Ornithine carbamoyltransferase deficiency
diseaseOn this page
Also known as OCT deficiencyornithine carbamoyltransferase deficiency diseaseornithine transcarbamylase deficiencyOTC deficiencyOTCD
Summary
Ornithine carbamoyltransferase deficiency (MONDO:0010703) is a disease caused by OTC (GenCC Definitive), with 6 cohort genes and 26 clinical trials. Top therapeutic interventions include carglumic acid, sodium acetate, and avalotcagene ontaparvovec.
At a glance
- Prevalence: 1-9 / 100 000 (Europe) [Orphanet-validated]
- Causal gene: OTC (GenCC Definitive)
- Cohort genes: 6
- ClinVar variants: 732
- Phenotypes (HPO): 29
- Clinical trials: 26
Clinical features
Epidemiology
Prevalence records
7 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Prevalence at birth | 1-9 / 100 000 | 1.77 | Worldwide | Validated |
| Point prevalence | 1-9 / 100 000 | 1 | Europe | Validated |
| Prevalence at birth | 1-9 / 100 000 | 1.4 | Italy | Validated |
| Prevalence at birth | 1-9 / 100 000 | 1.29 | Australia | Validated |
| Prevalence at birth | 1-9 / 100 000 | 1.6 | Finland | Validated |
| Prevalence at birth | 1-9 / 1 000 000 | 0.88 | Canada | Validated |
| Prevalence at birth | 1-9 / 100 000 | 1.77 | United States | Validated |
Signs & symptoms
Clinical features (HPO)
29 HPO clinical features (Orphanet curated; top 29 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0001399 | Hepatic failure | Very frequent (80-99%) |
| HP:0001744 | Splenomegaly | Very frequent (80-99%) |
| HP:0001943 | Hypoglycemia | Very frequent (80-99%) |
| HP:0001987 | Hyperammonemia | Very frequent (80-99%) |
| HP:0003355 | Aminoaciduria | Very frequent (80-99%) |
| HP:0001250 | Seizure | Frequent (30-79%) |
| HP:0001252 | Hypotonia | Frequent (30-79%) |
| HP:0001254 | Lethargy | Frequent (30-79%) |
| HP:0001259 | Coma | Frequent (30-79%) |
| HP:0001298 | Encephalopathy | Frequent (30-79%) |
| HP:0001950 | Respiratory alkalosis | Frequent (30-79%) |
| HP:0002033 | Poor suck | Frequent (30-79%) |
| HP:0002038 | Protein avoidance | Frequent (30-79%) |
| HP:0002039 | Anorexia | Frequent (30-79%) |
| HP:0002045 | Hypothermia | Frequent (30-79%) |
| HP:0002329 | Drowsiness | Frequent (30-79%) |
| HP:0002910 | Elevated circulating hepatic transaminase concentration | Frequent (30-79%) |
| HP:0003218 | Oroticaciduria | Frequent (30-79%) |
| HP:0003572 | Low plasma citrulline | Frequent (30-79%) |
| HP:0005961 | Hypoargininemia | Frequent (30-79%) |
| HP:0000716 | Depression | Occasional (5-29%) |
| HP:0000739 | Anxiety | Occasional (5-29%) |
| HP:0001328 | Specific learning disability | Occasional (5-29%) |
| HP:0001508 | Failure to thrive | Occasional (5-29%) |
| HP:0002572 | Episodic vomiting | Occasional (5-29%) |
| HP:0002908 | Conjugated hyperbilirubinemia | Occasional (5-29%) |
| HP:0003645 | Prolonged partial thromboplastin time | Occasional (5-29%) |
| HP:0007018 | Attention deficit hyperactivity disorder | Occasional (5-29%) |
| HP:0031258 | Delirium | Occasional (5-29%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | ornithine carbamoyltransferase deficiency |
| Mondo ID | MONDO:0010703 |
| EFO | EFO:0007409 |
| MeSH | D020163 |
| OMIM | 311250 |
| Orphanet | 664 |
| DOID | DOID:9271 |
| ICD-11 | 1822444026 |
| NCIT | C84957 |
| SNOMED CT | 80908008 |
| UMLS | C0268542 |
| MedGen | 75692 |
| GARD | 0008391 |
| MedDRA | 10052450 |
| Is cancer (heuristic) | no |
Also known as: OCT deficiency · ornithine carbamoyltransferase deficiency · ornithine carbamoyltransferase deficiency disease · ornithine transcarbamylase deficiency · OTC deficiency · OTCD
Data availability: 732 ClinVar variants · 31 ClinGen variant curations · 5 GenCC gene-disease records · 87 cell lines.
Disease family
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › inborn errors of metabolism › inborn disorder of amino acid and other organic acid metabolism › inborn disorder of amino acid metabolism › urea cycle disorder › urea cycle disorder or inherited hyperammonemia › ornithine carbamoyltransferase deficiency
Related subtypes (9): arginase deficiency, argininosuccinic aciduria, citrullinemia type I, carbamoyl phosphate synthetase I deficiency disease, hyperammonemia due to N-acetylglutamate synthase deficiency, ornithine translocase deficiency, hyperinsulinism-hyperammonemia syndrome, hyperammonemic encephalopathy due to carbonic anhydrase VA deficiency, citrin deficiency
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
600 retrieved; paginated sample, class counts are floors:
218 likely benign, 149 uncertain significance, 79 pathogenic, 69 likely pathogenic, 42 conflicting classifications of pathogenicity, 19 benign, 15 benign/likely benign, 9 pathogenic/likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 833473 | NC_000023.10:g.(?30326313)(41000684_?)del | ATP6AP2 | Pathogenic | criteria provided, single submitter |
| 1038367 | NM_000531.6(OTC):c.1020_1028del (p.Leu341_Thr343del) | OTC | Pathogenic | criteria provided, single submitter |
| 1066964 | NM_000531.6(OTC):c.505C>T (p.Pro169Ser) | OTC | Pathogenic | criteria provided, single submitter |
| 1072591 | NM_000531.6(OTC):c.429T>A (p.Tyr143Ter) | OTC | Pathogenic | criteria provided, single submitter |
| 1076888 | NC_000023.10:g.(?38210736)(38281703_?)del | OTC | Pathogenic | criteria provided, single submitter |
| 10986 | OTC, DEL | OTC | Pathogenic | no assertion criteria provided |
| 10987 | NM_000531.6(OTC):c.422G>A (p.Arg141Gln) | OTC | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 10988 | NM_000531.6(OTC):c.421C>T (p.Arg141Ter) | OTC | Pathogenic | criteria provided, single submitter |
| 10989 | NM_000531.6(OTC):c.332T>C (p.Leu111Pro) | OTC | Pathogenic | no assertion criteria provided |
| 10990 | NM_000531.6(OTC):c.646C>G (p.Gln216Glu) | OTC | Pathogenic | no assertion criteria provided |
| 10991 | NM_000531.6(OTC):c.460G>T (p.Glu154Ter) | OTC | Pathogenic | criteria provided, single submitter |
| 10992 | NM_000531.6(OTC):c.134T>C (p.Leu45Pro) | OTC | Pathogenic | no assertion criteria provided |
| 10993 | NM_000531.6(OTC):c.77G>A (p.Arg26Gln) | OTC | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 10996 | NM_000531.6(OTC):c.717+2T>C | OTC | Pathogenic | no assertion criteria provided |
| 10998 | NM_000531.6(OTC):c.387-2A>T | OTC | Pathogenic | criteria provided, single submitter |
| 10999 | NM_000531.6(OTC):c.829C>T (p.Arg277Trp) | OTC | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 11000 | NM_000531.6(OTC):c.674C>T (p.Pro225Leu) | OTC | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 11001 | NM_000531.6(OTC):c.259G>A (p.Glu87Lys) | OTC | Pathogenic | no assertion criteria provided |
| 11002 | NM_000531.6(OTC):c.148G>T (p.Gly50Ter) | OTC | Pathogenic | criteria provided, single submitter |
| 11003 | NM_000531.6(OTC):c.484G>A (p.Gly162Arg) | OTC | Pathogenic | no assertion criteria provided |
| 11007 | NM_000531.6(OTC):c.281G>C (p.Arg94Thr) | OTC | Pathogenic | no assertion criteria provided |
| 11008 | NM_000531.6(OTC):c.912G>T (p.Leu304Phe) | OTC | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 11009 | NM_000531.6(OTC):c.1033T>G (p.Tyr345Asp) | OTC | Pathogenic | no assertion criteria provided |
| 11010 | NM_000531.6(OTC):c.386G>A (p.Arg129His) | OTC | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 11011 | NM_000531.6(OTC):c.444G>C (p.Leu148Phe) | OTC | Pathogenic | no assertion criteria provided |
| 11012 | NM_000531.6(OTC):c.617T>G (p.Met206Arg) | OTC | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 11013 | NM_000531.6(OTC):c.118C>T (p.Arg40Cys) | OTC | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 11014 | NM_000531.6(OTC):c.119G>A (p.Arg40His) | OTC | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1354801 | NM_000531.6(OTC):c.614T>C (p.Met205Thr) | OTC | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1395169 | NM_000531.6(OTC):c.822del (p.Lys276fs) | OTC | Pathogenic | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 5 · Orphanet: 6 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| OTC | Definitive | X-linked | ornithine carbamoyltransferase deficiency | 5 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| OTC | Orphanet:664 | Ornithine transcarbamylase deficiency |
| ATP6AP2 | Orphanet:363654 | X-linked parkinsonism-spasticity syndrome |
| ATP6AP2 | Orphanet:93952 | X-linked intellectual disability, Hedera type |
| CYBB | Orphanet:319605 | X-linked mendelian susceptibility to mycobacterial diseases |
| CYBB | Orphanet:379 | Chronic granulomatous disease |
| PHKA1 | Orphanet:715 | Glycogen storage disease due to muscle phosphorylase kinase deficiency |
Cohort genes → proteins
6 cohort genes, 6 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 6 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| OTC | HGNC:8512 | ENSG00000036473 | P00480 | Ornithine transcarbamylase, mitochondrial | gencc,clinvar |
| SRPX | HGNC:11309 | ENSG00000101955 | P78539 | Sushi repeat-containing protein SRPX | clinvar |
| ATP6AP2 | HGNC:18305 | ENSG00000182220 | O75787 | Renin receptor | clinvar |
| CYBB | HGNC:2578 | ENSG00000165168 | P04839 | NADPH oxidase 2 | clinvar |
| EFHC2 | HGNC:26233 | ENSG00000183690 | Q5JST6 | EF-hand domain-containing family member C2 | clinvar |
| PHKA1 | HGNC:8925 | ENSG00000067177 | P46020 | Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| OTC | Ornithine transcarbamylase, mitochondrial | Catalyzes the second step of the urea cycle, the condensation of carbamoyl phosphate with L-ornithine to form L-citrulline. |
| SRPX | Sushi repeat-containing protein SRPX | May be involved in phagocytosis during disk shedding, cell adhesion to cells other than the pigment epithelium or signal transduction. |
| ATP6AP2 | Renin receptor | Multifunctional protein which functions as a renin, prorenin cellular receptor and is involved in the assembly of the lysosomal proton-transporting V-type ATPase (V-ATPase) and the acidification of the endo-lysosomal system. |
| CYBB | NADPH oxidase 2 | Catalytic subunit of the phagocyte NADPH oxidase complex that mediates the transfer of electrons from cytosolic NADPH to O2 to produce the superoxide anion (O2(-)). |
| EFHC2 | EF-hand domain-containing family member C2 | Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia axoneme, which is required for motile cilia beating. |
| PHKA1 | Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform | Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. |
Protein-family classification
Druggable: 3 · Difficult: 0 · Unknown: 3 · Druggable fraction: 0.5
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Complement | 1 | 44.7× | 0.067 |
| Enzyme (other) | 2 | 4.0× | 0.125 |
| Other/Unknown | 3 | 0.9× | 0.758 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| OTC | Enzyme (other) | yes | 2.1.3.3 | Orn/put_carbamltrans, Asp/Orn_carbamoylTrfase, Asp_carbamoyltransf_Asp/Orn-bd |
| SRPX | Complement | yes | Sushi_SCR_CCP_dom, HYR_dom, DUF4174 | |
| ATP6AP2 | Other/Unknown | no | Renin_rcpt, Renin_r_C, RENR_N | |
| CYBB | Other/Unknown | no | Cyt_b245_heavy_chain, FAD-bd_8, Fe_red_NAD-bd_6 | |
| EFHC2 | Other/Unknown | no | EF_hand_dom, DM10_dom, EF-hand-dom_pair | |
| PHKA1 | Enzyme (other) | yes | 2.7.11.19 | PHK_A/B_su, 6-hairpin_glycosidase_sf, GH15-like |
Expression context
Cohort genes with no expression data: 0.
6 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 6 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| jejunal mucosa | 1 |
| liver | 1 |
| right lobe of liver | 1 |
| omental fat pad | 1 |
| pericardium | 1 |
| peritoneum | 1 |
| germinal epithelium of ovary | 1 |
| tibia | 1 |
| visceral pleura | 1 |
| leukocyte | 1 |
| monocyte | 1 |
| mononuclear cell | 1 |
| bronchial epithelial cell | 1 |
| bronchus | 1 |
| epithelium of bronchus | 1 |
| biceps brachii | 1 |
| gastrocnemius | 1 |
| skeletal muscle tissue of rectus abdominis | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| OTC | 139 | tissue_specific | marker | jejunal mucosa, right lobe of liver, liver |
| SRPX | 274 | ubiquitous | marker | pericardium, peritoneum, omental fat pad |
| ATP6AP2 | 295 | ubiquitous | marker | visceral pleura, tibia, germinal epithelium of ovary |
| CYBB | 246 | broad | marker | monocyte, mononuclear cell, leukocyte |
| EFHC2 | 207 | broad | marker | bronchial epithelial cell, epithelium of bronchus, bronchus |
| PHKA1 | 227 | ubiquitous | marker | gastrocnemius, skeletal muscle tissue of rectus abdominis, biceps brachii |
Protein interactions among cohort
Intra-cohort edges: 1.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| CYBB | 4,117 |
| OTC | 2,513 |
| EFHC2 | 2,428 |
| ATP6AP2 | 2,236 |
| PHKA1 | 973 |
| SRPX | 790 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| CYBB | SRPX | string_interaction |
Structural data
PDB: 5 · AlphaFold-only: 1 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| ATP6AP2 | O75787 | 10 |
| PHKA1 | P46020 | 10 |
| CYBB | P04839 | 6 |
| OTC | P00480 | 4 |
| EFHC2 | Q5JST6 | 4 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| SRPX | P78539 | 85.37 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 19. Enrichment computed across 6 evidence-associated genes (4 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| OTC leader sequence variants cause OTC deficiency | 1 | 2855.0× | 0.003 | OTC |
| OTC main chain variants cause OTC deficiency | 1 | 2855.0× | 0.003 | OTC |
| Glycogen metabolism | 1 | 475.8× | 0.013 | PHKA1 |
| Cross-presentation of particulate exogenous antigens (phagosomes) | 1 | 356.9× | 0.013 | CYBB |
| Urea cycle | 1 | 219.6× | 0.015 | OTC |
| Glycogen breakdown (glycogenolysis) | 1 | 190.3× | 0.015 | PHKA1 |
| Regulation of MITF-M-dependent genes involved in lysosome biogenesis and autophagy | 1 | 167.9× | 0.015 | ATP6AP2 |
| Metabolism of Angiotensinogen to Angiotensins | 1 | 158.6× | 0.015 | ATP6AP2 |
| RHO GTPases Activate NADPH Oxidases | 1 | 114.2× | 0.018 | CYBB |
| Neutrophil degranulation | 2 | 11.5× | 0.020 | ATP6AP2, CYBB |
| ROS and RNS production in phagocytes | 1 | 84.0× | 0.020 | CYBB |
| Detoxification of Reactive Oxygen Species | 1 | 75.1× | 0.021 | CYBB |
| Mitochondrial protein import | 1 | 42.0× | 0.035 | OTC |
| VEGFA-VEGFR2 Pathway | 1 | 34.8× | 0.037 | CYBB |
| RAC2 GTPase cycle | 1 | 31.7× | 0.037 | CYBB |
| Metabolism of carbohydrates and carbohydrate derivatives | 1 | 30.1× | 0.037 | PHKA1 |
| RAC3 GTPase cycle | 1 | 29.7× | 0.037 | CYBB |
| RAC1 GTPase cycle | 1 | 15.3× | 0.067 | CYBB |
| Metabolism | 1 | 2.9× | 0.302 | PHKA1 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 6 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| L-ornithine catabolic process | 1 | 2808.7× | 0.007 | OTC |
| eye pigmentation | 1 | 2808.7× | 0.007 | ATP6AP2 |
| central nervous system maturation | 1 | 1404.3× | 0.007 | ATP6AP2 |
| obsolete L-arginine biosynthetic process via ornithine | 1 | 1404.3× | 0.007 | OTC |
| monoatomic anion homeostasis | 1 | 1404.3× | 0.007 | OTC |
| response to biotin | 1 | 1404.3× | 0.007 | OTC |
| rostrocaudal neural tube patterning | 1 | 936.2× | 0.007 | ATP6AP2 |
| L-citrulline biosynthetic process | 1 | 702.2× | 0.007 | OTC |
| positive regulation of glycogen catabolic process | 1 | 702.2× | 0.007 | PHKA1 |
| negative regulation of cell proliferation involved in contact inhibition | 1 | 702.2× | 0.007 | SRPX |
| hypoxia-inducible factor-1alpha signaling pathway | 1 | 702.2× | 0.007 | CYBB |
| cellular response to L-glutamine | 1 | 702.2× | 0.007 | CYBB |
| phagolysosome assembly | 1 | 561.7× | 0.008 | SRPX |
| positive regulation of transforming growth factor beta1 production | 1 | 468.1× | 0.009 | ATP6AP2 |
| ammonium homeostasis | 1 | 401.2× | 0.009 | OTC |
| midgut development | 1 | 351.1× | 0.010 | OTC |
| head morphogenesis | 1 | 351.1× | 0.010 | ATP6AP2 |
| response to xenobiotic stimulus | 2 | 23.0× | 0.010 | OTC, CYBB |
| response to angiotensin | 1 | 312.1× | 0.010 | CYBB |
| Golgi lumen acidification | 1 | 280.9× | 0.010 | ATP6AP2 |
| response to aldosterone | 1 | 280.9× | 0.010 | CYBB |
| positive regulation of extrinsic apoptotic signaling pathway in absence of ligand | 1 | 255.3× | 0.010 | SRPX |
| hydrogen peroxide biosynthetic process | 1 | 234.1× | 0.010 | CYBB |
| urea cycle | 1 | 216.1× | 0.010 | OTC |
| angiotensin maturation | 1 | 216.1× | 0.010 | ATP6AP2 |
| respiratory burst | 1 | 216.1× | 0.010 | CYBB |
| endosomal lumen acidification | 1 | 200.6× | 0.010 | ATP6AP2 |
| intracellular pH reduction | 1 | 200.6× | 0.010 | ATP6AP2 |
| cellular response to ethanol | 1 | 175.5× | 0.011 | CYBB |
| superoxide metabolic process | 1 | 165.2× | 0.011 | CYBB |
Therapeutics
Drugs indicated for this disease
0 approved, 1 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Sodium Acetate | Phase 3 (in late-stage trials) |
Drug target analysis
Approved (phase 4): 1 · Phase ≥3: 1 · Phased (≥1): 1 · Undrugged: 5
Druggability breadth: 3 of 6 evidence-associated genes (50%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| CYBB | NALOXONE |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| CYBB | 4 | 4 |
| OTC | 0 | 0 |
| SRPX | 0 | 0 |
| ATP6AP2 | 0 | 0 |
| EFHC2 | 0 | 0 |
| PHKA1 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| NALOXONE | 4 | CYBB |
| EBSELEN | 3 | CYBB |
| SETANAXIB | 2 | CYBB |
| ISUZINAXIB | 2 | CYBB |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 2.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| CYBB | 56 | Binding:54, Unclassified:1, Functional:1 |
| PHKA1 | 20 | Binding:20 |
| OTC | 3 | Binding:3 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| OTC | 2.1.3.3 | ornithine carbamoyltransferase |
| PHKA1 | 2.7.11.19 | phosphorylase kinase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 6; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
4 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| NALOXONE | 4 | CYBB |
| EBSELEN | 3 | CYBB |
| SETANAXIB | 2 | CYBB |
| ISUZINAXIB | 2 | CYBB |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 1 | CYBB |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 2 | OTC, PHKA1 |
| D | Druggable family + AlphaFold only, no drug | 1 | SRPX |
| E | Difficult family or no structure, no drug | 2 | ATP6AP2, EFHC2 |
Undrugged target profiles
5 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| SRPX | 0 | CYBB |
| OTC | 3 | — |
| ATP6AP2 | 0 | — |
| EFHC2 | 0 | — |
| PHKA1 | 20 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 26.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 14 |
| PHASE2 | 4 |
| PHASE1/PHASE2 | 4 |
| PHASE1 | 3 |
| PHASE3 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT05345171 | PHASE3 | ACTIVE_NOT_RECRUITING | Clinical Study of DTX301 AAV-Mediated Gene Transfer for Ornithine Transcarbamylase (OTC) Deficiency |
| NCT05092685 | PHASE1/PHASE2 | RECRUITING | Halting Ornithine Transcarbamylase Deficiency With Recombinant AAV in ChildrEn |
| NCT06255782 | PHASE1/PHASE2 | RECRUITING | An Open-label Study to Investigate ECUR-506 in Male Babies Less Than 9 Months of Age With Neonatal Onset OTC Deficiency |
| NCT06488313 | PHASE2 | RECRUITING | A Study to Evaluate the Pharmacodynamics and Safety of ARCT-810 in Participants With OTCD |
| NCT00718627 | PHASE2 | COMPLETED | Human Heterologous Liver Cells for Infusion in Children With Urea Cycle Disorders |
| NCT01599286 | PHASE2 | COMPLETED | Short-Term Outcome of N-Carbamylglutamate in the Treatment of Acute Hyperammonemia |
| NCT02991144 | PHASE1/PHASE2 | COMPLETED | Safety and Dose-Finding Study of DTX301 (scAAV8OTC) in Adults With Late-Onset Ornithine Transcarbamylase (OTC) Deficiency |
| NCT03767270 | PHASE1/PHASE2 | WITHDRAWN | Safety, Tolerability and PK/PD Evaluation of Intravenous Administration of MRT5201 in Patients With OTC Deficiency |
| NCT05526066 | PHASE2 | TERMINATED | Study for Adolescents and Adults With Ornithine Transcarbamylase Deficiency to Evaluate Safety and Tolerability of ARCT-810 |
| NCT06247670 | PHASE1 | ACTIVE_NOT_RECRUITING | Study of CMP-CPS-001 in Healthy Volunteers and Participants With Abnormal Heterozygous OTC Genotype |
| NCT04416126 | PHASE1 | COMPLETED | Safety, Tolerability and Pharmacokinetics of ARCT-810 in Healthy Adult Subjects |
| NCT04442347 | PHASE1 | COMPLETED | Phase 1b Study to Assess Safety, Tolerability, and Pharmacokinetics of ARCT-810 in Stable Adult Subjects With Ornithine Transcarbamylase Deficiency |
| NCT03636438 | Not specified | ACTIVE_NOT_RECRUITING | Long Term Follow Up to Evaluate DTX301 in Adults With Late-Onset OTC Deficiency |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT04612764 | Not specified | ACTIVE_NOT_RECRUITING | Liver Disease in Urea Cycle Disorders |
| NCT04908319 | Not specified | RECRUITING | Hepatic Histopathology in Urea Cycle Disorders |
| NCT06805695 | Not specified | RECRUITING | Long-term Follow-up (LTFU) Study of Participants in Any iECURE Protocol Using an Investigational Product (IP) |
| NCT00472732 | Not specified | COMPLETED | Neurologic Injuries in Adults With Urea Cycle Disorders |
| NCT01421888 | Not specified | TERMINATED | The NIH UNI Study: Urea Cycle Disorders, Nutrition and Immunity |
| NCT01569568 | Not specified | COMPLETED | Investigation of Brain Nitrogen in Partial Ornithine Transcarbamylase Deficiency (OTCD) Using 1 H MRS, DTI, and fMRI |
| NCT04248062 | Not specified | COMPLETED | Patient and Observer Reported Outcome Measurements in Inborn Errors of Metabolism |
| NCT04269122 | Not specified | COMPLETED | A Study to Assess Plasma Ammonia Time-Normalized Area Under the Curve and Rate of Ureagenesis in Healthy Adult Subjects |
| NCT04717453 | Not specified | TERMINATED | Study to Characterize Rate of Ureagenesis in Patients With Ornithine Transcarbamylase (OTC) Deficiency |
| NCT04909346 | Not specified | TERMINATED | Adeno-Associated Virus (AAV) Antibody Study in Subjects OTC Deficiency, GSDIa, and Wilson Disease |
| NCT05687474 | Not specified | COMPLETED | Baby Detect : Genomic Newborn Screening |
| NCT05910151 | Not specified | UNKNOWN | Selective Screening of Children for Hereditary Metabolic Diseases by Tandem Mass Spectrometry in Kazakhstan |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| CARGLUMIC ACID | 4 | 1 |
| SODIUM ACETATE | 4 | 1 |
| AVALOTCAGENE ONTAPARVOVEC | 1 | 2 |
Related Atlas pages
- Cohort genes: OTC, SRPX, ATP6AP2, CYBB, EFHC2, PHKA1
- Drugs: Carglumic Acid, Sodium Acetate