Moyamoya disease

disease
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Also known as idiopathic Moyamoya diseaseMoyamoya disease, primaryMoyamoya disease, secondaryMYMYprogressive intracranial arterial occlusion

Summary

Moyamoya disease (MONDO:0016820) is a disease (an umbrella term covering 8 Mondo subtypes) caused by SAMHD1 (GenCC Strong), with 23 cohort genes (83 GWAS associations across 4 studies) and 45 clinical trials. Top therapeutic interventions include sodium chloride and rac-3-n-butylphthalide.

At a glance

  • Prevalence: 1-9 / 100 000 (China) [Orphanet-validated]
  • Causal gene: SAMHD1 (GenCC Strong)
  • Umbrella term: 8 Mondo subtypes
  • Cohort genes: 23
  • GWAS associations: 83
  • ClinVar variants: 6
  • Phenotypes (HPO): 5
  • Clinical trials: 45

Clinical features

Epidemiology

Prevalence records

10 prevalence record(s), Orphanet:

TypeClassValueGeographyValidation
Annual incidence1-9 / 1 000 0000.43ChinaValidated
Annual incidence<1 / 1 000 0000.048Taiwan, Province of ChinaValidated
Annual incidence<1 / 1 000 0000.086United StatesValidated
Point prevalence1-9 / 100 0003.92ChinaValidated
Point prevalence1-9 / 1 000 0000.44Taiwan, Province of ChinaValidated
Point prevalence1-9 / 1 000 0000.33FranceValidated
Annual incidence<1 / 1 000 0000.035EuropeNot yet validated
Point prevalence1-9 / 1 000 000EuropeNot yet validated
Annual incidence1-9 / 1 000 0000.74JapanNot yet validated
Point prevalence1-9 / 100 0006.2JapanNot yet validated

Signs & symptoms

Clinical features (HPO)

5 HPO clinical features (Orphanet curated; top 5 by frequency):

HPO IDTermFrequency
HP:0001009TelangiectasiaVery frequent (80-99%)
HP:0001249Intellectual disabilityFrequent (30-79%)
HP:0001250SeizureFrequent (30-79%)
HP:0002119VentriculomegalyFrequent (30-79%)
HP:0100659Abnormality of the cerebral vasculatureFrequent (30-79%)

Identifiers

Disease identifiers

FieldValue
Canonical nameMoyamoya disease
Mondo IDMONDO:0016820
MeSHD009072
OMIM252350
Orphanet2573
DOIDDOID:13099
ICD-10-CMI67.5
ICD-111746892088, 369231682
NCITC84895
SNOMED CT89142007
UMLSC0026654
MedGen7726
GARD0007064
MedDRA10028047
NORD1457
Is cancer (heuristic)no

Also known as: idiopathic Moyamoya disease · Moyamoya disease, primary · Moyamoya disease, secondary · MYMY · progressive intracranial arterial occlusion

Data availability: 6 ClinVar variants · 83 GWAS associations (4 studies) · 5 GenCC gene-disease records · 13 cell lines.

Disease family

An umbrella term covering 8 Mondo subtypes.

Classification path: disease › human disease › disease by body system or component › nervous system disordercentral nervous system disorderbrain disordercerebrovascular disorderintracranial arterial diseasecerebral arterial diseaseMoyamoya disease

Related subtypes (3): brain aneurysm, middle cerebral artery infarction, posterior cerebral artery infarction

Subtypes (8): moyamoya disease 1, moyamoya angiopathy-short stature-facial dysmorphism-hypergonadotropic hypogonadism syndrome, Moyamoya disease 2, moyamoya disease 3, Moyamoya disease 5, Moyamoya disease with early-onset achalasia, moyamoya disease 7, Moyamoya disease 8

Genetics & variants

GWAS landscape

83 GWAS associations across 4 studies. Top hits map to 24 distinct genes (as reported by GWAS).

Top associations by p-value

rsIDp-valueGeneRisk alleleOdds ratio
rs1127354311e-228RNF213-AS1, RNF213?95.7
rs99163515e-54RNF213A1.96
rs107820082e-44RNF213G2
rs118693637e-38RNF213A1.79
rs21075951e-29HDAC9 - TWIST1A1.64
rs38138031e-24SMPDL3BG1.65
chr5:796160839e-23G20.67
rs743883872e-22MAGI2C1.61
rs1181772095e-21RPL18P1 - ATP5MC2P2A3.59
rs6812391e-20WNT9A - CICP26G1.61
rs413018883e-20ENDOVT9.64
rs118708498e-20ENDOVT9.37
rs754854981e-19RNF115, CD160A30.22
rs96511182e-19MTHFRA1.54
rs75255784e-19RAP1AT14.79
rs99023581e-17CARD14A1.44
rs99079788e-17RNF213A1.59
rs286705518e-17ENDOV - NPTX1T6.63
rs38691453e-16EHMT2, EHMT2-AS1A9.8
rs799944403e-16SDK2A32.06
rs8491391e-15JAZF1A1.43
rs49694262e-14RPTORT1.43
rs98959582e-14ENDOV - NPTX1G4.74
rs2016610143e-14DOCK9A1.41
rs125309203e-14HDAC9 - TWIST1?1.77
rs747902199e-14RNF213G4.47
rs69580102e-13JAZF1A1.37
rs65656818e-13RNF213, RNF213-AS1A4.61
rs96141598e-12HORMAD2 - LIF-AS1A1.4
rs4763822e-11ATP7BP1 - RPS4XP18G1.43

Top studies (by case count)

StudyLead authorYearCasesControlsTitle
GCST005575Duan L20177552,031Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.
GCST90705091Hirano Y202640147,255Integrative GWAS and snRNA-seq Reveal a Mesenchymal-Like Endothelial Signature in Moyamoya Disease.
GCST90310003Jeon JP20232160Genome-wide association study identifies novel susceptibilities to adult moyamoya disease.
GCST000860Kamada F2010720A genome-wide association study identifies RNF213 as the first Moyamoya disease gene.

Variant details and genetic-evidence tiers

Tier distribution (top 50 variants)

TierVariants
Tier 1: coding4
Tier 2: splice/UTR3
Tier 3: regulatory2
Tier 4: intronic/intergenic41

MAF distribution

BucketVariants
common (>=0.05)41
low_freq (0.01-0.05)8
rare (<0.01)0
unknown1

Functional consequences

ConsequenceCount
intron_variant25
unknown9
missense_variant4
non_coding_transcript_exon_variant4
intergenic_variant3
3_prime_UTR_variant3
regulatory_region_variant2

Top variants

rsIDChrPosAllelesMAFConsequenceGenep-valueTier
rs1127354311780385145G>A,Cmissense_variantRNF213-AS1, RNF2131e-228Tier 1: coding
rs99163511780265733T>C0.35intron_variantRNF2135e-54Tier 4: intronic/intergenic
rs107820081780332071G>A0.37missense_variantRNF2132e-44Tier 1: coding
rs118693631780292960A>C,G,T0.5intron_variantRNF2137e-38Tier 4: intronic/intergenic
rs2107595719009765G>A,C,T0.32regulatory_region_variantHDAC9 - TWIST11e-29Tier 3: regulatory
rs3813803127955781T>A,C0.27missense_variantSMPDL3B1e-24Tier 1: coding
chr5:796160830.0469e-23Tier 4: intronic/intergenic
rs74388387779037327A>C0.19intron_variantMAGI22e-22Tier 4: intronic/intergenic
rs1181772091449070901C>T0.04non_coding_transcript_exon_variantRPL18P1 - ATP5MC2P25e-21Tier 4: intronic/intergenic
rs6812391227951971A>C,G,T0.4intergenic_variantWNT9A - CICP261e-20Tier 4: intronic/intergenic
rs413018881780431051C>T0.162intron_variantENDOV3e-20Tier 4: intronic/intergenic
rs118708491780437273C>A,T0.1273_prime_UTR_variantENDOV8e-20Tier 2: splice/UTR
rs754854981145740567C>A,T0.0293_prime_UTR_variantRNF115, CD1601e-19Tier 2: splice/UTR
rs9651118111802157T>A,C0.35intron_variantMTHFR2e-19Tier 4: intronic/intergenic
rs75255781111674339C>T0.057intron_variantRAP1A4e-19Tier 4: intronic/intergenic
rs99023581780182963G>A,C,T0.46intron_variantCARD141e-17Tier 4: intronic/intergenic
rs99079781780327580A>G0.24intron_variantRNF2138e-17Tier 4: intronic/intergenic
rs286705511780454724C>T0.138non_coding_transcript_exon_variantENDOV - NPTX18e-17Tier 4: intronic/intergenic
rs3869145631883577G>A,C,T0.064non_coding_transcript_exon_variantEHMT2, EHMT2-AS13e-16Tier 4: intronic/intergenic
rs799944401773590873G>A0.014intron_variantSDK23e-16Tier 4: intronic/intergenic
rs849139728139777C>T0.46intron_variantJAZF11e-15Tier 4: intronic/intergenic
rs49694261780789008A>C,G,T0.23intron_variantRPTOR2e-14Tier 4: intronic/intergenic
rs98959581780455959A>G,T0.164intergenic_variantENDOV - NPTX12e-14Tier 4: intronic/intergenic
rs2016610141399056316A>C,G0.39intron_variantDOCK93e-14Tier 4: intronic/intergenic
rs12530920719016174A>C,G0.05regulatory_region_variantHDAC9 - TWIST13e-14Tier 3: regulatory
rs747902191780318979A>G0.231intron_variantRNF2139e-14Tier 4: intronic/intergenic
rs6958010728099020T>A,G0.45intron_variantJAZF12e-13Tier 4: intronic/intergenic
rs65656811780374694A>C,G,T0.475intron_variantRNF213, RNF213-AS18e-13Tier 4: intronic/intergenic
rs96141592230205254G>A0.2intron_variantHORMAD2 - LIF-AS18e-12Tier 4: intronic/intergenic
rs4763821822525019T>A,C,G0.23intron_variantATP7BP1 - RPS4XP182e-11Tier 4: intronic/intergenic

ClinVar germline variants

6 retrieved; paginated sample, class counts are floors:

2 uncertain significance, 2 conflicting classifications of pathogenicity, 1 pathogenic, 1 likely pathogenic

ClinVarVariant (HGVS)GeneClassificationReview
1184843NM_001256071.3(RNF213):c.11986_11989delinsGGGTTAG (p.Pro3996_Cys3997delinsGlyLeuGly)RNF213Pathogeniccriteria provided, single submitter
694602GRCh37/hg19 Xq28(chrX:148882560-149686856)x2MAGEA8Likely pathogenicno assertion criteria provided
500968NM_138694.4(PKHD1):c.7091T>A (p.Ile2364Asn)PKHD1Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
550124NM_138694.4(PKHD1):c.9629C>G (p.Ser3210Cys)PKHD1Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
636991NM_001613.4(ACTA2):c.107T>C (p.Ile36Thr)ACTA2Uncertain significancecriteria provided, multiple submitters, no conflicts
1184842NM_001256071.3(RNF213):c.12341C>G (p.Thr4114Arg)RNF213-AS1Uncertain significancecriteria provided, single submitter

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 26 · Orphanet: 31 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 1

Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)

GeneHGNCEvidence routes
RNF213RNF213GWAS, Orphanet

GenCC gene–disease validity (cohort genes)

the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.

GeneClassificationInheritanceDiseaseRecords
SAMHD1StrongAutosomal recessiveMoyamoya disease9
NF1ModerateAutosomal dominantMoyamoya disease9
PCNTModerateAutosomal recessiveMoyamoya disease6
BRCC3LimitedAutosomal dominantMoyamoya disease2

Orphanet rare-disease linkage (cohort genes)

GeneOrphanet IDRare disease
RNF213Orphanet:2573Moyamoya disease
SAMHD1Orphanet:481662Familial Chilblain lupus
SAMHD1Orphanet:51Aicardi-Goutières syndrome
PCNTOrphanet:2637Microcephalic osteodysplastic primordial dwarfism type II
PCNTOrphanet:808Seckel syndrome
BRCC3Orphanet:280679Moyamoya angiopathy-short stature-facial dysmorphism-hypergonadotropic hypogonadism syndrome
NF1Orphanet:13947417q11.2 microduplication syndrome
NF1Orphanet:29072Hereditary pheochromocytoma-paraganglioma
NF1Orphanet:293199Pleomorphic rhabdomyosarcoma
NF1Orphanet:363700Neurofibromatosis type 1 due to NF1 mutation or intragenic deletion
NF1Orphanet:638Neurofibromatosis-Noonan syndrome
NF1Orphanet:86834Juvenile myelomonocytic leukemia
NF1Orphanet:9768517q11 microdeletion syndrome
NF1Orphanet:99756Alveolar rhabdomyosarcoma
NF1Orphanet:99757Embryonal rhabdomyosarcoma
TCN2Orphanet:859Transcobalamin deficiency
ACTA2Orphanet:2573Moyamoya disease
ACTA2Orphanet:404463Multisystemic smooth muscle dysfunction syndrome
ACTA2Orphanet:91387Familial thoracic aortic aneurysm and aortic dissection
CARD14Orphanet:2897Pityriasis rubra pilaris
SBF2Orphanet:99956Charcot-Marie-Tooth disease type 4B2
JAZF1Orphanet:213711Endometrial stromal sarcoma
JAZF1Orphanet:536Systemic lupus erythematosus
LRP1Orphanet:2340Keratosis follicularis spinulosa decalvans
LRP1Orphanet:79100Atrophoderma vermiculata
MTHFROrphanet:395Homocystinuria due to methylene tetrahydrofolate reductase deficiency
MTHFROrphanet:563609Isolated anencephaly
MTHFROrphanet:563612Isolated exencephaly
PKHD1Orphanet:53035Caroli disease
PKHD1Orphanet:731Autosomal recessive polycystic kidney disease
PLOD1Orphanet:1900Kyphoscoliotic Ehlers-Danlos syndrome due to lysyl hydroxylase 1 deficiency

Cohort genes → proteins

23 cohort genes, 22 distinct canonical proteins.

Evidence partition

SubsetGenes
gwas_only14
gwas_and_clinvar1
multi_evidence8

Cohort genes (full)

SymbolHGNCEnsemblUniProtNameEvidence
RNF213HGNC:14539ENSG00000173821Q63HN8E3 ubiquitin-protein ligase RNF213gwas,clinvar
SAMHD1HGNC:15925ENSG00000101347Q9Y3Z3Deoxynucleoside triphosphate triphosphohydrolase SAMHD1gencc
PCNTHGNC:16068ENSG00000160299O95613Pericentringencc
BRCC3HGNC:24185ENSG00000185515P46736Lys-63-specific deubiquitinase BRCC36gencc
NF1HGNC:7765ENSG00000196712P21359Neurofibromingencc
TCN2HGNC:11653ENSG00000185339P20062Transcobalamin-2gwas
ACTA2HGNC:130ENSG00000107796P62736Actin, aortic smooth muscleclinvar
HDAC9HGNC:14065ENSG00000048052Q9UKV0Histone deacetylase 9gwas
SPTLC3HGNC:16253ENSG00000172296Q9NUV7Serine palmitoyltransferase 3gwas
CARD14HGNC:16446ENSG00000141527Q9BXL6Caspase recruitment domain-containing protein 14gwas
SBF2HGNC:2135ENSG00000133812Q86WG5Myotubularin-related protein 13gwas
CTAGE1HGNC:24346ENSG00000212710Q96RT6cTAGE family member 2gwas
HORMAD2HGNC:28383ENSG00000176635Q8N7B1HORMA domain-containing protein 2gwas
JAZF1HGNC:28917ENSG00000153814Q86VZ6Juxtaposed with another zinc finger protein 1gwas
TSC22D2HGNC:29095ENSG00000196428O75157TSC22 domain family protein 2gwas
FADS1HGNC:3574ENSG00000149485O60427Acyl-CoA (8-3)-desaturasegwas
FADS2HGNC:3575ENSG00000134824O95864Acyl-CoA 6-desaturasegwas
RNF213-AS1HGNC:54402ENSG00000263069RNF213 antisense RNA 1clinvar
LRP1HGNC:6692ENSG00000123384Q07954Prolow-density lipoprotein receptor-related protein 1gwas
MAGEA8HGNC:6806ENSG00000156009P43361Melanoma-associated antigen 8clinvar
MTHFRHGNC:7436ENSG00000177000P42898Methylenetetrahydrofolate reductase (NADPH)gwas
PKHD1HGNC:9016ENSG00000170927P08F94Fibrocystinclinvar
PLOD1HGNC:9081ENSG00000083444Q02809Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1gwas

Cohort function summary

Lead sentence per gene, UniProt-curated.

SymbolProtein nameFunction (lead sentence)
RNF213E3 ubiquitin-protein ligase RNF213Atypical E3 ubiquitin ligase that can catalyze ubiquitination of both proteins and lipids, and which is involved in various processes, such as lipid metabolism, angiogenesis and cell-autonomous immunity.
SAMHD1Deoxynucleoside triphosphate triphosphohydrolase SAMHD1Protein that acts both as a host restriction factor involved in defense response to virus and as a regulator of DNA end resection at stalled replication forks.
PCNTPericentrinIntegral component of the filamentous matrix of the centrosome involved in the initial establishment of organized microtubule arrays in both mitosis and meiosis.
BRCC3Lys-63-specific deubiquitinase BRCC36Metalloprotease that specifically cleaves ‘Lys-63’-linked polyubiquitin chains.
NF1NeurofibrominStimulates the GTPase activity of Ras.
TCN2Transcobalamin-2Primary vitamin B12-binding and transport protein.
ACTA2Actin, aortic smooth muscleActins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
HDAC9Histone deacetylase 9Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4).
SPTLC3Serine palmitoyltransferase 3Component of the serine palmitoyltransferase multisubunit enzyme (SPT) that catalyzes the initial and rate-limiting step in sphingolipid biosynthesis by condensing L-serine and activated acyl-CoA (most commonly palmitoyl-CoA) to form long-…
CARD14Caspase recruitment domain-containing protein 14Acts as a scaffolding protein that can activate the inflammatory transcription factor NF-kappa-B and p38/JNK MAP kinase signaling pathways.
SBF2Myotubularin-related protein 13Guanine nucleotide exchange factor (GEF) which activates RAB21 and possibly RAB28.
HORMAD2HORMA domain-containing protein 2Essential for synapsis surveillance during meiotic prophase via the recruitment of ATR activity.
JAZF1Juxtaposed with another zinc finger protein 1Acts as a transcriptional corepressor of orphan nuclear receptor NR2C2.
TSC22D2TSC22 domain family protein 2Reduces the level of nuclear PKM isoform M2 which results in repression of cyclin CCND1 transcription and reduced cell growth.
FADS1Acyl-CoA (8-3)-desaturaseActs as a front-end fatty acyl-coenzyme A (CoA) desaturase that introduces a cis double bond at carbon 5 located between a preexisting double bond and the carboxyl end of the fatty acyl chain.
FADS2Acyl-CoA 6-desaturaseInvolved in the biosynthesis of highly unsaturated fatty acids (HUFA) from the essential polyunsaturated fatty acids (PUFA) linoleic acid (LA) (18:2n-6) and alpha-linolenic acid (ALA) (18:3n-3) precursors, acting as a fatty acyl-coenzyme A…
LRP1Prolow-density lipoprotein receptor-related protein 1Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells.
MAGEA8Melanoma-associated antigen 8Not known, though may play a role in embryonal development and tumor transformation or aspects of tumor progression.
MTHFRMethylenetetrahydrofolate reductase (NADPH)Catalyzes the conversion of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate, a cosubstrate for homocysteine remethylation to methionine.
PKHD1FibrocystinPromotes ciliogenesis in renal epithelial cells and therefore participates in the tubules formation and/ or ensures the maintenance of the architecture of the lumen of the kidney.
PLOD1Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1Part of a complex composed of PLOD1, P3H3 and P3H4 that catalyzes hydroxylation of lysine residues in collagen alpha chains and is required for normal assembly and cross-linkling of collagen fibrils.

Protein-family classification

Druggable: 8 · Difficult: 4 · Unknown: 11 · Druggable fraction: 0.35

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

FamilyGenesFoldFDR
Enzyme (other)52.6×0.266
Phosphatase13.6×0.772
Protease11.6×0.772
Antibody/Immunoglobulin11.3×0.772
Transcription factor31.1×0.772
Other/Unknown110.9×0.837
Scaffold/PPI10.8×0.837

Per-gene assignment

SymbolFamilyDruggable?ECInterPro (top 3)
RNF213Transcription factornoZnf_RING, AAA+_ATPase, Znf_RING/FYVE/PHD
SAMHD1Transcription factorno3.1.5.B1SAM, HD/PDEase_dom, HD_domain
PCNTOther/UnknownnoPACT_domain, AKAP9/Pericentrin
BRCC3ProteaseyesJAMM/MPN+_dom, MPN_BRCC36, MPN
NF1Other/UnknownnoCRAL-TRIO_dom, RasGAP_dom, Rho_GTPase_activation_prot
TCN2Other/UnknownnoCbl-bd_prot, Terpenoid_cyclase/PrenylTrfase, Cobalamin_Transport
ACTA2Other/UnknownnoActin, Actin_CS, Actin/actin-like_CS
HDAC9Enzyme (other)yes3.5.1.98HDACs, Ureohydrolase_dom_sf, His_deacetylse_dom
SPTLC3Enzyme (other)yes2.3.1.50Aminotrans_II_pyridoxalP_BS, Aminotransferase_I/II_large, PyrdxlP-dep_Trfase_major
CARD14Scaffold/PPInoCARD, PDZ, Guanylate_kin-like_dom
SBF2PhosphataseyescDENN_dom, PH_domain, GRAM
CTAGE1Other/UnknownnocTAGE_MIA/OTOR
HORMAD2Other/UnknownnoHORMA_dom, HORMA_dom_sf, HORMA_MeioticProgression
JAZF1Transcription factornoZnf_C2H2_type, Znf_C2H2_sf, ZnF-Chromatin_assoc
TSC22D2Other/UnknownnoTSC22/Bun, TSC22/BUN_CS, TSC22_domain_protein_2
FADS1Enzyme (other)yes1.14.19.30Cyt_B5-like_heme/steroid-bd, FA_desaturase_dom, Fatty_acid_desaturase
FADS2Enzyme (other)yes1.14.19.3Cyt_B5-like_heme/steroid-bd, FA_desaturase_dom, Fatty_acid_desaturase
RNF213-AS1Other/Unknownno
LRP1Other/UnknownnoLDLR_classB_rpt, EGF-type_Asp/Asn_hydroxyl_site, EGF
MAGEA8Other/UnknownnoMHD_dom, MAGE_N, MAGE
MTHFREnzyme (other)yes1.5.1.20Mehydrof_redctse-like, Fadh2_euk, FAD-linked_oxidoreductase-like
PKHD1Antibody/ImmunoglobulinyesIPT_dom, PbH1, Pectin_lyase_fold/virulence
PLOD1Other/UnknownnoProcol_lys_dOase, Oxoglu/Fe-dep_dioxygenase_dom, Pro_4_hyd_alph

Expression context

Cohort genes with no expression data: 0.

19 cohort genes are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

BucketGenes
narrow (1-5 tissues)0
moderate (6-20)1
broad (>20)22
unknown0

Top tissues across cohort

TissueCohort genes
buccal mucosa cell4
metanephros cortex3
monocyte2
calcaneal tendon2
colonic epithelium2
cauda epididymis2
oocyte2
secondary oocyte2
placenta2
skin of abdomen2
left testis2
right testis2
testis2
right adrenal gland cortex2
sural nerve2
stromal cell of endometrium2
apex of heart2
granulocyte1
pancreatic ductal cell1
mononuclear cell1

Per-gene tissue summary (top 30)

SymbolBgee breadthFANTOM5 breadthSCXATop tissues
RNF213252ubiquitousmarkergranulocyte, metanephros cortex, pancreatic ductal cell
SAMHD1291ubiquitousmarkermonocyte, mononuclear cell, pericardium
PCNT283ubiquitousmarkergastrocnemius, body of tongue, hindlimb stylopod muscle
BRCC3281ubiquitousmarkerparotid gland, oral cavity, buccal mucosa cell
NF1283ubiquitousmarkercolonic epithelium, calcaneal tendon, adrenal tissue
TCN2198ubiquitousmarkergall bladder, metanephros cortex, right lung
ACTA2289ubiquitousmarkercauda epididymis, blood vessel layer, saphenous vein
HDAC9277ubiquitousmarkeroocyte, monocyte, secondary oocyte
SPTLC3228ubiquitousmarkerbuccal mucosa cell, placenta, skin of abdomen
CARD14179tissue_specificyeslower esophagus mucosa, skin of leg, skin of abdomen
SBF2257ubiquitousmarkerepithelial cell of pancreas, colonic epithelium, calcaneal tendon
CTAGE113tissue_specificyesright testis, left testis, testis
HORMAD266tissue_specificmarkerright testis, left testis, testis
JAZF1251ubiquitousmarkertrabecular bone tissue, cauda epididymis, right adrenal gland cortex
TSC22D2289ubiquitousmarkerbuccal mucosa cell, secondary oocyte, oocyte
FADS1280ubiquitousmarkerupper leg skin, ventral tegmental area, superior vestibular nucleus
FADS2229ubiquitousmarkerright adrenal gland cortex, right adrenal gland, left adrenal gland cortex
RNF213-AS1169broadyesbuccal mucosa cell, right uterine tube, sural nerve
LRP1293ubiquitousmarkerstromal cell of endometrium, descending thoracic aorta, ascending aorta
MAGEA876tissue_specificyesplacenta, primordial germ cell in gonad, decidua
MTHFR254ubiquitousmarkercorpus epididymis, sural nerve, apex of heart
PKHD151tissue_specificmarkerkidney epithelium, renal medulla, metanephros cortex
PLOD1279ubiquitousmarkerstromal cell of endometrium, smooth muscle tissue, apex of heart

Protein interactions among cohort

Intra-cohort edges: 2.

Hub genes (top 10 by interactor count)

SymbolInteractor count
NF15,540
PCNT3,934
MTHFR3,492
BRCC33,428
HDAC93,047
LRP12,662
RNF2132,368
SAMHD12,186
PLOD11,929
CARD141,902

Intra-cohort edges

ABSources
MTHFRTCN2string_interaction
NF1RNF213string_interaction

Structural data

PDB: 9 · AlphaFold-only: 13 · No structure: 1

Cohort genes with PDB structures (top 30)

SymbolUniProtPDB entries
SAMHD1Q9Y3Z376
NF1P2135926
TCN2P2006211
LRP1Q079547
RNF213Q63HN84
BRCC3P467364
MTHFRP428984
HDAC9Q9UKV02
MAGEA8P433611

AlphaFold-only cohort genes (top 30 by pLDDT)

SymbolUniProtpLDDT
ACTA2P6273695.43
FADS2O9586495.39
FADS1O6042794.82
PLOD1Q0280993.04
SPTLC3Q9NUV787.25
CARD14Q9BXL675.89
SBF2Q86WG573.74
HORMAD2Q8N7B172.61
CTAGE1Q96RT670.45
JAZF1Q86VZ670.25
TSC22D2O7515748.04
PCNTO95613
PKHD1P08F94

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 98. Enrichment computed across 23 evidence-associated genes (15 with Reactome annotation).

Pathways by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 15 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

PathwayCohort genesFoldFDRSample cohort genes
Linoleic acid (LA) metabolism2152.3×0.007FADS1, FADS2
alpha-linolenic acid (ALA) metabolism295.2×0.008FADS1, FADS2
Metabolism of vitamins and cofactors323.3×0.008TCN2, LRP1, MTHFR
Metabolism64.7×0.025TCN2, SAMHD1, SPTLC3, SBF2, LRP1, MTHFR
Defective TCN2 causes TCN2 deficiency1761.3×0.026TCN2
Defective CD320 causes MMATC1380.7×0.042TCN2
Metabolism of water-soluble vitamins and cofactors224.2×0.042TCN2, MTHFR
RAS signaling downstream of NF1 loss-of-function variants1108.8×0.093NF1
Suppression of apoptosis1108.8×0.093RNF213
Response of Mtb to phagocytosis195.2×0.093RNF213
Transport of RCbl within the body195.2×0.093TCN2
Nucleotide catabolism184.6×0.096SAMHD1
Infection with Mycobacterium tuberculosis176.1×0.098RNF213
Regulation of CDH1 Function163.4×0.110ACTA2
Scavenging of heme from plasma158.6×0.111LRP1
Defects in cobalamin (B12) metabolism154.4×0.112TCN2
Cobalamin (Cbl, vitamin B12) transport and metabolism142.3×0.117TCN2
Metabolism of folate and pterines142.3×0.117MTHFR
Defects in vitamin and cofactor metabolism140.1×0.117TCN2
NOTCH4 Intracellular Domain Regulates Transcription138.1×0.117ACTA2
Binding and Uptake of Ligands by Scavenger Receptors136.2×0.117LRP1
Developmental Lineage of Mammary Gland Myoepithelial Cells136.2×0.117ACTA2
Signaling by NOTCH4133.1×0.117ACTA2
Chaperone Mediated Autophagy133.1×0.117PCNT
Diseases of signal transduction by growth factor receptors and second messengers27.6×0.117RNF213, NF1
DNA Double Strand Break Response131.7×0.117BRCC3
Notch-HLH transcription pathway127.2×0.128HDAC9
Metabolism of fat-soluble vitamins125.4×0.128LRP1
Rab regulation of trafficking124.6×0.128SBF2
PI Metabolism123.8×0.128SBF2

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 22 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO termCohort genesFoldFDRSample cohort genes
regulation of cell-matrix adhesion2117.8×0.017NF1, PKHD1
lipid metabolic process416.6×0.017JAZF1, FADS1, FADS2, LRP1
arachidonate metabolite production involved in inflammatory response1766.0×0.020FADS2
positive regulation of mast cell apoptotic process1766.0×0.020NF1
regulation of glial cell differentiation1766.0×0.020NF1
sphingoid biosynthetic process1766.0×0.020SPTLC3
regulation of striated muscle cell differentiation1766.0×0.020HDAC9
positive regulation of hepatic stellate cell contraction1766.0×0.020ACTA2
observational learning1766.0×0.020NF1
lipid ubiquitination1766.0×0.020RNF213
positive regulation of cellular response to oxidative stress1766.0×0.020FADS2
regulation of cholangiocyte proliferation1766.0×0.020PKHD1
positive regulation of transcytosis1766.0×0.020LRP1
alpha-linolenic acid metabolic process280.6×0.020FADS1, FADS2
linoleic acid metabolic process263.8×0.020FADS1, FADS2
unsaturated fatty acid biosynthetic process258.9×0.020FADS1, FADS2
regulation of ERK1 and ERK2 cascade252.8×0.020NF1, PKHD1
long-chain fatty acid biosynthetic process240.3×0.020FADS1, FADS2
response to hypoxia313.1×0.021MTHFR, NF1, PLOD1
dGTP catabolic process1383.0×0.026SAMHD1
deoxyribonucleotide catabolic process1383.0×0.026SAMHD1
positive regulation of lipid transport1383.0×0.026LRP1
response to vitamin B21383.0×0.026MTHFR
dATP catabolic process1383.0×0.026SAMHD1
gamma-aminobutyric acid secretion, neurotransmission1383.0×0.026NF1
positive regulation of hepatic stellate cell migration1383.0×0.026ACTA2
positive regulation of reverse cholesterol transport1383.0×0.026LRP1
Schwann cell proliferation1255.3×0.028NF1
forebrain astrocyte development1255.3×0.028NF1
Schwann cell migration1255.3×0.028NF1

Therapeutics

Drug target analysis

Approved (phase 4): 1 · Phase ≥3: 1 · Phased (≥1): 1 · Undrugged: 22

Druggability breadth: 9 of 23 evidence-associated genes (39%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Genes with an approved drug

The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.

SymbolExample approved molecule
HDAC9CELECOXIB

Top cohort targets by molecule count

SymbolMoleculesMax phase
HDAC9284
RNF21300
SAMHD100
PCNT00
BRCC300
NF100
TCN200
ACTA200
SPTLC300
CARD1400

Drugs targeting cohort genes (top 30)

MoleculeMax phaseTargets in cohort
CELECOXIB4HDAC9
PHENYLBUTANOIC ACID4HDAC9
SODIUM PHENYLBUTYRATE4HDAC9
ROMIDEPSIN4HDAC9
BELINOSTAT4HDAC9
PANOBINOSTAT4HDAC9
VORINOSTAT4HDAC9
GIVINOSTAT4HDAC9
CURCUMIN3HDAC9
CAFFEIC ACID3HDAC9
PRACINOSTAT3HDAC9
TACEDINALINE3HDAC9
ENTINOSTAT3HDAC9
TUCIDINOSTAT3HDAC9
ABEXINOSTAT3HDAC9
EBSELEN3HDAC9
NANATINOSTAT2HDAC9
AR-422HDAC9
CHLOROGENIC ACID2HDAC9
DACINOSTAT2HDAC9
FIMEPINOSTAT2HDAC9
QUISINOSTAT2HDAC9
DOMATINOSTAT2HDAC9
PYROXAMIDE1HDAC9
CUDC-1011HDAC9
R-3064651HDAC9
GAMMA-AMINOBUTYRIC ACID1HDAC9
TRICHOSTATIN1HDAC9

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 6.

Cohort genes with ChEMBL bioactivity (full, sorted by assay count)

SymbolAssaysType breakdown
HDAC91,625Binding:1612, ADMET:8, Functional:4, Toxicity:1
FADS121Binding:21
FADS211Binding:11
SAMHD14Binding:3, Functional:1
RNF2131Binding:1
BRCC31Binding:1
SPTLC31Binding:1
PLOD11Binding:1

Cohort enzymes (BRENDA EC)

SymbolEC numbersNames
SAMHD13.1.5.B1
HDAC93.5.1.98histone deacetylase
SPTLC32.3.1.50serine C-palmitoyltransferase
FADS11.14.19.30acyl-lipid (8-3)-desaturase
FADS21.14.19.3acyl-CoA 6-desaturase
MTHFR1.5.1.20, 1.5.1.53methylenetetrahydrofolate reductase [NAD(P)H], methylenetetrahydrofolate reductase (NADPH)

Cohort genes with high screening signal

≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.

SymbolChEMBL assays
HDAC91,625

Pharmacogenomics

Cohort genes with a PharmGKB record: 22; with CPIC/DPWG dosing guidelines: 0.

No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).

Chemical tractability of cohort targets

28 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

CompoundMax phaseCohort target (bioactivity)
CELECOXIB4HDAC9
PHENYLBUTANOIC ACID4HDAC9
SODIUM PHENYLBUTYRATE4HDAC9
ROMIDEPSIN4HDAC9
BELINOSTAT4HDAC9
PANOBINOSTAT4HDAC9
VORINOSTAT4HDAC9
GIVINOSTAT4HDAC9
CURCUMIN3HDAC9
CAFFEIC ACID3HDAC9
PRACINOSTAT3HDAC9
TACEDINALINE3HDAC9
ENTINOSTAT3HDAC9
TUCIDINOSTAT3HDAC9
ABEXINOSTAT3HDAC9
EBSELEN3HDAC9
NANATINOSTAT2HDAC9
AR-422HDAC9
CHLOROGENIC ACID2HDAC9
DACINOSTAT2HDAC9
FIMEPINOSTAT2HDAC9
QUISINOSTAT2HDAC9
DOMATINOSTAT2HDAC9
PYROXAMIDE1HDAC9
CUDC-1011HDAC9
R-3064651HDAC9
GAMMA-AMINOBUTYRIC ACID1HDAC9
TRICHOSTATIN1HDAC9

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

TierDefinitionGenesSymbols
AApproved (phase 4 drug)1HDAC9
BPhased (≥1) drug, not yet approved0
CDruggable family + PDB, no drug2BRCC3, MTHFR
DDruggable family + AlphaFold only, no drug5SPTLC3, SBF2, FADS1, FADS2, PKHD1
EDifficult family or no structure, no drug15RNF213, SAMHD1, PCNT, NF1, TCN2, ACTA2, CARD14, CTAGE1, HORMAD2, JAZF1 (+5 more)

Undrugged target profiles

22 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

SymbolChEMBL assaysDrugged partners (top 3)
RNF2131
SAMHD14
PCNT0
BRCC31
NF10
TCN20
ACTA20
SPTLC31
CARD140
SBF20
CTAGE10
HORMAD20
JAZF10
TSC22D20
FADS121
FADS211
RNF213-AS10
LRP10
MAGEA80
MTHFR0
PKHD10
PLOD11

Clinical trials & evidence

Clinical trials

Clinical trials: 45.

Phase distribution (across all retrieved trials)

PhaseTrials
Not specified41
PHASE12
PHASE31
PHASE1/PHASE21

Top trials by phase / activity

NCTPhaseStatusTitle
NCT04205578PHASE3UNKNOWNNBP in Patients With Moyamoya Disease of High Risk for Ischemic Cerebrovascular Events
NCT03162588PHASE1/PHASE2COMPLETEDMultiple Burrhole Therapy With Erythropoietin for Unstable Moyamoya
NCT07065409PHASE1RECRUITINGTreatment of Moyamoya Disease With iPSC-derived Exosomes
NCT07286110PHASE1NOT_YET_RECRUITINGChinese Herbal Therapy (Qiqi Shengmai Formula) for Moyamoya Vasculopathy: The CHIMES Trial
NCT01793168Not specifiedRECRUITINGRare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford
NCT03546309Not specifiedRECRUITINGSafety and Efficacy of RIC in Pediatric Moyamoya Disease Patients Treated With Revascularization Therapy
NCT05332756Not specifiedRECRUITINGLong-term Outcomes of Conservative Management in Patients with Moyamoya Disease and Their First-degree Relatives (LAMORA)
NCT05491980Not specifiedACTIVE_NOT_RECRUITINGFlorida Cerebrovascular Disease Biorepository and Genomics Center
NCT05619068Not specifiedRECRUITINGThe Evolution and Prognosis of Moyamoya Disease
NCT05961748Not specifiedRECRUITINGRegistry of Multicenter Brain-Heart Comorbidity in China
NCT06041659Not specifiedRECRUITINGFunctional Magnetic Resonance-Based Observations of Brain Networks in Moyamoya Disease Patients Under Anesthesia
NCT06051552Not specifiedNOT_YET_RECRUITINGPrognostic Prediction Model in Patients With Moyamoya Disease Undergoing Revascularization Surgery
NCT06330818Not specifiedRECRUITINGImaging in Moyamoya Disease - Study to Investigate Different Imaging Technologies for a Better Understanding of Various Imaging Techniques to Evaluate Cerebral Hemodynamics, Disease-activity and Possibly the Etiology in Moyamoya Patients
NCT06477107Not specifiedENROLLING_BY_INVITATIONA Study of Cerebral Perfusion With tDCS in Chronic Hypoperfusion
NCT06634004Not specifiedENROLLING_BY_INVITATIONBiomarker-Led Optimization of Successful Surgical Outcomes in Moyamoya
NCT06714097Not specifiedRECRUITINGApplication of Digital Twins’ Technology in Patients Who Had a Stroke, With Moyamoya Disease and With Cerebral Amyloid Angiopathy (CAA) During the Secondary Prevention Phase: A Proof of Concept Using a Randomized Control Trial (Clinical Study 6, STRATIF-AI Project)
NCT06724029Not specifiedRECRUITINGNeurosurgical Outcome Network
NCT06817434Not specifiedRECRUITINGStudy on Evaluating the Effectiveness of Statins in the Treatment of Moyamoya Disease
NCT06832839Not specifiedRECRUITINGStudy on the Mechanism of Cognitive Impairment in Patients with Moyamoya Disease
NCT07140731Not specifiedRECRUITINGThe Symani Restore Study
NCT07144930Not specifiedRECRUITINGCognitive-Motor Incorporated Training and Its Relations in Cerebrovascular Diseases With Cognitive and Motor Impairments
NCT07304947Not specifiedRECRUITINGCardiac Index-Guided Intraoperative Hemodynamic Management in Pediatric Moyamoya Surgery
NCT07377695Not specifiedRECRUITINGRemimazolam Consumption: TCI vs. Manual Infusion
NCT07517354Not specifiedRECRUITINGFamily-Based Moyamoya Susceptibility and Early Detection
NCT01419275Not specifiedCOMPLETEDQuantifying Collateral Perfusion in Cerebrovascular Disease-Moyamoya Disease and Stroke Patients
NCT02074111Not specifiedUNKNOWNMoyamoya Disease Biomarkers in Patients With Intracranial Atherosclerotic Stroke
NCT02305407Not specifiedUNKNOWNNeurocognitive and Radiological Assessments in Adult Moyamoya Undergoing Surgery
NCT02510586Not specifiedUNKNOWNSevoflurane and Hyperperfusion Syndrome
NCT02982135Not specifiedUNKNOWNDirect Bypass Versus Indirect Bypass in Treatment of Adults Hemorrhagic Moyamoya Disease
NCT03072914Not specifiedCOMPLETEDEffects of Remote Ischemic Preconditioning With Postconditioning on Neurologic Outcome
NCT03516851Not specifiedWITHDRAWNPrecision Bypass in Patients With Moyamoya Disease
NCT03543748Not specifiedUNKNOWNEfficacy and Safety of rTMS for Cognitive Rehabilitation in Moyamoya Disease
NCT03613701Not specifiedUNKNOWNRelationship Between Endothelial Progenitor Cells and Revascularization Effect of Moyamoya Disease
NCT03627975Not specifiedUNKNOWNEffect of Surgical Revascularization on Hemorrhagic Moyamoya Disease
NCT03785171Not specifiedUNKNOWNPredicative Value of Multimodal MRI in Moyamoya Disease
NCT03821181Not specifiedUNKNOWNThe Effect of RIC on TIA/Stroke in Children With Moyamoya Disease
NCT03882060Not specifiedUNKNOWNEffect of Recombinant Human EPO on the Postoperative Neurologic Outcome in Pediatric Moyamoya Patients
NCT04012268Not specifiedCOMPLETEDThe Safety and Efficacy of RIC on Adult Moyamoya Disease
NCT04064658Not specifiedSUSPENDEDEffects of Remote Ischemic Pre-Conditioning in Moyamoya Disease Patients
NCT04696094Not specifiedUNKNOWNThe Role of m6A RNA Modification in Moyamoya Disease

Drugs tested across these trials (top 30)

MoleculeMax phaseTrials referencing
SODIUM CHLORIDE41
RAC-3-N-BUTYLPHTHALIDE31