damage response in a dose-dependent manner through a number of signaling pathways involved in cell proliferation, apoptosis and senescence. |
| HJURP | Holliday junction recognition protein | Centromeric protein that plays a central role in the incorporation and maintenance of histone H3-like variant CENPA at centromeres. |
| AGBL1 | Cytosolic carboxypeptidase 4 | Metallocarboxypeptidase that mediates deglutamylation of tubulin and non-tubulin target proteins. |
| WSCD1 | Sialate:O-sulfotransferase 1 | Sialate:O-sulfotransferase which catalyzes 8-O-sulfation at the Sia-glycan level using 3’-phosphoadenosine 5’-phosphosulfate (PAPS) as a donor, forming 8-O-sulfated Sia (Sia8S)-glycans. |
| MARCHF4 | E3 ubiquitin-protein ligase MARCHF4 | E3 ubiquitin-protein ligase that may mediate ubiquitination of MHC-I and CD4, and promote their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. |
| MTDH | Protein LYRIC | Down-regulates SLC1A2/EAAT2 promoter activity when expressed ectopically. |
| SDR9C7 | Short-chain dehydrogenase/reductase family 9C member 7 | Plays a crucial role in the formation of the epidermal permeability barrier. |
| DSP | Desmoplakin | A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. |
| AJAP1 | Adherens junction-associated protein 1 | Plays a role in cell adhesion and cell migration. |
Protein-family classification
Druggable: 25 · Difficult: 11 · Unknown: 39 · Druggable fraction: 0.33
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Ion channel | 4 | 6.0× | 0.051 |
| Protease | 5 | 2.4× | 0.298 |
| Complement | 1 | 3.6× | 0.786 |
| Kinase | 4 | 1.5× | 0.786 |
| Antibody/Immunoglobulin | 3 | 1.2× | 0.876 |
| Transporter | 1 | 1.0× | 0.876 |
| Enzyme (other) | 6 | 1.0× | 0.876 |
| Scaffold/PPI | 4 | 0.9× | 0.876 |
| Other/Unknown | 39 | 0.9× | 0.901 |
| Transcription factor | 7 | 0.8× | 0.901 |
| GPCR | 1 | 0.3× | 0.960 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| SCN5A | Ion channel | yes | Na_channel_asu, Ion_trans_dom, Na_channel_a5su | |
| SLC24A3 | Other/Unknown | no | K/Na/Ca-exchanger, NaCa_Exmemb, NCX_ion-bd_dom_sf | |
| SLC2A1 | Transporter | yes | Glu_transpt_1, Sugar/inositol_transpt, MFS_sugar_transport-like | |
| SPINK2 | Other/Unknown | no | Kazal_dom, Kazal_dom_sf, SPINK2 | |
| STAT6 | Transcription factor | no | SH2, STAT, p53-like_TF_DNA-bd_sf | |
| STIM1 | Other/Unknown | no | SAM, SAM/pointed_sf, SOAR_STIM1/2 | |
| TGFBR2 | Kinase | yes | 2.7.10.2 | TGFB_receptor, Prot_kinase_dom, Ser-Thr/Tyr_kinase_cat_dom |
| MPPED2 | Other/Unknown | no | Calcineurin-like_PHP, Calcineurin-like_Pesterase, Metallo-depent_PP-like | |
| TSC1 | Other/Unknown | no | Hamartin | |
| USP9X | Protease | yes | Peptidase_C19_UCH, ARM-type_fold, USP_CS | |
| CACNA1A | Ion channel | yes | VDCCAlpha1, CACNA1A, Ion_trans_dom | |
| PRDM16 | Transcription factor | no | 2.1.1.367 | SET_dom, Znf_C2H2_type, Znf_C2H2_sf |
| JPH3 | Other/Unknown | no | MORN, Junctophilin | |
| NLRP1 | Other/Unknown | no | CARD, Leu-rich_rpt, DAPIN | |
| CARF | Other/Unknown | no | CaRF | |
| RNF213 | Transcription factor | no | Znf_RING, AAA+_ATPase, Znf_RING/FYVE/PHD | |
| IMMP2L | Protease | yes | Pept_S26A_signal_pept_1, Peptidase_S26, Pept_S26A_signal_pept_1_CS | |
| CAPN3 | Protease | yes | 3.4.22.54 | Pept_cys_AS, Peptidase_C2_calpain_cat, EF_hand_dom |
| SUGCT | Enzyme (other) | yes | 2.8.3.13 | CoA-Trfase_fam_III, CoA-Trfase_III_dom_1_sf, CoA-Trfase_III_dom3_sf |
| CCM2L | Other/Unknown | no | PH-like_dom_sf, Malcavernin, CCM2_C | |
| YAP1 | Scaffold/PPI | no | WW_dom, WW_dom_sf, YAP1 | |
| MOAP1 | Other/Unknown | no | PNMA, PNMA_C, PNMA_N | |
| CTR9 | Other/Unknown | no | TPR-like_helical_dom_sf, TPR_rpt, Ctr9 | |
| CPQ | Protease | yes | Peptidase_M28, CPQ | |
| ASTN2 | Complement | yes | MACPF, Astrotactin, FN3_sf | |
| PLCE1 | Enzyme (other) | yes | 3.1.4.11 | C2_dom, RA_dom, PLipase_C_PInositol-sp_X_dom |
| FHL5 | Transcription factor | no | Znf_LIM, FHL5_LIM2, LIM_FHL1/2/3/5_N | |
| MSL3B | Other/Unknown | no | MRG, MRG_dom, MRG_C_sf | |
| TRPM8 | Ion channel | yes | Ion_trans_dom, TRPM_SLOG, TRPM | |
| HPSE2 | Other/Unknown | no | Glyco_hydro_79, GH_hydrolase_sf | |
| NAXE | Enzyme (other) | yes | 5.1.99.6 | YjeF_N_dom, YJEFN_prot_NAXE-like, YjeF_N_dom_sf |
| CFDP1 | Other/Unknown | no | BCNT-C, Swc5/CFDP1/2 | |
| DOCK4 | Scaffold/PPI | no | SH3_domain, DOCK, C2_DOCK-type_domain | |
| ADAMTSL4 | Other/Unknown | no | TSP1_rpt, ADAMTS_spacer1, PLAC | |
| AHNAK2 | Scaffold/PPI | no | PDZ, PDZ_sf, Myelin_sheath_structural | |
| CLCN1 | Other/Unknown | no | ClC, Cl_channel-1, Cl-channel_core | |
| TSPAN2 | Other/Unknown | no | Tetraspanin_animals, Tetraspanin_EC2_sf, Tetraspanin/Peripherin | |
| PHACTR1 | Other/Unknown | no | RPEL_repeat | |
| TBC1D7 | Other/Unknown | no | Rab-GAP-TBC_dom, Rab-GAP_TBC_sf, TBC1D7 | |
| NCOA7 | Other/Unknown | no | TLDc_dom, LysM, LysM_dom_sf | |
| LINGO2 | Antibody/Immunoglobulin | yes | LRRNT, Leu-rich_rpt, Leu-rich_rpt_typical-subtyp | |
| UFL1 | Other/Unknown | no | Ufl1, Ufl1_N, Ufl1_dom | |
| GPR149 | GPCR | yes | GPCR_Rhodpsn_7TM | |
| MED14 | Other/Unknown | no | Mediator_Med14, Med14_RM8, Med14_RM2 | |
| ZCCHC14 | Transcription factor | no | SAM, Znf_CCHC, SAM/pointed_sf | |
| CDKN2AIP | Other/Unknown | no | dsRBD_dom, XTBD, DSRM_CARF/NKRF | |
| HJURP | Other/Unknown | no | Scm3/HJURP, HJURP_central_dom, HJURP_C | |
| AGBL1 | Protease | yes | Peptidase_M14, ARM-like, ARM-type_fold | |
| LRRIQ3 | Other/Unknown | no | Leu-rich_rpt, LRR_dom_sf, LRR-IQ_domain_protein | |
| WSCD1 | Other/Unknown | no | Sulfotransferase_dom, WSC_carb-bd, P-loop_NTPase |
Expression context
Cohort genes with no expression data: 0.
63 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 75 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| secondary oocyte | 8 |
| cortical plate | 6 |
| calcaneal tendon | 6 |
| male germ line stem cell (sensu Vertebrata) in testis | 6 |
| oocyte | 6 |
| hindlimb stylopod muscle | 5 |
| primordial germ cell in gonad | 5 |
| ganglionic eminence | 4 |
| ventricular zone | 4 |
| apex of heart | 3 |
| lateral nuclear group of thalamus | 3 |
| saphenous vein | 3 |
| sural nerve | 3 |
| corpus epididymis | 3 |
| granulocyte | 3 |
| lateral globus pallidus | 3 |
| popliteal artery | 3 |
| upper leg skin | 3 |
| hair follicle | 3 |
| skin of abdomen | 2 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| SCN5A | 161 | broad | yes | apex of heart, heart left ventricle, cardiac ventricle |
| SLC24A3 | 272 | broad | marker | lateral nuclear group of thalamus, tongue squamous epithelium, saphenous vein |
| SLC2A1 | 250 | ubiquitous | marker | tibial nerve, sural nerve, skin of abdomen |
| SPINK2 | 177 | broad | marker | corpus epididymis, cauda epididymis, seminal vesicle |
| STAT6 | 292 | ubiquitous | marker | granulocyte, right ovary, left ovary |
| STIM1 | 237 | ubiquitous | marker | gastrocnemius, muscle of leg, hindlimb stylopod muscle |
| TGFBR2 | 289 | ubiquitous | marker | pericardium, tibia, parietal pleura |
| MPPED2 | 255 | broad | marker | ventricular zone, ganglionic eminence, cortical plate |
| TSC1 | 297 | ubiquitous | marker | substantia nigra pars compacta, gluteal muscle, lateral globus pallidus |
| USP9X | 295 | ubiquitous | marker | middle frontal gyrus, endometrium epithelium, secondary oocyte |
| CACNA1A | 237 | broad | marker | cerebellar hemisphere, right hemisphere of cerebellum, cerebellar cortex |
| PRDM16 | 202 | broad | marker | sural nerve, pigmented layer of retina, ascending aorta |
| JPH3 | 166 | broad | yes | right frontal lobe, postcentral gyrus, parietal lobe |
| NLRP1 | 203 | ubiquitous | marker | granulocyte, monocyte, mononuclear cell |
| CARF | 215 | ubiquitous | yes | calcaneal tendon, male germ line stem cell (sensu Vertebrata) in testis, primordial germ cell in gonad |
| RNF213 | 252 | ubiquitous | marker | granulocyte, metanephros cortex, pancreatic ductal cell |
| IMMP2L | 223 | ubiquitous | marker | tibialis anterior, deltoid, calcaneal tendon |
| CAPN3 | 134 | broad | marker | hindlimb stylopod muscle, skeletal muscle tissue, C1 segment of cervical spinal cord |
| SUGCT | 191 | ubiquitous | marker | right adrenal gland cortex, oocyte, right coronary artery |
| CCM2L | 207 | broad | marker | spleen, apex of heart, oocyte |
| YAP1 | 279 | ubiquitous | marker | saphenous vein, germinal epithelium of ovary, cauda epididymis |
| MOAP1 | 142 | ubiquitous | marker | superior frontal gyrus, prefrontal cortex, frontal cortex |
| CTR9 | 292 | ubiquitous | marker | corpus epididymis, epithelium of nasopharynx, palpebral conjunctiva |
| CPQ | 293 | ubiquitous | marker | left lobe of thyroid gland, thyroid gland, right lobe of thyroid gland |
| ASTN2 | 236 | ubiquitous | marker | buccal mucosa cell, trigeminal ganglion, dorsal root ganglion |
| PLCE1 | 271 | broad | marker | renal glomerulus, metanephric glomerulus, ventricular zone |
| FHL5 | 210 | tissue_specific | marker | popliteal artery, tibial artery, right coronary artery |
| MSL3B | 130 | ubiquitous | yes | male germ line stem cell (sensu Vertebrata) in testis, primordial germ cell in gonad, testis |
| TRPM8 | 122 | tissue_specific | marker | right lobe of liver, liver, prostate gland |
| HPSE2 | 153 | tissue_specific | marker | calcaneal tendon, lower esophagus muscularis layer, lower esophagus |
Protein interactions among cohort
Intra-cohort edges: 26.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| YAP1 | 6,742 |
| TGFBR2 | 5,777 |
| SLC2A1 | 5,711 |
| TSC1 | 5,445 |
| MED14 | 5,271 |
| GJA1 | 4,942 |
| DOCK4 | 4,803 |
| JAG1 | 4,405 |
| CTR9 | 4,367 |
| UFL1 | 3,840 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ADAMTSL4 | SPINK2 | biogrid_interaction, intact |
| AHNAK2 | CAPN3 | string_interaction |
| AHNAK2 | DOCK4 | intact |
| AJAP1 | MPPED2 | string_interaction |
| AJAP1 | TSPAN2 | string_interaction |
| ASTN2 | TRPM8 | string_interaction |
| ASTN2 | TSPAN2 | string_interaction |
| CCM2L | ZCCHC14 | string_interaction |
| CPQ | MTDH | string_interaction |
| DOCK4 | IMMP2L | string_interaction |
| FHL5 | HEY2 | intact |
| FHL5 | SUGCT | string_interaction |
| FHL5 | UFL1 | string_interaction |
| FSHB | MPPED2 | string_interaction |
| GJA1 | SCN5A | string_interaction |
| GPR149 | MPPED2 | string_interaction |
| HEY2 | JAG1 | string_interaction |
| IGSF9B | YAP1 | intact |
| KCNK5 | SLC24A3 | string_interaction |
| LINGO2 | WSCD1 | string_interaction |
| MOAP1 | YAP1 | string_interaction |
| PHACTR1 | TRPM8 | string_interaction |
| PHACTR1 | TSPAN2 | string_interaction |
| SUGCT | TSPAN2 | string_interaction |
| TBC1D7 | TSC1 | biogrid_interaction, intact, string_interaction |
| USP9X | YAP1 | biogrid_interaction |
Structural data
PDB: 43 · AlphaFold-only: 32 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| YAP1 | P46937 | 41 |
| HCK | P08631 | 40 |
| FECH | P22830 | 25 |
| TGFBR2 | P37173 | 22 |
| CTR9 | Q6PD62 | 21 |
| GJA1 | P17302 | 19 |
| SCN5A | Q14524 | 16 |
| NLRP1 | Q9C000 | 12 |
| MED14 | O60244 | 11 |
| CLCN1 | P35523 | 9 |
| UFL1 | O94874 | 9 |
| FUT9 | Q9Y231 | 8 |
| STAT6 | P42226 | 7 |
| JAG1 | P78504 | 7 |
| LRP1 | Q07954 | 7 |
| STIM1 | Q13586 | 6 |
| TRPM8 | Q7Z2W7 | 6 |
| PHACTR1 | Q9C0D0 | 6 |
| TBC1D7 | Q9P0N9 | 6 |
| FGF23 | Q9GZV9 | 6 |
| FSHB | P01225 | 6 |
| SLC2A1 | P11166 | 5 |
| TSC1 | Q92574 | 5 |
| CAPN3 | P20807 | 5 |
| GFRA2 | O00451 | 5 |
| USP9X | Q93008 | 4 |
| CACNA1A | O00555 | 4 |
| RNF213 | Q63HN8 | 4 |
| DSP | P15924 | 4 |
| ITPK1 | Q13572 | 4 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| MPPED2 | Q15777 | 95.43 |
| CPQ | Q9Y646 | 93.81 |
| SDR9C7 | Q8NEX9 | 93.41 |
| INPP5A | Q14642 | 91.81 |
| IMMP2L | Q96T52 | 87.66 |
| TSPAN2 | O60636 | 87.26 |
| NAXE | Q8NCW5 | 86.71 |
| LINGO2 | Q7L985 | 85.02 |
| HPSE2 | Q8WWQ2 | 82.90 |
| FGF6 | P10767 | 79.20 |
| AGBL1 | Q96MI9 | 78.53 |
| WSCD1 | Q658N2 | 77.87 |
| DOCK4 | Q8N1I0 | 76.47 |
| INA | Q16352 | 75.42 |
| SLC24A3 | Q9HC58 | 70.31 |
| LRRIQ3 | A6PVS8 | 70.18 |
| KCNK5 | O95279 | 69.94 |
| ECM1 | Q16610 | 69.05 |
| MSL3B | P0C860 | 68.69 |
| HEY2 | Q9UBP5 | 65.56 |
| ADAMTSL4 | Q6UY14 | 65.18 |
| CFDP1 | Q9UEE9 | 64.86 |
| CDKN2AIP | Q9NXV6 | 63.54 |
| IGSF9B | Q9UPX0 | 62.71 |
| MARCHF4 | Q9P2E8 | 62.42 |
| JPH3 | Q8WXH2 | 61.52 |
| CCM2L | Q9NUG4 | 59.84 |
| ARMS2 | P0C7Q2 | 58.14 |
| CARF | Q8N187 | 56.59 |
| GPR149 | Q86SP6 | 54.04 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 352. Enrichment computed across 92 evidence-associated genes (61 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 61 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Defective LFNG causes SCDO3 | 2 | 74.9× | 0.073 | NOTCH3, NOTCH4 |
| Pre-NOTCH Processing in the Endoplasmic Reticulum | 2 | 62.4× | 0.073 | NOTCH3, NOTCH4 |
| NOTCH4 Activation and Transmission of Signal to the Nucleus | 2 | 34.0× | 0.090 | JAG1, NOTCH4 |
| Frs2-mediated activation | 2 | 31.2× | 0.090 | MAP2K2, NGF |
| Signaling by activated point mutants of FGFR1 | 2 | 31.2× | 0.090 | FGF23, FGF6 |
| FGFR2c ligand binding and activation | 2 | 28.8× | 0.090 | FGF23, FGF6 |
| FGFR4 ligand binding and activation | 2 | 26.7× | 0.090 | FGF23, FGF6 |
| Heme biosynthesis | 2 | 25.0× | 0.090 | FECH, PPOX |
| FGFR1c ligand binding and activation | 2 | 25.0× | 0.090 | FGF23, FGF6 |
| Phospholipase C-mediated cascade; FGFR4 | 2 | 25.0× | 0.090 | FGF23, FGF6 |
| Degradation of the extracellular matrix | 4 | 7.7× | 0.090 | CAPN3, MMP16, MMP17, HTRA1 |
| Defective SLC2A1 causes GLUT1 deficiency syndrome 1 (GLUT1DS1) | 1 | 187.2× | 0.092 | SLC2A1 |
| Activated point mutants of FGFR2 | 2 | 22.0× | 0.092 | FGF23, FGF6 |
| Phospholipase C-mediated cascade: FGFR1 | 2 | 22.0× | 0.092 | FGF23, FGF6 |
| Pre-NOTCH Processing in Golgi | 2 | 20.8× | 0.092 | NOTCH3, NOTCH4 |
| Phospholipase C-mediated cascade; FGFR2 | 2 | 20.8× | 0.092 | FGF23, FGF6 |
| PI-3K cascade:FGFR4 | 2 | 18.7× | 0.092 | FGF23, FGF6 |
| NOTCH4 Intracellular Domain Regulates Transcription | 2 | 18.7× | 0.092 | HEY2, NOTCH4 |
| Downstream signaling of activated FGFR1 | 2 | 17.8× | 0.092 | FGF23, FGF6 |
| SHC-mediated cascade:FGFR4 | 2 | 17.8× | 0.092 | FGF23, FGF6 |
| Signal transduction by L1 | 2 | 17.0× | 0.092 | MAP2K2, NRP1 |
| PI-3K cascade:FGFR1 | 2 | 17.0× | 0.092 | FGF23, FGF6 |
| SHC-mediated cascade:FGFR1 | 2 | 16.3× | 0.092 | FGF23, FGF6 |
| PI-3K cascade:FGFR2 | 2 | 16.3× | 0.092 | FGF23, FGF6 |
| FRS-mediated FGFR4 signaling | 2 | 16.3× | 0.092 | FGF23, FGF6 |
| SHC-mediated cascade:FGFR2 | 2 | 15.6× | 0.092 | FGF23, FGF6 |
| NOTCH3 Activation and Transmission of Signal to the Nucleus | 2 | 15.6× | 0.092 | JAG1, NOTCH3 |
| FRS-mediated FGFR1 signaling | 2 | 15.0× | 0.092 | FGF23, FGF6 |
| RUNX2 regulates osteoblast differentiation | 2 | 15.0× | 0.092 | YAP1, HEY2 |
| FRS-mediated FGFR2 signaling | 2 | 14.4× | 0.092 | FGF23, FGF6 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 86 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| mammary gland morphogenesis | 2 | 195.9× | 0.023 | STAT6, TGFBR2 |
| cardiac conduction system development | 3 | 36.7× | 0.030 | SCN5A, GJA1, HEY2 |
| aorta morphogenesis | 3 | 30.9× | 0.035 | TGFBR2, JAG1, LRP1 |
| tricuspid valve morphogenesis | 2 | 78.4× | 0.040 | TGFBR2, HEY2 |
| negative regulation of endothelial cell differentiation | 2 | 78.4× | 0.040 | JAG1, NOTCH4 |
| artery morphogenesis | 3 | 23.5× | 0.040 | TGFBR2, NOTCH3, NRP1 |
| pulmonary artery morphogenesis | 2 | 65.3× | 0.042 | HEY2, JAG1 |
| vasculogenesis | 4 | 11.9× | 0.042 | TGFBR2, YAP1, HEY2, NRP1 |
| trachea formation | 2 | 56.0× | 0.046 | TGFBR2, MAP2K2 |
| branching involved in blood vessel morphogenesis | 3 | 18.4× | 0.046 | TGFBR2, NOTCH4, NRP1 |
| positive regulation of transcription by RNA polymerase II | 15 | 2.6× | 0.046 | STAT6, YAP1, CTR9, FHL5, NCOA7, MED14, FSHB, HEY2 (+7 more) |
| sprouting angiogenesis | 3 | 16.8× | 0.055 | RNF213, NAXE, NRP1 |
| heme B biosynthetic process | 2 | 39.2× | 0.058 | FECH, PPOX |
| atrial cardiac muscle cell action potential | 2 | 39.2× | 0.058 | SCN5A, GJA1 |
| epithelial cell development | 2 | 35.6× | 0.058 | ADAMTSL4, ONECUT2 |
| cardiac left ventricle morphogenesis | 2 | 35.6× | 0.058 | TGFBR2, HEY2 |
| heme A biosynthetic process | 2 | 35.6× | 0.058 | FECH, PPOX |
| self proteolysis | 2 | 35.6× | 0.058 | NLRP1, CAPN3 |
| aortic valve morphogenesis | 3 | 15.1× | 0.058 | TGFBR2, HEY2, JAG1 |
| cellular response to amyloid-beta | 3 | 13.7× | 0.058 | CACNA1A, GJA1, LRP1 |
| positive regulation of angiogenesis | 5 | 6.7× | 0.058 | STIM1, TGFBR2, MTDH, ECM1, NRP1 |
| positive regulation of tolerance induction to self antigen | 1 | 195.9× | 0.060 | TGFBR2 |
| positive regulation of B cell tolerance induction | 1 | 195.9× | 0.060 | TGFBR2 |
| innate immune response-activating signaling pathway | 1 | 195.9× | 0.060 | HCK |
| regulation of type 2 immune response | 1 | 195.9× | 0.060 | ECM1 |
| visceral muscle development | 1 | 195.9× | 0.060 | MYH6 |
| detection of UV | 1 | 195.9× | 0.060 | FECH |
| obsolete positive regulation of vitamin D 24-hydroxylase activity | 1 | 195.9× | 0.060 | FGF23 |
| regulation of polarized epithelial cell differentiation | 1 | 195.9× | 0.060 | AJAP1 |
| leukocyte degranulation | 1 | 195.9× | 0.060 | HCK |
Therapeutics
Drugs indicated for this disease
27 approved, 29 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Acetaminophen | Approved (phase 4) |
| Aspirin | Approved (phase 4) |
| Atogepant | Approved (phase 4) |
| Botulinum Toxin Type A | Approved (phase 4) |
| Butalbital | Approved (phase 4) |
| Caffeine | Approved (phase 4) |
| Celecoxib | Approved (phase 4) |
| Clonidine | Approved (phase 4) |
| Diclofenac | Approved (phase 4) |
| Dihydroergotamine | Approved (phase 4) |
| Eletriptan | Approved (phase 4) |
| Eptinezumab | Approved (phase 4) |
| Erenumab | Approved (phase 4) |
| Ergotamine | Approved (phase 4) |
| Fremanezumab | Approved (phase 4) |
| Frovatriptan | Approved (phase 4) |
| Galcanezumab | Approved (phase 4) |
| Ibuprofen | Approved (phase 4) |
| Lasmiditan | Approved (phase 4) |
| Lisuride | Approved (phase 4) |
| Methysergide | Approved (phase 4) |
| Naratriptan | Approved (phase 4) |
| Rizatriptan | Approved (phase 4) |
| Sumatriptan | Approved (phase 4) |
| Topiramate | Approved (phase 4) |
| Ubrogepant | Approved (phase 4) |
| Zolmitriptan | Approved (phase 4) |
| Amitriptyline | Phase 3 (in late-stage trials) |
| Bupivacaine | Phase 3 (in late-stage trials) |
| Dexamethasone | Phase 3 (in late-stage trials) |
| Diphenhydramine | Phase 3 (in late-stage trials) |
| Ethinyl Estradiol | Phase 3 (in late-stage trials) |
| Fentanyl | Phase 3 (in late-stage trials) |
| Ketoprofen | Phase 3 (in late-stage trials) |
| Ketorolac | Phase 3 (in late-stage trials) |
| Lacosamide | Phase 3 (in late-stage trials) |
| Levonorgestrel | Phase 3 (in late-stage trials) |
| Lidocaine | Phase 3 (in late-stage trials) |
| Melatonin | Phase 3 (in late-stage trials) |
| Meloxicam | Phase 3 (in late-stage trials) |
| Memantine | Phase 3 (in late-stage trials) |
| Metformin | Phase 3 (in late-stage trials) |
| Metoclopramide | Phase 3 (in late-stage trials) |
| Naproxen | Phase 3 (in late-stage trials) |
| Onabotulinumtoxina | Phase 3 (in late-stage trials) |
| Palmidrol | Phase 3 (in late-stage trials) |
| Pregabalin | Phase 3 (in late-stage trials) |
| Prochlorperazine | Phase 3 (in late-stage trials) |
| Propranolol | Phase 3 (in late-stage trials) |
| Rimegepant | Phase 3 (in late-stage trials) |
| Sodium Chloride | Phase 3 (in late-stage trials) |
| Telcagepant | Phase 3 (in late-stage trials) |
| Valproic Acid | Phase 3 (in late-stage trials) |
| Vitamin E | Phase 3 (in late-stage trials) |
| Zavegepant | Phase 3 (in late-stage trials) |
| Zonisamide | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Almotriptan, Atorvastatin, Candesartan, Cannabidiol, Carbon Dioxide, Carisbamate, Corticotropin, Ergocalciferol, Eslicarbazepine Acetate, Estradiol, Fospropofol, Gabapentin Enacarbil, Lactose, Anhydrous, Lornoxicam, Loxapine, Methylprednisolone, Naltrexone, Niacin, Oxygen, Perampanel, Prabotulinumtoxin A, Propofol, Quinidine, Simvastatin, Timolol, Tricaprilin.
Drug target analysis
Approved (phase 4): 12 · Phase ≥3: 12 · Phased (≥1): 14 · Undrugged: 61
Druggability breadth: 43 of 92 evidence-associated genes (47%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| SCN5A | BEPRIDIL |
| SLC2A1 | EMETINE |
| STAT6 | THIORIDAZINE HYDROCHLORIDE |
| STIM1 | TERIFLUNOMIDE |
| TGFBR2 | PONATINIB |
| CACNA1A | NIMODIPINE |
| NLRP1 | PERHEXILINE MALEATE |
| TRPM8 | CLOTRIMAZOLE |
| FECH | VEMURAFENIB |
| GJA1 | KANAMYCIN |
| HCK | PONATINIB |
| MAP2K2 | VEMURAFENIB |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| SCN5A | 108 | 4 |
| HCK | 61 | 4 |
| MAP2K2 | 52 | 4 |
| FECH | 34 | 4 |
| TGFBR2 | 22 | 4 |
| TRPM8 | 15 | 4 |
| STAT6 | 11 | 4 |
| SLC2A1 | 7 | 4 |
| STIM1 | 2 | 4 |
| CACNA1A | 2 | 4 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| BEPRIDIL | 4 | SCN5A |
| CANDESARTAN CILEXETIL | 4 | SCN5A |
| TELMISARTAN | 4 | SCN5A |
| CARBAMAZEPINE | 4 | SCN5A |
| DIBUCAINE | 4 | SCN5A |
| IMIPRAMINE | 4 | SCN5A |
| DROPERIDOL | 4 | SCN5A |
| PONATINIB | 4 | HCK, SCN5A, TGFBR2 |
| DULOXETINE | 4 | SCN5A |
| PALONOSETRON | 4 | SCN5A |
| VILANTEROL | 4 | SCN5A |
| MEXILETINE HYDROCHLORIDE | 4 | SCN5A |
| UNOPROSTONE ISOPROPYL | 4 | SCN5A |
| LURASIDONE | 4 | SCN5A |
| LETERMOVIR | 4 | SCN5A |
| SERTINDOLE | 4 | SCN5A |
| FEDRATINIB | 4 | HCK, MAP2K2, SCN5A, TGFBR2 |
| QUINIDINE | 4 | SCN5A |
| DARUNAVIR | 4 | SCN5A |
| DARIFENACIN | 4 | SCN5A |
| BENZONATATE | 4 | SCN5A |
| TOLTERODINE | 4 | SCN5A |
| RANOLAZINE | 4 | SCN5A |
| PIMOZIDE | 4 | SCN5A |
| NIMODIPINE | 4 | CACNA1A, SCN5A |
| FELODIPINE | 4 | SCN5A |
| NICARDIPINE | 4 | SCN5A |
| AMLODIPINE | 4 | SCN5A |
| PHENYTOIN | 4 | SCN5A |
| PALIPERIDONE | 4 | SCN5A |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 12.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| MAP2K2 | 615 | Binding:581, Functional:33, ADMET:1 |
| SCN5A | 594 | Binding:380, Functional:98, ADMET:72, Toxicity:43, Unclassified:1 |
| HCK | 431 | Binding:429, Functional:1, ADMET:1 |
| TGFBR2 | 188 | Binding:188 |
| TRPM8 | 160 | Binding:148, Functional:12 |
| SLC2A1 | 158 | Binding:130, ADMET:24, Functional:4 |
| YAP1 | 135 | Binding:135 |
| STAT6 | 81 | Binding:77, Functional:4 |
| USP9X | 41 | Binding:41 |
| STIM1 | 35 | Binding:33, Functional:1, ADMET:1 |
| CACNA1A | 19 | Binding:18, Functional:1 |
| FECH | 9 | Binding:9 |
| CTR9 | 8 | Binding:8 |
| INPP5A | 6 | Binding:6 |
| ITPK1 | 6 | Binding:6 |
| GJA1 | 4 | Binding:4 |
| KCNK5 | 4 | Binding:4 |
| PRDM16 | 2 | Binding:2 |
| NLRP1 | 2 | Functional:1, Binding:1 |
| GPR149 | 2 | Binding:2 |
| MTDH | 2 | Binding:2 |
| DSP | 2 | Binding:2 |
| FGF23 | 2 | Binding:2 |
| GFRA2 | 2 | Binding:2 |
| RNF213 | 1 | Binding:1 |
| UFL1 | 1 | Binding:1 |
| FUT9 | 1 | Binding:1 |
| INA | 1 | Binding:1 |
| JAG1 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| TGFBR2 | 2.7.10.2 | non-specific protein-tyrosine kinase |
| PRDM16 | 2.1.1.367, 2.1.1.370 | [histone H3]-lysine9 N-methyltransferase, [histone H3]-lysine4 N-dimethyltransferase |
| CAPN3 | 3.4.22.54, 3.4.22.56 | calpain-3, caspase-3 |
| SUGCT | 2.8.3.13 | succinate-hydroxymethylglutarate CoA-transferase |
| PLCE1 | 3.1.4.11 | phosphoinositide phospholipase C |
| NAXE | 5.1.99.6 | NAD(P)H-hydrate epimerase |
| FECH | 4.99.1.1 | protoporphyrin ferrochelatase |
| FUT9 | 2.4.1.152 | 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase |
| HCK | 2.7.10.2 | non-specific protein-tyrosine kinase |
| INPP5A | 3.1.3.56 | inositol-polyphosphate 5-phosphatase |
| ITPK1 | 2.7.1.134, 2.7.1.159 | inositol-tetrakisphosphate 1-kinase, inositol-1,3,4-trisphosphate 5/6-kinase |
| MAP2K2 | 2.7.12.2 | mitogen-activated protein kinase kinase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| SCN5A | 594 |
| SLC2A1 | 158 |
| TGFBR2 | 188 |
| YAP1 | 135 |
| TRPM8 | 160 |
| HCK | 431 |
| MAP2K2 | 615 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 74; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| BEPRIDIL | 4 | SCN5A |
| CANDESARTAN CILEXETIL | 4 | SCN5A |
| TELMISARTAN | 4 | SCN5A |
| CARBAMAZEPINE | 4 | SCN5A |
| DIBUCAINE | 4 | SCN5A |
| IMIPRAMINE | 4 | SCN5A |
| DROPERIDOL | 4 | SCN5A |
| PONATINIB | 4 | HCK, SCN5A, TGFBR2 |
| DULOXETINE | 4 | SCN5A |
| PALONOSETRON | 4 | SCN5A |
| VILANTEROL | 4 | SCN5A |
| MEXILETINE HYDROCHLORIDE | 4 | SCN5A |
| UNOPROSTONE ISOPROPYL | 4 | SCN5A |
| LURASIDONE | 4 | SCN5A |
| LETERMOVIR | 4 | SCN5A |
| SERTINDOLE | 4 | SCN5A |
| FEDRATINIB | 4 | HCK, MAP2K2, SCN5A, TGFBR2 |
| QUINIDINE | 4 | SCN5A |
| DARUNAVIR | 4 | SCN5A |
| DARIFENACIN | 4 | SCN5A |
| BENZONATATE | 4 | SCN5A |
| TOLTERODINE | 4 | SCN5A |
| RANOLAZINE | 4 | SCN5A |
| PIMOZIDE | 4 | SCN5A |
| NIMODIPINE | 4 | CACNA1A, SCN5A |
| FELODIPINE | 4 | SCN5A |
| NICARDIPINE | 4 | SCN5A |
| AMLODIPINE | 4 | SCN5A |
| PHENYTOIN | 4 | SCN5A |
| PALIPERIDONE | 4 | SCN5A |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 12 | SCN5A, SLC2A1, STAT6, STIM1, TGFBR2, CACNA1A, NLRP1, TRPM8, FECH, GJA1 (+2 more) |
| B | Phased (≥1) drug, not yet approved | 2 | USP9X, CTR9 |
| C | Druggable family + PDB, no drug | 7 | CAPN3, SUGCT, ASTN2, PLCE1, FUT9, IGLL1, ITPK1 |
| D | Druggable family + AlphaFold only, no drug | 9 | IMMP2L, CPQ, NAXE, LINGO2, GPR149, AGBL1, IGSF9B, INPP5A, KCNK5 |
| E | Difficult family or no structure, no drug | 45 | SLC24A3, SPINK2, MPPED2, TSC1, PRDM16, JPH3, CARF, RNF213, CCM2L, YAP1 (+35 more) |
Undrugged target profiles
61 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| YAP1 | 135 | — |
| SLC24A3 | 0 | — |
| SPINK2 | 0 | — |
| MPPED2 | 0 | — |
| TSC1 | 0 | — |
| PRDM16 | 2 | — |
| JPH3 | 0 | — |
| CARF | 0 | — |
| RNF213 | 1 | — |
| IMMP2L | 0 | — |
| CAPN3 | 0 | — |
| SUGCT | 0 | — |
| CCM2L | 0 | — |
| MOAP1 | 0 | — |
| CPQ | 0 | — |
| ASTN2 | 0 | — |
| PLCE1 | 0 | — |
| FHL5 | 0 | — |
| MSL3B | 0 | — |
| HPSE2 | 0 | — |
| NAXE | 0 | — |
| CFDP1 | 0 | — |
| DOCK4 | 0 | — |
| ADAMTSL4 | 0 | — |
| AHNAK2 | 0 | — |
| CLCN1 | 0 | — |
| TSPAN2 | 0 | — |
| PHACTR1 | 0 | — |
| TBC1D7 | 0 | — |
| NCOA7 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 1,313.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 522 |
| PHASE3 | 203 |
| PHASE4 | 148 |
| PHASE2 | 112 |
| PHASE1 | 82 |
| PHASE2/PHASE3 | 18 |
| PHASE1/PHASE2 | 8 |
| EARLY_PHASE1 | 7 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT02670161 | PHASE4 | ENROLLING_BY_INVITATION | Quality Improvement and Practice Based Research in Neurology Using the EMR |
| NCT04748601 | PHASE4 | RECRUITING | Qudexy XR for the Prevention of Migraine in Children 6 to 11 Years Old |
| NCT04925414 | PHASE4 | RECRUITING | Migraine and High Flow Oxygenotherapy at the Emergency Department (MiOx) |
| NCT06173661 | PHASE4 | ACTIVE_NOT_RECRUITING | Fremanezumab Treatment of Migraine in Women With Menstrual Migraine Ages 18-45 |
| NCT06401642 | PHASE4 | RECRUITING | Effectiveness and Tolerability of Zavegepant for Acute Migraine Treatment Among Those Using CGRP Targeting Preventive Medications |
| NCT06432127 | PHASE4 | NOT_YET_RECRUITING | Role of Ultrasound Guide Greater Occipital Nerve Block at Second Cervical Vertebra in Migraine Headache Prophylaxis |
| NCT06473597 | PHASE4 | RECRUITING | A Comparison of Nurtec ODT to Maxalt MLT-ODT in Adult ED Patients With Migraine Headache |
| NCT06485726 | PHASE4 | RECRUITING | Valproate Versus Propranolol in Migraine |
| NCT06499116 | PHASE4 | NOT_YET_RECRUITING | Comparison of the Effectiveness of First-line Preventive Treatment of Migraine in Primary Care |
| NCT06509503 | PHASE4 | RECRUITING | Impact of Combined Oral Contraceptive Pills on Migraine |
| NCT06701526 | PHASE4 | ACTIVE_NOT_RECRUITING | A Trial of Eptinezumab in Participants With Migraine and Insufficient Response to Anti-CGRP Medications |
| NCT06786650 | PHASE4 | ACTIVE_NOT_RECRUITING | Comparision of the Analgesic Effects of Intravenous Ibuprofen and Tenoxicam in Acute Migraine Attack |
| NCT06972056 | PHASE4 | RECRUITING | Comparative Effectiveness of Migraine Preventive Medications: The APT Comparison Study |
| NCT07022496 | PHASE4 | RECRUITING | Assessment of Oral Caffeine Intake in Changing the Severity of Acute Migraine Attack Using VAS Score Among Patients Attending Headache and Neurology Outpatients Clinic of Ainshams University Hospitals |
| NCT07093138 | PHASE4 | RECRUITING | Evaluation of Efficacy and Safety of Topical Cannabidiol (Canvert-M Produced by Alasht Pharmed co. Iran) in the Treatment of Migraine Attacks |
| NCT07100496 | PHASE4 | ACTIVE_NOT_RECRUITING | Evaluation of MIG-SPRAY Treatment on Migraine |
| NCT07301008 | PHASE4 | RECRUITING | Rimegepant as Preemptive Treatment for Predictable Trigger-Induced Migraine in Adult Patients in the US |
| NCT07336056 | PHASE4 | ACTIVE_NOT_RECRUITING | Nerivio Efficacy Under High-Frequency Use |
| NCT00174395 | PHASE4 | COMPLETED | A Trial to Study of the Effects of Eletriptan 40mg on Mild vs Moderate to Severe Pain Intensity of Migraine |
| NCT00208065 | PHASE4 | COMPLETED | Evaluation of Histamine, CGRP and VIP as Markers for Activation of Trigeminal and Parasympathetic Nerve Fibers |
| NCT00210496 | PHASE4 | COMPLETED | Potential Impact (Benefit) of Preventative Treatment With Topamax on the Effectiveness of Axert in the Acute Treatment of Migraine |
| NCT00210509 | PHASE4 | COMPLETED | A Study of the Effectiveness and Safety of Almotriptan Versus Placebo in the Treatment of Migraine Headache |
| NCT00212810 | PHASE4 | COMPLETED | Evaluation of the Effectiveness of Topiramate in Preventing the Transformation From Episodic Migraine to Chronic Daily Headache. |
| NCT00212823 | PHASE4 | COMPLETED | The Effectiveness of Almotriptan Malate (AXERT®) 12.5 Milligrams When Taken at the Onset of Migraine Pain |
| NCT00216736 | PHASE4 | COMPLETED | Oral Dexamethasone for Treatment of Migraine |
| NCT00259636 | PHASE4 | WITHDRAWN | Zonisamide for Fibromyalgia & Migraine |
| NCT00259649 | PHASE4 | COMPLETED | Prospective Survey of Menstrual Migraine & Prevention With Eletriptan |
| NCT00297375 | PHASE4 | COMPLETED | A Study Comparing the Effectiveness and Safety of ULTRACET® (Tramadol HCl/Acetaminophen) Versus Placebo for the Treatment of Acute Pain From a Migraine Headache |
| NCT00335777 | PHASE4 | COMPLETED | A Research Study Examining Migranal and Skin Sensitivity in Subjects With Migraine |
| NCT00363506 | PHASE4 | UNKNOWN | American Migraine Prevention Study |
| NCT00364806 | PHASE4 | COMPLETED | Prochlorperazine vs Metoclopramide |
| NCT00391755 | PHASE4 | TERMINATED | A Double-Blind Placebo-Controlled Trial of Rozerem in Migraine Headaches |
| NCT00397254 | PHASE4 | COMPLETED | Two Rizatriptan Prescribing Portions for Treatment of Migraine |
| NCT00443352 | PHASE4 | COMPLETED | A Research Study Examining The Use Of Duloxetine In The Prevention Of Migraine Headache |
| NCT00449787 | PHASE4 | COMPLETED | Comparing Naproxen to Sumatriptan for Emergency Headache Patients |
| NCT00632385 | PHASE4 | COMPLETED | Efficacy and Safety of Eletriptan for the Treatment of Migraine in Patients Not Satisfied With Rizatriptan Therapy |
| NCT00634985 | PHASE4 | COMPLETED | Safety and Efficacy of Eletriptan for the Treatment of Migraine in Subjects Unsuccessfully Treated With Nonsteroidal Anti-inflammatory Drugs |
| NCT00637286 | PHASE4 | COMPLETED | ZAP, US. Zomig for Appropriate for Primary Care |
| NCT00753311 | PHASE4 | COMPLETED | Rizatriptan in Acute Treatment of Migraine in Patients With Unilateral Trigeminal-autonomic Symptoms. |
| NCT00792636 | PHASE4 | COMPLETED | A Study to Determine the Effect of Sumatriptan and Naproxen Sodium Combination Tablet, Sumatriptan Tablet, and Naproxen Sodium Tablet on Blood Pressure When Treating Migraine Headaches That Occur During a 6-month Period |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| SUMATRIPTAN | 4 | 129 |
| TOPIRAMATE | 4 | 43 |
| ERENUMAB | 4 | 34 |
| RIZATRIPTAN | 4 | 31 |
| PROPRANOLOL | 4 | 25 |
| AMITRIPTYLINE | 4 | 24 |
| FREMANEZUMAB | 4 | 20 |
| GALCANEZUMAB | 4 | 20 |
| RIMEGEPANT | 4 | 20 |
| EPTINEZUMAB | 4 | 19 |
| LASMIDITAN | 4 | 16 |
| ELETRIPTAN | 4 | 15 |
| NAPROXEN | 4 | 15 |
| PROCHLORPERAZINE | 4 | 15 |
| DIHYDROERGOTAMINE | 4 | 14 |
| METOCLOPRAMIDE | 4 | 13 |
| KETOROLAC | 4 | 12 |
| ATOGEPANT | 4 | 11 |
| VALPROIC ACID | 4 | 11 |
| FROVATRIPTAN | 4 | 10 |
| UBROGEPANT | 4 | 10 |
| NARATRIPTAN | 4 | 8 |
| ONABOTULINUMTOXINA | 4 | 8 |
| ZAVEGEPANT | 4 | 8 |
| ZOLMITRIPTAN | 4 | 8 |
| KETOPROFEN | 4 | 6 |
| BOTULINUM TOXIN TYPE A | 4 | 5 |
| CAFFEINE | 4 | 5 |
| ZONISAMIDE | 4 | 5 |
| ACETAMINOPHEN | 4 | 4 |
Related Atlas pages
- Cohort genes: SCN5A, SLC24A3, SLC2A1, SPINK2, STAT6, STIM1, TGFBR2, MPPED2, TSC1, USP9X, CACNA1A, PRDM16, JPH3, NLRP1, CARF, RNF213, IMMP2L, CAPN3, SUGCT, CCM2L, YAP1, MOAP1, CTR9, CPQ, ASTN2, PLCE1, FHL5, MSL3B, TRPM8, HPSE2, NAXE, CFDP1, DOCK4, ADAMTSL4, AHNAK2, CLCN1, TSPAN2, PHACTR1, TBC1D7, NCOA7, LINGO2, UFL1, GPR149, MED14, ZCCHC14, CDKN2AIP, HJURP, AGBL1, LRRIQ3, WSCD1, MARCHF4, MTDH, SDR9C7, DSP, AJAP1, ECM1, IGSF9B, ARMS2, FECH, FGF23, FGF6, FSHB, FUT9, GFRA2, GJA1, HCK, HEY2, IGLL1, INA, INPP5A, ITPK1, JAG1, KCNK5, LRP1, MAP2K2
- Drugs: Sumatriptan, Topiramate, Erenumab, Rizatriptan, Propranolol, Amitriptyline, Fremanezumab, Galcanezumab, Rimegepant, Eptinezumab, Lasmiditan, Eletriptan, Naproxen, Prochlorperazine, Dihydroergotamine, Metoclopramide, Ketorolac, Atogepant, Valproic Acid, Frovatriptan, Ubrogepant, Naratriptan, Onabotulinumtoxina, Zavegepant, Zolmitriptan, Ketoprofen, Botulinum Toxin Type A, Caffeine, Zonisamide, Acetaminophen