Non-immune hydrops fetalis
diseaseOn this page
Also known as Haemoglobin H hydrops fetalis syndromehydrops fetalis, nonimmuneNIHFnon-immune fetal edemanon-immune fetal hydropsnon-immune foetal hydropsnon-immune foetal oedemanon-immune HF
Summary
Non-immune hydrops fetalis (MONDO:0009369) is a disease caused by variants in THSD1 and EHBP1L1, with 43 cohort genes and 2 clinical trials.
At a glance
- Prevalence: Unknown (Worldwide) [Orphanet-validated]
- Causal genes: THSD1 (GenCC Definitive), EHBP1L1 (GenCC Strong)
- Cohort genes: 43
- ClinVar variants: 63
- Clinical trials: 2
Clinical features
Epidemiology
Prevalence records
2 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Point prevalence | >1 / 1000 | 300 | Thailand | Validated |
| Prevalence at birth | 1-5 / 10 000 | 42 | Worldwide | Not yet validated |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | non-immune hydrops fetalis |
| Mondo ID | MONDO:0009369 |
| OMIM | 236750 |
| Orphanet | 363999 |
| ICD-11 | 1182287637 |
| NCIT | C111905 |
| SNOMED CT | 276509008 |
| UMLS | C0455988 |
| MedGen | 105327 |
| GARD | 0017580 |
| Is cancer (heuristic) | no |
Also known as: Haemoglobin H hydrops fetalis syndrome · hydrops fetalis, nonimmune · NIHF · non-immune fetal edema · non-immune fetal hydrops · non-immune foetal hydrops · non-immune foetal oedema · non-immune HF
Data availability: 63 ClinVar variants · 2 GenCC gene-disease records.
Disease family
An umbrella term covering 1 Mondo subtype.
Classification path: disease › human disease › disease by developmental or physiological process › disorder of development or morphogenesis › developmental defect during embryogenesis › hydrops fetalis › non-immune hydrops fetalis
Related subtypes (1): immune hydrops fetalis
Subtypes (1): Hb Bart’s hydrops fetalis
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
63 retrieved; paginated sample, class counts are floors:
16 pathogenic, 15 uncertain significance, 12 pathogenic/likely pathogenic, 10 likely pathogenic, 9 conflicting classifications of pathogenicity, 1 benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1065494 | NM_001100.4(ACTA1):c.226G>C (p.Gly76Arg) | ACTA1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1065491 | NM_006015.6(ARID1A):c.175G>T (p.Glu59Ter) | ARID1A | Pathogenic | criteria provided, single submitter |
| 1065507 | NM_014762.4(DHCR24):c.1218+1G>A | DHCR24 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1065498 | NM_001372.4(DNAH9):c.2984del (p.Arg995fs) | DNAH9 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 692043 | NM_182925.5(FLT4):c.3121C>T (p.Arg1041Trp) | FLT4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 7257 | NM_005251.3(FOXC2):c.914_921del (p.Tyr305fs) | FOXC2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 190462 | NM_024572.4(GALNT14):c.1273C>T (p.Arg425Ter) | GALNT14 | Pathogenic | criteria provided, single submitter |
| 894 | NM_000181.4(GUSB):c.1144C>T (p.Arg382Cys) | GUSB | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 908 | NM_000181.4(GUSB):c.1069C>T (p.Arg357Ter) | GUSB | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 439112 | NM_000517.6(HBA2):c.179G>A (p.Gly60Asp) | HBA2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 12604 | NM_005343.4(HRAS):c.38G>A (p.Gly13Asp) | HRAS | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 12612 | NM_005343.4(HRAS):c.35G>A (p.Gly12Asp) | HRAS | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 35554 | NM_005343.4(HRAS):c.37G>C (p.Gly13Arg) | HRAS | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1065463 | NM_001142864.4(PIEZO1):c.1792G>A (p.Val598Met) | HSALR1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1252051 | NM_153209.4(KIF19):c.788G>A (p.Arg263His) | KIF19 | Pathogenic | no assertion criteria provided |
| 373089 | NM_006767.4(LZTR1):c.1234C>T (p.Arg412Cys) | LZTR1 | Pathogenic | reviewed by expert panel |
| 817718 | NM_001127392.3(MYRF):c.789dup (p.Ser264fs) | MYRF | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 190457 | NM_001164508.2(NEB):c.21076C>T (p.Arg7026Ter) | NEB | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 218331 | NM_000434.4(NEU1):c.353-2A>G | NEU1 | Pathogenic | no assertion criteria provided |
| 218332 | NM_000434.4(NEU1):c.1170C>G (p.Tyr390Ter) | NEU1 | Pathogenic | no assertion criteria provided |
| 1065474 | NM_022455.5(NSD1):c.3364dup (p.Ile1122fs) | NSD1 | Pathogenic | criteria provided, single submitter |
| 55806 | NM_001142864.4(PIEZO1):c.7367G>A (p.Arg2456His) | PIEZO1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 13330 | NM_002834.5(PTPN11):c.182A>G (p.Asp61Gly) | PTPN11 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 13335 | NM_002834.5(PTPN11):c.854T>C (p.Phe285Ser) | PTPN11 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 265307 | NM_002834.5(PTPN11):c.1520C>A (p.Thr507Lys) | PTPN11 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1065464 | NM_006912.6(RIT1):c.280G>T (p.Glu94Ter) | RIT1 | Pathogenic | criteria provided, single submitter |
| 181522 | NM_006912.6(RIT1):c.246T>G (p.Phe82Leu) | RIT1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 181528 | NM_007373.4(SHOC2):c.519G>A (p.Met173Ile) | SHOC2 | Pathogenic | reviewed by expert panel |
| 190452 | NM_000079.4(CHRNA1):c.687C>T (p.Arg229=) | CHRNA1 | Likely pathogenic | criteria provided, single submitter |
| 190458 | NM_000308.4(CTSA):c.595del (p.Leu199fs) | CTSA | Likely pathogenic | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 9 · Orphanet: 86 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| THSD1 | Definitive | Autosomal recessive | non-immune hydrops fetalis | 8 |
| EHBP1L1 | Strong | Autosomal recessive | non-immune hydrops fetalis |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| THSD1 | Orphanet:231160 | Familial cerebral saccular aneurysm |
| THSD1 | Orphanet:363999 | Non-immune hydrops fetalis |
| RIT1 | Orphanet:648 | Noonan syndrome |
| ARID1A | Orphanet:1465 | Coffin-Siris syndrome |
| MYRF | Orphanet:647811 | Cardiac-urogenital syndrome |
| ACTA1 | Orphanet:171430 | Severe congenital nemaline myopathy |
| ACTA1 | Orphanet:171433 | Intermediate nemaline myopathy |
| ACTA1 | Orphanet:171436 | Typical nemaline myopathy |
| ACTA1 | Orphanet:171439 | Childhood-onset nemaline myopathy |
| ACTA1 | Orphanet:2020 | Congenital fiber-type disproportion myopathy |
| ACTA1 | Orphanet:447977 | Progressive scapulohumeroperoneal distal myopathy |
| ACTA1 | Orphanet:97240 | Zebra body myopathy |
| ACTA1 | Orphanet:97244 | Rigid spine syndrome |
| ACTA1 | Orphanet:98904 | Congenital myopathy with excess of thin filaments |
| NSD1 | Orphanet:1627 | Deletion 5q35 syndrome |
| NSD1 | Orphanet:228415 | 5q35 microduplication syndrome |
| NSD1 | Orphanet:3447 | Weaver syndrome |
| NSD1 | Orphanet:821 | Sotos syndrome |
| SHOC2 | Orphanet:2701 | Noonan syndrome-like disorder with loose anagen hair |
| SUZ12 | Orphanet:213711 | Endometrial stromal sarcoma |
| SUZ12 | Orphanet:3447 | Weaver syndrome |
| SUZ12 | Orphanet:659463 | Imagawa-Matsumoto syndrome |
| CHRNA1 | Orphanet:33108 | Lethal multiple pterygium syndrome |
| CHRNA1 | Orphanet:98913 | Postsynaptic congenital myasthenic syndrome |
| VPS13D | Orphanet:95434 | Autosomal recessive cerebellar ataxia-movement disorder syndrome |
| DHCR24 | Orphanet:35107 | Desmosterolosis |
| PIEZO1 | Orphanet:3202 | Dehydrated hereditary stomatocytosis |
| PIEZO1 | Orphanet:568062 | PIEZO1-related generalized lymphatic dysplasia with non-immune hydrops fetalis |
| ANKS3 | Orphanet:101063 | Situs inversus totalis |
| DNAH9 | Orphanet:101063 | Situs inversus totalis |
| DNAH9 | Orphanet:157769 | Situs ambiguus |
| DNAH9 | Orphanet:244 | Primary ciliary dyskinesia |
| EPHB4 | Orphanet:1053 | Vein of Galen malformation |
| EPHB4 | Orphanet:568065 | EPHB4-related lymphatic-related hydrops fetalis |
| EPHB4 | Orphanet:693912 | EPHB4-related capillary malformation-arteriovenous malformation |
| EPHB4 | Orphanet:90186 | Meige disease |
| FLT4 | Orphanet:3303 | Tetralogy of Fallot |
| FLT4 | Orphanet:79452 | Milroy disease |
| FOXC2 | Orphanet:33001 | Lymphedema-distichiasis syndrome |
| FZD6 | Orphanet:280654 | Autosomal recessive nail dysplasia |
| GUSB | Orphanet:584 | Mucopolysaccharidosis type 7 |
| HBA2 | Orphanet:163596 | Hemoglobin Bart’s fetalis syndrome |
| HBA2 | Orphanet:247511 | Autosomal dominant secondary polycythemia |
| HBA2 | Orphanet:330041 | Hemoglobin M disease |
| HBA2 | Orphanet:707789 | Unstable alpha globin chain variant disease |
| HBA2 | Orphanet:715143 | Heterozygous beta-thalassemia intermedia with supernumerary alpha-globin gene |
| HBA2 | Orphanet:715154 | Low oxygen affinity alpha chain hemoglobin disease |
| HBA2 | Orphanet:93616 | Hemoglobin H disease |
| HBA2 | Orphanet:98791 | Alpha-thalassemia-intellectual disability syndrome linked to chromosome 16 |
| HRAS | Orphanet:146 | Differentiated thyroid carcinoma |
Cohort genes → proteins
43 cohort genes, 42 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 43 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| THSD1 | HGNC:17754 | ENSG00000136114 | Q9NS62 | Thrombospondin type-1 domain-containing protein 1 | gencc,clinvar |
| EHBP1L1 | HGNC:30682 | ENSG00000173442 | Q8N3D4 | EH domain-binding protein 1-like protein 1 | gencc,clinvar |
| RIT1 | HGNC:10023 | ENSG00000143622 | Q92963 | GTP-binding protein Rit1 | clinvar |
| ROCK2 | HGNC:10252 | ENSG00000134318 | O75116 | Rho-associated protein kinase 2 | clinvar |
| ARID1A | HGNC:11110 | ENSG00000117713 | O14497 | AT-rich interactive domain-containing protein 1A | clinvar |
| MYRF | HGNC:1181 | ENSG00000124920 | Q9Y2G1 | Myelin regulatory factor | clinvar |
| UBN1 | HGNC:12506 | ENSG00000118900 | Q9NPG3 | Ubinuclein-1 | clinvar |
| ACTA1 | HGNC:129 | ENSG00000143632 | P68133 | Actin, alpha skeletal muscle | clinvar |
| NSD1 | HGNC:14234 | ENSG00000165671 | Q96L73 | Histone-lysine N-methyltransferase, H3 lysine-36 specific | clinvar |
| SHOC2 | HGNC:15454 | ENSG00000108061 | Q9UQ13 | Leucine-rich repeat protein SHOC-2 | clinvar |
| MOCS3 | HGNC:15765 | ENSG00000124217 | O95396 | Adenylyltransferase and sulfurtransferase MOCS3 | clinvar |
| SUZ12 | HGNC:17101 | ENSG00000178691 | Q15022 | Polycomb protein SUZ12 | clinvar |
| PRPF19 | HGNC:17896 | ENSG00000110107 | Q9UMS4 | Pre-mRNA-processing factor 19 | clinvar |
| FCRL4 | HGNC:18507 | ENSG00000163518 | Q96PJ5 | Fc receptor-like protein 4 | clinvar |
| SERPINA11 | HGNC:19193 | ENSG00000186910 | Q86U17 | Serpin A11 | clinvar |
| CHRNA1 | HGNC:1955 | ENSG00000138435 | P02708 | Acetylcholine receptor subunit alpha | clinvar |
| GALNT14 | HGNC:22946 | ENSG00000158089 | Q96FL9 | Polypeptide N-acetylgalactosaminyltransferase 14 | clinvar |
| VPS13D | HGNC:23595 | ENSG00000048707 | Q5THJ4 | Intermembrane lipid transfer protein VPS13D | clinvar |
| KIF19 | HGNC:26735 | ENSG00000196169 | Q2TAC6 | Kinesin-like protein KIF19 | clinvar |
| SVOPL | HGNC:27034 | ENSG00000157703 | Q8N434 | Putative transporter SVOPL | clinvar |
| DHCR24 | HGNC:2859 | ENSG00000116133 | Q15392 | Delta(24)-sterol reductase | clinvar |
| PIEZO1 | HGNC:28993 | ENSG00000103335 | Q92508 | Piezo-type mechanosensitive ion channel component 1 | clinvar |
| ANKS3 | HGNC:29422 | ENSG00000168096 | Q6ZW76 | Ankyrin repeat and SAM domain-containing protein 3 | clinvar |
| DNAH14 | HGNC:2945 | ENSG00000185842 | Q0VDD8 | Dynein axonemal heavy chain 14 | clinvar |
| DNAH9 | HGNC:2953 | ENSG00000007174 | Q9NYC9 | Dynein axonemal heavy chain 9 | clinvar |
| C1orf105 | HGNC:29591 | ENSG00000180999 | O95561 | Uncharacterized protein C1orf105 | clinvar |
| MYBPHL | HGNC:30434 | ENSG00000221986 | A2RUH7 | Myosin-binding protein H-like | clinvar |
| EPHB4 | HGNC:3395 | ENSG00000196411 | P54760 | Ephrin type-B receptor 4 | clinvar |
| FEN1 | HGNC:3650 | ENSG00000168496 | P39748 | Flap endonuclease 1 | clinvar |
| FLT4 | HGNC:3767 | ENSG00000037280 | P35916 | Vascular endothelial growth factor receptor 3 | clinvar |
| FOXC2 | HGNC:3801 | ENSG00000176692 | Q99958 | Forkhead box protein C2 | clinvar |
| FZD6 | HGNC:4044 | ENSG00000164930 | O60353 | Frizzled-6 | clinvar |
| GUSB | HGNC:4696 | ENSG00000169919 | P08236 | Beta-glucuronidase | clinvar |
| HBA2 | HGNC:4824 | ENSG00000188536 | P69905 | Hemoglobin subunit alpha | clinvar |
| HRAS | HGNC:5173 | ENSG00000174775 | P01112 | GTPase HRas | clinvar |
| HSALR1 | HGNC:56095 | ENSG00000224888 | HSP90AB1 associated lncRNA 1 | clinvar | |
| KRAS | HGNC:6407 | ENSG00000133703 | P01116 | GTPase KRas | clinvar |
| LZTR1 | HGNC:6742 | ENSG00000099949 | Q8N653 | Leucine-zipper-like transcriptional regulator 1 | clinvar |
| MYOM1 | HGNC:7613 | ENSG00000101605 | P52179 | Myomesin-1 | clinvar |
| NEB | HGNC:7720 | ENSG00000183091 | P20929 | Nebulin | clinvar |
| NEU1 | HGNC:7758 | ENSG00000204386 | Q99519 | Sialidase-1 | clinvar |
| CTSA | HGNC:9251 | ENSG00000064601 | P10619 | Lysosomal protective protein | clinvar |
| PTPN11 | HGNC:9644 | ENSG00000179295 | Q06124 | Tyrosine-protein phosphatase non-receptor type 11 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| THSD1 | Thrombospondin type-1 domain-containing protein 1 | Is a positive regulator of nascent focal adhesion assembly, involved in the modulation of endothelial cell attachment to the extracellular matrix. |
| EHBP1L1 | EH domain-binding protein 1-like protein 1 | May act as Rab effector protein and play a role in vesicle trafficking. |
| RIT1 | GTP-binding protein Rit1 | Plays a crucial role in coupling NGF stimulation to the activation of both EPHB2 and MAPK14 signaling pathways and in NGF-dependent neuronal differentiation. |
| ROCK2 | Rho-associated protein kinase 2 | Protein kinase which is a key regulator of actin cytoskeleton and cell polarity. |
| ARID1A | AT-rich interactive domain-containing protein 1A | Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). |
| MYRF | Myelin regulatory factor | Constitutes a precursor of the transcription factor. |
| UBN1 | Ubinuclein-1 | Acts as a novel regulator of senescence. |
| ACTA1 | Actin, alpha skeletal muscle | Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. |
| NSD1 | Histone-lysine N-methyltransferase, H3 lysine-36 specific | Histone methyltransferase that dimethylates Lys-36 of histone H3 (H3K36me2). |
| SHOC2 | Leucine-rich repeat protein SHOC-2 | Core component of the SHOC2-MRAS-PP1c (SMP) holophosphatase complex that regulates activation of the MAPK pathway. |
| MOCS3 | Adenylyltransferase and sulfurtransferase MOCS3 | Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). |
| SUZ12 | Polycomb protein SUZ12 | Polycomb group (PcG) protein. |
| PRPF19 | Pre-mRNA-processing factor 19 | Ubiquitin-protein ligase which is a core component of several complexes mainly involved pre-mRNA splicing and DNA repair. |
| FCRL4 | Fc receptor-like protein 4 | May function as an inhibitor of the B-cell receptor signaling. |
| CHRNA1 | Acetylcholine receptor subunit alpha | Upon acetylcholine binding, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. |
| GALNT14 | Polypeptide N-acetylgalactosaminyltransferase 14 | Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. |
| VPS13D | Intermembrane lipid transfer protein VPS13D | Mediates the transfer of lipids between membranes at organelle contact sites. |
| KIF19 | Kinesin-like protein KIF19 | Plus end-directed microtubule-dependent motor protein that regulates the length of motile cilia by mediating depolymerization of microtubules at ciliary tips. |
| DHCR24 | Delta(24)-sterol reductase | Catalyzes the reduction of the delta-24 double bond of sterol intermediates during cholesterol biosynthesis. |
| PIEZO1 | Piezo-type mechanosensitive ion channel component 1 | Pore-forming subunit of the mechanosensitive non-specific cation Piezo channel required for rapidly adapting mechanically activated (MA) currents and has a key role in sensing touch and tactile pain. |
| ANKS3 | Ankyrin repeat and SAM domain-containing protein 3 | May be involved in vasopressin signaling in the kidney. |
| DNAH14 | Dynein axonemal heavy chain 14 | Force generating protein of respiratory cilia. |
| DNAH9 | Dynein axonemal heavy chain 9 | Force generating protein required for cilia beating in respiratory epithelia. |
| MYBPHL | Myosin-binding protein H-like | Myosin-binding protein which plays a role in cardiac function. |
| EPHB4 | Ephrin type-B receptor 4 | Receptor tyrosine kinase which binds promiscuously transmembrane ephrin-B family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. |
| FEN1 | Flap endonuclease 1 | Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. |
| FLT4 | Vascular endothelial growth factor receptor 3 | Tyrosine-protein kinase that acts as a cell-surface receptor for VEGFC and VEGFD, and plays an essential role in adult lymphangiogenesis and in the development of the vascular network and the cardiovascular system during embryonic developm… |
| FOXC2 | Forkhead box protein C2 | Transcriptional activator. |
| FZD6 | Frizzled-6 | Receptor for Wnt proteins. |
| GUSB | Beta-glucuronidase | Plays an important role in the degradation of dermatan and keratan sulfates. |
| HBA2 | Hemoglobin subunit alpha | Involved in oxygen transport from the lung to the various peripheral tissues. |
| HRAS | GTPase HRas | Involved in the activation of Ras protein signal transduction. |
| KRAS | GTPase KRas | Ras proteins bind GDP/GTP and possess intrinsic GTPase activity. |
| LZTR1 | Leucine-zipper-like transcriptional regulator 1 | Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex that mediates ubiquitination of Ras (K-Ras/KRAS, N-Ras/NRAS and H-Ras/HRAS). |
| MYOM1 | Myomesin-1 | Major component of the vertebrate myofibrillar M band. |
| NEB | Nebulin | This giant muscle protein may be involved in maintaining the structural integrity of sarcomeres and the membrane system associated with the myofibrils. |
| NEU1 | Sialidase-1 | Catalyzes the removal of sialic acid (N-acetylneuraminic acid) moieties from glycoproteins and glycolipids. |
| CTSA | Lysosomal protective protein | Protective protein appears to be essential for both the activity of beta-galactosidase and neuraminidase, it associates with these enzymes and exerts a protective function necessary for their stability and activity. |
| PTPN11 | Tyrosine-protein phosphatase non-receptor type 11 | Acts downstream of various receptor and cytoplasmic protein tyrosine kinases to participate in the signal transduction from the cell surface to the nucleus. |
Protein-family classification
Druggable: 18 · Difficult: 7 · Unknown: 18 · Druggable fraction: 0.42
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Antibody/Immunoglobulin | 4 | 2.7× | 0.316 |
| Enzyme (other) | 7 | 1.9× | 0.316 |
| Kinase | 3 | 1.9× | 0.673 |
| Phosphatase | 1 | 1.9× | 0.854 |
| Transporter | 1 | 1.8× | 0.854 |
| Transcription factor | 5 | 1.0× | 0.899 |
| Protease | 1 | 0.8× | 0.899 |
| Scaffold/PPI | 2 | 0.8× | 0.899 |
| GPCR | 1 | 0.6× | 0.934 |
| Other/Unknown | 18 | 0.8× | 0.977 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| THSD1 | Other/Unknown | no | TSP1_rpt, TSP1_rpt_sf, THSD1 | |
| EHBP1L1 | Other/Unknown | no | CH_dom, NT-C2, bMERB_dom | |
| RIT1 | Other/Unknown | no | Small_GTPase, Small_GTP-bd, Small_GTPase_Ras-type | |
| ROCK2 | Kinase | yes | Prot_kinase_dom, AGC-kinase_C, PH_domain | |
| ARID1A | Other/Unknown | no | ARID_dom, ARM-like, ARM-type_fold | |
| MYRF | Transcription factor | no | p53-like_TF_DNA-bd_sf, NDT80_DNA-bd_dom, MYRF_C2 | |
| UBN1 | Other/Unknown | no | HRD, UBN_middle_dom | |
| ACTA1 | Other/Unknown | no | Actin, Actin_CS, Actin/actin-like_CS | |
| NSD1 | Transcription factor | no | 2.1.1.357 | PWWP_dom, SET_dom, Znf_PHD |
| SHOC2 | Other/Unknown | no | Leu-rich_rpt, Leu-rich_rpt_typical-subtyp, LRR_dom_sf | |
| MOCS3 | Enzyme (other) | yes | 2.7.7.80 | ThiF_NAD_FAD-bd, Rhodanese-like_dom, MOCS3/Uba4 |
| SUZ12 | Transcription factor | no | Polycomb_protein_VEFS-Box, Znf_SUZ12 | |
| PRPF19 | Transcription factor | no | WD40_rpt, Ubox_domain, Znf_RING/FYVE/PHD | |
| FCRL4 | Antibody/Immunoglobulin | yes | Ig_sub2, Ig_sub, Ig-like_dom | |
| SERPINA11 | Other/Unknown | no | Serpin_fam, Serpin_dom, Serpin_sf | |
| CHRNA1 | Other/Unknown | no | Nicotinic_acetylcholine_rcpt, Neurotrans-gated_channel_TM, Neur_channel | |
| GALNT14 | Enzyme (other) | yes | 2.4.1.41 | Ricin_B_lectin, Glyco_trans_2-like, Nucleotide-diphossugar_trans |
| VPS13D | Other/Unknown | no | UBA-like_sf, VPS13_VAB, UBA | |
| KIF19 | Other/Unknown | no | Kinesin_motor_dom, Kinesin_motor_CS, P-loop_NTPase | |
| SVOPL | Transporter | yes | MFS_sugar_transport-like, MFS, MFS_dom | |
| DHCR24 | Enzyme (other) | yes | 1.3.1.72 | Oxid_FAD_bind_N, FAD-bd_PCMH, FAD-bd_PCMH_sub2 |
| PIEZO1 | Other/Unknown | no | Piezo, Piezo_cap_dom, Piezo_TM25-28 | |
| ANKS3 | Scaffold/PPI | no | SAM, Ankyrin_rpt, SAM/pointed_sf | |
| DNAH14 | Other/Unknown | no | Dhc_D4, Dynein_HC_stalk, DHC | |
| DNAH9 | Other/Unknown | no | AAA+_ATPase, Dhc_D6_P-loop, Dynein_heavy_tail | |
| C1orf105 | Other/Unknown | no | DUF4548 | |
| MYBPHL | Antibody/Immunoglobulin | yes | Ig_sub2, Ig_sub, FN3_dom | |
| EPHB4 | Kinase | yes | 2.7.10.1 | Prot_kinase_dom, EPH_LBD, Ser-Thr/Tyr_kinase_cat_dom |
| FEN1 | Enzyme (other) | yes | 3.1.99.B1 | XPG/Rad2, XPG_DNA_repair_N, XPG-I_dom |
| FLT4 | Kinase | yes | 2.7.10.1 | Prot_kinase_dom, Ser-Thr/Tyr_kinase_cat_dom, Tyr_kinase_rcpt_3_CS |
| FOXC2 | Transcription factor | no | Fork_head_dom, TF_fork_head_CS_1, TF_fork_head_CS_2 | |
| FZD6 | GPCR | yes | Frizzled/Smoothened_7TM, Frizzled/SFRP, GPCR_2-like_7TM | |
| GUSB | Antibody/Immunoglobulin | yes | 3.2.1.31 | Glyco_hydro_2, Ig-like_GH2, Glyco_hydro_2_cat |
| HBA2 | Other/Unknown | no | Globin, Hemoglobin_a-typ, Hemoglobin_pi | |
| HRAS | Enzyme (other) | yes | 3.6.5.2 | Small_GTPase, Small_GTP-bd, Small_GTPase_Ras-type |
| HSALR1 | Other/Unknown | no | ||
| KRAS | Enzyme (other) | yes | 3.6.5.2 | Small_GTPase, Small_GTP-bd, Small_GTPase_Ras-type |
| LZTR1 | Other/Unknown | no | BTB/POZ_dom, Kelch_1, SKP1/BTB/POZ_sf | |
| MYOM1 | Antibody/Immunoglobulin | yes | Ig_sub2, Ig_sub, FN3_dom | |
| NEB | Scaffold/PPI | no | Nebulin_repeat, SH3_domain, Nebulin-like | |
| NEU1 | Enzyme (other) | yes | 3.2.1.18 | Sialidase, Sialidase_fam, Sialidase_sf |
| CTSA | Protease | yes | 3.4.16.5 | Peptidase_S10, Ser_caboxypep_ser_AS, AB_hydrolase_fold |
| PTPN11 | Phosphatase | yes | 3.1.3.48 | PTP_cat, Tyr_Pase_dom, SH2 |
Expression context
Cohort genes with no expression data: 0.
37 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 43 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| sural nerve | 6 |
| gluteal muscle | 4 |
| calcaneal tendon | 3 |
| colonic epithelium | 3 |
| lower esophagus mucosa | 3 |
| male germ line stem cell (sensu Vertebrata) in testis | 3 |
| right adrenal gland | 3 |
| right adrenal gland cortex | 3 |
| ventricular zone | 2 |
| monocyte | 2 |
| bone marrow cell | 2 |
| secondary oocyte | 2 |
| tendon of biceps brachii | 2 |
| male germ cell | 2 |
| sperm | 2 |
| buccal mucosa cell | 2 |
| skin of abdomen | 2 |
| skin of leg | 2 |
| right uterine tube | 2 |
| oocyte | 2 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| THSD1 | 138 | broad | marker | ventricular zone, right lung, apex of heart |
| EHBP1L1 | 233 | ubiquitous | marker | granulocyte, lower esophagus, lower esophagus muscularis layer |
| RIT1 | 268 | ubiquitous | marker | monocyte, mononuclear cell, leukocyte |
| ROCK2 | 290 | ubiquitous | marker | calcaneal tendon, colonic epithelium, middle temporal gyrus |
| ARID1A | 286 | ubiquitous | marker | bone marrow cell, ventricular zone, embryo |
| MYRF | 223 | ubiquitous | marker | middle frontal gyrus, C1 segment of cervical spinal cord, inferior vagus X ganglion |
| UBN1 | 296 | ubiquitous | marker | lower esophagus mucosa, tendon of biceps brachii, secondary oocyte |
| ACTA1 | 203 | broad | marker | gluteal muscle, skeletal muscle tissue of biceps brachii, diaphragm |
| NSD1 | 235 | ubiquitous | marker | sural nerve, colonic epithelium, calcaneal tendon |
| SHOC2 | 299 | ubiquitous | marker | calcaneal tendon, sural nerve, bone marrow |
| MOCS3 | 188 | ubiquitous | yes | sperm, male germ cell, male germ line stem cell (sensu Vertebrata) in testis |
| SUZ12 | 288 | ubiquitous | marker | trabecular bone tissue, mucosa of paranasal sinus, buccal mucosa cell |
| PRPF19 | 286 | ubiquitous | marker | pons, right frontal lobe, Brodmann (1909) area 9 |
| FCRL4 | 49 | tissue_specific | marker | buccal mucosa cell, epithelium of nasopharynx, male germ line stem cell (sensu Vertebrata) in testis |
| SERPINA11 | 50 | tissue_specific | yes | right lobe of liver, liver, minor salivary gland |
| CHRNA1 | 149 | broad | marker | gastrocnemius, gluteal muscle, muscle of leg |
| GALNT14 | 194 | broad | marker | lower esophagus mucosa, adult mammalian kidney, nephron tubule |
| VPS13D | 299 | ubiquitous | marker | skin of leg, skin of abdomen, sural nerve |
| KIF19 | 159 | broad | marker | right uterine tube, sural nerve, tibial nerve |
| SVOPL | 135 | tissue_specific | marker | secondary oocyte, oocyte, olfactory segment of nasal mucosa |
| DHCR24 | 281 | ubiquitous | marker | adrenal tissue, right adrenal gland cortex, right adrenal gland |
| PIEZO1 | 142 | ubiquitous | marker | muscle layer of sigmoid colon, lower esophagus mucosa, upper lobe of left lung |
| ANKS3 | 195 | ubiquitous | yes | cerebellar hemisphere, right hemisphere of cerebellum, cerebellar cortex |
| DNAH14 | 172 | ubiquitous | marker | left testis, right testis, adrenal tissue |
| DNAH9 | 184 | broad | marker | right uterine tube, bronchial epithelial cell, epithelium of bronchus |
| C1orf105 | 139 | tissue_specific | marker | sperm, male germ cell, left testis |
| MYBPHL | 123 | tissue_specific | yes | right atrium auricular region, male germ line stem cell (sensu Vertebrata) in testis, Ammon’s horn |
| EPHB4 | 282 | ubiquitous | marker | olfactory bulb, type B pancreatic cell, body of uterus |
| FEN1 | 281 | ubiquitous | marker | endometrium epithelium, oocyte, cervix squamous epithelium |
| FLT4 | 172 | broad | marker | right lobe of thyroid gland, left lobe of thyroid gland, thyroid gland |
Protein interactions among cohort
Intra-cohort edges: 17.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| KRAS | 14,509 |
| HRAS | 8,064 |
| PTPN11 | 6,009 |
| FEN1 | 4,897 |
| PRPF19 | 4,658 |
| SUZ12 | 4,349 |
| ROCK2 | 4,121 |
| GUSB | 3,659 |
| ARID1A | 3,476 |
| RIT1 | 3,298 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| CTSA | NEU1 | string_interaction |
| DHCR24 | HRAS | biogrid_interaction |
| DNAH9 | THSD1 | string_interaction |
| FCRL4 | PTPN11 | string_interaction |
| FEN1 | MYRF | string_interaction |
| FLT4 | FOXC2 | string_interaction |
| HRAS | LZTR1 | biogrid_interaction |
| HRAS | SHOC2 | intact, string_interaction |
| KRAS | LZTR1 | string_interaction |
| KRAS | SHOC2 | intact, string_interaction |
| LZTR1 | RIT1 | biogrid_interaction, intact, string_interaction |
| LZTR1 | SHOC2 | string_interaction |
| MYBPHL | PRPF19 | string_interaction |
| MYOM1 | NEB | string_interaction |
| PRPF19 | PTPN11 | string_interaction |
| PTPN11 | SHOC2 | string_interaction |
| RIT1 | SHOC2 | string_interaction |
Structural data
PDB: 29 · AlphaFold-only: 13 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| KRAS | P01116 | 511 |
| HBA2 | P69905 | 356 |
| HRAS | P01112 | 246 |
| PTPN11 | Q06124 | 115 |
| SUZ12 | Q15022 | 30 |
| FEN1 | P39748 | 28 |
| PRPF19 | Q9UMS4 | 23 |
| EPHB4 | P54760 | 23 |
| ROCK2 | O75116 | 21 |
| CHRNA1 | P02708 | 15 |
| SHOC2 | Q9UQ13 | 13 |
| CTSA | P10619 | 12 |
| MYOM1 | P52179 | 9 |
| ARID1A | O14497 | 7 |
| PIEZO1 | Q92508 | 6 |
| FOXC2 | Q99958 | 6 |
| ACTA1 | P68133 | 5 |
| NSD1 | Q96L73 | 4 |
| RIT1 | Q92963 | 3 |
| LZTR1 | Q8N653 | 3 |
| NEB | P20929 | 3 |
| MYRF | Q9Y2G1 | 2 |
| ANKS3 | Q6ZW76 | 2 |
| FLT4 | P35916 | 2 |
| FZD6 | O60353 | 2 |
| GUSB | P08236 | 2 |
| UBN1 | Q9NPG3 | 1 |
| MOCS3 | O95396 | 1 |
| DNAH9 | Q9NYC9 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| DHCR24 | Q15392 | 92.40 |
| GALNT14 | Q96FL9 | 89.23 |
| NEU1 | Q99519 | 89.12 |
| MYBPHL | A2RUH7 | 86.64 |
| SVOPL | Q8N434 | 84.29 |
| SERPINA11 | Q86U17 | 83.27 |
| FCRL4 | Q96PJ5 | 78.56 |
| KIF19 | Q2TAC6 | 65.40 |
| THSD1 | Q9NS62 | 59.46 |
| C1orf105 | O95561 | 57.57 |
| EHBP1L1 | Q8N3D4 | 49.98 |
| VPS13D | Q5THJ4 | |
| DNAH14 | Q0VDD8 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 286. Enrichment computed across 43 evidence-associated genes (29 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 29 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Signaling by RAS GAP mutants | 2 | 262.5× | 9e-04 | HRAS, KRAS |
| Signaling by RAS GTPase mutants | 2 | 262.5× | 9e-04 | HRAS, KRAS |
| Activated NTRK2 signals through FRS2 and FRS3 | 3 | 98.5× | 9e-04 | HRAS, KRAS, PTPN11 |
| Signaling by FLT3 ITD and TKD mutants | 3 | 78.8× | 9e-04 | HRAS, KRAS, PTPN11 |
| Tie2 Signaling | 3 | 62.2× | 9e-04 | HRAS, KRAS, PTPN11 |
| FRS-mediated FGFR3 signaling | 3 | 56.3× | 9e-04 | HRAS, KRAS, PTPN11 |
| FRS-mediated FGFR4 signaling | 3 | 51.4× | 0.001 | HRAS, KRAS, PTPN11 |
| Defective NEU1 causes sialidosis | 2 | 196.9× | 0.001 | NEU1, CTSA |
| FRS-mediated FGFR1 signaling | 3 | 47.3× | 0.001 | HRAS, KRAS, PTPN11 |
| FRS-mediated FGFR2 signaling | 3 | 45.4× | 0.001 | HRAS, KRAS, PTPN11 |
| Activation of RAS in B cells | 2 | 157.5× | 0.001 | HRAS, KRAS |
| Downstream signal transduction | 3 | 39.4× | 0.001 | HRAS, KRAS, PTPN11 |
| FLT3 Signaling | 3 | 35.8× | 0.002 | HRAS, KRAS, PTPN11 |
| RAF activation | 3 | 34.8× | 0.002 | SHOC2, HRAS, KRAS |
| RAS signaling downstream of NF1 loss-of-function variants | 2 | 112.5× | 0.002 | HRAS, KRAS |
| Estrogen-stimulated signaling through PRKCZ | 2 | 112.5× | 0.002 | HRAS, KRAS |
| SOS-mediated signalling | 2 | 98.5× | 0.003 | HRAS, KRAS |
| EPHB-mediated forward signaling | 3 | 27.5× | 0.003 | ROCK2, EPHB4, HRAS |
| Signaling by SCF-KIT | 3 | 25.7× | 0.003 | HRAS, KRAS, PTPN11 |
| Activated NTRK3 signals through RAS | 2 | 87.5× | 0.003 | HRAS, KRAS |
| EGFR Transactivation by Gastrin | 2 | 78.8× | 0.003 | HRAS, KRAS |
| SHC-related events triggered by IGF1R | 2 | 78.8× | 0.003 | HRAS, KRAS |
| Activated NTRK2 signals through RAS | 2 | 78.8× | 0.003 | HRAS, KRAS |
| MET activates RAS signaling | 2 | 71.6× | 0.004 | HRAS, KRAS |
| Signaling by FGFR4 in disease | 2 | 65.6× | 0.004 | HRAS, KRAS |
| Constitutive Signaling by Overexpressed ERBB2 | 2 | 65.6× | 0.004 | HRAS, KRAS |
| p38MAPK events | 2 | 60.6× | 0.005 | HRAS, KRAS |
| Signaling by PDGFRA transmembrane, juxtamembrane and kinase domain mutants | 2 | 60.6× | 0.005 | HRAS, KRAS |
| Signaling by PDGFRA extracellular domain mutants | 2 | 60.6× | 0.005 | HRAS, KRAS |
| PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases | 2 | 56.3× | 0.005 | HRAS, KRAS |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 37 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Ras protein signal transduction | 4 | 22.2× | 0.012 | RIT1, DHCR24, HRAS, KRAS |
| positive regulation of connective tissue growth factor production | 1 | 455.5× | 0.059 | ROCK2 |
| regulation of peptidyl-serine phosphorylation | 1 | 455.5× | 0.059 | NSD1 |
| response to mineralocorticoid | 1 | 455.5× | 0.059 | KRAS |
| negative regulation of cortisol secretion | 1 | 455.5× | 0.059 | PTPN11 |
| negative regulation of growth hormone secretion | 1 | 455.5× | 0.059 | PTPN11 |
| axonemal microtubule depolymerization | 1 | 455.5× | 0.059 | KIF19 |
| plus-end specific microtubule depolymerization | 1 | 455.5× | 0.059 | KIF19 |
| cellular response to growth hormone stimulus | 1 | 455.5× | 0.059 | SHOC2 |
| regulation of RNA polymerase II regulatory region sequence-specific DNA binding | 1 | 455.5× | 0.059 | NSD1 |
| lymphangiogenesis | 2 | 65.1× | 0.059 | FLT4, FOXC2 |
| regulation of long-term neuronal synaptic plasticity | 2 | 53.6× | 0.059 | HRAS, KRAS |
| cilium movement involved in cell motility | 2 | 36.4× | 0.059 | DNAH14, DNAH9 |
| blood vessel diameter maintenance | 2 | 33.7× | 0.059 | ROCK2, FOXC2 |
| cardiac muscle cell proliferation | 2 | 31.4× | 0.059 | FOXC2, KRAS |
| apoptotic process involved in outflow tract morphogenesis | 1 | 227.7× | 0.064 | FOXC2 |
| growth plate cartilage morphogenesis | 1 | 227.7× | 0.064 | GUSB |
| microvillus organization | 1 | 227.7× | 0.064 | PTPN11 |
| paraxial mesodermal cell fate commitment | 1 | 227.7× | 0.064 | FOXC2 |
| intestinal epithelial cell migration | 1 | 227.7× | 0.064 | PTPN11 |
| regulation of angiotensin-activated signaling pathway | 1 | 227.7× | 0.064 | ROCK2 |
| negative regulation of protein localization to lysosome | 1 | 227.7× | 0.064 | ROCK2 |
| negative regulation of apoptotic process involved in outflow tract morphogenesis | 1 | 227.7× | 0.064 | FOXC2 |
| vascular endothelial growth factor receptor signaling pathway | 2 | 26.0× | 0.064 | FLT4, FOXC2 |
| homeostasis of number of cells within a tissue | 2 | 24.0× | 0.064 | KRAS, PTPN11 |
| response to hormone | 2 | 23.4× | 0.064 | DHCR24, FOXC2 |
| oligodendrocyte differentiation | 2 | 22.8× | 0.064 | MYRF, SUZ12 |
| DNA damage checkpoint signaling | 2 | 21.2× | 0.064 | PRPF19, PTPN11 |
| cerebellar cortex formation | 1 | 151.8× | 0.065 | PTPN11 |
| forebrain astrocyte development | 1 | 151.8× | 0.065 | KRAS |
Therapeutics
Drug target analysis
Approved (phase 4): 12 · Phase ≥3: 12 · Phased (≥1): 12 · Undrugged: 31
Druggability breadth: 21 of 43 evidence-associated genes (49%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| ROCK2 | MOMELOTINIB |
| NSD1 | VENETOCLAX |
| SUZ12 | TAZEMETOSTAT |
| CHRNA1 | VARENICLINE |
| DHCR24 | GILTERITINIB |
| EPHB4 | PONATINIB |
| FLT4 | FEDRATINIB |
| GUSB | PRASTERONE |
| HRAS | LONAFARNIB |
| KRAS | VEMURAFENIB |
| CTSA | ISOFLUROPHATE |
| PTPN11 | ESTRAMUSTINE PHOSPHATE |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| FLT4 | 72 | 4 |
| ROCK2 | 52 | 4 |
| EPHB4 | 46 | 4 |
| CHRNA1 | 12 | 4 |
| KRAS | 11 | 4 |
| PTPN11 | 8 | 4 |
| NSD1 | 7 | 4 |
| HRAS | 4 | 4 |
| SUZ12 | 2 | 4 |
| GUSB | 2 | 4 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| MOMELOTINIB | 4 | ROCK2 |
| FEDRATINIB | 4 | EPHB4, FLT4, ROCK2 |
| RUXOLITINIB | 4 | ROCK2 |
| PALBOCICLIB | 4 | ROCK2 |
| BELUMOSUDIL | 4 | ROCK2 |
| TOFACITINIB CITRATE | 4 | ROCK2 |
| BARICITINIB | 4 | ROCK2 |
| TOFACITINIB | 4 | ROCK2 |
| CAPIVASERTIB | 4 | ROCK2 |
| CERITINIB | 4 | ROCK2 |
| VANDETANIB | 4 | EPHB4, FLT4, ROCK2 |
| BOSUTINIB | 4 | EPHB4, ROCK2 |
| UPADACITINIB | 4 | ROCK2 |
| NETARSUDIL | 4 | ROCK2 |
| SUNITINIB | 4 | EPHB4, FLT4, ROCK2 |
| CRIZOTINIB | 4 | EPHB4, ROCK2 |
| MIDOSTAURIN | 4 | FLT4, ROCK2 |
| VENETOCLAX | 4 | NSD1 |
| PRIMAQUINE | 4 | NSD1 |
| CHLOROQUINE PHOSPHATE | 4 | NSD1 |
| TAZEMETOSTAT | 4 | SUZ12 |
| VARENICLINE | 4 | CHRNA1 |
| NICOTINE | 4 | CHRNA1 |
| TROPISETRON | 4 | CHRNA1 |
| BUPROPION | 4 | CHRNA1 |
| MECAMYLAMINE | 4 | CHRNA1 |
| GILTERITINIB | 4 | DHCR24 |
| PONATINIB | 4 | EPHB4 |
| TIVOZANIB | 4 | EPHB4, FLT4 |
| SORAFENIB | 4 | EPHB4, FLT4 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 13.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| KRAS | 861 | Binding:829, Functional:32 |
| ROCK2 | 788 | Binding:783, Functional:3, ADMET:1, Toxicity:1 |
| FLT4 | 717 | Binding:683, Functional:32, ADMET:2 |
| PTPN11 | 588 | Binding:585, Functional:2, ADMET:1 |
| EPHB4 | 437 | Binding:437 |
| CHRNA1 | 157 | Binding:107, Functional:47, ADMET:2, Toxicity:1 |
| NSD1 | 90 | Binding:90 |
| HBA2 | 59 | Binding:46, Functional:13 |
| SUZ12 | 51 | Binding:51 |
| HRAS | 48 | Binding:45, Functional:3 |
| GUSB | 41 | Binding:38, ADMET:3 |
| NEU1 | 27 | Binding:27 |
| CTSA | 19 | Binding:13, ADMET:6 |
| PIEZO1 | 17 | Binding:17 |
| FEN1 | 15 | Binding:12, Functional:3 |
| DHCR24 | 10 | Binding:10 |
| PRPF19 | 7 | Binding:7 |
| ARID1A | 6 | Binding:6 |
| MOCS3 | 2 | Binding:2 |
| FOXC2 | 2 | Binding:2 |
| GALNT14 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| NSD1 | 2.1.1.357, 2.1.1.362 | [histone H3]-lysine36 N-dimethyltransferase, [histone H4]-N-methyl-L-lysine20 N-methyltransferase |
| MOCS3 | 2.7.7.80, 2.8.1.11 | molybdopterin-synthase adenylyltransferase, molybdopterin synthase sulfurtransferase |
| GALNT14 | 2.4.1.41 | polypeptide N-acetylgalactosaminyltransferase |
| DHCR24 | 1.3.1.72 | DELTA24-sterol reductase |
| EPHB4 | 2.7.10.1 | receptor protein-tyrosine kinase |
| FEN1 | 3.1.99.B1 | |
| FLT4 | 2.7.10.1 | receptor protein-tyrosine kinase |
| GUSB | 3.2.1.31 | beta-glucuronidase |
| HRAS | 3.6.5.2 | small monomeric GTPase |
| KRAS | 3.6.5.2 | small monomeric GTPase |
| NEU1 | 3.2.1.18 | exo-alpha-sialidase |
| CTSA | 3.4.16.5 | carboxypeptidase C |
| PTPN11 | 3.1.3.48 | protein-tyrosine-phosphatase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| ROCK2 | 788 |
| CHRNA1 | 157 |
| EPHB4 | 437 |
| FLT4 | 717 |
| KRAS | 861 |
| PTPN11 | 588 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 42; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| MOMELOTINIB | 4 | ROCK2 |
| FEDRATINIB | 4 | EPHB4, FLT4, ROCK2 |
| RUXOLITINIB | 4 | ROCK2 |
| PALBOCICLIB | 4 | ROCK2 |
| BELUMOSUDIL | 4 | ROCK2 |
| TOFACITINIB CITRATE | 4 | ROCK2 |
| BARICITINIB | 4 | ROCK2 |
| TOFACITINIB | 4 | ROCK2 |
| CAPIVASERTIB | 4 | ROCK2 |
| CERITINIB | 4 | ROCK2 |
| VANDETANIB | 4 | EPHB4, FLT4, ROCK2 |
| BOSUTINIB | 4 | EPHB4, ROCK2 |
| UPADACITINIB | 4 | ROCK2 |
| NETARSUDIL | 4 | ROCK2 |
| SUNITINIB | 4 | EPHB4, FLT4, ROCK2 |
| CRIZOTINIB | 4 | EPHB4, ROCK2 |
| MIDOSTAURIN | 4 | FLT4, ROCK2 |
| VENETOCLAX | 4 | NSD1 |
| PRIMAQUINE | 4 | NSD1 |
| CHLOROQUINE PHOSPHATE | 4 | NSD1 |
| TAZEMETOSTAT | 4 | SUZ12 |
| VARENICLINE | 4 | CHRNA1 |
| NICOTINE | 4 | CHRNA1 |
| TROPISETRON | 4 | CHRNA1 |
| BUPROPION | 4 | CHRNA1 |
| MECAMYLAMINE | 4 | CHRNA1 |
| GILTERITINIB | 4 | DHCR24 |
| PONATINIB | 4 | EPHB4 |
| TIVOZANIB | 4 | EPHB4, FLT4 |
| SORAFENIB | 4 | EPHB4, FLT4 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 12 | ROCK2, NSD1, SUZ12, CHRNA1, DHCR24, EPHB4, FLT4, GUSB, HRAS, KRAS (+2 more) |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 4 | MOCS3, FEN1, FZD6, MYOM1 |
| D | Druggable family + AlphaFold only, no drug | 5 | FCRL4, GALNT14, SVOPL, MYBPHL, NEU1 |
| E | Difficult family or no structure, no drug | 22 | THSD1, EHBP1L1, RIT1, ARID1A, MYRF, UBN1, ACTA1, SHOC2, PRPF19, SERPINA11 (+12 more) |
Undrugged target profiles
31 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| PRPF19 | 7 | PTPN11 |
| FCRL4 | 0 | PTPN11 |
| FOXC2 | 2 | FLT4 |
| NEU1 | 27 | CTSA |
| THSD1 | 0 | — |
| EHBP1L1 | 0 | — |
| RIT1 | 0 | — |
| ARID1A | 6 | — |
| MYRF | 0 | — |
| UBN1 | 0 | — |
| ACTA1 | 0 | — |
| SHOC2 | 0 | — |
| MOCS3 | 2 | — |
| SERPINA11 | 0 | — |
| GALNT14 | 1 | — |
| VPS13D | 0 | — |
| KIF19 | 0 | — |
| SVOPL | 0 | — |
| PIEZO1 | 17 | — |
| ANKS3 | 0 | — |
| DNAH14 | 0 | — |
| DNAH9 | 0 | — |
| C1orf105 | 0 | — |
| MYBPHL | 0 | — |
| FEN1 | 15 | — |
| FZD6 | 0 | — |
| HBA2 | 59 | — |
| HSALR1 | 0 | — |
| LZTR1 | 0 | — |
| MYOM1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 2.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 2 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT05528796 | Not specified | ENROLLING_BY_INVITATION | Uncovering the Etiologies of Non-immune Hydrops Fetalis |
| NCT04308603 | Not specified | COMPLETED | Multicentric Prospective Study to Screen Inborn Errors of Metabolism in Non-immune Hydrops (NIH) Fetalis by Massively Parallel Sequencing |
Related Atlas pages
- Cohort genes: THSD1, EHBP1L1, RIT1, ROCK2, ARID1A, MYRF, UBN1, ACTA1, NSD1, SHOC2, MOCS3, SUZ12, PRPF19, FCRL4, SERPINA11, CHRNA1, GALNT14, VPS13D, KIF19, SVOPL, DHCR24, PIEZO1, ANKS3, DNAH14, DNAH9, C1orf105, MYBPHL, EPHB4, FEN1, FLT4, FOXC2, FZD6, GUSB, HBA2, HRAS, HSALR1, KRAS, LZTR1, MYOM1, NEB, NEU1, CTSA, PTPN11