Ollier disease
diseaseOn this page
Also known as dyschondroplasiaenchondromatosismultiple cartilaginous enchondrosesmultiple enchondromatosisOllier type enchondromatosisOllier's diseaseosteochondromatosis
Summary
Ollier disease (MONDO:0008145) is a disease with 6 cohort genes and 5 clinical trials.
At a glance
- Prevalence: 1-9 / 100 000 (Europe) [Orphanet-validated]
- Cohort genes: 6
- ClinVar variants: 16
- Phenotypes (HPO): 26
- Clinical trials: 5
Clinical features
Epidemiology
Prevalence records
1 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Point prevalence | 1-9 / 100 000 | 1 | Europe | Validated |
Signs & symptoms
Clinical features (HPO)
26 HPO clinical features (Orphanet curated; top 26 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0000944 | Abnormal metaphysis morphology | Very frequent (80-99%) |
| HP:0001028 | Hemangioma | Very frequent (80-99%) |
| HP:0002763 | Abnormal cartilage morphology | Very frequent (80-99%) |
| HP:0002797 | Osteolysis | Very frequent (80-99%) |
| HP:0002983 | Micromelia | Very frequent (80-99%) |
| HP:0005701 | Multiple enchondromatosis | Very frequent (80-99%) |
| HP:0100761 | Visceral angiomatosis | Very frequent (80-99%) |
| HP:0001387 | Joint stiffness | Frequent (30-79%) |
| HP:0001482 | Subcutaneous nodule | Frequent (30-79%) |
| HP:0002653 | Bone pain | Frequent (30-79%) |
| HP:0000324 | Facial asymmetry | Occasional (5-29%) |
| HP:0002650 | Scoliosis | Occasional (5-29%) |
| HP:0002664 | Neoplasm | Occasional (5-29%) |
| HP:0002756 | Pathologic fracture | Occasional (5-29%) |
| HP:0002857 | Genu valgum | Occasional (5-29%) |
| HP:0002967 | Cubitus valgus | Occasional (5-29%) |
| HP:0002970 | Genu varum | Occasional (5-29%) |
| HP:0003067 | Madelung deformity | Occasional (5-29%) |
| HP:0004936 | Venous thrombosis | Occasional (5-29%) |
| HP:0006765 | Chondrosarcoma | Occasional (5-29%) |
| HP:0006824 | Cranial nerve paralysis | Occasional (5-29%) |
| HP:0100242 | Sarcoma | Occasional (5-29%) |
| HP:0100559 | Lower limb asymmetry | Occasional (5-29%) |
| HP:0100560 | Upper limb asymmetry | Occasional (5-29%) |
| HP:0100764 | Lymphangioma | Occasional (5-29%) |
| HP:0200042 | Skin ulcer | Occasional (5-29%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | Ollier disease |
| Mondo ID | MONDO:0008145 |
| OMIM | 166000 |
| Orphanet | 296 |
| DOID | DOID:4624 |
| ICD-10-CM | Q78.4 |
| ICD-11 | 1648299787 |
| NCIT | C3008 |
| SNOMED CT | 268274005 |
| UMLS | C0014084 |
| MedGen | 41775 |
| GARD | 0007251 |
| MedDRA | 10014642 |
| NORD | 1526 |
| Is cancer (heuristic) | no |
Also known as: dyschondroplasia · enchondromatosis · multiple cartilaginous enchondroses · multiple enchondromatosis · Ollier disease · Ollier type enchondromatosis · Ollier’s disease · osteochondromatosis
Data availability: 16 ClinVar variants · 1 cell line.
Disease family
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › skeletal dysplasia › Ollier disease
Related subtypes (118): osteochondrodysplasia, diaphyseal medullary stenosis-bone malignancy syndrome, fibular aplasia-ectrodactyly syndrome, cerebrocostomandibular syndrome, cleidorhizomelic syndrome, dyschondrosteosis-nephritis syndrome, dysplasia epiphysealis hemimelica, carpotarsal osteochondromatosis, Camurati-Engelmann disease, genochondromatosis, autosomal dominant osteosclerosis, Worth type, coxopodopatellar syndrome, Lenz-Majewski hyperostotic dwarfism, delayed membranous cranial ossification, metaphyseal dysplasia-maxillary hypoplasia-brachydacty syndrome, oculodentodigital dysplasia, osteoglophonic dysplasia, parietal foramina with cleidocranial dysplasia, chondromalacia patellae, Currarino triad, Proteus syndrome, brachydactyly-elbow wrist dysplasia syndrome, tricho-dento-osseous syndrome, bird headed-dwarfism, Montreal type, Yunis-Varon syndrome, split hand-foot malformation 1 with sensorineural hearing loss, ghosal hematodiaphyseal dysplasia, hyperostosis corticalis generalisata, Larsen-like syndrome, B3GAT3 type, mesomelic dwarfism-cleft palate-camptodactyly syndrome, metaphyseal acroscyphodysplasia, metaphyseal dysostosis-intellectual disability-conductive deafness syndrome, familial osteodysplasia, Anderson type, pseudodiastrophic dysplasia, rhizomelic syndrome, Urbach type, Richieri Costa-Pereira syndrome, craniometadiaphyseal dysplasia, wormian bone type, Weaver syndrome, SHOX-related short stature, craniofrontonasal syndrome, Eiken syndrome, 2q37 microdeletion syndrome, skeletal dysplasia-epilepsy-short stature syndrome, rhizomelic dysplasia, Patterson-Lowry type, pelvic dysplasia-arthrogryposis of lower limbs syndrome, Marshall-Smith syndrome, baby rattle pelvis dysplasia, metaphyseal dysplasia, Braun-Tinschert type, genitopatellar syndrome, osteofibrous dysplasia, Larsen-like osseous dysplasia-short stature syndrome, pancreatic insufficiency-anemia-hyperostosis syndrome, microcephalic primordial dwarfism due to ZNF335 deficiency, Hartsfield-Bixler-Demyer syndrome, colobomatous microphthalmia-rhizomelic dysplasia syndrome, Tatton-Brown-Rahman overgrowth syndrome, tall stature-scoliosis-macrodactyly of the great toes syndrome, Catel-Manzke syndrome, cognitive impairment - coarse facies - heart defects - obesity - pulmonary involvement - short stature - skeletal dysplasia syndrome, skeletal overgrowth-craniofacial dysmorphism-hyperelastic skin-white matter lesions syndrome, complex lethal osteochondrodysplasia, amniotic band syndrome, metaphyseal anadysplasia, syndromic craniosynostosis, thin ribs-tubular bones-dysmorphism syndrome, dysplasia of head of femur, Meyer type, epimetaphyseal skeletal dysplasia, melorheostosis with osteopoikilosis, Cole-Carpenter syndrome, spondylometaphyseal dysplasia, omodysplasia, Bruck syndrome, osteopetrosis, congenital absence of upper arm and forearm with hand present, congenital absence of thigh and lower leg with foot present, congenital absence of both forearm and hand, congenital absence of both lower leg and foot, acheiria, apodia, chondroectodermal dysplasia with night blindness, TRPV4-related bone disorder, adactyly of foot, short stature-advanced bone age-early-onset osteoarthritis syndrome, McCune-Albright syndrome, parietal foramina, Sotos syndrome, dysspondyloenchondromatosis, autosomal recessive cutis laxa type 2, FGFR3-related chondrodysplasia, filamin-related bone disorder, short rib dysplasia, spondylodysplastic dysplasia, acromelic dysplasia, bent bone dysplasia, chondrodysplasia punctata, primary osteolysis, non-syndromic limb reduction defect, Robinow syndrome, synpolydactyly, acrocoxomesomelic dysplasia, bone dysplasia Moore type, bone dysplasia corpus callosum agenesis, type 2 collagenopathy, LRP5-related primary osteoporosis, SLC26A2-related skeletal dysplasia, COMP-related skeletal dysplasia, primordial dwarfism and slender bone disorder, polydactyly-syndactyly-triphalangism, lysosomal storage disease with skeletal involvement, abnormal mineralization disorder, calvarial doughnut lesions with bone fragility and spondylometaphyseal dysplasia, de la Chapelle dysplasia, mesomelic dysplasia-digital anomalies-intellectual disability syndrome, proximal femoral focal deficiency, rhizomelic dysplasia, Ain-Naz type, craniotubular dysplasia, Ikegawa type, TRIP11-related skeletal dysplasia, FAM111A-related skeletal dysplasia
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
16 retrieved; paginated sample, class counts are floors:
5 uncertain significance, 4 likely pathogenic, 3 conflicting classifications of pathogenicity, 2 pathogenic/likely pathogenic, 2 benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 156444 | NM_005896.4(IDH1):c.395G>A (p.Arg132His) | IDH1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 375891 | NM_005896.4(IDH1):c.394C>T (p.Arg132Cys) | IDH1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1803802 | NM_001530.4(HIF1A):c.1892G>A (p.Arg631His) | HIF1A | Likely pathogenic | criteria provided, single submitter |
| 1803804 | NM_001530.4(HIF1A):c.2075C>G (p.Ser692Cys) | HIF1A | Likely pathogenic | criteria provided, single submitter |
| 1803800 | NM_001530.4(HIF1A):c.644C>T (p.Pro215Leu) | HIF1A-AS3 | Likely pathogenic | criteria provided, single submitter |
| 134518 | NM_005896.4(IDH1):c.565A>G (p.Ile189Val) | IDH1 | Likely pathogenic | criteria provided, single submitter |
| 782785 | NM_001530.4(HIF1A):c.1264G>T (p.Asp422Tyr) | HIF1A | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 158664 | NM_002168.4(IDH2):c.1304C>T (p.Thr435Met) | IDH2 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 211176 | NM_002168.4(IDH2):c.673G>A (p.Asp225Asn) | IDH2 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 4279963 | NM_005896.4(IDH1):c.580C>T (p.His194Tyr) | IDH1 | Uncertain significance | criteria provided, single submitter |
| 4279964 | NM_005896.4(IDH1):c.297A>G (p.Ile99Met) | IDH1 | Uncertain significance | criteria provided, single submitter |
| 1803797 | NM_001146696.2(KDM4C):c.11A>G (p.Tyr4Cys) | KDM4C | Uncertain significance | criteria provided, single submitter |
| 1803798 | NM_015061.6(KDM4C):c.2320G>A (p.Ala774Thr) | KDM4C | Uncertain significance | criteria provided, single submitter |
| 161401 | NM_000551.4(VHL):c.538A>G (p.Ile180Val) | LOC107303340 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 161402 | NM_000551.4(VHL):c.154G>A (p.Glu52Lys) | VHL | Benign | reviewed by expert panel |
| 2233 | NM_000551.4(VHL):c.241C>T (p.Pro81Ser) | VHL | Benign | reviewed by expert panel |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 22 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| VHL | Orphanet:238557 | Chuvash erythrocytosis |
| VHL | Orphanet:276621 | Sporadic pheochromocytoma/secreting paraganglioma |
| VHL | Orphanet:29072 | Hereditary pheochromocytoma-paraganglioma |
| VHL | Orphanet:892 | Von Hippel-Lindau disease |
| IDH1 | Orphanet:163634 | Maffucci syndrome |
| IDH1 | Orphanet:251576 | Gliosarcoma |
| IDH1 | Orphanet:251579 | Giant cell glioblastoma |
| IDH1 | Orphanet:296 | Ollier disease |
| IDH1 | Orphanet:86845 | Acute myeloid leukaemia with myelodysplasia-related features |
| IDH1 | Orphanet:99646 | Metaphyseal chondromatosis with D-2-hydroxyglutaric aciduria |
| IDH2 | Orphanet:163634 | Maffucci syndrome |
| IDH2 | Orphanet:251589 | Anaplastic astrocytoma |
| IDH2 | Orphanet:251598 | Protoplasmic astrocytoma |
| IDH2 | Orphanet:251601 | Fibrillary astrocytoma |
| IDH2 | Orphanet:251604 | Gemistocytic astrocytoma |
| IDH2 | Orphanet:251627 | Oligodendroglioma |
| IDH2 | Orphanet:251630 | Anaplastic oligodendroglioma |
| IDH2 | Orphanet:251656 | Oligoastrocytoma |
| IDH2 | Orphanet:251663 | Anaplastic oligoastrocytoma |
| IDH2 | Orphanet:296 | Ollier disease |
| IDH2 | Orphanet:79315 | D-2-hydroxyglutaric aciduria |
| IDH2 | Orphanet:86845 | Acute myeloid leukaemia with myelodysplasia-related features |
Cohort genes → proteins
6 cohort genes, 5 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 6 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| VHL | HGNC:12687 | ENSG00000134086 | P40337 | von Hippel-Lindau disease tumor suppressor | clinvar |
| KDM4C | HGNC:17071 | ENSG00000107077 | Q9H3R0 | Lysine-specific demethylase 4C | clinvar |
| HIF1A-AS1 | HGNC:43014 | ENSG00000258777 | HIF1A antisense RNA 1 | clinvar | |
| HIF1A | HGNC:4910 | ENSG00000100644 | Q16665 | Hypoxia-inducible factor 1-alpha | clinvar |
| IDH1 | HGNC:5382 | ENSG00000138413 | O75874 | Isocitrate dehydrogenase [NADP] cytoplasmic | clinvar |
| IDH2 | HGNC:5383 | ENSG00000182054 | P48735 | Isocitrate dehydrogenase [NADP], mitochondrial | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| VHL | von Hippel-Lindau disease tumor suppressor | Involved in the ubiquitination and subsequent proteasomal degradation via the von Hippel-Lindau ubiquitination complex. |
| KDM4C | Lysine-specific demethylase 4C | Histone demethylase that specifically demethylates ‘Lys-9’ and ‘Lys-36’ residues of histone H3, thereby playing a central role in histone code. |
| HIF1A | Hypoxia-inducible factor 1-alpha | Functions as a master transcriptional regulator of the adaptive response to hypoxia. |
| IDH1 | Isocitrate dehydrogenase [NADP] cytoplasmic | Catalyzes the NADP(+)-dependent oxidative decarboxylation of isocitrate (D-threo-isocitrate) to 2-ketoglutarate (2-oxoglutarate), which is required by other enzymes such as the phytanoyl-CoA dioxygenase. |
| IDH2 | Isocitrate dehydrogenase [NADP], mitochondrial | Plays a role in intermediary metabolism and energy production. |
Protein-family classification
Druggable: 3 · Difficult: 2 · Unknown: 1 · Druggable fraction: 0.5
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Enzyme (other) | 3 | 6.0× | 0.029 |
| Transcription factor | 2 | 2.8× | 0.237 |
| Other/Unknown | 1 | 0.3× | 0.993 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| VHL | Enzyme (other) | yes | 2.3.2.B13 | VHL_tumour_suppress_b/a_dom, VHL_alpha_dom, VHL_beta_dom |
| KDM4C | Transcription factor | no | 1.14.11.27 | Znf_PHD, Tudor, JmjC_dom |
| HIF1A-AS1 | Other/Unknown | no | ||
| HIF1A | Transcription factor | no | PAS, HIF-1_alpha, PAC | |
| IDH1 | Enzyme (other) | yes | 1.1.1.42 | Isocitrate_DH_NADP, IsoCit/isopropylmalate_DH_CS, IsoPropMal-DH-like_dom |
| IDH2 | Enzyme (other) | yes | 1.1.1.42 | Isocitrate_DH_NADP, IsoCit/isopropylmalate_DH_CS, IsoPropMal-DH-like_dom |
Expression context
Cohort genes with no expression data: 0.
5 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 6 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| corpus epididymis | 2 |
| cortical plate | 1 |
| monocyte | 1 |
| mononuclear cell | 1 |
| cerebellar cortex | 1 |
| cerebellar hemisphere | 1 |
| right hemisphere of cerebellum | 1 |
| ganglionic eminence | 1 |
| male germ line stem cell (sensu Vertebrata) in testis | 1 |
| ventricular zone | 1 |
| epithelial cell of pancreas | 1 |
| pancreatic ductal cell | 1 |
| adrenal tissue | 1 |
| jejunal mucosa | 1 |
| apex of heart | 1 |
| gastrocnemius | 1 |
| hindlimb stylopod muscle | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| VHL | 186 | ubiquitous | marker | cortical plate, monocyte, mononuclear cell |
| KDM4C | 250 | ubiquitous | marker | right hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex |
| HIF1A-AS1 | 117 | broad | yes | male germ line stem cell (sensu Vertebrata) in testis, ganglionic eminence, ventricular zone |
| HIF1A | 295 | ubiquitous | marker | pancreatic ductal cell, epithelial cell of pancreas, corpus epididymis |
| IDH1 | 294 | ubiquitous | marker | corpus epididymis, jejunal mucosa, adrenal tissue |
| IDH2 | 292 | ubiquitous | marker | apex of heart, gastrocnemius, hindlimb stylopod muscle |
Protein interactions among cohort
Intra-cohort edges: 3.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| HIF1A | 9,734 |
| IDH1 | 5,464 |
| IDH2 | 4,912 |
| VHL | 3,522 |
| KDM4C | 1,380 |
| HIF1A-AS1 | 0 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| HIF1A | KDM4C | biogrid_interaction, string_interaction |
| HIF1A | VHL | biogrid_interaction, intact, string_interaction |
| IDH1 | IDH2 | biogrid_interaction |
Structural data
PDB: 5 · AlphaFold-only: 0 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| VHL | P40337 | 142 |
| IDH1 | O75874 | 61 |
| HIF1A | Q16665 | 25 |
| IDH2 | P48735 | 11 |
| KDM4C | Q9H3R0 | 7 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 34. Enrichment computed across 6 evidence-associated genes (5 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Abnormal conversion of 2-oxoglutarate to 2-hydroxyglutarate | 1 | 2284.0× | 0.007 | IDH1 |
| Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha | 2 | 78.8× | 0.007 | VHL, HIF1A |
| NADPH regeneration | 1 | 1142.0× | 0.010 | IDH1 |
| NFE2L2 regulating TCA cycle genes | 1 | 761.3× | 0.010 | IDH1 |
| Replication of the SARS-CoV-1 genome | 1 | 571.0× | 0.010 | VHL |
| Replication of the SARS-CoV-2 genome | 1 | 571.0× | 0.010 | VHL |
| PTK6 Expression | 1 | 380.7× | 0.013 | HIF1A |
| PTK6 promotes HIF1A stabilization | 1 | 326.3× | 0.013 | HIF1A |
| RHOBTB3 ATPase cycle | 1 | 228.4× | 0.015 | VHL |
| STAT3 nuclear events downstream of ALK signaling | 1 | 207.6× | 0.015 | HIF1A |
| Regulation of gene expression by Hypoxia-inducible Factor | 1 | 190.3× | 0.015 | HIF1A |
| Cellular response to hypoxia | 1 | 175.7× | 0.015 | HIF1A |
| Neddylation | 2 | 18.9× | 0.015 | VHL, HIF1A |
| Maturation of TCA enzymes and regulation of TCA cycle | 1 | 114.2× | 0.021 | IDH2 |
| Citric acid cycle (TCA cycle) | 1 | 84.6× | 0.027 | IDH2 |
| RHO GTPases activate PKNs | 1 | 63.4× | 0.033 | KDM4C |
| SUMOylation of ubiquitinylation proteins | 1 | 58.6× | 0.034 | VHL |
| NOTCH1 Intracellular Domain Regulates Transcription | 1 | 47.6× | 0.039 | HIF1A |
| HDMs demethylate histones | 1 | 45.7× | 0.039 | KDM4C |
| Transcriptional activation of mitochondrial biogenesis | 1 | 40.8× | 0.041 | IDH2 |
| Peroxisomal protein import | 1 | 34.6× | 0.045 | IDH1 |
| Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 | 1 | 33.6× | 0.045 | KDM4C |
| Mitochondrial protein degradation | 1 | 22.8× | 0.064 | IDH2 |
| Regulation of PD-L1(CD274) transcription | 1 | 21.8× | 0.064 | HIF1A |
| Interleukin-4 and Interleukin-13 signaling | 1 | 20.6× | 0.065 | HIF1A |
| Chromatin organization | 1 | 16.3× | 0.078 | KDM4C |
| Chromatin modifying enzymes | 1 | 14.5× | 0.085 | KDM4C |
| RHO GTPase Effectors | 1 | 13.6× | 0.087 | KDM4C |
| Ub-specific processing proteases | 1 | 10.6× | 0.106 | HIF1A |
| Antigen processing: Ubiquitination & Proteasome degradation | 1 | 7.4× | 0.144 | VHL |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| glyoxylate cycle | 2 | 3370.4× | 9e-06 | IDH1, IDH2 |
| isocitrate metabolic process | 2 | 1348.2× | 4e-05 | IDH1, IDH2 |
| NADP+ metabolic process | 2 | 612.8× | 2e-04 | IDH1, IDH2 |
| 2-oxoglutarate metabolic process | 2 | 374.5× | 3e-04 | IDH1, IDH2 |
| regulation of gene expression | 3 | 50.1× | 4e-04 | VHL, KDM4C, HIF1A |
| tricarboxylic acid cycle | 2 | 204.3× | 8e-04 | IDH1, IDH2 |
| regulation of phospholipid catabolic process | 1 | 3370.4× | 0.005 | IDH1 |
| elastin metabolic process | 1 | 1685.2× | 0.006 | HIF1A |
| positive regulation of chemokine-mediated signaling pathway | 1 | 1685.2× | 0.006 | HIF1A |
| regulation of phospholipid biosynthetic process | 1 | 1685.2× | 0.006 | IDH1 |
| negative regulation of glial cell migration | 1 | 1685.2× | 0.006 | IDH2 |
| negative regulation of matrix metallopeptidase secretion | 1 | 1685.2× | 0.006 | IDH2 |
| cellular response to hypoxia | 2 | 48.5× | 0.006 | VHL, HIF1A |
| neural fold elevation formation | 1 | 1123.5× | 0.007 | HIF1A |
| positive regulation of hormone biosynthetic process | 1 | 1123.5× | 0.007 | HIF1A |
| obsolete positive regulation of nitric oxide metabolic process | 1 | 1123.5× | 0.007 | HIF1A |
| B-1 B cell homeostasis | 1 | 842.6× | 0.007 | HIF1A |
| regulation of transforming growth factor beta2 production | 1 | 842.6× | 0.007 | HIF1A |
| intestinal epithelial cell maturation | 1 | 842.6× | 0.007 | HIF1A |
| epithelial cell differentiation involved in mammary gland alveolus development | 1 | 842.6× | 0.007 | HIF1A |
| hypoxia-inducible factor-1alpha signaling pathway | 1 | 842.6× | 0.007 | HIF1A |
| NADPH regeneration | 1 | 674.1× | 0.008 | IDH1 |
| connective tissue replacement involved in inflammatory response wound healing | 1 | 561.7× | 0.009 | HIF1A |
| hemoglobin biosynthetic process | 1 | 561.7× | 0.009 | HIF1A |
| regulation of cellular response to hypoxia | 1 | 561.7× | 0.009 | VHL |
| glandular epithelial cell maturation | 1 | 481.5× | 0.009 | HIF1A |
| NADP+ biosynthetic process | 1 | 481.5× | 0.009 | IDH2 |
| vascular endothelial growth factor production | 1 | 481.5× | 0.009 | HIF1A |
| negative regulation of mesenchymal cell apoptotic process | 1 | 481.5× | 0.009 | HIF1A |
| negative regulation of gene expression | 2 | 27.6× | 0.009 | VHL, HIF1A |
Therapeutics
Drug target analysis
Approved (phase 4): 4 · Phase ≥3: 5 · Phased (≥1): 5 · Undrugged: 1
Druggability breadth: 5 of 6 evidence-associated genes (83%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| VHL | OSIMERTINIB |
| HIF1A | EMETINE |
| IDH1 | ENASIDENIB |
| IDH2 | ENASIDENIB |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| HIF1A | 255 | 4 |
| IDH1 | 10 | 4 |
| VHL | 7 | 4 |
| IDH2 | 7 | 4 |
| KDM4C | 4 | 3 |
| HIF1A-AS1 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| OSIMERTINIB | 4 | VHL |
| BRIGATINIB | 4 | VHL |
| CRIZOTINIB | 4 | VHL |
| ADAGRASIB | 4 | VHL |
| EMETINE | 4 | HIF1A |
| DOXORUBICIN | 4 | HIF1A |
| TOPOTECAN | 4 | HIF1A |
| LEVOSALBUTAMOL | 4 | HIF1A |
| LEVODOPA | 4 | HIF1A |
| DIENESTROL | 4 | HIF1A |
| PROGESTERONE | 4 | HIF1A |
| DICLOFENAC SODIUM | 4 | HIF1A |
| CLOTRIMAZOLE | 4 | HIF1A |
| BUMETANIDE | 4 | HIF1A |
| MORICIZINE | 4 | HIF1A |
| HYDROCORTISONE ACETATE | 4 | HIF1A |
| CHLORMADINONE ACETATE | 4 | HIF1A |
| DROPERIDOL | 4 | HIF1A |
| AMOXAPINE | 4 | HIF1A |
| TORSEMIDE | 4 | HIF1A |
| PREDNISOLONE ACETATE | 4 | HIF1A |
| BENOXINATE | 4 | HIF1A |
| NICARDIPINE HYDROCHLORIDE | 4 | HIF1A |
| PHENYLEPHRINE HYDROCHLORIDE | 4 | HIF1A |
| SULCONAZOLE NITRATE | 4 | HIF1A |
| HYDROXYZINE PAMOATE | 4 | HIF1A |
| PYRITHIONE ZINC | 4 | HIF1A |
| HYDROCORTISONE SODIUM SUCCINATE | 4 | HIF1A |
| DIFLORASONE DIACETATE | 4 | HIF1A |
| GUANABENZ ACETATE | 4 | HIF1A |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 4.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| VHL | 3,575 | Binding:3482, Functional:54, ADMET:39 |
| IDH1 | 488 | Binding:475, Functional:12, ADMET:1 |
| HIF1A | 427 | Binding:411, Functional:16 |
| KDM4C | 122 | Binding:120, Functional:2 |
| IDH2 | 84 | Binding:84 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| VHL | 2.3.2.B13 | |
| KDM4C | 1.14.11.27, 1.14.11.66, 1.14.11.69 | [histone H3]-dimethyl-L-lysine36 demethylase, [histone H3]-trimethyl-L-lysine9 demethylase, [histone H3]-trimethyl-L-lysine36 demethylase |
| IDH1 | 1.1.1.42 | isocitrate dehydrogenase (NADP+) |
| IDH2 | 1.1.1.42 | isocitrate dehydrogenase (NADP+) |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| VHL | 3,575 |
| KDM4C | 122 |
| HIF1A | 427 |
| IDH1 | 488 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 5; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| OSIMERTINIB | 4 | VHL |
| BRIGATINIB | 4 | VHL |
| CRIZOTINIB | 4 | VHL |
| ADAGRASIB | 4 | VHL |
| EMETINE | 4 | HIF1A |
| DOXORUBICIN | 4 | HIF1A |
| TOPOTECAN | 4 | HIF1A |
| LEVOSALBUTAMOL | 4 | HIF1A |
| LEVODOPA | 4 | HIF1A |
| DIENESTROL | 4 | HIF1A |
| PROGESTERONE | 4 | HIF1A |
| DICLOFENAC SODIUM | 4 | HIF1A |
| CLOTRIMAZOLE | 4 | HIF1A |
| BUMETANIDE | 4 | HIF1A |
| MORICIZINE | 4 | HIF1A |
| HYDROCORTISONE ACETATE | 4 | HIF1A |
| CHLORMADINONE ACETATE | 4 | HIF1A |
| DROPERIDOL | 4 | HIF1A |
| AMOXAPINE | 4 | HIF1A |
| TORSEMIDE | 4 | HIF1A |
| PREDNISOLONE ACETATE | 4 | HIF1A |
| BENOXINATE | 4 | HIF1A |
| NICARDIPINE HYDROCHLORIDE | 4 | HIF1A |
| PHENYLEPHRINE HYDROCHLORIDE | 4 | HIF1A |
| SULCONAZOLE NITRATE | 4 | HIF1A |
| HYDROXYZINE PAMOATE | 4 | HIF1A |
| PYRITHIONE ZINC | 4 | HIF1A |
| HYDROCORTISONE SODIUM SUCCINATE | 4 | HIF1A |
| DIFLORASONE DIACETATE | 4 | HIF1A |
| GUANABENZ ACETATE | 4 | HIF1A |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 4 | VHL, HIF1A, IDH1, IDH2 |
| B | Phased (≥1) drug, not yet approved | 1 | KDM4C |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 1 | HIF1A-AS1 |
Undrugged target profiles
1 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| HIF1A-AS1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 5.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 5 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT04134572 | Not specified | RECRUITING | Registry of Ollier Disease and Maffucci Syndrome |
| NCT06749366 | Not specified | RECRUITING | Uncovering Genes Behind Cartilage Tumors and Vascular Anomalies Using Genomic Sequencing |
| NCT04844697 | Not specified | COMPLETED | Resilience and Coping in a Rare Skeletal Disease Population to Face Coronavirus (COVID-19) Outbreak Distress: a Longitudinal Study |
| NCT06397443 | Not specified | COMPLETED | Ready to Sail: Evaluating Sailing’s Feasibility as Ergotherapy |
| NCT07379008 | Not specified | COMPLETED | Safety and Efficacy of Non-Setting Paste in Bone Defect Reconstruction |