mitochondrial proton-transporting ATP synthase complex deficiency
diseaseOn this page
Also known as isolated ATP synthase deficiencyisolated mitochondrial respiratory chain complex V deficiency
Summary
mitochondrial proton-transporting ATP synthase complex deficiency (MONDO:0014471) is a disease (an umbrella term covering 8 Mondo subtypes) with 8 cohort genes. The dominant Reactome pathway is Formation of ATP by chemiosmotic coupling (6 cohort genes).
At a glance
- Umbrella term: 8 Mondo subtypes
- Cohort genes: 8
- ClinVar variants: 1
- Phenotypes (HPO): 40
Clinical features
Signs & symptoms
Clinical features (HPO)
40 HPO clinical features (Orphanet curated; top 40 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0001250 | Seizure | Frequent (30-79%) |
| HP:0001251 | Ataxia | Frequent (30-79%) |
| HP:0001252 | Hypotonia | Frequent (30-79%) |
| HP:0001270 | Motor delay | Frequent (30-79%) |
| HP:0001298 | Encephalopathy | Frequent (30-79%) |
| HP:0001324 | Muscle weakness | Frequent (30-79%) |
| HP:0001639 | Hypertrophic cardiomyopathy | Frequent (30-79%) |
| HP:0001644 | Dilated cardiomyopathy | Frequent (30-79%) |
| HP:0001987 | Hyperammonemia | Frequent (30-79%) |
| HP:0002098 | Respiratory distress | Frequent (30-79%) |
| HP:0003128 | Lactic acidosis | Frequent (30-79%) |
| HP:0003348 | Hyperalaninemia | Frequent (30-79%) |
| HP:0003535 | 3-Methylglutaconic aciduria | Frequent (30-79%) |
| HP:0009830 | Peripheral neuropathy | Frequent (30-79%) |
| HP:0011675 | Arrhythmia | Frequent (30-79%) |
| HP:0012758 | Neurodevelopmental delay | Frequent (30-79%) |
| HP:0000089 | Renal hypoplasia | Occasional (5-29%) |
| HP:0000135 | Hypogonadism | Occasional (5-29%) |
| HP:0000252 | Microcephaly | Occasional (5-29%) |
| HP:0000407 | Sensorineural hearing impairment | Occasional (5-29%) |
| HP:0000486 | Strabismus | Occasional (5-29%) |
| HP:0000508 | Ptosis | Occasional (5-29%) |
| HP:0000510 | Rod-cone dystrophy | Occasional (5-29%) |
| HP:0000518 | Cataract | Occasional (5-29%) |
| HP:0000618 | Blindness | Occasional (5-29%) |
| HP:0000639 | Nystagmus | Occasional (5-29%) |
| HP:0000648 | Optic atrophy | Occasional (5-29%) |
| HP:0000821 | Hypothyroidism | Occasional (5-29%) |
| HP:0001254 | Lethargy | Occasional (5-29%) |
| HP:0001258 | Spastic paraplegia | Occasional (5-29%) |
| HP:0001260 | Dysarthria | Occasional (5-29%) |
| HP:0001272 | Cerebellar atrophy | Occasional (5-29%) |
| HP:0001332 | Dystonia | Occasional (5-29%) |
| HP:0002120 | Cerebral cortical atrophy | Occasional (5-29%) |
| HP:0002240 | Hepatomegaly | Occasional (5-29%) |
| HP:0002445 | Tetraplegia | Occasional (5-29%) |
| HP:0003546 | Exercise intolerance | Occasional (5-29%) |
| HP:0004322 | Short stature | Occasional (5-29%) |
| HP:0032794 | Myoclonic seizure | Occasional (5-29%) |
| HP:0000602 | Ophthalmoplegia | Very rare (<1-4%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | mitochondrial proton-transporting ATP synthase complex deficiency |
| Mondo ID | MONDO:0014471 |
| OMIM | 604273 |
| Orphanet | 254913 |
| DOID | DOID:0111143 |
| ICD-11 | 902255625 |
| UMLS | C4757950 |
| MedGen | 1655626 |
| GARD | 0018649 |
| Is cancer (heuristic) | no |
Also known as: isolated ATP synthase deficiency · isolated mitochondrial respiratory chain complex V deficiency
Data availability: 1 ClinVar variant · 7 GenCC gene-disease records · 4 cell lines.
Disease family
An umbrella term covering 8 Mondo subtypes.
Classification path: disease › human disease › disease by developmental or physiological process › metabolic disease › developmental anomaly of metabolic origin › inborn mitochondrial metabolism disorder › mitochondrial oxidative phosphorylation disorder › combined oxidative phosphorylation deficiency › mitochondrial proton-transporting ATP synthase complex deficiency
Related subtypes (57): severe X-linked mitochondrial encephalomyopathy, hepatoencephalopathy due to combined oxidative phosphorylation defect type 1, combined oxidative phosphorylation defect type 2, fatal mitochondrial disease due to combined oxidative phosphorylation defect type 3, combined oxidative phosphorylation defect type 4, hypotonia with lactic acidemia and hyperammonemia, combined oxidative phosphorylation defect type 7, combined oxidative phosphorylation defect type 8, combined oxidative phosphorylation defect type 9, mitochondrial hypertrophic cardiomyopathy with lactic acidosis due to MTO1 deficiency, combined oxidative phosphorylation defect type 11, leukoencephalopathy-thalamus and brainstem anomalies-high lactate syndrome, combined oxidative phosphorylation defect type 13, combined oxidative phosphorylation defect type 14, combined oxidative phosphorylation defect type 15, infantile hypertrophic cardiomyopathy due to MRPL44 deficiency, combined oxidative phosphorylation defect type 17, growth and developmental delay-hypotonia-vision impairment-lactic acidosis syndrome, combined oxidative phosphorylation deficiency 19, combined oxidative phosphorylation defect type 20, combined oxidative phosphorylation defect type 21, combined oxidative phosphorylation defect type 23, combined oxidative phosphorylation defect type 24, combined oxidative phosphorylation defect type 25, combined oxidative phosphorylation defect type 26, combined oxidative phosphorylation defect type 27, combined oxidative phosphorylation deficiency 28, combined oxidative phosphorylation deficiency 29, combined oxidative phosphorylation defect type 30, lethal left ventricular non-compaction-seizures-hypotonia-cataract-developmental delay syndrome, combined oxidative phosphorylation deficiency 40, combined oxidative phosphorylation deficiency 41, combined oxidative phosphorylation deficiency 42, combined oxidative phosphorylation deficiency 43, combined oxidative phosphorylation deficiency 44, combined oxidative phosphorylation deficiency 52, combined oxidative phosphorylation deficiency 53, combined oxidative phosphorylation deficiency 54, combined oxidative phosphorylation deficiency 37, combined oxidative phosphorylation deficiency 38, combined oxidative phosphorylation deficiency 39, combined oxidative phosphorylation deficiency 45, combined oxidative phosphorylation deficiency 46, combined oxidative phosphorylation deficiency 47, combined oxidative phosphorylation deficiency 48, combined oxidative phosphorylation deficiency 51, combined oxidative phosphorylation deficiency 32, combined oxidative phosphorylation deficiency 33, combined oxidative phosphorylation deficiency 34, combined oxidative phosphorylation deficiency 35, combined oxidative phosphorylation deficiency 36, combined oxidative phosphorylation deficiency 55, combined oxidative phosphorylation deficiency 56, combined oxidative phosphorylation deficiency 57, combined oxidative phosphorylation deficiency 58, combined oxidative phosphorylation deficiency 59, combined oxidative phosphorylation deficiency 60
Subtypes (8): mitochondrial complex V (ATP synthase) deficiency, nuclear type 1, mitochondrial complex V (ATP synthase) deficiency, nuclear type 3, mitochondrial complex V (ATP synthase) deficiency, nuclear type 4B, combined oxidative phosphorylation deficiency 22, mitochondrial complex 5 (ATP synthase) deficiency, mitochondrial type 1, mitochondrial complex 5 (ATP synthase) deficiency, nuclear type 6, mitochondrial complex V (ATP synthase) deficiency, nuclear type 4A, mitochondrial complex V (ATP synthase) deficiency, nuclear type 7
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
1 retrieved; paginated sample, class counts are floors:
1 pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 203989 | NM_017866.6(TMEM70):c.117_118dup (p.Ser40fs) | TMEM70 | Pathogenic | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 33 · Orphanet: 15 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| ATP5F1A | Strong | Autosomal dominant | mitochondrial complex V (ATP synthase) deficiency, nuclear type 4A | 7 |
| ATP5F1D | Strong | Autosomal recessive | mitochondrial complex V (ATP synthase) deficiency, nuclear type 5 | 4 |
| ATP5F1E | Strong | Autosomal recessive | mitochondrial complex V (ATP synthase) deficiency, nuclear type 3 | 4 |
| ATPAF2 | Supportive | Autosomal recessive | mitochondrial proton-transporting ATP synthase complex deficiency | 4 |
| MT-ATP6 | Supportive | Autosomal recessive | mitochondrial proton-transporting ATP synthase complex deficiency | 8 |
| MT-ATP8 | Supportive | Autosomal recessive | mitochondrial proton-transporting ATP synthase complex deficiency | 3 |
| ATP5F1B | Limited | Autosomal dominant | mitochondrial proton-transporting ATP synthase complex deficiency | 3 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| ATPAF2 | Orphanet:254913 | Isolated ATP synthase deficiency |
| MT-ATP6 | Orphanet:104 | Leber hereditary optic neuropathy |
| MT-ATP6 | Orphanet:225154 | Familial infantile bilateral striatal necrosis |
| MT-ATP6 | Orphanet:254913 | Isolated ATP synthase deficiency |
| MT-ATP6 | Orphanet:255210 | Mitochondrial DNA-associated Leigh syndrome |
| MT-ATP6 | Orphanet:320360 | MT-ATP6-related mitochondrial spastic paraplegia |
| MT-ATP6 | Orphanet:397750 | Periodic paralysis with later-onset distal motor neuropathy |
| MT-ATP6 | Orphanet:644 | NARP syndrome |
| MT-ATP8 | Orphanet:254913 | Isolated ATP synthase deficiency |
| MT-ATP8 | Orphanet:397750 | Periodic paralysis with later-onset distal motor neuropathy |
| MT-ATP8 | Orphanet:480 | Kearns-Sayre syndrome |
| ATP5F1A | Orphanet:254913 | Isolated ATP synthase deficiency |
| ATP5F1D | Orphanet:254913 | Isolated ATP synthase deficiency |
| ATP5F1E | Orphanet:254913 | Isolated ATP synthase deficiency |
| TMEM70 | Orphanet:1194 | TMEM70-related mitochondrial encephalo-cardio-myopathy |
Cohort genes → proteins
8 cohort genes, 8 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 8 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| ATPAF2 | HGNC:18802 | ENSG00000171953 | Q8N5M1 | ATP synthase mitochondrial F1 complex assembly factor 2 | gencc |
| MT-ATP6 | HGNC:7414 | ENSG00000198899 | P00846 | ATP synthase F(0) complex subunit a | gencc |
| MT-ATP8 | HGNC:7415 | ENSG00000228253 | P03928 | ATP synthase F(0) complex subunit 8 | gencc |
| ATP5F1A | HGNC:823 | ENSG00000152234 | P25705 | ATP synthase F(1) complex subunit alpha, mitochondrial | gencc |
| ATP5F1B | HGNC:830 | ENSG00000110955 | P06576 | ATP synthase F(1) complex subunit beta, mitochondrial | gencc |
| ATP5F1D | HGNC:837 | ENSG00000099624 | P30049 | ATP synthase F(1) complex subunit delta, mitochondrial | gencc |
| ATP5F1E | HGNC:838 | ENSG00000124172 | P56381 | ATP synthase F(1) complex subunit epsilon, mitochondrial | gencc |
| TMEM70 | HGNC:26050 | ENSG00000175606 | Q9BUB7 | Transmembrane protein 70, mitochondrial | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| ATPAF2 | ATP synthase mitochondrial F1 complex assembly factor 2 | Plays a role in the assembly of the F1 component of the mitochondrial ATP synthase (ATPase). |
| MT-ATP6 | ATP synthase F(0) complex subunit a | Subunit a, of the mitochondrial membrane ATP synthase complex (F(1)F(0) ATP synthase or Complex V) that produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of th… |
| MT-ATP8 | ATP synthase F(0) complex subunit 8 | Subunit 8, of the mitochondrial membrane ATP synthase complex (F(1)F(0) ATP synthase or Complex V) that produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of th… |
| ATP5F1A | ATP synthase F(1) complex subunit alpha, mitochondrial | Subunit alpha, of the mitochondrial membrane ATP synthase complex (F(1)F(0) ATP synthase or Complex V) that produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes o… |
| ATP5F1B | ATP synthase F(1) complex subunit beta, mitochondrial | Catalytic subunit beta, of the mitochondrial membrane ATP synthase complex (F(1)F(0) ATP synthase or Complex V) that produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport co… |
| ATP5F1D | ATP synthase F(1) complex subunit delta, mitochondrial | Subunit delta, of the mitochondrial membrane ATP synthase complex (F(1)F(0) ATP synthase or Complex V) that produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes o… |
| ATP5F1E | ATP synthase F(1) complex subunit epsilon, mitochondrial | Subunit epsilon, of the mitochondrial membrane ATP synthase complex (F(1)F(0) ATP synthase or Complex V) that produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes… |
| TMEM70 | Transmembrane protein 70, mitochondrial | Scaffold protein that participates in the c-ring assembly of mitochondrial ATP synthase (F(1)F(0) ATP synthase or complex V) by facilitating the membrane insertion and oligomer formation of the subunit c/ATP5MC1 through its interaction. |
Protein-family classification
Druggable: 0 · Difficult: 0 · Unknown: 8 · Druggable fraction: 0.0
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Other/Unknown | 8 | 1.8× | 0.009 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| ATPAF2 | Other/Unknown | no | ATP12_ATP_synth-F1-assembly, ATP12_ortho_dom_sf, ATP12_ATP_synth-F1-assembly_N | |
| MT-ATP6 | Other/Unknown | no | ATP_synth_F0_asu, ATP_synth_F0_asu_AS, F0_ATP_A_sf | |
| MT-ATP8 | Other/Unknown | no | ATP8_metazoa, ATP8_mammal | |
| ATP5F1A | Other/Unknown | no | ATPase_F1/V1/A1_a/bsu_nucl-bd, ATP_synth_asu_C, ATPase_F1/V1/A1_a/bsu_N | |
| ATP5F1B | Other/Unknown | no | ATPase_F1/V1/A1_a/bsu_nucl-bd, AAA+_ATPase, ATPase_F1/V1/A1_a/bsu_N | |
| ATP5F1D | Other/Unknown | no | ATP_synth_F1_dsu/esu, ATP_synth_F1_dsu/esu_N, ATPsynth_dsu/esu_N | |
| ATP5F1E | Other/Unknown | no | ATP_synth_F1_esu_mt, ATP_synth_F1_esu_sf_mt | |
| TMEM70 | Other/Unknown | no | TMEM70, TMEM70/TMEM186/TMEM223 |
Expression context
Cohort genes with no expression data: 0.
8 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 8 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| hindlimb stylopod muscle | 2 |
| renal medulla | 2 |
| apex of heart | 2 |
| left testis | 1 |
| right testis | 1 |
| descending thoracic aorta | 1 |
| left uterine tube | 1 |
| mucosa of stomach | 1 |
| gastrocnemius | 1 |
| right lung | 1 |
| right ovary | 1 |
| esophagus squamous epithelium | 1 |
| heart right ventricle | 1 |
| cardiac ventricle | 1 |
| heart left ventricle | 1 |
| mucosa of transverse colon | 1 |
| cranial nerve II | 1 |
| substantia nigra pars reticulata | 1 |
| deltoid | 1 |
| gluteal muscle | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| ATPAF2 | 226 | ubiquitous | marker | right testis, left testis, hindlimb stylopod muscle |
| MT-ATP6 | 134 | ubiquitous | marker | mucosa of stomach, left uterine tube, descending thoracic aorta |
| MT-ATP8 | 134 | marker | gastrocnemius, right ovary, right lung | |
| ATP5F1A | 295 | ubiquitous | marker | heart right ventricle, esophagus squamous epithelium, renal medulla |
| ATP5F1B | 288 | ubiquitous | marker | apex of heart, cardiac ventricle, heart left ventricle |
| ATP5F1D | 292 | ubiquitous | marker | apex of heart, hindlimb stylopod muscle, mucosa of transverse colon |
| ATP5F1E | 296 | ubiquitous | marker | renal medulla, cranial nerve II, substantia nigra pars reticulata |
| TMEM70 | 290 | ubiquitous | marker | vastus lateralis, deltoid, gluteal muscle |
Protein interactions among cohort
Intra-cohort edges: 19.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| ATP5F1B | 6,304 |
| ATP5F1A | 6,160 |
| ATP5F1D | 3,748 |
| MT-ATP6 | 2,869 |
| ATPAF2 | 2,081 |
| ATP5F1E | 1,742 |
| TMEM70 | 1,548 |
| MT-ATP8 | 916 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| ATP5F1A | ATP5F1B | intact, string_interaction |
| ATP5F1A | ATP5F1D | string_interaction |
| ATP5F1A | ATP5F1E | string_interaction |
| ATP5F1A | ATPAF2 | intact, string_interaction |
| ATP5F1B | ATP5F1D | string_interaction |
| ATP5F1B | ATP5F1E | string_interaction |
| ATP5F1B | ATPAF2 | biogrid_interaction, intact, string_interaction |
| ATP5F1B | MT-ATP8 | intact |
| ATP5F1D | ATP5F1E | intact, string_interaction |
| ATP5F1D | ATPAF2 | string_interaction |
| ATP5F1D | MT-ATP8 | intact |
| ATP5F1E | ATPAF2 | string_interaction |
| ATP5F1E | TMEM70 | string_interaction |
| ATPAF2 | MT-ATP6 | string_interaction |
| ATPAF2 | MT-ATP8 | string_interaction |
| ATPAF2 | TMEM70 | string_interaction |
| MT-ATP6 | MT-ATP8 | string_interaction |
| MT-ATP6 | TMEM70 | string_interaction |
| MT-ATP8 | TMEM70 | string_interaction |
Structural data
PDB: 6 · AlphaFold-only: 2 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| MT-ATP6 | P00846 | 10 |
| MT-ATP8 | P03928 | 10 |
| ATP5F1D | P30049 | 10 |
| ATP5F1E | P56381 | 10 |
| ATP5F1A | P25705 | 9 |
| ATP5F1B | P06576 | 9 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| ATPAF2 | Q8N5M1 | 86.07 |
| TMEM70 | Q9BUB7 | 73.16 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 12. Enrichment computed across 8 evidence-associated genes (6 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 6 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Formation of ATP by chemiosmotic coupling | 6 | 571.0× | 2e-16 | MT-ATP6, MT-ATP8, ATP5F1A, ATP5F1B, ATP5F1D, ATP5F1E |
| Cristae formation | 6 | 346.1× | 2e-15 | MT-ATP6, MT-ATP8, ATP5F1A, ATP5F1B, ATP5F1D, ATP5F1E |
| Mitochondrial biogenesis | 6 | 167.9× | 1e-13 | MT-ATP6, MT-ATP8, ATP5F1A, ATP5F1B, ATP5F1D, ATP5F1E |
| Aerobic respiration and respiratory electron transport | 6 | 88.5× | 6e-12 | MT-ATP6, MT-ATP8, ATP5F1A, ATP5F1B, ATP5F1D, ATP5F1E |
| Organelle biogenesis and maintenance | 6 | 66.0× | 3e-11 | MT-ATP6, MT-ATP8, ATP5F1A, ATP5F1B, ATP5F1D, ATP5F1E |
| Metabolism | 6 | 11.6× | 8e-07 | MT-ATP6, MT-ATP8, ATP5F1A, ATP5F1B, ATP5F1D, ATP5F1E |
| Mitochondrial protein degradation | 3 | 57.1× | 2e-05 | MT-ATP6, ATP5F1A, ATP5F1B |
| Protein localization | 2 | 63.4× | 6e-04 | ATP5F1A, ATP5F1B |
| Mitochondrial protein import | 2 | 56.0× | 7e-04 | ATP5F1A, ATP5F1B |
| Mitochondrial translation termination | 2 | 36.6× | 0.001 | MT-ATP6, MT-ATP8 |
| Metabolism of proteins | 3 | 6.2× | 0.010 | MT-ATP6, ATP5F1A, ATP5F1B |
| Transcriptional activation of mitochondrial biogenesis | 1 | 34.0× | 0.029 | ATP5F1B |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 8 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| proton motive force-driven ATP synthesis | 6 | 601.9× | 1e-15 | MT-ATP6, MT-ATP8, ATP5F1A, ATP5F1B, ATP5F1D, ATP5F1E |
| proton motive force-driven mitochondrial ATP synthesis | 6 | 197.5× | 8e-13 | MT-ATP6, MT-ATP8, ATP5F1A, ATP5F1B, ATP5F1D, ATP5F1E |
| mitochondrial proton-transporting ATP synthase complex assembly | 3 | 789.9× | 3e-08 | ATPAF2, TMEM70, ATP5F1D |
| ATP biosynthetic process | 2 | 247.8× | 2e-04 | ATP5F1A, ATP5F1B |
| positive regulation of blood vessel endothelial cell migration | 2 | 98.0× | 9e-04 | ATP5F1A, ATP5F1B |
| proton transmembrane transport | 2 | 78.0× | 0.001 | MT-ATP6, ATP5F1B |
| proton-transporting ATP synthase complex assembly | 1 | 2106.5× | 0.002 | ATPAF2 |
| negative regulation of cell adhesion involved in substrate-bound cell migration | 1 | 526.6× | 0.006 | ATP5F1B |
| lipid metabolic process | 2 | 22.9× | 0.009 | ATP5F1A, ATP5F1B |
| response to copper ion | 1 | 191.5× | 0.013 | ATP5F1D |
| cellular response to interleukin-7 | 1 | 162.0× | 0.014 | ATP5F1B |
| response to hyperoxia | 1 | 140.4× | 0.015 | MT-ATP6 |
| cellular response to nitric oxide | 1 | 117.0× | 0.016 | ATP5F1A |
| protein complex oligomerization | 1 | 84.3× | 0.020 | TMEM70 |
| regulation of intracellular pH | 1 | 75.2× | 0.020 | ATP5F1B |
| response to muscle activity | 1 | 72.6× | 0.020 | ATP5F1A |
| cellular response to dexamethasone stimulus | 1 | 72.6× | 0.020 | ATP5F1A |
| negative regulation of endothelial cell proliferation | 1 | 68.0× | 0.020 | ATP5F1A |
| mitochondrial respiratory chain complex I assembly | 1 | 51.4× | 0.025 | TMEM70 |
| generation of precursor metabolites and energy | 1 | 43.0× | 0.029 | ATP5F1B |
| aerobic respiration | 1 | 31.0× | 0.038 | ATP5F1D |
| response to ethanol | 1 | 18.3× | 0.061 | ATP5F1A |
| protein homooligomerization | 1 | 15.3× | 0.067 | TMEM70 |
| osteoblast differentiation | 1 | 15.2× | 0.067 | ATP5F1B |
| angiogenesis | 1 | 7.8× | 0.121 | ATP5F1B |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 8
Druggability breadth: 6 of 8 evidence-associated genes (75%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| ATPAF2 | 0 | 0 |
| MT-ATP6 | 0 | 0 |
| MT-ATP8 | 0 | 0 |
| ATP5F1A | 0 | 0 |
| ATP5F1B | 0 | 0 |
| ATP5F1D | 0 | 0 |
| ATP5F1E | 0 | 0 |
| TMEM70 | 0 | 0 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 0.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| ATP5F1A | 6 | Binding:6 |
| ATP5F1B | 5 | Binding:5 |
| MT-ATP6 | 1 | Binding:1 |
| MT-ATP8 | 1 | Binding:1 |
| ATP5F1D | 1 | Binding:1 |
| TMEM70 | 1 | Binding:1 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 8; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 8 | ATPAF2, MT-ATP6, MT-ATP8, ATP5F1A, ATP5F1B, ATP5F1D, ATP5F1E, TMEM70 |
Undrugged target profiles
8 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| ATPAF2 | 0 | — |
| MT-ATP6 | 1 | — |
| MT-ATP8 | 1 | — |
| ATP5F1A | 6 | — |
| ATP5F1B | 5 | — |
| ATP5F1D | 1 | — |
| ATP5F1E | 0 | — |
| TMEM70 | 1 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 0.