Non-immune hydrops fetalis

disease
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Also known as Haemoglobin H hydrops fetalis syndromehydrops fetalis, nonimmuneNIHFnon-immune fetal edemanon-immune fetal hydropsnon-immune foetal hydropsnon-immune foetal oedemanon-immune HF

Summary

Non-immune hydrops fetalis (MONDO:0009369) is a disease caused by variants in THSD1 and EHBP1L1, with 43 cohort genes and 2 clinical trials.

At a glance

  • Prevalence: Unknown (Worldwide) [Orphanet-validated]
  • Causal genes: THSD1 (GenCC Definitive), EHBP1L1 (GenCC Strong)
  • Cohort genes: 43
  • ClinVar variants: 63
  • Clinical trials: 2

Clinical features

Epidemiology

Prevalence records

2 prevalence record(s), Orphanet:

TypeClassValueGeographyValidation
Point prevalence>1 / 1000300ThailandValidated
Prevalence at birth1-5 / 10 00042WorldwideNot yet validated

Identifiers

Disease identifiers

FieldValue
Canonical namenon-immune hydrops fetalis
Mondo IDMONDO:0009369
OMIM236750
Orphanet363999
ICD-111182287637
NCITC111905
SNOMED CT276509008
UMLSC0455988
MedGen105327
GARD0017580
Is cancer (heuristic)no

Also known as: Haemoglobin H hydrops fetalis syndrome · hydrops fetalis, nonimmune · NIHF · non-immune fetal edema · non-immune fetal hydrops · non-immune foetal hydrops · non-immune foetal oedema · non-immune HF

Data availability: 63 ClinVar variants · 2 GenCC gene-disease records.

Disease family

An umbrella term covering 1 Mondo subtype.

Classification path: disease › human disease › disease by developmental or physiological process › disorder of development or morphogenesisdevelopmental defect during embryogenesishydrops fetalisnon-immune hydrops fetalis

Related subtypes (1): immune hydrops fetalis

Subtypes (1): Hb Bart’s hydrops fetalis

Genetics & variants

GWAS landscape

No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.

Variant details and genetic-evidence tiers

ClinVar germline variants

63 retrieved; paginated sample, class counts are floors:

16 pathogenic, 15 uncertain significance, 12 pathogenic/likely pathogenic, 10 likely pathogenic, 9 conflicting classifications of pathogenicity, 1 benign

ClinVarVariant (HGVS)GeneClassificationReview
1065494NM_001100.4(ACTA1):c.226G>C (p.Gly76Arg)ACTA1Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
1065491NM_006015.6(ARID1A):c.175G>T (p.Glu59Ter)ARID1APathogeniccriteria provided, single submitter
1065507NM_014762.4(DHCR24):c.1218+1G>ADHCR24Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
1065498NM_001372.4(DNAH9):c.2984del (p.Arg995fs)DNAH9Pathogeniccriteria provided, multiple submitters, no conflicts
692043NM_182925.5(FLT4):c.3121C>T (p.Arg1041Trp)FLT4Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
7257NM_005251.3(FOXC2):c.914_921del (p.Tyr305fs)FOXC2Pathogeniccriteria provided, multiple submitters, no conflicts
190462NM_024572.4(GALNT14):c.1273C>T (p.Arg425Ter)GALNT14Pathogeniccriteria provided, single submitter
894NM_000181.4(GUSB):c.1144C>T (p.Arg382Cys)GUSBPathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
908NM_000181.4(GUSB):c.1069C>T (p.Arg357Ter)GUSBPathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
439112NM_000517.6(HBA2):c.179G>A (p.Gly60Asp)HBA2Pathogeniccriteria provided, multiple submitters, no conflicts
12604NM_005343.4(HRAS):c.38G>A (p.Gly13Asp)HRASPathogeniccriteria provided, multiple submitters, no conflicts
12612NM_005343.4(HRAS):c.35G>A (p.Gly12Asp)HRASPathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
35554NM_005343.4(HRAS):c.37G>C (p.Gly13Arg)HRASPathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
1065463NM_001142864.4(PIEZO1):c.1792G>A (p.Val598Met)HSALR1Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
1252051NM_153209.4(KIF19):c.788G>A (p.Arg263His)KIF19Pathogenicno assertion criteria provided
373089NM_006767.4(LZTR1):c.1234C>T (p.Arg412Cys)LZTR1Pathogenicreviewed by expert panel
817718NM_001127392.3(MYRF):c.789dup (p.Ser264fs)MYRFPathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
190457NM_001164508.2(NEB):c.21076C>T (p.Arg7026Ter)NEBPathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
218331NM_000434.4(NEU1):c.353-2A>GNEU1Pathogenicno assertion criteria provided
218332NM_000434.4(NEU1):c.1170C>G (p.Tyr390Ter)NEU1Pathogenicno assertion criteria provided
1065474NM_022455.5(NSD1):c.3364dup (p.Ile1122fs)NSD1Pathogeniccriteria provided, single submitter
55806NM_001142864.4(PIEZO1):c.7367G>A (p.Arg2456His)PIEZO1Pathogeniccriteria provided, multiple submitters, no conflicts
13330NM_002834.5(PTPN11):c.182A>G (p.Asp61Gly)PTPN11Pathogeniccriteria provided, multiple submitters, no conflicts
13335NM_002834.5(PTPN11):c.854T>C (p.Phe285Ser)PTPN11Pathogeniccriteria provided, multiple submitters, no conflicts
265307NM_002834.5(PTPN11):c.1520C>A (p.Thr507Lys)PTPN11Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
1065464NM_006912.6(RIT1):c.280G>T (p.Glu94Ter)RIT1Pathogeniccriteria provided, single submitter
181522NM_006912.6(RIT1):c.246T>G (p.Phe82Leu)RIT1Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
181528NM_007373.4(SHOC2):c.519G>A (p.Met173Ile)SHOC2Pathogenicreviewed by expert panel
190452NM_000079.4(CHRNA1):c.687C>T (p.Arg229=)CHRNA1Likely pathogeniccriteria provided, single submitter
190458NM_000308.4(CTSA):c.595del (p.Leu199fs)CTSALikely pathogeniccriteria provided, single submitter

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 9 · Orphanet: 86 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0

GenCC gene–disease validity (cohort genes)

the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.

GeneClassificationInheritanceDiseaseRecords
THSD1DefinitiveAutosomal recessivenon-immune hydrops fetalis8
EHBP1L1StrongAutosomal recessivenon-immune hydrops fetalis

Orphanet rare-disease linkage (cohort genes)

GeneOrphanet IDRare disease
THSD1Orphanet:231160Familial cerebral saccular aneurysm
THSD1Orphanet:363999Non-immune hydrops fetalis
RIT1Orphanet:648Noonan syndrome
ARID1AOrphanet:1465Coffin-Siris syndrome
MYRFOrphanet:647811Cardiac-urogenital syndrome
ACTA1Orphanet:171430Severe congenital nemaline myopathy
ACTA1Orphanet:171433Intermediate nemaline myopathy
ACTA1Orphanet:171436Typical nemaline myopathy
ACTA1Orphanet:171439Childhood-onset nemaline myopathy
ACTA1Orphanet:2020Congenital fiber-type disproportion myopathy
ACTA1Orphanet:447977Progressive scapulohumeroperoneal distal myopathy
ACTA1Orphanet:97240Zebra body myopathy
ACTA1Orphanet:97244Rigid spine syndrome
ACTA1Orphanet:98904Congenital myopathy with excess of thin filaments
NSD1Orphanet:1627Deletion 5q35 syndrome
NSD1Orphanet:2284155q35 microduplication syndrome
NSD1Orphanet:3447Weaver syndrome
NSD1Orphanet:821Sotos syndrome
SHOC2Orphanet:2701Noonan syndrome-like disorder with loose anagen hair
SUZ12Orphanet:213711Endometrial stromal sarcoma
SUZ12Orphanet:3447Weaver syndrome
SUZ12Orphanet:659463Imagawa-Matsumoto syndrome
CHRNA1Orphanet:33108Lethal multiple pterygium syndrome
CHRNA1Orphanet:98913Postsynaptic congenital myasthenic syndrome
VPS13DOrphanet:95434Autosomal recessive cerebellar ataxia-movement disorder syndrome
DHCR24Orphanet:35107Desmosterolosis
PIEZO1Orphanet:3202Dehydrated hereditary stomatocytosis
PIEZO1Orphanet:568062PIEZO1-related generalized lymphatic dysplasia with non-immune hydrops fetalis
ANKS3Orphanet:101063Situs inversus totalis
DNAH9Orphanet:101063Situs inversus totalis
DNAH9Orphanet:157769Situs ambiguus
DNAH9Orphanet:244Primary ciliary dyskinesia
EPHB4Orphanet:1053Vein of Galen malformation
EPHB4Orphanet:568065EPHB4-related lymphatic-related hydrops fetalis
EPHB4Orphanet:693912EPHB4-related capillary malformation-arteriovenous malformation
EPHB4Orphanet:90186Meige disease
FLT4Orphanet:3303Tetralogy of Fallot
FLT4Orphanet:79452Milroy disease
FOXC2Orphanet:33001Lymphedema-distichiasis syndrome
FZD6Orphanet:280654Autosomal recessive nail dysplasia
GUSBOrphanet:584Mucopolysaccharidosis type 7
HBA2Orphanet:163596Hemoglobin Bart’s fetalis syndrome
HBA2Orphanet:247511Autosomal dominant secondary polycythemia
HBA2Orphanet:330041Hemoglobin M disease
HBA2Orphanet:707789Unstable alpha globin chain variant disease
HBA2Orphanet:715143Heterozygous beta-thalassemia intermedia with supernumerary alpha-globin gene
HBA2Orphanet:715154Low oxygen affinity alpha chain hemoglobin disease
HBA2Orphanet:93616Hemoglobin H disease
HBA2Orphanet:98791Alpha-thalassemia-intellectual disability syndrome linked to chromosome 16
HRASOrphanet:146Differentiated thyroid carcinoma

Cohort genes → proteins

43 cohort genes, 42 distinct canonical proteins.

Evidence partition

SubsetGenes
multi_evidence43

Cohort genes (full)

SymbolHGNCEnsemblUniProtNameEvidence
THSD1HGNC:17754ENSG00000136114Q9NS62Thrombospondin type-1 domain-containing protein 1gencc,clinvar
EHBP1L1HGNC:30682ENSG00000173442Q8N3D4EH domain-binding protein 1-like protein 1gencc,clinvar
RIT1HGNC:10023ENSG00000143622Q92963GTP-binding protein Rit1clinvar
ROCK2HGNC:10252ENSG00000134318O75116Rho-associated protein kinase 2clinvar
ARID1AHGNC:11110ENSG00000117713O14497AT-rich interactive domain-containing protein 1Aclinvar
MYRFHGNC:1181ENSG00000124920Q9Y2G1Myelin regulatory factorclinvar
UBN1HGNC:12506ENSG00000118900Q9NPG3Ubinuclein-1clinvar
ACTA1HGNC:129ENSG00000143632P68133Actin, alpha skeletal muscleclinvar
NSD1HGNC:14234ENSG00000165671Q96L73Histone-lysine N-methyltransferase, H3 lysine-36 specificclinvar
SHOC2HGNC:15454ENSG00000108061Q9UQ13Leucine-rich repeat protein SHOC-2clinvar
MOCS3HGNC:15765ENSG00000124217O95396Adenylyltransferase and sulfurtransferase MOCS3clinvar
SUZ12HGNC:17101ENSG00000178691Q15022Polycomb protein SUZ12clinvar
PRPF19HGNC:17896ENSG00000110107Q9UMS4Pre-mRNA-processing factor 19clinvar
FCRL4HGNC:18507ENSG00000163518Q96PJ5Fc receptor-like protein 4clinvar
SERPINA11HGNC:19193ENSG00000186910Q86U17Serpin A11clinvar
CHRNA1HGNC:1955ENSG00000138435P02708Acetylcholine receptor subunit alphaclinvar
GALNT14HGNC:22946ENSG00000158089Q96FL9Polypeptide N-acetylgalactosaminyltransferase 14clinvar
VPS13DHGNC:23595ENSG00000048707Q5THJ4Intermembrane lipid transfer protein VPS13Dclinvar
KIF19HGNC:26735ENSG00000196169Q2TAC6Kinesin-like protein KIF19clinvar
SVOPLHGNC:27034ENSG00000157703Q8N434Putative transporter SVOPLclinvar
DHCR24HGNC:2859ENSG00000116133Q15392Delta(24)-sterol reductaseclinvar
PIEZO1HGNC:28993ENSG00000103335Q92508Piezo-type mechanosensitive ion channel component 1clinvar
ANKS3HGNC:29422ENSG00000168096Q6ZW76Ankyrin repeat and SAM domain-containing protein 3clinvar
DNAH14HGNC:2945ENSG00000185842Q0VDD8Dynein axonemal heavy chain 14clinvar
DNAH9HGNC:2953ENSG00000007174Q9NYC9Dynein axonemal heavy chain 9clinvar
C1orf105HGNC:29591ENSG00000180999O95561Uncharacterized protein C1orf105clinvar
MYBPHLHGNC:30434ENSG00000221986A2RUH7Myosin-binding protein H-likeclinvar
EPHB4HGNC:3395ENSG00000196411P54760Ephrin type-B receptor 4clinvar
FEN1HGNC:3650ENSG00000168496P39748Flap endonuclease 1clinvar
FLT4HGNC:3767ENSG00000037280P35916Vascular endothelial growth factor receptor 3clinvar
FOXC2HGNC:3801ENSG00000176692Q99958Forkhead box protein C2clinvar
FZD6HGNC:4044ENSG00000164930O60353Frizzled-6clinvar
GUSBHGNC:4696ENSG00000169919P08236Beta-glucuronidaseclinvar
HBA2HGNC:4824ENSG00000188536P69905Hemoglobin subunit alphaclinvar
HRASHGNC:5173ENSG00000174775P01112GTPase HRasclinvar
HSALR1HGNC:56095ENSG00000224888HSP90AB1 associated lncRNA 1clinvar
KRASHGNC:6407ENSG00000133703P01116GTPase KRasclinvar
LZTR1HGNC:6742ENSG00000099949Q8N653Leucine-zipper-like transcriptional regulator 1clinvar
MYOM1HGNC:7613ENSG00000101605P52179Myomesin-1clinvar
NEBHGNC:7720ENSG00000183091P20929Nebulinclinvar
NEU1HGNC:7758ENSG00000204386Q99519Sialidase-1clinvar
CTSAHGNC:9251ENSG00000064601P10619Lysosomal protective proteinclinvar
PTPN11HGNC:9644ENSG00000179295Q06124Tyrosine-protein phosphatase non-receptor type 11clinvar

Cohort function summary

Lead sentence per gene, UniProt-curated.

SymbolProtein nameFunction (lead sentence)
THSD1Thrombospondin type-1 domain-containing protein 1Is a positive regulator of nascent focal adhesion assembly, involved in the modulation of endothelial cell attachment to the extracellular matrix.
EHBP1L1EH domain-binding protein 1-like protein 1May act as Rab effector protein and play a role in vesicle trafficking.
RIT1GTP-binding protein Rit1Plays a crucial role in coupling NGF stimulation to the activation of both EPHB2 and MAPK14 signaling pathways and in NGF-dependent neuronal differentiation.
ROCK2Rho-associated protein kinase 2Protein kinase which is a key regulator of actin cytoskeleton and cell polarity.
ARID1AAT-rich interactive domain-containing protein 1AInvolved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).
MYRFMyelin regulatory factorConstitutes a precursor of the transcription factor.
UBN1Ubinuclein-1Acts as a novel regulator of senescence.
ACTA1Actin, alpha skeletal muscleActins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
NSD1Histone-lysine N-methyltransferase, H3 lysine-36 specificHistone methyltransferase that dimethylates Lys-36 of histone H3 (H3K36me2).
SHOC2Leucine-rich repeat protein SHOC-2Core component of the SHOC2-MRAS-PP1c (SMP) holophosphatase complex that regulates activation of the MAPK pathway.
MOCS3Adenylyltransferase and sulfurtransferase MOCS3Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln).
SUZ12Polycomb protein SUZ12Polycomb group (PcG) protein.
PRPF19Pre-mRNA-processing factor 19Ubiquitin-protein ligase which is a core component of several complexes mainly involved pre-mRNA splicing and DNA repair.
FCRL4Fc receptor-like protein 4May function as an inhibitor of the B-cell receptor signaling.
CHRNA1Acetylcholine receptor subunit alphaUpon acetylcholine binding, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
GALNT14Polypeptide N-acetylgalactosaminyltransferase 14Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor.
VPS13DIntermembrane lipid transfer protein VPS13DMediates the transfer of lipids between membranes at organelle contact sites.
KIF19Kinesin-like protein KIF19Plus end-directed microtubule-dependent motor protein that regulates the length of motile cilia by mediating depolymerization of microtubules at ciliary tips.
DHCR24Delta(24)-sterol reductaseCatalyzes the reduction of the delta-24 double bond of sterol intermediates during cholesterol biosynthesis.
PIEZO1Piezo-type mechanosensitive ion channel component 1Pore-forming subunit of the mechanosensitive non-specific cation Piezo channel required for rapidly adapting mechanically activated (MA) currents and has a key role in sensing touch and tactile pain.
ANKS3Ankyrin repeat and SAM domain-containing protein 3May be involved in vasopressin signaling in the kidney.
DNAH14Dynein axonemal heavy chain 14Force generating protein of respiratory cilia.
DNAH9Dynein axonemal heavy chain 9Force generating protein required for cilia beating in respiratory epithelia.
MYBPHLMyosin-binding protein H-likeMyosin-binding protein which plays a role in cardiac function.
EPHB4Ephrin type-B receptor 4Receptor tyrosine kinase which binds promiscuously transmembrane ephrin-B family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells.
FEN1Flap endonuclease 1Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair.
FLT4Vascular endothelial growth factor receptor 3Tyrosine-protein kinase that acts as a cell-surface receptor for VEGFC and VEGFD, and plays an essential role in adult lymphangiogenesis and in the development of the vascular network and the cardiovascular system during embryonic developm…
FOXC2Forkhead box protein C2Transcriptional activator.
FZD6Frizzled-6Receptor for Wnt proteins.
GUSBBeta-glucuronidasePlays an important role in the degradation of dermatan and keratan sulfates.
HBA2Hemoglobin subunit alphaInvolved in oxygen transport from the lung to the various peripheral tissues.
HRASGTPase HRasInvolved in the activation of Ras protein signal transduction.
KRASGTPase KRasRas proteins bind GDP/GTP and possess intrinsic GTPase activity.
LZTR1Leucine-zipper-like transcriptional regulator 1Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex that mediates ubiquitination of Ras (K-Ras/KRAS, N-Ras/NRAS and H-Ras/HRAS).
MYOM1Myomesin-1Major component of the vertebrate myofibrillar M band.
NEBNebulinThis giant muscle protein may be involved in maintaining the structural integrity of sarcomeres and the membrane system associated with the myofibrils.
NEU1Sialidase-1Catalyzes the removal of sialic acid (N-acetylneuraminic acid) moieties from glycoproteins and glycolipids.
CTSALysosomal protective proteinProtective protein appears to be essential for both the activity of beta-galactosidase and neuraminidase, it associates with these enzymes and exerts a protective function necessary for their stability and activity.
PTPN11Tyrosine-protein phosphatase non-receptor type 11Acts downstream of various receptor and cytoplasmic protein tyrosine kinases to participate in the signal transduction from the cell surface to the nucleus.

Protein-family classification

Druggable: 18 · Difficult: 7 · Unknown: 18 · Druggable fraction: 0.42

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

FamilyGenesFoldFDR
Antibody/Immunoglobulin42.7×0.316
Enzyme (other)71.9×0.316
Kinase31.9×0.673
Phosphatase11.9×0.854
Transporter11.8×0.854
Transcription factor51.0×0.899
Protease10.8×0.899
Scaffold/PPI20.8×0.899
GPCR10.6×0.934
Other/Unknown180.8×0.977

Per-gene assignment

SymbolFamilyDruggable?ECInterPro (top 3)
THSD1Other/UnknownnoTSP1_rpt, TSP1_rpt_sf, THSD1
EHBP1L1Other/UnknownnoCH_dom, NT-C2, bMERB_dom
RIT1Other/UnknownnoSmall_GTPase, Small_GTP-bd, Small_GTPase_Ras-type
ROCK2KinaseyesProt_kinase_dom, AGC-kinase_C, PH_domain
ARID1AOther/UnknownnoARID_dom, ARM-like, ARM-type_fold
MYRFTranscription factornop53-like_TF_DNA-bd_sf, NDT80_DNA-bd_dom, MYRF_C2
UBN1Other/UnknownnoHRD, UBN_middle_dom
ACTA1Other/UnknownnoActin, Actin_CS, Actin/actin-like_CS
NSD1Transcription factorno2.1.1.357PWWP_dom, SET_dom, Znf_PHD
SHOC2Other/UnknownnoLeu-rich_rpt, Leu-rich_rpt_typical-subtyp, LRR_dom_sf
MOCS3Enzyme (other)yes2.7.7.80ThiF_NAD_FAD-bd, Rhodanese-like_dom, MOCS3/Uba4
SUZ12Transcription factornoPolycomb_protein_VEFS-Box, Znf_SUZ12
PRPF19Transcription factornoWD40_rpt, Ubox_domain, Znf_RING/FYVE/PHD
FCRL4Antibody/ImmunoglobulinyesIg_sub2, Ig_sub, Ig-like_dom
SERPINA11Other/UnknownnoSerpin_fam, Serpin_dom, Serpin_sf
CHRNA1Other/UnknownnoNicotinic_acetylcholine_rcpt, Neurotrans-gated_channel_TM, Neur_channel
GALNT14Enzyme (other)yes2.4.1.41Ricin_B_lectin, Glyco_trans_2-like, Nucleotide-diphossugar_trans
VPS13DOther/UnknownnoUBA-like_sf, VPS13_VAB, UBA
KIF19Other/UnknownnoKinesin_motor_dom, Kinesin_motor_CS, P-loop_NTPase
SVOPLTransporteryesMFS_sugar_transport-like, MFS, MFS_dom
DHCR24Enzyme (other)yes1.3.1.72Oxid_FAD_bind_N, FAD-bd_PCMH, FAD-bd_PCMH_sub2
PIEZO1Other/UnknownnoPiezo, Piezo_cap_dom, Piezo_TM25-28
ANKS3Scaffold/PPInoSAM, Ankyrin_rpt, SAM/pointed_sf
DNAH14Other/UnknownnoDhc_D4, Dynein_HC_stalk, DHC
DNAH9Other/UnknownnoAAA+_ATPase, Dhc_D6_P-loop, Dynein_heavy_tail
C1orf105Other/UnknownnoDUF4548
MYBPHLAntibody/ImmunoglobulinyesIg_sub2, Ig_sub, FN3_dom
EPHB4Kinaseyes2.7.10.1Prot_kinase_dom, EPH_LBD, Ser-Thr/Tyr_kinase_cat_dom
FEN1Enzyme (other)yes3.1.99.B1XPG/Rad2, XPG_DNA_repair_N, XPG-I_dom
FLT4Kinaseyes2.7.10.1Prot_kinase_dom, Ser-Thr/Tyr_kinase_cat_dom, Tyr_kinase_rcpt_3_CS
FOXC2Transcription factornoFork_head_dom, TF_fork_head_CS_1, TF_fork_head_CS_2
FZD6GPCRyesFrizzled/Smoothened_7TM, Frizzled/SFRP, GPCR_2-like_7TM
GUSBAntibody/Immunoglobulinyes3.2.1.31Glyco_hydro_2, Ig-like_GH2, Glyco_hydro_2_cat
HBA2Other/UnknownnoGlobin, Hemoglobin_a-typ, Hemoglobin_pi
HRASEnzyme (other)yes3.6.5.2Small_GTPase, Small_GTP-bd, Small_GTPase_Ras-type
HSALR1Other/Unknownno
KRASEnzyme (other)yes3.6.5.2Small_GTPase, Small_GTP-bd, Small_GTPase_Ras-type
LZTR1Other/UnknownnoBTB/POZ_dom, Kelch_1, SKP1/BTB/POZ_sf
MYOM1Antibody/ImmunoglobulinyesIg_sub2, Ig_sub, FN3_dom
NEBScaffold/PPInoNebulin_repeat, SH3_domain, Nebulin-like
NEU1Enzyme (other)yes3.2.1.18Sialidase, Sialidase_fam, Sialidase_sf
CTSAProteaseyes3.4.16.5Peptidase_S10, Ser_caboxypep_ser_AS, AB_hydrolase_fold
PTPN11Phosphataseyes3.1.3.48PTP_cat, Tyr_Pase_dom, SH2

Expression context

Cohort genes with no expression data: 0.

37 cohort genes are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

BucketGenes
narrow (1-5 tissues)0
moderate (6-20)0
broad (>20)43
unknown0

Top tissues across cohort

TissueCohort genes
sural nerve6
gluteal muscle4
calcaneal tendon3
colonic epithelium3
lower esophagus mucosa3
male germ line stem cell (sensu Vertebrata) in testis3
right adrenal gland3
right adrenal gland cortex3
ventricular zone2
monocyte2
bone marrow cell2
secondary oocyte2
tendon of biceps brachii2
male germ cell2
sperm2
buccal mucosa cell2
skin of abdomen2
skin of leg2
right uterine tube2
oocyte2

Per-gene tissue summary (top 30)

SymbolBgee breadthFANTOM5 breadthSCXATop tissues
THSD1138broadmarkerventricular zone, right lung, apex of heart
EHBP1L1233ubiquitousmarkergranulocyte, lower esophagus, lower esophagus muscularis layer
RIT1268ubiquitousmarkermonocyte, mononuclear cell, leukocyte
ROCK2290ubiquitousmarkercalcaneal tendon, colonic epithelium, middle temporal gyrus
ARID1A286ubiquitousmarkerbone marrow cell, ventricular zone, embryo
MYRF223ubiquitousmarkermiddle frontal gyrus, C1 segment of cervical spinal cord, inferior vagus X ganglion
UBN1296ubiquitousmarkerlower esophagus mucosa, tendon of biceps brachii, secondary oocyte
ACTA1203broadmarkergluteal muscle, skeletal muscle tissue of biceps brachii, diaphragm
NSD1235ubiquitousmarkersural nerve, colonic epithelium, calcaneal tendon
SHOC2299ubiquitousmarkercalcaneal tendon, sural nerve, bone marrow
MOCS3188ubiquitousyessperm, male germ cell, male germ line stem cell (sensu Vertebrata) in testis
SUZ12288ubiquitousmarkertrabecular bone tissue, mucosa of paranasal sinus, buccal mucosa cell
PRPF19286ubiquitousmarkerpons, right frontal lobe, Brodmann (1909) area 9
FCRL449tissue_specificmarkerbuccal mucosa cell, epithelium of nasopharynx, male germ line stem cell (sensu Vertebrata) in testis
SERPINA1150tissue_specificyesright lobe of liver, liver, minor salivary gland
CHRNA1149broadmarkergastrocnemius, gluteal muscle, muscle of leg
GALNT14194broadmarkerlower esophagus mucosa, adult mammalian kidney, nephron tubule
VPS13D299ubiquitousmarkerskin of leg, skin of abdomen, sural nerve
KIF19159broadmarkerright uterine tube, sural nerve, tibial nerve
SVOPL135tissue_specificmarkersecondary oocyte, oocyte, olfactory segment of nasal mucosa
DHCR24281ubiquitousmarkeradrenal tissue, right adrenal gland cortex, right adrenal gland
PIEZO1142ubiquitousmarkermuscle layer of sigmoid colon, lower esophagus mucosa, upper lobe of left lung
ANKS3195ubiquitousyescerebellar hemisphere, right hemisphere of cerebellum, cerebellar cortex
DNAH14172ubiquitousmarkerleft testis, right testis, adrenal tissue
DNAH9184broadmarkerright uterine tube, bronchial epithelial cell, epithelium of bronchus
C1orf105139tissue_specificmarkersperm, male germ cell, left testis
MYBPHL123tissue_specificyesright atrium auricular region, male germ line stem cell (sensu Vertebrata) in testis, Ammon’s horn
EPHB4282ubiquitousmarkerolfactory bulb, type B pancreatic cell, body of uterus
FEN1281ubiquitousmarkerendometrium epithelium, oocyte, cervix squamous epithelium
FLT4172broadmarkerright lobe of thyroid gland, left lobe of thyroid gland, thyroid gland

Protein interactions among cohort

Intra-cohort edges: 17.

Hub genes (top 10 by interactor count)

SymbolInteractor count
KRAS14,509
HRAS8,064
PTPN116,009
FEN14,897
PRPF194,658
SUZ124,349
ROCK24,121
GUSB3,659
ARID1A3,476
RIT13,298

Intra-cohort edges

ABSources
CTSANEU1string_interaction
DHCR24HRASbiogrid_interaction
DNAH9THSD1string_interaction
FCRL4PTPN11string_interaction
FEN1MYRFstring_interaction
FLT4FOXC2string_interaction
HRASLZTR1biogrid_interaction
HRASSHOC2intact, string_interaction
KRASLZTR1string_interaction
KRASSHOC2intact, string_interaction
LZTR1RIT1biogrid_interaction, intact, string_interaction
LZTR1SHOC2string_interaction
MYBPHLPRPF19string_interaction
MYOM1NEBstring_interaction
PRPF19PTPN11string_interaction
PTPN11SHOC2string_interaction
RIT1SHOC2string_interaction

Structural data

PDB: 29 · AlphaFold-only: 13 · No structure: 1

Cohort genes with PDB structures (top 30)

SymbolUniProtPDB entries
KRASP01116511
HBA2P69905356
HRASP01112246
PTPN11Q06124115
SUZ12Q1502230
FEN1P3974828
PRPF19Q9UMS423
EPHB4P5476023
ROCK2O7511621
CHRNA1P0270815
SHOC2Q9UQ1313
CTSAP1061912
MYOM1P521799
ARID1AO144977
PIEZO1Q925086
FOXC2Q999586
ACTA1P681335
NSD1Q96L734
RIT1Q929633
LZTR1Q8N6533
NEBP209293
MYRFQ9Y2G12
ANKS3Q6ZW762
FLT4P359162
FZD6O603532
GUSBP082362
UBN1Q9NPG31
MOCS3O953961
DNAH9Q9NYC91

AlphaFold-only cohort genes (top 30 by pLDDT)

SymbolUniProtpLDDT
DHCR24Q1539292.40
GALNT14Q96FL989.23
NEU1Q9951989.12
MYBPHLA2RUH786.64
SVOPLQ8N43484.29
SERPINA11Q86U1783.27
FCRL4Q96PJ578.56
KIF19Q2TAC665.40
THSD1Q9NS6259.46
C1orf105O9556157.57
EHBP1L1Q8N3D449.98
VPS13DQ5THJ4
DNAH14Q0VDD8

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 286. Enrichment computed across 43 evidence-associated genes (29 with Reactome annotation).

Pathways by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 29 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

PathwayCohort genesFoldFDRSample cohort genes
Signaling by RAS GAP mutants2262.5×9e-04HRAS, KRAS
Signaling by RAS GTPase mutants2262.5×9e-04HRAS, KRAS
Activated NTRK2 signals through FRS2 and FRS3398.5×9e-04HRAS, KRAS, PTPN11
Signaling by FLT3 ITD and TKD mutants378.8×9e-04HRAS, KRAS, PTPN11
Tie2 Signaling362.2×9e-04HRAS, KRAS, PTPN11
FRS-mediated FGFR3 signaling356.3×9e-04HRAS, KRAS, PTPN11
FRS-mediated FGFR4 signaling351.4×0.001HRAS, KRAS, PTPN11
Defective NEU1 causes sialidosis2196.9×0.001NEU1, CTSA
FRS-mediated FGFR1 signaling347.3×0.001HRAS, KRAS, PTPN11
FRS-mediated FGFR2 signaling345.4×0.001HRAS, KRAS, PTPN11
Activation of RAS in B cells2157.5×0.001HRAS, KRAS
Downstream signal transduction339.4×0.001HRAS, KRAS, PTPN11
FLT3 Signaling335.8×0.002HRAS, KRAS, PTPN11
RAF activation334.8×0.002SHOC2, HRAS, KRAS
RAS signaling downstream of NF1 loss-of-function variants2112.5×0.002HRAS, KRAS
Estrogen-stimulated signaling through PRKCZ2112.5×0.002HRAS, KRAS
SOS-mediated signalling298.5×0.003HRAS, KRAS
EPHB-mediated forward signaling327.5×0.003ROCK2, EPHB4, HRAS
Signaling by SCF-KIT325.7×0.003HRAS, KRAS, PTPN11
Activated NTRK3 signals through RAS287.5×0.003HRAS, KRAS
EGFR Transactivation by Gastrin278.8×0.003HRAS, KRAS
SHC-related events triggered by IGF1R278.8×0.003HRAS, KRAS
Activated NTRK2 signals through RAS278.8×0.003HRAS, KRAS
MET activates RAS signaling271.6×0.004HRAS, KRAS
Signaling by FGFR4 in disease265.6×0.004HRAS, KRAS
Constitutive Signaling by Overexpressed ERBB2265.6×0.004HRAS, KRAS
p38MAPK events260.6×0.005HRAS, KRAS
Signaling by PDGFRA transmembrane, juxtamembrane and kinase domain mutants260.6×0.005HRAS, KRAS
Signaling by PDGFRA extracellular domain mutants260.6×0.005HRAS, KRAS
PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases256.3×0.005HRAS, KRAS

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 37 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO termCohort genesFoldFDRSample cohort genes
Ras protein signal transduction422.2×0.012RIT1, DHCR24, HRAS, KRAS
positive regulation of connective tissue growth factor production1455.5×0.059ROCK2
regulation of peptidyl-serine phosphorylation1455.5×0.059NSD1
response to mineralocorticoid1455.5×0.059KRAS
negative regulation of cortisol secretion1455.5×0.059PTPN11
negative regulation of growth hormone secretion1455.5×0.059PTPN11
axonemal microtubule depolymerization1455.5×0.059KIF19
plus-end specific microtubule depolymerization1455.5×0.059KIF19
cellular response to growth hormone stimulus1455.5×0.059SHOC2
regulation of RNA polymerase II regulatory region sequence-specific DNA binding1455.5×0.059NSD1
lymphangiogenesis265.1×0.059FLT4, FOXC2
regulation of long-term neuronal synaptic plasticity253.6×0.059HRAS, KRAS
cilium movement involved in cell motility236.4×0.059DNAH14, DNAH9
blood vessel diameter maintenance233.7×0.059ROCK2, FOXC2
cardiac muscle cell proliferation231.4×0.059FOXC2, KRAS
apoptotic process involved in outflow tract morphogenesis1227.7×0.064FOXC2
growth plate cartilage morphogenesis1227.7×0.064GUSB
microvillus organization1227.7×0.064PTPN11
paraxial mesodermal cell fate commitment1227.7×0.064FOXC2
intestinal epithelial cell migration1227.7×0.064PTPN11
regulation of angiotensin-activated signaling pathway1227.7×0.064ROCK2
negative regulation of protein localization to lysosome1227.7×0.064ROCK2
negative regulation of apoptotic process involved in outflow tract morphogenesis1227.7×0.064FOXC2
vascular endothelial growth factor receptor signaling pathway226.0×0.064FLT4, FOXC2
homeostasis of number of cells within a tissue224.0×0.064KRAS, PTPN11
response to hormone223.4×0.064DHCR24, FOXC2
oligodendrocyte differentiation222.8×0.064MYRF, SUZ12
DNA damage checkpoint signaling221.2×0.064PRPF19, PTPN11
cerebellar cortex formation1151.8×0.065PTPN11
forebrain astrocyte development1151.8×0.065KRAS

Therapeutics

Drug target analysis

Approved (phase 4): 12 · Phase ≥3: 12 · Phased (≥1): 12 · Undrugged: 31

Druggability breadth: 21 of 43 evidence-associated genes (49%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Genes with an approved drug

The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.

SymbolExample approved molecule
ROCK2MOMELOTINIB
NSD1VENETOCLAX
SUZ12TAZEMETOSTAT
CHRNA1VARENICLINE
DHCR24GILTERITINIB
EPHB4PONATINIB
FLT4FEDRATINIB
GUSBPRASTERONE
HRASLONAFARNIB
KRASVEMURAFENIB
CTSAISOFLUROPHATE
PTPN11ESTRAMUSTINE PHOSPHATE

Top cohort targets by molecule count

SymbolMoleculesMax phase
FLT4724
ROCK2524
EPHB4464
CHRNA1124
KRAS114
PTPN1184
NSD174
HRAS44
SUZ1224
GUSB24

Drugs targeting cohort genes (top 30)

MoleculeMax phaseTargets in cohort
MOMELOTINIB4ROCK2
FEDRATINIB4EPHB4, FLT4, ROCK2
RUXOLITINIB4ROCK2
PALBOCICLIB4ROCK2
BELUMOSUDIL4ROCK2
TOFACITINIB CITRATE4ROCK2
BARICITINIB4ROCK2
TOFACITINIB4ROCK2
CAPIVASERTIB4ROCK2
CERITINIB4ROCK2
VANDETANIB4EPHB4, FLT4, ROCK2
BOSUTINIB4EPHB4, ROCK2
UPADACITINIB4ROCK2
NETARSUDIL4ROCK2
SUNITINIB4EPHB4, FLT4, ROCK2
CRIZOTINIB4EPHB4, ROCK2
MIDOSTAURIN4FLT4, ROCK2
VENETOCLAX4NSD1
PRIMAQUINE4NSD1
CHLOROQUINE PHOSPHATE4NSD1
TAZEMETOSTAT4SUZ12
VARENICLINE4CHRNA1
NICOTINE4CHRNA1
TROPISETRON4CHRNA1
BUPROPION4CHRNA1
MECAMYLAMINE4CHRNA1
GILTERITINIB4DHCR24
PONATINIB4EPHB4
TIVOZANIB4EPHB4, FLT4
SORAFENIB4EPHB4, FLT4

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 13.

Cohort genes with ChEMBL bioactivity (full, sorted by assay count)

SymbolAssaysType breakdown
KRAS861Binding:829, Functional:32
ROCK2788Binding:783, Functional:3, ADMET:1, Toxicity:1
FLT4717Binding:683, Functional:32, ADMET:2
PTPN11588Binding:585, Functional:2, ADMET:1
EPHB4437Binding:437
CHRNA1157Binding:107, Functional:47, ADMET:2, Toxicity:1
NSD190Binding:90
HBA259Binding:46, Functional:13
SUZ1251Binding:51
HRAS48Binding:45, Functional:3
GUSB41Binding:38, ADMET:3
NEU127Binding:27
CTSA19Binding:13, ADMET:6
PIEZO117Binding:17
FEN115Binding:12, Functional:3
DHCR2410Binding:10
PRPF197Binding:7
ARID1A6Binding:6
MOCS32Binding:2
FOXC22Binding:2
GALNT141Binding:1

Cohort enzymes (BRENDA EC)

SymbolEC numbersNames
NSD12.1.1.357, 2.1.1.362[histone H3]-lysine36 N-dimethyltransferase, [histone H4]-N-methyl-L-lysine20 N-methyltransferase
MOCS32.7.7.80, 2.8.1.11molybdopterin-synthase adenylyltransferase, molybdopterin synthase sulfurtransferase
GALNT142.4.1.41polypeptide N-acetylgalactosaminyltransferase
DHCR241.3.1.72DELTA24-sterol reductase
EPHB42.7.10.1receptor protein-tyrosine kinase
FEN13.1.99.B1
FLT42.7.10.1receptor protein-tyrosine kinase
GUSB3.2.1.31beta-glucuronidase
HRAS3.6.5.2small monomeric GTPase
KRAS3.6.5.2small monomeric GTPase
NEU13.2.1.18exo-alpha-sialidase
CTSA3.4.16.5carboxypeptidase C
PTPN113.1.3.48protein-tyrosine-phosphatase

Cohort genes with high screening signal

≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.

SymbolChEMBL assays
ROCK2788
CHRNA1157
EPHB4437
FLT4717
KRAS861
PTPN11588

Pharmacogenomics

Cohort genes with a PharmGKB record: 42; with CPIC/DPWG dosing guidelines: 0.

No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).

Chemical tractability of cohort targets

30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

CompoundMax phaseCohort target (bioactivity)
MOMELOTINIB4ROCK2
FEDRATINIB4EPHB4, FLT4, ROCK2
RUXOLITINIB4ROCK2
PALBOCICLIB4ROCK2
BELUMOSUDIL4ROCK2
TOFACITINIB CITRATE4ROCK2
BARICITINIB4ROCK2
TOFACITINIB4ROCK2
CAPIVASERTIB4ROCK2
CERITINIB4ROCK2
VANDETANIB4EPHB4, FLT4, ROCK2
BOSUTINIB4EPHB4, ROCK2
UPADACITINIB4ROCK2
NETARSUDIL4ROCK2
SUNITINIB4EPHB4, FLT4, ROCK2
CRIZOTINIB4EPHB4, ROCK2
MIDOSTAURIN4FLT4, ROCK2
VENETOCLAX4NSD1
PRIMAQUINE4NSD1
CHLOROQUINE PHOSPHATE4NSD1
TAZEMETOSTAT4SUZ12
VARENICLINE4CHRNA1
NICOTINE4CHRNA1
TROPISETRON4CHRNA1
BUPROPION4CHRNA1
MECAMYLAMINE4CHRNA1
GILTERITINIB4DHCR24
PONATINIB4EPHB4
TIVOZANIB4EPHB4, FLT4
SORAFENIB4EPHB4, FLT4

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

TierDefinitionGenesSymbols
AApproved (phase 4 drug)12ROCK2, NSD1, SUZ12, CHRNA1, DHCR24, EPHB4, FLT4, GUSB, HRAS, KRAS (+2 more)
BPhased (≥1) drug, not yet approved0
CDruggable family + PDB, no drug4MOCS3, FEN1, FZD6, MYOM1
DDruggable family + AlphaFold only, no drug5FCRL4, GALNT14, SVOPL, MYBPHL, NEU1
EDifficult family or no structure, no drug22THSD1, EHBP1L1, RIT1, ARID1A, MYRF, UBN1, ACTA1, SHOC2, PRPF19, SERPINA11 (+12 more)

Undrugged target profiles

31 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

SymbolChEMBL assaysDrugged partners (top 3)
PRPF197PTPN11
FCRL40PTPN11
FOXC22FLT4
NEU127CTSA
THSD10
EHBP1L10
RIT10
ARID1A6
MYRF0
UBN10
ACTA10
SHOC20
MOCS32
SERPINA110
GALNT141
VPS13D0
KIF190
SVOPL0
PIEZO117
ANKS30
DNAH140
DNAH90
C1orf1050
MYBPHL0
FEN115
FZD60
HBA259
HSALR10
LZTR10
MYOM10

Clinical trials & evidence

Clinical trials

Clinical trials: 2.

Phase distribution (across all retrieved trials)

PhaseTrials
Not specified2

Top trials by phase / activity

NCTPhaseStatusTitle
NCT05528796Not specifiedENROLLING_BY_INVITATIONUncovering the Etiologies of Non-immune Hydrops Fetalis
NCT04308603Not specifiedCOMPLETEDMulticentric Prospective Study to Screen Inborn Errors of Metabolism in Non-immune Hydrops (NIH) Fetalis by Massively Parallel Sequencing