Summary
nodular sclerosis classical Hodgkin lymphoma (MONDO:0004665) is a cancer with 10 cohort genes (11 GWAS associations across 3 studies; 3 CIViC-evidence somatic drivers) and 2 clinical trials. The dominant Reactome pathway is Translocation of ZAP-70 to Immunological synapse (3 cohort genes). Top therapeutic interventions include fludeoxyglucose f 18, ifosfamide, and vinblastine sulfate.
At a glance
- Classification: Cancer
- Prevalence: 1-9 / 100 000 (Europe) [Orphanet-validated]
- Cohort genes: 10
- GWAS associations: 11
- Clinical trials: 2
Clinical features
Epidemiology
Prevalence records
1 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|
| Annual incidence | 1-9 / 100 000 | 1.28 | Europe | Validated |
Identifiers
Disease identifiers
| Field | Value |
|---|
| Canonical name | nodular sclerosis classical Hodgkin lymphoma |
| Mondo ID | MONDO:0004665 |
| EFO | EFO:0004708 |
| Orphanet | 98843 |
| DOID | DOID:8838 |
| ICD-10-CM | C81.1 |
| ICD-11 | 1995941600 |
| NCIT | C3518 |
| SNOMED CT | 118608000 |
| UMLS | C0152268 |
| MedGen | 101830 |
| GARD | 0019591 |
| Is cancer (heuristic) | yes |
Also known as: Hodgkin lymphoma, nodular sclerosis · Hodgkin’s disease nodular sclerosis · Hodgkin’s disease, nodular sclerosis NOS (morphologic abnormality) · Hodgkin’s disease, nodular sclerosis of unspecified site · Hodgkin’s nodular sclerosis · nodular sclerosis Classic Hodgkin lymphoma · nodular sclerosis classical Hodgkin lymphoma · nodular sclerosis Hodgkin lymphoma · nodular sclerosis Hodgkin’s disease · nodular sclerosis Hodgkin’s lymphoma · NSCHL · NSHD · NSHL
Data availability: 11 GWAS associations (3 studies).
Disease family
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › classic Hodgkin lymphoma › nodular sclerosis classical Hodgkin lymphoma
Related subtypes (3): Hodgkin’s lymphoma, lymphocytic-histiocytic predominance, Hodgkin’s lymphoma, lymphocytic depletion, Hodgkin’s lymphoma, mixed cellularity
Genetics & variants
GWAS landscape
11 GWAS associations across 3 studies. Top hits map to 6 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|
| rs9269081 | 2e-39 | HLA-DRB9 | ? | 1.82 |
| rs9268528 | 8e-18 | TSBP1-AS1 - HLA-DRA; HLA-DRB1 - HLA-DQA1; HLA-DRB9; FKBPL - PPT2; TSBP1-AS1 - HLA-DRA | A | 2.5 |
| DPB1*03:01 | 3e-17 | | ? | 1.89 |
| rs4459895 | 9e-17 | LPP | A | 1.39 |
| Val86 HLA-DRB1 | 4e-13 | | ? | 1.43 |
| rs3781093 | 9e-13 | GATA3 | T | 1.39 |
| rs6928977 | 5e-11 | AHI1 | G | 1.23 |
| rs34972832 | 2e-08 | CLEC16A | A | 1.24 |
| rs112998813 | 5e-08 | UPF3A | C | 1.39 |
| rs9482849 | 4e-06 | THEMIS - PTPRK | C | 1.21 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|
| GCST005211 | Sud A | 2017 | 1,278 | 14,325 | Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility. |
| GCST001323 | Cozen W | 2011 | 393 | 3,315 | A genome-wide meta-analysis of nodular sclerosing Hodgkin lymphoma identifies risk loci at 6p21.32. |
| GCST90043904 | Jiang L | 2021 | 126 | 456,222 | A generalized linear mixed model association tool for biobank-scale data. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|
| Tier 1: coding | 0 |
| Tier 2: splice/UTR | 0 |
| Tier 3: regulatory | 1 |
| Tier 4: intronic/intergenic | 9 |
MAF distribution
| Bucket | Variants |
|---|
| common (>=0.05) | 8 |
| low_freq (0.01-0.05) | 0 |
| rare (<0.01) | 0 |
| unknown | 2 |
Functional consequences
| Consequence | Count |
|---|
| intron_variant | 5 |
| unknown | 2 |
| non_coding_transcript_exon_variant | 1 |
| intron_variant; regulatory_region_variant; intron_variant; intergenic_variant; intron_variant | 1 |
| intergenic_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|
| rs9269081 | 6 | 32473323 | A>C,G | 0.05 | non_coding_transcript_exon_variant | HLA-DRB9 | 2e-39 | Tier 4: intronic/intergenic |
| rs9268528 | 6;6;6;6;6 | 32415331 | A>G,T | 0.05 | intron_variant; regulatory_region_variant; intron_variant; intergenic_variant; intron_variant | TSBP1-AS1 - HLA-DRA; HLA-DRB1 - HLA-DQA1; HLA-DRB9; FKBPL - PPT2; TSBP1-AS1 - HLA-DRA | 8e-18 | Tier 3: regulatory |
| DPB1*03:01 | | | | | | | 3e-17 | Tier 4: intronic/intergenic |
| rs4459895 | 3 | 188236626 | A>C,G,T | 0.19 | intron_variant | LPP | 9e-17 | Tier 4: intronic/intergenic |
| Val86 HLA-DRB1 | | | | | | | 4e-13 | Tier 4: intronic/intergenic |
| rs3781093 | 10 | 8059964 | T>C | 0.14 | intron_variant | GATA3 | 9e-13 | Tier 4: intronic/intergenic |
| rs6928977 | 6 | 135305210 | T>C,G | 0.43 | intron_variant | AHI1 | 5e-11 | Tier 4: intronic/intergenic |
| rs34972832 | 16 | 11105081 | G>A,T | 0.19 | intron_variant | CLEC16A | 2e-08 | Tier 4: intronic/intergenic |
| rs112998813 | 13 | 114294254 | T>C | 0.07 | intron_variant | UPF3A | 5e-08 | Tier 4: intronic/intergenic |
| rs9482849 | 6 | 127967391 | T>C | 0.15 | intergenic_variant | THEMIS - PTPRK | 4e-06 | Tier 4: intronic/intergenic |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 27 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 3
Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)
| Gene | HGNC | Evidence routes |
|---|
| GATA3 | GATA3 | GWAS, Orphanet |
| HLA-DQB1 | HLA-DQB1 | GWAS, Orphanet |
| HLA-DRB1 | HLA-DRB1 | GWAS, Orphanet |
Somatic driver evidence (intOGen + CIViC, cohort fanout)
| Gene | intOGen role | Cancer types | CIViC |
|---|
| GATA3 | Act | ALL,BRCA | CIViC #2189 |
| HLA-DRA | | | CIViC #2622 |
| PTPRK | LoF | BLCA,CCRCC,NSCLC | |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|
| AHI1 | Orphanet:220493 | Joubert syndrome with ocular defect |
| AHI1 | Orphanet:475 | Isolated Joubert syndrome |
| AHI1 | Orphanet:791 | Retinitis pigmentosa |
| GATA3 | Orphanet:2237 | Hypoparathyroidism-sensorineural deafness-renal disease syndrome |
| GATA3 | Orphanet:585936 | B-lymphoblastic leukemia/lymphoma with hyperdiploidy |
| HLA-DPB1 | Orphanet:133 | Chronic beryllium disease |
| HLA-DPB1 | Orphanet:900 | Granulomatosis with polyangiitis |
| HLA-DQB1 | Orphanet:2073 | Narcolepsy type 1 |
| HLA-DQB1 | Orphanet:477738 | Pediatric multiple sclerosis |
| HLA-DQB1 | Orphanet:703 | Bullous pemphigoid |
| HLA-DQB1 | Orphanet:83465 | Narcolepsy type 2 |
| HLA-DQB1 | Orphanet:930 | Idiopathic achalasia |
| HLA-DRA | Orphanet:505 | Graham Little-Piccardi-Lassueur syndrome |
| HLA-DRB1 | Orphanet:2073 | Narcolepsy type 1 |
| HLA-DRB1 | Orphanet:220393 | Diffuse cutaneous systemic sclerosis |
| HLA-DRB1 | Orphanet:220402 | Limited cutaneous systemic sclerosis |
| HLA-DRB1 | Orphanet:220407 | Limited systemic sclerosis |
| HLA-DRB1 | Orphanet:3437 | Vogt-Koyanagi-Harada disease |
| HLA-DRB1 | Orphanet:397 | Giant cell arteritis |
| HLA-DRB1 | Orphanet:477738 | Pediatric multiple sclerosis |
| HLA-DRB1 | Orphanet:536 | Systemic lupus erythematosus |
| HLA-DRB1 | Orphanet:545 | Follicular lymphoma |
| HLA-DRB1 | Orphanet:703 | Bullous pemphigoid |
| HLA-DRB1 | Orphanet:747 | Autoimmune pulmonary alveolar proteinosis |
| HLA-DRB1 | Orphanet:797 | Sarcoidosis |
| HLA-DRB1 | Orphanet:83465 | Narcolepsy type 2 |
| HLA-DRB1 | Orphanet:85414 | Systemic-onset juvenile idiopathic arthritis |
Cohort genes → proteins
10 cohort genes, 10 distinct canonical proteins.
Evidence partition
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|
| UPF3A | HGNC:20332 | ENSG00000169062 | Q9H1J1 | Regulator of nonsense transcripts 3A | gwas |
| AHI1 | HGNC:21575 | ENSG00000135541 | Q8N157 | Jouberin | gwas |
| CLEC16A | HGNC:29013 | ENSG00000038532 | Q2KHT3 | Protein CLEC16A | gwas |
| GATA3 | HGNC:4172 | ENSG00000107485 | P23771 | Trans-acting T-cell-specific transcription factor GATA-3 | gwas |
| HLA-DPB1 | HGNC:4940 | ENSG00000223865 | P04440 | HLA class II histocompatibility antigen, DP beta 1 chain | gwas |
| HLA-DQB1 | HGNC:4944 | ENSG00000179344 | P01920 | HLA class II histocompatibility antigen, DQ beta 1 chain | gwas |
| HLA-DRA | HGNC:4947 | ENSG00000204287 | P01903 | HLA class II histocompatibility antigen, DR alpha chain | gwas |
| HLA-DRB1 | HGNC:4948 | ENSG00000196126 | P01911 | HLA class II histocompatibility antigen, DRB1 beta chain | gwas |
| LPP | HGNC:6679 | ENSG00000145012 | Q93052 | Lipoma-preferred partner | gwas |
| PTPRK | HGNC:9674 | ENSG00000152894 | Q15262 | Receptor-type tyrosine-protein phosphatase kappa | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|
| UPF3A | Regulator of nonsense transcripts 3A | Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons by associating with the nuclear exon junction complex (EJC) and serving as link between the EJC core and NMD machinery. |
| AHI1 | Jouberin | Involved in vesicle trafficking and required for ciliogenesis, formation of primary non-motile cilium, and recruitment of RAB8A to the basal body of primary cilium. |
| CLEC16A | Protein CLEC16A | Regulator of mitophagy through the upstream regulation of the RNF41/NRDP1-PRKN pathway. |
| GATA3 | Trans-acting T-cell-specific transcription factor GATA-3 | Transcriptional activator which binds to the enhancer of the T-cell receptor alpha and delta genes. |
| HLA-DPB1 | HLA class II histocompatibility antigen, DP beta 1 chain | Binds peptides derived from antigens that access the endocytic route of antigen presenting cells (APC) and presents them on the cell surface for recognition by the CD4 T-cells. |
| HLA-DQB1 | HLA class II histocompatibility antigen, DQ beta 1 chain | Binds peptides derived from antigens that access the endocytic route of antigen presenting cells (APC) and presents them on the cell surface for recognition by the CD4 T-cells. |
| HLA-DRA | HLA class II histocompatibility antigen, DR alpha chain | An alpha chain of antigen-presenting major histocompatibility complex class II (MHCII) molecule. |
| HLA-DRB1 | HLA class II histocompatibility antigen, DRB1 beta chain | A beta chain of antigen-presenting major histocompatibility complex class II (MHCII) molecule. |
| LPP | Lipoma-preferred partner | May play a structural role at sites of cell adhesion in maintaining cell shape and motility. |
| PTPRK | Receptor-type tyrosine-protein phosphatase kappa | Regulation of processes involving cell contact and adhesion such as growth control, tumor invasion, and metastasis. |
Protein-family classification
Druggable: 5 · Difficult: 3 · Unknown: 2 · Druggable fraction: 0.5
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|
| Antibody/Immunoglobulin | 4 | 11.7× | 0.001 |
| Phosphatase | 1 | 8.4× | 0.283 |
| Scaffold/PPI | 1 | 1.7× | 0.561 |
| Transcription factor | 2 | 1.6× | 0.561 |
| Other/Unknown | 2 | 0.4× | 0.996 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|
| UPF3A | Other/Unknown | no | | UPF3_dom, Nucleotide-bd_a/b_plait_sf, RBD_domain_sf |
| AHI1 | Scaffold/PPI | no | | SH3_domain, WD40_rpt, WD40/YVTN_repeat-like_dom_sf |
| CLEC16A | Other/Unknown | no | | CLEC16A/TT9_N, CLEC16A/TT9, CLEC16A/TT9_C |
| GATA3 | Transcription factor | no | | Znf_GATA, Znf_NHR/GATA, TF_GATA-2/3 |
| HLA-DPB1 | Antibody/Immunoglobulin | yes | | MHC_II_b_N, Ig/MHC_CS, Ig_C1-set |
| HLA-DQB1 | Antibody/Immunoglobulin | yes | | MHC_II_b_N, Ig/MHC_CS, Ig_C1-set |
| HLA-DRA | Antibody/Immunoglobulin | yes | | MHC_II_a_N, Ig/MHC_CS, Ig_C1-set |
| HLA-DRB1 | Antibody/Immunoglobulin | yes | | MHC_II_b_N, Ig/MHC_CS, Ig_C1-set |
| LPP | Transcription factor | no | | Znf_LIM |
| PTPRK | Phosphatase | yes | 3.1.3.48 | PTP_cat, Tyr_Pase_dom, MAM_dom |
Expression context
Cohort genes with no expression data: 0.
10 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 10 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|
| vermiform appendix | 3 |
| right hemisphere of cerebellum | 2 |
| granulocyte | 2 |
| right lung | 2 |
| cerebellar hemisphere | 1 |
| sural nerve | 1 |
| calcaneal tendon | 1 |
| pituitary gland | 1 |
| left testis | 1 |
| right testis | 1 |
| testis | 1 |
| endometrium epithelium | 1 |
| skin of hip | 1 |
| upper leg skin | 1 |
| lymph node | 1 |
| spleen | 1 |
| upper lobe of left lung | 1 |
| leukocyte | 1 |
| monocyte | 1 |
| saphenous vein | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|
| UPF3A | 191 | ubiquitous | marker | right hemisphere of cerebellum, cerebellar hemisphere, sural nerve |
| AHI1 | 276 | ubiquitous | marker | pituitary gland, calcaneal tendon, right hemisphere of cerebellum |
| CLEC16A | 225 | ubiquitous | marker | left testis, right testis, testis |
| GATA3 | 220 | broad | marker | upper leg skin, skin of hip, endometrium epithelium |
| HLA-DPB1 | 135 | ubiquitous | marker | granulocyte, lymph node, vermiform appendix |
| HLA-DQB1 | 268 | broad | marker | right lung, spleen, upper lobe of left lung |
| HLA-DRA | 132 | broad | marker | monocyte, leukocyte, vermiform appendix |
| HLA-DRB1 | 131 | tissue_specific | marker | vermiform appendix, granulocyte, right lung |
| LPP | 292 | ubiquitous | marker | saphenous vein, urethra, vena cava |
| PTPRK | 135 | ubiquitous | marker | corpus callosum, colonic epithelium, gall bladder |
Protein interactions among cohort
Intra-cohort edges: 2.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|
| GATA3 | 5,990 |
| HLA-DRB1 | 3,448 |
| HLA-DRA | 3,244 |
| PTPRK | 2,161 |
| CLEC16A | 2,028 |
| AHI1 | 1,681 |
| LPP | 1,113 |
| UPF3A | 1,012 |
| HLA-DPB1 | 160 |
| HLA-DQB1 | 128 |
Intra-cohort edges
| A | B | Sources |
|---|
| CLEC16A | HLA-DRB1 | string_interaction |
| HLA-DRA | HLA-DRB1 | biogrid_interaction, intact, string_interaction |
Structural data
PDB: 8 · AlphaFold-only: 2 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|
| HLA-DRA | P01903 | 140 |
| HLA-DRB1 | P01911 | 108 |
| HLA-DPB1 | P04440 | 10 |
| HLA-DQB1 | P01920 | 10 |
| GATA3 | P23771 | 3 |
| UPF3A | Q9H1J1 | 2 |
| PTPRK | Q15262 | 2 |
| AHI1 | Q8N157 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|
| CLEC16A | Q2KHT3 | 72.17 |
| LPP | Q93052 | 60.99 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 21. Enrichment computed across 10 evidence-associated genes (8 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 8 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|
| Translocation of ZAP-70 to Immunological synapse | 3 | 237.9× | 2e-06 | HLA-DPB1, HLA-DRA, HLA-DRB1 |
| Phosphorylation of CD3 and TCR zeta chains | 3 | 203.9× | 2e-06 | HLA-DPB1, HLA-DRA, HLA-DRB1 |
| Co-inhibition by PD-1 | 3 | 194.7× | 2e-06 | HLA-DPB1, HLA-DRA, HLA-DRB1 |
| Interferon gamma signaling | 4 | 62.8× | 2e-06 | HLA-DPB1, HLA-DQB1, HLA-DRA, HLA-DRB1 |
| Generation of second messenger molecules | 3 | 129.8× | 5e-06 | HLA-DPB1, HLA-DRA, HLA-DRB1 |
| Downstream TCR signaling | 3 | 48.1× | 9e-05 | HLA-DPB1, HLA-DRA, HLA-DRB1 |
| MHC class II antigen presentation | 3 | 33.5× | 2e-04 | HLA-DPB1, HLA-DRA, HLA-DRB1 |
| Developmental Lineage of Mammary Stem Cells | 1 | 95.2× | 0.027 | GATA3 |
| Formation of the nephric duct | 1 | 79.3× | 0.029 | GATA3 |
| EGFR downregulation | 1 | 43.3× | 0.048 | PTPRK |
| Differentiation of naive CD4+ T cells to T helper 2 cells (Th2 cells) | 1 | 18.3× | 0.102 | GATA3 |
| Anchoring of the basal body to the plasma membrane | 1 | 14.1× | 0.106 | AHI1 |
| Cilium Assembly | 1 | 13.6× | 0.106 | AHI1 |
| Interleukin-4 and Interleukin-13 signaling | 1 | 12.9× | 0.106 | GATA3 |
| Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) | 1 | 12.2× | 0.106 | UPF3A |
| RUNX1 regulates transcription of genes involved in differentiation of HSCs | 1 | 11.9× | 0.106 | GATA3 |
| Estrogen-dependent gene expression | 1 | 9.4× | 0.121 | GATA3 |
| Regulation of expression of SLITs and ROBOs | 1 | 8.7× | 0.121 | UPF3A |
| Factors involved in megakaryocyte development and platelet production | 1 | 8.3× | 0.121 | GATA3 |
| Organelle biogenesis and maintenance | 1 | 8.2× | 0.121 | AHI1 |
| Ub-specific processing proteases | 1 | 6.6× | 0.141 | GATA3 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 10 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|
| peptide antigen assembly with MHC class II protein complex | 4 | 421.3× | 2e-08 | HLA-DPB1, HLA-DQB1, HLA-DRA, HLA-DRB1 |
| regulation of T-helper cell differentiation | 3 | 1263.9× | 5e-08 | GATA3, HLA-DRA, HLA-DRB1 |
| antigen processing and presentation of exogenous peptide antigen via MHC class II | 4 | 217.4× | 1e-07 | HLA-DPB1, HLA-DQB1, HLA-DRA, HLA-DRB1 |
| positive regulation of immune response | 4 | 192.6× | 1e-07 | HLA-DPB1, HLA-DQB1, HLA-DRA, HLA-DRB1 |
| positive regulation of T cell activation | 4 | 177.4× | 2e-07 | HLA-DPB1, HLA-DQB1, HLA-DRA, HLA-DRB1 |
| antigen processing and presentation of endogenous peptide antigen via MHC class II | 2 | 1685.2× | 9e-06 | HLA-DRA, HLA-DRB1 |
| T cell receptor signaling pathway | 4 | 60.7× | 9e-06 | GATA3, HLA-DPB1, HLA-DQB1, HLA-DRB1 |
| myeloid dendritic cell antigen processing and presentation | 2 | 1123.5× | 2e-05 | HLA-DRA, HLA-DRB1 |
| positive regulation of CD4-positive, alpha-beta T cell activation | 2 | 842.6× | 4e-05 | HLA-DRA, HLA-DRB1 |
| positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation | 2 | 674.1× | 5e-05 | HLA-DRA, HLA-DRB1 |
| humoral immune response | 3 | 84.3× | 8e-05 | GATA3, HLA-DQB1, HLA-DRB1 |
| positive regulation of memory T cell differentiation | 2 | 374.5× | 2e-04 | HLA-DRA, HLA-DRB1 |
| positive regulation of T cell mediated cytotoxicity | 2 | 102.1× | 0.002 | HLA-DRA, HLA-DRB1 |
| macrophage differentiation | 2 | 93.6× | 0.002 | GATA3, HLA-DRB1 |
| adaptive immune response | 3 | 25.3× | 0.002 | HLA-DPB1, HLA-DQB1, HLA-DRA |
| negative regulation of type II interferon production | 2 | 76.6× | 0.003 | GATA3, HLA-DRB1 |
| type IV hypersensitivity | 1 | 1685.2× | 0.004 | GATA3 |
| antigen processing and presentation of peptide or polysaccharide antigen via MHC class II | 1 | 1685.2× | 0.004 | HLA-DRA |
| regulation of interleukin-4 production | 1 | 1685.2× | 0.004 | HLA-DRB1 |
| obsolete negative regulation of cell proliferation involved in mesonephros development | 1 | 1685.2× | 0.004 | GATA3 |
| regulation of cellular response to X-ray | 1 | 1685.2× | 0.004 | GATA3 |
| obsolete negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation | 1 | 1685.2× | 0.004 | GATA3 |
| obsolete negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation | 1 | 1685.2× | 0.004 | GATA3 |
| negative regulation of cell cycle | 2 | 58.1× | 0.004 | GATA3, PTPRK |
| immune response | 3 | 14.1× | 0.007 | HLA-DQB1, HLA-DRA, HLA-DRB1 |
| pro-T cell differentiation | 1 | 842.6× | 0.007 | GATA3 |
| regulation of interleukin-10 production | 1 | 842.6× | 0.007 | HLA-DRB1 |
| parathyroid hormone secretion | 1 | 842.6× | 0.007 | GATA3 |
| regulation of nephron tubule epithelial cell differentiation | 1 | 842.6× | 0.007 | GATA3 |
| thymic T cell selection | 1 | 561.7× | 0.010 | GATA3 |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 10
Druggability breadth: 1 of 10 evidence-associated genes (10%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|
| UPF3A | 0 | 0 |
| AHI1 | 0 | 0 |
| CLEC16A | 0 | 0 |
| GATA3 | 0 | 0 |
| HLA-DPB1 | 0 | 0 |
| HLA-DQB1 | 0 | 0 |
| HLA-DRA | 0 | 0 |
| HLA-DRB1 | 0 | 0 |
| LPP | 0 | 0 |
| PTPRK | 0 | 0 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 1.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|
| HLA-DRB1 | 17 | Binding:17 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|
| PTPRK | 3.1.3.48 | protein-tyrosine-phosphatase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 10; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Drug repurposing candidates
0 approved/phased drugs hit cohort targets but don’t yet appear in disease-level clinical trials. Target-inhibition rationale is strongest for cancer driver genes; a bioactivity hit is a screening signal, not a treatment claim.
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 5 | HLA-DPB1, HLA-DQB1, HLA-DRA, HLA-DRB1, PTPRK |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 5 | UPF3A, AHI1, CLEC16A, GATA3, LPP |
Undrugged target profiles
10 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|
| UPF3A | 0 | — |
| AHI1 | 0 | — |
| CLEC16A | 0 | — |
| GATA3 | 0 | — |
| HLA-DPB1 | 0 | — |
| HLA-DQB1 | 0 | — |
| HLA-DRA | 0 | — |
| HLA-DRB1 | 17 | — |
| LPP | 0 | — |
| PTPRK | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 2.
Phase distribution (across all retrieved trials)
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|
| NCT03077828 | PHASE2 | UNKNOWN | Pembrolizumab and Combination Chemotherapy in Treating Patients With Relapsed or Refractory Hodgkin Lymphoma |
| NCT03226249 | PHASE2 | UNKNOWN | PET-Directed Therapy With Pembrolizumab and Combination Chemotherapy in Treating Patients With Previously Untreated Classical Hodgkin Lymphoma |
Drugs tested across these trials (top 30)
- Cohort genes: GATA3, HLA-DRA, PTPRK, UPF3A, AHI1, CLEC16A, HLA-DPB1, HLA-DQB1, HLA-DRB1, LPP
- Drugs: FLUDEOXYGLUCOSE F 18, Ifosfamide, Vinblastine