Summary
Osteoarthritis, knee (MONDO:0005416) is a disease with 31 cohort genes (760 GWAS associations across 60 studies) and 987 clinical trials. Top therapeutic interventions include celecoxib, hyaluronic acid, and ketorolac.
At a glance
- Cohort genes: 31
- GWAS associations: 760
- Clinical trials: 987
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|
| Canonical name | osteoarthritis, knee |
| Mondo ID | MONDO:0005416 |
| EFO | EFO:0004616 |
| MeSH | D020370 |
| UMLS | C0409959 |
| MedGen | 98371 |
| Is cancer (heuristic) | no |
Data availability: 760 GWAS associations (60 studies).
Disease family
Classification path: disease › human disease › disease by body system or component › musculoskeletal system disorder › skeletal system disorder › bone disorder › bone inflammation disease › arthritic joint disease › osteoarthritis › osteoarthritis, knee
Related subtypes (4): osteoarthritis, hip, osteoarthritis, spine, osteoarthritis, toe, osteoarthritis, hand
Genetics & variants
GWAS landscape
760 GWAS associations across 60 studies. Top hits map to 26 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|
| rs13021737 | 1e-169 | LINC01875 - TMEM18 | A | |
| rs62106258 | 2e-92 | LINC01865 | T | |
| rs13107325 | 2e-48 | SLC39A8 | T | |
| rs224333 | 6e-42 | GDF5 | A | 0.94 |
| rs3814883 | 1e-40 | TAOK2 | T | |
| rs9930333 | 8e-38 | FTO | T | 0.95 |
| rs889398 | 2e-35 | CYB5B - NFAT5 | T | |
| rs11075989 | 1e-34 | FTO | T | 1.05 |
| rs11731421 | 2e-32 | TACC3 - FGFR3 | A | 1.05 |
| rs2521349 | 2e-30 | MAP2K6 | A | 1.07 |
| rs4606747 | 3e-30 | SRR | T | 0.95 |
| rs1851610 | 4e-28 | TGFA | T | 1.04 |
| rs6060401 | 5e-28 | UQCC1 - GDF5-AS1 | T | 1.05 |
| chr20:35431781 | 6e-28 | | C | 0.08 |
| rs3755384 | 9e-27 | TGFA | A | 1.07 |
| rs12310519 | 1e-25 | SOX5 | T | 1.06 |
| rs12509303 | 3e-25 | TACC3 - FGFR3 | T | 1.06 |
| rs687339 | 7e-25 | RPL31P23 - PCCB | T | |
| rs1421085 | 9e-25 | FTO | T | 0.94 |
| rs429358 | 1e-24 | APOE | T | 1.06 |
| rs2302417 | 4e-24 | ITIH1 | A | 1.06 |
| rs143384 | 1e-23 | GDF5 | A | 1.07 |
| rs28685250 | 2e-23 | ECM1P2 - U6 | T | 1.06 |
| rs11724531 | 3e-23 | TACC3 - FGFR3 | A | 0.93 |
| rs10131337 | 9e-23 | PAX9 | T | 0.95 |
| rs775208 | 2e-22 | AARS1 | T | |
| rs7217226 | 2e-22 | SMG6 | T | |
| rs6060355 | 2e-22 | FAM83C - UQCC1 | A | 0.94 |
| rs3755380 | 3e-22 | TGFA | C | 1.04 |
| rs12195339 | 2e-21 | SUPT3H | T | 0.94 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|
| GCST90566799 | Hatzikotoulas K | 2025 | 201,533 | 901,637 | Translational genomics of osteoarthritis in 1,962,069 individuals. |
| GCST90566800 | Hatzikotoulas K | 2025 | 161,228 | 965,985 | Translational genomics of osteoarthritis in 1,962,069 individuals. |
| GCST90297779 | Hollis B | 2023 | 90,888 | 263,673 | Lifetime risk and genetic predisposition to post-traumatic OA of the knee in the UK Biobank. |
| GCST90034521 | Boer CG | 2021 | 88,842 | 397,208 | Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations. |
| GCST90566804 | Hatzikotoulas K | 2025 | 76,604 | 771,801 | Translational genomics of osteoarthritis in 1,962,069 individuals. |
| GCST90271770 | Zhang L | 2023 | 62,497 | 333,557 | A sex- and site-specific relationship between body mass index and osteoarthritis: evidence from observational and genetic analyses. |
| GCST90034523 | Boer CG | 2021 | 61,588 | 330,161 | Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations. |
| GCST90474022 | UK Biobank Whole-Genome Sequencing Consortium | 2025 | 44,190 | 414,250 | Whole-genome sequencing of 490,640 UK Biobank participants. |
| GCST90034526 | Boer CG | 2021 | 40,887 | 327,689 | Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations. |
| GCST90061025 | Boer CG | 2021 | 40,887 | 327,689 | Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|
| Tier 1: coding | 2 |
| Tier 2: splice/UTR | 3 |
| Tier 3: regulatory | 5 |
| Tier 4: intronic/intergenic | 40 |
MAF distribution
| Bucket | Variants |
|---|
| common (>=0.05) | 48 |
| low_freq (0.01-0.05) | 0 |
| rare (<0.01) | 0 |
| unknown | 2 |
Functional consequences
| Consequence | Count |
|---|
| intron_variant | 30 |
| intergenic_variant | 7 |
| regulatory_region_variant | 4 |
| missense_variant | 2 |
| unknown | 2 |
| 3_prime_UTR_variant | 2 |
| synonymous_variant | 1 |
| TF_binding_site_variant | 1 |
| 5_prime_UTR_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|
| rs9922708 | 16 | 53797234 | C>T | 0.05 | intron_variant | FTO | | Tier 4: intronic/intergenic |
| rs13021737 | 2 | 632348 | A>C,G,T | 0.05 | intergenic_variant | LINC01875 - TMEM18 | 1e-169 | Tier 4: intronic/intergenic |
| rs62106258 | 2 | 417167 | T>C | 0.05 | intron_variant | LINC01865 | 2e-92 | Tier 4: intronic/intergenic |
| rs13107325 | 4 | 102267552 | C>A,T | 0.05 | missense_variant | SLC39A8 | 2e-48 | Tier 1: coding |
| rs224333 | 20 | 35436182 | A>G | 0.383 | intron_variant | GDF5 | 6e-42 | Tier 4: intronic/intergenic |
| rs3814883 | 16 | 29983601 | C>T | 0.05 | synonymous_variant | TAOK2 | 1e-40 | Tier 4: intronic/intergenic |
| rs9930333 | 16 | 53766065 | T>C,G | 0.432 | intron_variant | FTO | 8e-38 | Tier 4: intronic/intergenic |
| rs889398 | 16 | 69522812 | C>T | 0.05 | regulatory_region_variant | CYB5B - NFAT5 | 2e-35 | Tier 3: regulatory |
| rs11075989 | 16 | 53785965 | C>A,G,T | 0.406 | intron_variant | FTO | 1e-34 | Tier 4: intronic/intergenic |
| rs11731421 | 4 | 1747433 | G>A,C | 0.366 | regulatory_region_variant | TACC3 - FGFR3 | 2e-32 | Tier 3: regulatory |
| rs2521349 | 17 | 69507360 | G>A,T | 0.387 | intron_variant | MAP2K6 | 2e-30 | Tier 4: intronic/intergenic |
| rs4606747 | 17 | 2306577 | C>G,T | 0.379 | intron_variant | SRR | 3e-30 | Tier 4: intronic/intergenic |
| rs1851610 | 2 | 70472027 | T>A,C,G | 0.489 | intron_variant | TGFA | 4e-28 | Tier 4: intronic/intergenic |
| rs6060401 | 20 | 35417411 | C>A,G,T | 0.386 | intergenic_variant | UQCC1 - GDF5-AS1 | 5e-28 | Tier 4: intronic/intergenic |
| chr20:35431781 | | | | | | | 6e-28 | Tier 4: intronic/intergenic |
| rs3755384 | 2 | 70477379 | A>C,G | 0.479 | intron_variant | TGFA | 9e-27 | Tier 4: intronic/intergenic |
| rs12310519 | 12 | 23822285 | C>T | 0.157 | intron_variant | SOX5 | 1e-25 | Tier 4: intronic/intergenic |
| rs12509303 | 4 | 1763447 | T>C | 0.154 | regulatory_region_variant | TACC3 - FGFR3 | 3e-25 | Tier 3: regulatory |
| rs687339 | 3 | 136213517 | C>T | 0.05 | TF_binding_site_variant | RPL31P23 - PCCB | 7e-25 | Tier 3: regulatory |
| rs1421085 | 16 | 53767042 | T>C | 0.411 | intron_variant | FTO | 9e-25 | Tier 4: intronic/intergenic |
| rs429358 | 19 | 44908684 | T>C | 0.156 | missense_variant | APOE | 1e-24 | Tier 1: coding |
| rs2302417 | 3 | 52780240 | T>A,G | 0.489 | intron_variant | ITIH1 | 4e-24 | Tier 4: intronic/intergenic |
| rs143384 | 20 | 35437976 | G>A,C,T | 0.409 | 5_prime_UTR_variant | GDF5 | 1e-23 | Tier 2: splice/UTR |
| rs28685250 | 4 | 13004948 | T>C | 0.381 | intergenic_variant | ECM1P2 - U6 | 2e-23 | Tier 4: intronic/intergenic |
| rs11724531 | 4 | 1751697 | A>G | 0.206 | regulatory_region_variant | TACC3 - FGFR3 | 3e-23 | Tier 3: regulatory |
| rs10131337 | 14 | 36675311 | C>A,T | 0.252 | intron_variant | PAX9 | 9e-23 | Tier 4: intronic/intergenic |
| rs775208 | 16 | 70282008 | T>C | 0.05 | intron_variant | AARS1 | 2e-22 | Tier 4: intronic/intergenic |
| rs7217226 | 17 | 2232771 | T>G | 0.05 | intron_variant | SMG6 | 2e-22 | Tier 4: intronic/intergenic |
| rs6060355 | 20 | 35302258 | G>A | 0.381 | intergenic_variant | FAM83C - UQCC1 | 2e-22 | Tier 4: intronic/intergenic |
| rs3755380 | 2 | 70491888 | C>A,G,T | 0.45 | intron_variant | TGFA | 3e-22 | Tier 4: intronic/intergenic |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 31 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 1
Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)
| Gene | HGNC | Evidence routes |
|---|
| SMAD3 | SMAD3 | GWAS, Orphanet |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|
| BTNL2 | Orphanet:797 | Sarcoidosis |
| GLT8D1 | Orphanet:803 | Amyotrophic lateral sclerosis |
| FRMD4A | Orphanet:466688 | Severe intellectual disability-corpus callosum agenesis-facial dysmorphism-cerebellar ataxia syndrome |
| GLIS3 | Orphanet:79118 | Neonatal diabetes-congenital hypothyroidism-congenital glaucoma-hepatic fibrosis-polycystic kidneys syndrome |
| CRBN | Orphanet:88616 | Autosomal recessive non-syndromic intellectual disability |
| GDF5 | Orphanet:2098 | Acromesomelic dysplasia, Grebe type |
| GDF5 | Orphanet:2639 | Fibular aplasia-complex brachydactyly syndrome |
| GDF5 | Orphanet:3237 | Multiple synostoses syndrome |
| GDF5 | Orphanet:3250 | Proximal symphalangism |
| GDF5 | Orphanet:63442 | Angel-shaped phalango-epiphyseal dysplasia |
| GDF5 | Orphanet:93384 | Brachydactyly type C |
| GDF5 | Orphanet:93388 | Brachydactyly type A1 |
| GDF5 | Orphanet:93396 | Brachydactyly type A2 |
| GDF5 | Orphanet:968 | Acromesomelic dysplasia, Hunter-Thompson type |
| HLA-DQB1 | Orphanet:2073 | Narcolepsy type 1 |
| HLA-DQB1 | Orphanet:477738 | Pediatric multiple sclerosis |
| HLA-DQB1 | Orphanet:703 | Bullous pemphigoid |
| HLA-DQB1 | Orphanet:83465 | Narcolepsy type 2 |
| HLA-DQB1 | Orphanet:930 | Idiopathic achalasia |
| LTBP1 | Orphanet:90349 | Autosomal recessive cutis laxa type 1 |
| SMAD3 | Orphanet:284984 | Aneurysm-osteoarthritis syndrome |
| SMAD3 | Orphanet:60030 | Loeys-Dietz syndrome |
| SMAD3 | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| PAX7 | Orphanet:99756 | Alveolar rhabdomyosarcoma |
| PLA2G4A | Orphanet:468635 | Cryptogenic multifocal ulcerous stenosing enteritis |
| PLA2G4A | Orphanet:477787 | Cytosolic phospholipase-A2 alpha deficiency associated bleeding disorder |
| PLEC | Orphanet:1114 | Aplasia cutis congenita |
| PLEC | Orphanet:158684 | Epidermolysis bullosa simplex with pyloric atresia |
| PLEC | Orphanet:254361 | Plectin-related limb-girdle muscular dystrophy R17 |
| PLEC | Orphanet:257 | Epidermolysis bullosa simplex with muscular dystrophy |
| PLEC | Orphanet:79401 | PLEC-related intermediate epidermolysis bullosa simplex without extracutaneous involvement |
Cohort genes → proteins
31 cohort genes, 30 distinct canonical proteins.
Evidence partition
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|
| BTNL2 | HGNC:1142 | ENSG00000204290 | Q9UIR0 | Butyrophilin-like protein 2 | gwas |
| SUPT3H | HGNC:11466 | ENSG00000196284 | O75486 | Transcription initiation protein SPT3 homolog | gwas |
| PARD3B | HGNC:14446 | ENSG00000116117 | Q8TEW8 | Partitioning defective 3 homolog B | gwas |
| TAS1R2 | HGNC:14905 | ENSG00000179002 | Q8TE23 | Taste receptor type 1 member 2 | gwas |
| EPPK1 | HGNC:15577 | ENSG00000261150 | P58107 | Epiplakin | gwas |
| NOD1 | HGNC:16390 | ENSG00000106100 | Q9Y239 | Nucleotide-binding oligomerization domain-containing protein 1 | gwas |
| WWP2 | HGNC:16804 | ENSG00000198373 | O00308 | NEDD4-like E3 ubiquitin-protein ligase WWP2 | gwas |
| ANKRD6 | HGNC:17280 | ENSG00000135299 | Q9Y2G4 | Ankyrin repeat domain-containing protein 6 | gwas |
| LRRN1 | HGNC:20980 | ENSG00000175928 | Q6UXK5 | Leucine-rich repeat neuronal protein 1 | gwas |
| SBNO1 | HGNC:22973 | ENSG00000139697 | A3KN83 | Protein strawberry notch homolog 1 | gwas |
| CNKSR3 | HGNC:23034 | ENSG00000153721 | Q6P9H4 | Connector enhancer of kinase suppressor of ras 3 | gwas |
| GLT8D1 | HGNC:24870 | ENSG00000016864 | Q68CQ7 | Glycosyltransferase 8 domain-containing protein 1 | gwas |
| FRMD4A | HGNC:25491 | ENSG00000151474 | Q9P2Q2 | FERM domain-containing protein 4A | gwas |
| DDX10 | HGNC:2735 | ENSG00000178105 | Q13206 | Probable ATP-dependent RNA helicase DDX10 | gwas |
| GLIS3 | HGNC:28510 | ENSG00000107249 | Q8NEA6 | Zinc finger protein GLIS3 | gwas |
| DYNC1I1 | HGNC:2963 | ENSG00000158560 | O14576 | Cytoplasmic dynein 1 intermediate chain 1 | gwas |
| CRBN | HGNC:30185 | ENSG00000113851 | Q96SW2 | Protein cereblon | gwas |
| GALNT18 | HGNC:30488 | ENSG00000110328 | Q6P9A2 | Polypeptide N-acetylgalactosaminyltransferase 18 | gwas |
| ZBED5 | HGNC:30803 | ENSG00000236287 | Q49AG3 | Zinc finger BED domain-containing protein 5 | gwas |
| C11orf87 | HGNC:33788 | ENSG00000185742 | Q6NUJ2 | Uncharacterized protein C11orf87 | gwas |
| LSP1P3 | HGNC:39718 | ENSG00000162685 | | LSP1 pseudogene 3 | gwas |
| GDF5 | HGNC:4220 | ENSG00000125965 | P43026 | Growth/differentiation factor 5 | gwas |
| RNF32-DT | HGNC:48971 | ENSG00000182648 | Q8NI28 | Putative transmembrane protein RNF32-DT | gwas |
| HLA-DQA2 | HGNC:4943 | ENSG00000237541 | P01906 | HLA class II histocompatibility antigen, DQ alpha 2 chain | gwas |
| HLA-DQB1 | HGNC:4944 | ENSG00000179344 | P01920 | HLA class II histocompatibility antigen, DQ beta 1 chain | gwas |
| LTBP1 | HGNC:6714 | ENSG00000049323 | Q14766 | Latent-transforming growth factor beta-binding protein 1 | gwas |
| SMAD3 | HGNC:6769 | ENSG00000166949 | P84022 | SMAD family member 3 | gwas |
| PAX7 | HGNC:8621 | ENSG00000009709 | P23759 | Paired box protein Pax-7 | gwas |
| PLA2G4A | HGNC:9035 | ENSG00000116711 | P47712 | Cytosolic phospholipase A2 | gwas |
| PLEC | HGNC:9069 | ENSG00000178209 | Q15149 | Plectin | gwas |
| PTGS2 | HGNC:9605 | ENSG00000073756 | P35354 | Prostaglandin G/H synthase 2 | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|
| BTNL2 | Butyrophilin-like protein 2 | Negative regulator of T-cell proliferation. |
| SUPT3H | Transcription initiation protein SPT3 homolog | Probable transcriptional activator. |
| PARD3B | Partitioning defective 3 homolog B | Putative adapter protein involved in asymmetrical cell division and cell polarization processes. |
| TAS1R2 | Taste receptor type 1 member 2 | Putative taste receptor. |
| EPPK1 | Epiplakin | Cytoskeletal linker protein that connects to intermediate filaments and controls their reorganization in response to stress. |
| NOD1 | Nucleotide-binding oligomerization domain-containing protein 1 | Pattern recognition receptor (PRR) that detects bacterial peptidoglycan fragments and other danger signals and thus participates in both innate and adaptive immune responses. |
| WWP2 | NEDD4-like E3 ubiquitin-protein ligase WWP2 | E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. |
| ANKRD6 | Ankyrin repeat domain-containing protein 6 | Recruits CKI-epsilon to the beta-catenin degradation complex that consists of AXN1 or AXN2 and GSK3-beta and allows efficient phosphorylation of beta-catenin, thereby inhibiting beta-catenin/Tcf signals. |
| SBNO1 | Protein strawberry notch homolog 1 | Plays a crucial role in the regulation of neural stem cells (NSCs) proliferation. |
| CNKSR3 | Connector enhancer of kinase suppressor of ras 3 | Involved in transepithelial sodium transport. |
| GLT8D1 | Glycosyltransferase 8 domain-containing protein 1 | In vitro, catalyzes the transfer of a galactose residue from UDP-galactose onto GalNAc and GlcNAc structures. |
| FRMD4A | FERM domain-containing protein 4A | Scaffolding protein that regulates epithelial cell polarity by connecting ARF6 activation with the PAR3 complex. |
| DDX10 | Probable ATP-dependent RNA helicase DDX10 | Putative ATP-dependent RNA helicase that plays various role in innate immunity or inflammation. |
| GLIS3 | Zinc finger protein GLIS3 | Acts both as a repressor and an activator of transcription. |
| DYNC1I1 | Cytoplasmic dynein 1 intermediate chain 1 | Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. |
| CRBN | Protein cereblon | Substrate recognition component of a DCX (DDB1-CUL4-X-box) E3 protein ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as MEIS2, ILF2 or GLUL. |
| GALNT18 | Polypeptide N-acetylgalactosaminyltransferase 18 | Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine (GalNAc) residue from UDP-GalNAc to a serine or threonine residue on the protein receptor. |
| GDF5 | Growth/differentiation factor 5 | Growth factor involved in bone and cartilage formation. |
| HLA-DQA2 | HLA class II histocompatibility antigen, DQ alpha 2 chain | Binds peptides derived from antigens that access the endocytic route of antigen presenting cells (APC) and presents them on the cell surface for recognition by the CD4 T-cells. |
| HLA-DQB1 | HLA class II histocompatibility antigen, DQ beta 1 chain | Binds peptides derived from antigens that access the endocytic route of antigen presenting cells (APC) and presents them on the cell surface for recognition by the CD4 T-cells. |
| LTBP1 | Latent-transforming growth factor beta-binding protein 1 | Key regulator of transforming growth factor beta (TGFB1, TGFB2 and TGFB3) that controls TGF-beta activation by maintaining it in a latent state during storage in extracellular space. |
| SMAD3 | SMAD family member 3 | Receptor-regulated SMAD (R-SMAD) that is an intracellular signal transducer and transcriptional modulator activated by TGF-beta (transforming growth factor) and activin type 1 receptor kinases. |
| PAX7 | Paired box protein Pax-7 | Transcription factor that is involved in the regulation of muscle stem cells proliferation, playing a role in myogenesis and muscle regeneration. |
| PLA2G4A | Cytosolic phospholipase A2 | Has primarily calcium-dependent phospholipase and lysophospholipase activities, with a major role in membrane lipid remodeling and biosynthesis of lipid mediators of the inflammatory response. |
| PLEC | Plectin | Interlinks intermediate filaments with microtubules and microfilaments and anchors intermediate filaments to desmosomes or hemidesmosomes. |
| PTGS2 | Prostaglandin G/H synthase 2 | Dual cyclooxygenase and peroxidase in the biosynthesis pathway of prostanoids, a class of C20 oxylipins mainly derived from arachidonate ((5Z,8Z,11Z,14Z)-eicosatetraenoate, AA, C20:4(n-6)), with a particular role in the inflammatory respon… |
Protein-family classification
Druggable: 8 · Difficult: 9 · Unknown: 14 · Druggable fraction: 0.26
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|
| Scaffold/PPI | 6 | 3.4× | 0.047 |
| Antibody/Immunoglobulin | 4 | 3.8× | 0.062 |
| Enzyme (other) | 3 | 1.2× | 0.891 |
| Transcription factor | 3 | 0.8× | 0.891 |
| GPCR | 1 | 0.8× | 0.891 |
| Other/Unknown | 14 | 0.8× | 0.915 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|
| BTNL2 | Antibody/Immunoglobulin | yes | | Ig_C1-set, Ig_sub, Ig-like_dom |
| SUPT3H | Other/Unknown | no | | TFIID_TAF13, Histone-fold |
| PARD3B | Scaffold/PPI | no | | PDZ, Par3/HAL_N, PDZ_sf |
| TAS1R2 | GPCR | yes | | GPCR_3_Ca_sens_rcpt-rel, GPCR_3, ANF_lig-bd_rcpt |
| EPPK1 | Other/Unknown | no | | Plectin_repeat, Plakin_repeat_sf, Plakin |
| NOD1 | Other/Unknown | no | | CARD, Leu-rich_rpt, NACHT_NTPase |
| WWP2 | Scaffold/PPI | no | 2.3.2.26 | C2_dom, HECT_dom, WW_dom |
| ANKRD6 | Scaffold/PPI | no | | Ankyrin_rpt, Ankyrin_rpt-contain_sf |
| LRRN1 | Antibody/Immunoglobulin | yes | | Cys-rich_flank_reg_C, Leu-rich_rpt, Leu-rich_rpt_typical-subtyp |
| SBNO1 | Other/Unknown | no | | SNO, SBNO_Helicase_C_dom, P-loop_NTPase |
| CNKSR3 | Scaffold/PPI | no | | PDZ, SAM, CNK2/3_dom |
| GLT8D1 | Other/Unknown | no | | Glyco_trans_8, Nucleotide-diphossugar_trans, Glycosyltrans_8_dom-fam |
| FRMD4A | Other/Unknown | no | | FERM_domain, PH-like_dom_sf, FERM/acyl-CoA-bd_prot_sf |
| DDX10 | Other/Unknown | no | | RNA-helicase_DEAD-box_CS, Helicase_C-like, DEAD/DEAH_box_helicase_dom |
| GLIS3 | Transcription factor | no | | Znf_C2H2_type, Znf_C2H2_sf, GLI-like |
| DYNC1I1 | Scaffold/PPI | no | | WD40_rpt, WD40/YVTN_repeat-like_dom_sf, DYNC1I1/DYNC1I2 |
| CRBN | Other/Unknown | no | | Lon_prtase_N, Yippee/Mis18/Cereblon, PUA-like_sf |
| GALNT18 | Enzyme (other) | yes | 2.4.1.41 | Ricin_B_lectin, Glyco_trans_2-like, Nucleotide-diphossugar_trans |
| ZBED5 | Transcription factor | no | | Znf_BED, RNaseH-like_sf |
| C11orf87 | Other/Unknown | no | | C11orf87 |
| LSP1P3 | Other/Unknown | no | | |
| GDF5 | Other/Unknown | no | | TGF-b_propeptide, TGF-b_C, TGF-beta-like |
| RNF32-DT | Other/Unknown | no | | |
| HLA-DQA2 | Antibody/Immunoglobulin | yes | | MHC_II_a_N, Ig/MHC_CS, Ig_C1-set |
| HLA-DQB1 | Antibody/Immunoglobulin | yes | | MHC_II_b_N, Ig/MHC_CS, Ig_C1-set |
| LTBP1 | Other/Unknown | no | | EGF-type_Asp/Asn_hydroxyl_site, EGF, EGF-like_Ca-bd_dom |
| SMAD3 | Other/Unknown | no | | SMAD_dom, MAD_homology1_Dwarfin-type, SMAD_FHA_dom_sf |
| PAX7 | Transcription factor | no | | HD, Paired_dom, OAR_dom |
| PLA2G4A | Enzyme (other) | yes | 3.1.1.4 | C2_dom, LysoPLipase_cat_dom, Acyl_Trfase/lysoPLipase |
| PLEC | Scaffold/PPI | no | | Plectin_repeat, SH3_domain, Actinin_actin-bd_CS |
| PTGS2 | Enzyme (other) | yes | 1.14.99.1 | EGF, Haem_peroxidase_sf, Haem_peroxidase_animal |
Expression context
Cohort genes with no expression data: 0.
26 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|
| narrow (1-5 tissues) | 1 |
| moderate (6-20) | 0 |
| broad (>20) | 30 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|
| sural nerve | 7 |
| ventricular zone | 4 |
| male germ line stem cell (sensu Vertebrata) in testis | 4 |
| cartilage tissue | 4 |
| ganglionic eminence | 3 |
| primordial germ cell in gonad | 2 |
| skin of hip | 2 |
| tendon of biceps brachii | 2 |
| tibia | 2 |
| blood vessel layer | 2 |
| right uterine tube | 2 |
| oocyte | 2 |
| calcaneal tendon | 2 |
| cortical plate | 2 |
| endothelial cell | 2 |
| Brodmann (1909) area 23 | 2 |
| right lung | 2 |
| upper lobe of left lung | 2 |
| hindlimb stylopod muscle | 2 |
| seminal vesicle | 2 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|
| BTNL2 | 106 | | yes | sural nerve, ventricular zone, primordial germ cell in gonad |
| SUPT3H | 206 | ubiquitous | yes | primordial germ cell in gonad, sperm, male germ line stem cell (sensu Vertebrata) in testis |
| PARD3B | 200 | ubiquitous | marker | sural nerve, cardiac muscle of right atrium, ventricular zone |
| TAS1R2 | 5 | | yes | bone marrow cell, skin of leg, sural nerve |
| EPPK1 | 190 | broad | marker | skin of hip, upper leg skin, gingival epithelium |
| NOD1 | 220 | ubiquitous | marker | sural nerve, left ovary, right lobe of thyroid gland |
| WWP2 | 279 | ubiquitous | marker | tibia, tendon of biceps brachii, ascending aorta |
| ANKRD6 | 272 | ubiquitous | marker | blood vessel layer, right hemisphere of cerebellum, right uterine tube |
| LRRN1 | 209 | broad | marker | ventricular zone, ganglionic eminence, dorsal root ganglion |
| SBNO1 | 275 | ubiquitous | marker | male germ line stem cell (sensu Vertebrata) in testis, postcentral gyrus, parietal lobe |
| CNKSR3 | 242 | ubiquitous | marker | esophagus squamous epithelium, pigmented layer of retina, ileal mucosa |
| GLT8D1 | 296 | ubiquitous | marker | pituitary gland, bronchial epithelial cell, adenohypophysis |
| FRMD4A | 272 | ubiquitous | marker | sural nerve, ganglionic eminence, oocyte |
| DDX10 | 261 | ubiquitous | marker | sural nerve, male germ line stem cell (sensu Vertebrata) in testis, calcaneal tendon |
| GLIS3 | 213 | ubiquitous | marker | buccal mucosa cell, epithelial cell of pancreas, pancreatic ductal cell |
| DYNC1I1 | 242 | broad | marker | endothelial cell, pons, cortical plate |
| CRBN | 288 | ubiquitous | marker | calcaneal tendon, Brodmann (1909) area 23, skin of hip |
| GALNT18 | 222 | ubiquitous | marker | right lung, upper lobe of left lung, upper lobe of lung |
| ZBED5 | 287 | ubiquitous | marker | tibia, epithelium of nasopharynx, ganglionic eminence |
| C11orf87 | 93 | broad | marker | endothelial cell, lateral nuclear group of thalamus, Brodmann (1909) area 23 |
| LSP1P3 | 67 | tissue_specific | yes | blood, colonic epithelium, ventricular zone |
| GDF5 | 116 | broad | yes | parotid gland, pericardium, cartilage tissue |
| RNF32-DT | 195 | ubiquitous | marker | secondary oocyte, oocyte, cortical plate |
| HLA-DQA2 | 127 | broad | marker | granulocyte, vermiform appendix, male germ line stem cell (sensu Vertebrata) in testis |
| HLA-DQB1 | 268 | broad | marker | right lung, spleen, upper lobe of left lung |
| LTBP1 | 291 | ubiquitous | marker | blood vessel layer, right coronary artery, descending thoracic aorta |
| SMAD3 | 288 | ubiquitous | marker | tendon of biceps brachii, cartilage tissue, hindlimb stylopod muscle |
| PAX7 | 61 | tissue_specific | marker | olfactory segment of nasal mucosa, nasal cavity epithelium, nasal cavity mucosa |
| PLA2G4A | 248 | ubiquitous | marker | seminal vesicle, cartilage tissue, right uterine tube |
| PLEC | 283 | ubiquitous | marker | sural nerve, hindlimb stylopod muscle, tibial nerve |
Protein interactions among cohort
Intra-cohort edges: 6.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|
| SMAD3 | 6,440 |
| PTGS2 | 5,663 |
| WWP2 | 4,978 |
| DDX10 | 4,282 |
| PLEC | 3,529 |
| PAX7 | 2,847 |
| PLA2G4A | 2,535 |
| CRBN | 2,201 |
| DYNC1I1 | 2,094 |
| NOD1 | 2,067 |
Intra-cohort edges
| A | B | Sources |
|---|
| BTNL2 | HLA-DQA2 | string_interaction |
| BTNL2 | HLA-DQB1 | intact |
| CRBN | LRRN1 | string_interaction |
| GLT8D1 | SUPT3H | string_interaction |
| PLA2G4A | PTGS2 | string_interaction |
| SMAD3 | WWP2 | intact |
Structural data
PDB: 13 · AlphaFold-only: 17 · No structure: 1
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|
| CRBN | Q96SW2 | 90 |
| TAS1R2 | Q8TE23 | 25 |
| GDF5 | P43026 | 15 |
| PLEC | Q15149 | 14 |
| SMAD3 | P84022 | 12 |
| WWP2 | O00308 | 11 |
| HLA-DQB1 | P01920 | 10 |
| PTGS2 | P35354 | 7 |
| NOD1 | Q9Y239 | 6 |
| SUPT3H | O75486 | 4 |
| PLA2G4A | P47712 | 3 |
| DDX10 | Q13206 | 1 |
| LTBP1 | Q14766 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|
| HLA-DQA2 | P01906 | 89.29 |
| GALNT18 | Q6P9A2 | 89.10 |
| BTNL2 | Q9UIR0 | 85.97 |
| GLT8D1 | Q68CQ7 | 85.35 |
| LRRN1 | Q6UXK5 | 82.05 |
| ZBED5 | Q49AG3 | 81.57 |
| DYNC1I1 | O14576 | 71.20 |
| ANKRD6 | Q9Y2G4 | 70.82 |
| SBNO1 | A3KN83 | 68.08 |
| CNKSR3 | Q6P9H4 | 64.67 |
| PAX7 | P23759 | 63.21 |
| FRMD4A | Q9P2Q2 | 62.95 |
| C11orf87 | Q6NUJ2 | 58.55 |
| PARD3B | Q8TEW8 | 55.56 |
| GLIS3 | Q8NEA6 | 49.95 |
| RNF32-DT | Q8NI28 | 37.53 |
| EPPK1 | P58107 | |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 123. Enrichment computed across 31 evidence-associated genes (17 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 17 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|
| phospho-PLA2 pathway | 1 | 335.9× | 0.052 | PLA2G4A |
| Biosynthesis of electrophilic ω-3 PUFA oxo-derivatives | 1 | 335.9× | 0.052 | PTGS2 |
| Loss of Function of SMAD4 in Cancer | 1 | 223.9× | 0.052 | SMAD3 |
| SMAD4 MH2 Domain Mutants in Cancer | 1 | 223.9× | 0.052 | SMAD3 |
| SMAD2/3 MH2 Domain Mutants in Cancer | 1 | 223.9× | 0.052 | SMAD3 |
| Biosynthesis of EPA-derived SPMs | 1 | 167.9× | 0.052 | PTGS2 |
| Biosynthesis of DPAn-3 SPMs | 1 | 167.9× | 0.052 | PTGS2 |
| Loss of Function of TGFBR1 in Cancer | 1 | 134.3× | 0.052 | SMAD3 |
| RUNX3 regulates BCL2L11 (BIM) transcription | 1 | 134.3× | 0.052 | SMAD3 |
| Acyl chain remodeling of CL | 1 | 112.0× | 0.052 | PLA2G4A |
| Synthesis of 15-eicosatetraenoic acid derivatives | 1 | 112.0× | 0.052 | PTGS2 |
| Loss of Function of SMAD2/3 in Cancer | 1 | 112.0× | 0.052 | SMAD3 |
| Signaling by TGF-beta Receptor Complex in Cancer | 1 | 112.0× | 0.052 | SMAD3 |
| SMAD2/3 Phosphorylation Motif Mutants in Cancer | 1 | 112.0× | 0.052 | SMAD3 |
| TGFBR1 KD Mutants in Cancer | 1 | 112.0× | 0.052 | SMAD3 |
| Biosynthesis of DHA-derived SPMs | 1 | 112.0× | 0.052 | PTGS2 |
| TGF-beta receptor signaling activates SMADs | 2 | 38.4× | 0.052 | LTBP1, SMAD3 |
| Molecules associated with elastic fibres | 2 | 36.3× | 0.052 | GDF5, LTBP1 |
| COPI-independent Golgi-to-ER retrograde traffic | 2 | 24.4× | 0.052 | DYNC1I1, PLA2G4A |
| Signaling by TGF-beta Receptor Complex | 2 | 23.6× | 0.052 | LTBP1, SMAD3 |
| Interferon gamma signaling | 2 | 14.8× | 0.052 | HLA-DQA2, HLA-DQB1 |
| Signaling by TGFB family members | 2 | 13.6× | 0.052 | LTBP1, SMAD3 |
| RUNX3 regulates CDKN1A transcription | 1 | 96.0× | 0.055 | SMAD3 |
| Hydrolysis of LPC | 1 | 74.6× | 0.068 | PLA2G4A |
| MHC class II antigen presentation | 2 | 10.5× | 0.075 | DYNC1I1, HLA-DQA2 |
| Type I hemidesmosome assembly | 1 | 61.1× | 0.077 | PLEC |
| Caspase-mediated cleavage of cytoskeletal proteins | 1 | 56.0× | 0.081 | PLEC |
| Butyrophilin (BTN) family interactions | 1 | 51.7× | 0.081 | BTNL2 |
| Formation of axial mesoderm | 1 | 48.0× | 0.081 | SMAD3 |
| Signaling by Activin | 1 | 44.8× | 0.081 | SMAD3 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 26 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|
| negative regulation of wound healing | 2 | 99.7× | 0.016 | EPPK1, SMAD3 |
| cellular response to fluid shear stress | 2 | 99.7× | 0.016 | PLEC, PTGS2 |
| prostaglandin biosynthetic process | 2 | 86.4× | 0.016 | PLA2G4A, PTGS2 |
| peptide antigen assembly with MHC class II protein complex | 2 | 81.0× | 0.016 | HLA-DQA2, HLA-DQB1 |
| wound healing | 3 | 26.3× | 0.016 | EPPK1, SMAD3, PLEC |
| positive regulation of chondrocyte differentiation | 2 | 61.7× | 0.020 | GDF5, SMAD3 |
| transcription by RNA polymerase II | 4 | 10.8× | 0.020 | SUPT3H, WWP2, GLIS3, PAX7 |
| skeletal muscle satellite cell commitment | 1 | 648.1× | 0.026 | PAX7 |
| protein-containing complex organization | 1 | 648.1× | 0.026 | PLEC |
| negative regulation of lung blood pressure | 1 | 648.1× | 0.026 | SMAD3 |
| cellular response to non-ionic osmotic stress | 1 | 648.1× | 0.026 | PTGS2 |
| regulation of miRNA transcription | 1 | 648.1× | 0.026 | SMAD3 |
| regulation of epithelium regeneration | 1 | 648.1× | 0.026 | EPPK1 |
| actomyosin contractile ring assembly actin filament organization | 1 | 648.1× | 0.026 | PLEC |
| antigen processing and presentation of exogenous peptide antigen via MHC class II | 2 | 41.8× | 0.026 | HLA-DQA2, HLA-DQB1 |
| positive regulation of immune response | 2 | 37.0× | 0.026 | HLA-DQA2, HLA-DQB1 |
| positive regulation of nitric oxide biosynthetic process | 2 | 35.0× | 0.026 | SMAD3, PTGS2 |
| positive regulation of T cell activation | 2 | 34.1× | 0.026 | HLA-DQA2, HLA-DQB1 |
| positive regulation of SMAD protein signal transduction | 2 | 29.5× | 0.033 | GDF5, SMAD3 |
| detection of chemical stimulus involved in sensory perception of sweet taste | 1 | 324.1× | 0.037 | TAS1R2 |
| skeletal myofibril assembly | 1 | 324.1× | 0.037 | PLEC |
| positive regulation of transforming growth factor beta3 production | 1 | 324.1× | 0.037 | SMAD3 |
| phosphatidylglycerol catabolic process | 1 | 324.1× | 0.037 | PLA2G4A |
| establishment of protein localization to extracellular region | 1 | 324.1× | 0.037 | LTBP1 |
| positive regulation of platelet-derived growth factor production | 1 | 324.1× | 0.037 | PTGS2 |
| leukocyte migration involved in immune response | 1 | 216.1× | 0.037 | PLEC |
| extracellular transport | 1 | 216.1× | 0.037 | WWP2 |
| regulation of cell fate commitment | 1 | 216.1× | 0.037 | PAX7 |
| transport along microtubule | 1 | 216.1× | 0.037 | DYNC1I1 |
| negative regulation of monoatomic ion transmembrane transport | 1 | 216.1× | 0.037 | CRBN |
Therapeutics
Drugs indicated for this disease
0 approved, 42 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): ARRY-797, Adalimumab, Astaxanthin, Atorvastatin, Canakinumab, Cannabinol, Cebranopadol, Colchicine, Dextrose, Eptotermin Alfa, Galcanezumab, Gefapixant, Hydroxychloroquine, Ibuprofen Trelamine, Ketorolac, Lutikizumab, Mannitol, Meloxicam, Mepivacaine, Methylprednisolone, Microcrystalline Cellulose, Neridronic Acid, Olive Oil, Oxycodegol, Oxytocin, Piclidenoson, Piroxicam, Platelets, Polmacoxib, Prednisolone, Somatropin, Sorbitol, Teriparatide, Tranexamic Acid, Triamcinolone, Valdecoxib.
Drug target analysis
Approved (phase 4): 5 · Phase ≥3: 5 · Phased (≥1): 6 · Undrugged: 25
Druggability breadth: 8 of 31 evidence-associated genes (26%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|
| PTGS2 | 192 | 4 |
| CRBN | 18 | 4 |
| PLA2G4A | 3 | 4 |
| SMAD3 | 2 | 4 |
| TAS1R2 | 1 | 1 |
| NOD1 | 1 | 4 |
| BTNL2 | 0 | 0 |
| SUPT3H | 0 | 0 |
| PARD3B | 0 | 0 |
| EPPK1 | 0 | 0 |
Drugs targeting cohort genes (top 30)
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 4.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|
| CRBN | 5,948 | Binding:5779, Functional:154, ADMET:15 |
| PTGS2 | 1,548 | Binding:1478, Functional:35, ADMET:34, Toxicity:1 |
| NOD1 | 111 | Binding:100, Functional:11 |
| PLA2G4A | 95 | Binding:91, Functional:4 |
| TAS1R2 | 30 | Functional:15, Binding:15 |
| SMAD3 | 24 | Binding:18, Functional:6 |
| PLEC | 12 | Binding:12 |
| DDX10 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|
| WWP2 | 2.3.2.26 | HECT-type E3 ubiquitin transferase |
| GALNT18 | 2.4.1.41 | polypeptide N-acetylgalactosaminyltransferase |
| PLA2G4A | 3.1.1.4 | phospholipase A2 |
| PTGS2 | 1.14.99.1 | prostaglandin-endoperoxide synthase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|
| NOD1 | 111 |
| CRBN | 5,948 |
| PTGS2 | 1,548 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 29; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
28 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|
| GEFITINIB | 4 | NOD1 |
| DASABUVIR | 4 | CRBN |
| POMALIDOMIDE | 4 | CRBN |
| THALIDOMIDE | 4 | CRBN |
| LENALIDOMIDE | 4 | CRBN |
| PONATINIB | 4 | CRBN |
| ASCIMINIB | 4 | CRBN |
| BRIGATINIB | 4 | CRBN |
| CRIZOTINIB | 4 | CRBN, PTGS2 |
| FLUORESCEIN | 4 | SMAD3 |
| ZAFIRLUKAST | 4 | PLA2G4A |
| ASPIRIN | 4 | PTGS2 |
| INDOMETHACIN | 4 | PTGS2 |
| ETODOLAC | 4 | PTGS2 |
| BEPRIDIL | 4 | PTGS2 |
| LEVODOPA | 4 | PTGS2 |
| CANDESARTAN CILEXETIL | 4 | PTGS2 |
| TOLMETIN | 4 | PTGS2 |
| CLOTRIMAZOLE | 4 | PTGS2 |
| SIMVASTATIN | 4 | PTGS2 |
| OXAPROZIN | 4 | PTGS2 |
| BROMFENAC | 4 | PTGS2 |
| ACETOPHENAZINE | 4 | PTGS2 |
| BIPERIDEN | 4 | PTGS2 |
| RUCAPARIB | 4 | PTGS2 |
| VILANTEROL | 4 | PTGS2 |
| DESERPIDINE | 4 | PTGS2 |
| OXYMETHOLONE | 4 | PTGS2 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|
| A | Approved (phase 4 drug) | 5 | NOD1, CRBN, SMAD3, PLA2G4A, PTGS2 |
| B | Phased (≥1) drug, not yet approved | 1 | TAS1R2 |
| C | Druggable family + PDB, no drug | 1 | HLA-DQB1 |
| D | Druggable family + AlphaFold only, no drug | 4 | BTNL2, LRRN1, GALNT18, HLA-DQA2 |
| E | Difficult family or no structure, no drug | 20 | SUPT3H, PARD3B, EPPK1, WWP2, ANKRD6, SBNO1, CNKSR3, GLT8D1, FRMD4A, DDX10 (+10 more) |
Undrugged target profiles
25 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|
| LRRN1 | 0 | CRBN |
| BTNL2 | 0 | — |
| SUPT3H | 0 | — |
| PARD3B | 0 | — |
| EPPK1 | 0 | — |
| WWP2 | 0 | — |
| ANKRD6 | 0 | — |
| SBNO1 | 0 | — |
| CNKSR3 | 0 | — |
| GLT8D1 | 0 | — |
| FRMD4A | 0 | — |
| DDX10 | 1 | — |
| GLIS3 | 0 | — |
| DYNC1I1 | 0 | — |
| GALNT18 | 0 | — |
| ZBED5 | 0 | — |
| C11orf87 | 0 | — |
| LSP1P3 | 0 | — |
| GDF5 | 0 | — |
| RNF32-DT | 0 | — |
| HLA-DQA2 | 0 | — |
| HLA-DQB1 | 0 | — |
| LTBP1 | 0 | — |
| PAX7 | 0 | — |
| PLEC | 12 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 987.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|
| Not specified | 638 |
| PHASE2 | 98 |
| PHASE4 | 84 |
| PHASE3 | 72 |
| PHASE1 | 42 |
| PHASE1/PHASE2 | 27 |
| PHASE2/PHASE3 | 16 |
| EARLY_PHASE1 | 10 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|
| NCT04082533 | PHASE4 | ACTIVE_NOT_RECRUITING | Intravenous (IV) Hydrocortisone for TKA (Total Knee Arthroplasty) |
| NCT04111718 | PHASE4 | ACTIVE_NOT_RECRUITING | The Impact of Procedural Awareness of Knee Injections for Osteoarthritis on Patient Perceptions of Effectiveness |
| NCT04641351 | PHASE4 | ACTIVE_NOT_RECRUITING | Corticosteroid Meniscectomy Randomized Trial |
| NCT05336968 | PHASE4 | RECRUITING | Triamcinolone Ketorolac (TriKe) Knee Trial |
| NCT05430230 | PHASE4 | ACTIVE_NOT_RECRUITING | Study of Nonsteroidal Anti-inflammatory Drugs in People With Painful Knee Osteoarthritis |
| NCT05761015 | PHASE4 | RECRUITING | Helping Osteoarthritis Patients to Walk With NSAID |
| NCT06083480 | PHASE4 | RECRUITING | Reducing Perioperative Oxidative Stress to Prevent Postoperative Chronic Pain Following Total Knee Arthroplasty |
| NCT06191848 | PHASE4 | RECRUITING | Subcutaneous Tirzepatide Once-weekly in Patients With Obesity and Knee Osteoarthritis (STOP KNEE-OA) |
| NCT06478186 | PHASE4 | RECRUITING | Knee Osteoarthritis Treatment With Zilretta vs. Kenalog in the Context of Type II Diabetes |
| NCT06557018 | PHASE4 | RECRUITING | Efficacy and Safety of Liposomal Bupivacaine Using Periarticular Injection in Total Knee Arthroplasty |
| NCT07203547 | PHASE4 | NOT_YET_RECRUITING | Phase 4 Study of Laybon Tab. in Knee Osteoarthritis |
| NCT00139776 | PHASE4 | COMPLETED | Study Of Continuous Use Of Celecoxib Vs. Usual or Intermittent Use |
| NCT00144820 | PHASE4 | UNKNOWN | Hyaluronan Versus NaCl 20 Ml Versus Placebo in Knee Osteoarthritis |
| NCT00208286 | PHASE4 | TERMINATED | P.F.C. Sigma Fixed Versus P.F.C. RP Mobile Bearing Total Knee Systems |
| NCT00208325 | PHASE4 | TERMINATED | PFC Sigma Fixed and Mobile Knee Study |
| NCT00294528 | PHASE4 | UNKNOWN | Comparing Clinical Outcome of 2 Different Total Knee Prostheses: Nexgen LPS-Flex Versus AGC |
| NCT00319280 | PHASE4 | COMPLETED | Proximal Tibial Open Wedge Osteotomy. A Clinical Prospective, Randomized RSA-trial. |
| NCT00375856 | PHASE4 | COMPLETED | Computer-Assisted Total Knee Replacement Kinematics: DePuy Sigma Posterior Cruciate Substituting Knee and the DePuy Sigma RP Rotating Platform Knee |
| NCT00426907 | PHASE4 | COMPLETED | Weightbearing After High Tibial Osteotomy |
| NCT00513422 | PHASE4 | UNKNOWN | The Long-term Evaluation of Glucosamine Sulphate Study |
| NCT00556608 | PHASE4 | COMPLETED | Efficacy Study of Intra-articular Hyaluronic Acid in the Knee Osteoarthritis |
| NCT00620867 | PHASE4 | COMPLETED | Efficacy and Safety of Celecoxib Versus Ibuprofen in the Treatment of Osteoarthritis of the Knee (United States) |
| NCT00630929 | PHASE4 | COMPLETED | Efficacy and Safety of Celecoxib Versus Ibuprofen in the Treatment of Osteoarthritis of the Knee (Europe) |
| NCT00638807 | PHASE4 | COMPLETED | Safety and Efficacy of Celecoxib Versus Placebo in the Treatment of Knee Osteoarthritis in Patients Who Were Unresponsive to Naproxen and Ibuprofen |
| NCT00640627 | PHASE4 | COMPLETED | Efficacy and Safety of Celecoxib Versus Placebo in the Treatment of Patients With Osteoarthritis of the Knee Who Were Unresponsive to Naproxen and Ibuprofen |
| NCT00643799 | PHASE4 | COMPLETED | Safety and Efficacy of Celecoxib Versus Naproxen in the 6-month Treatment of Knee Osteoarthritis |
| NCT00778076 | PHASE4 | UNKNOWN | The Impact of Hyaluronic Acid Injections on Osteoarthritic Knee Mechanics |
| NCT00894361 | PHASE4 | TERMINATED | Comparison of Mobile-Bearing and Fixed-Bearing All-Polyethylene Tibia Total Knee Designs |
| NCT00901628 | PHASE4 | COMPLETED | Periarticular Multimodal Drug Injections in Total Knee Arthroplasty |
| NCT00954954 | PHASE4 | COMPLETED | Outcomes After Standard and High-Flexion Posterior Stabilized Rotating-Platform Mobile-Bearing Total Knee Arthroplasty |
| NCT01102491 | PHASE4 | COMPLETED | Additional Anti-emetic Effect of Ramosetron Prophylaxis After Total Knee Arthroplasty |
| NCT01105936 | PHASE4 | COMPLETED | Assess the Blood-Oxygen-Level-Dependent (BOLD) Signal Changes in the Brain by Paracetamol as Measured by Functional Magnetic Resonance Imaging (fMRI) in Subjects With Osteoarthritis (OA) |
| NCT01120015 | PHASE4 | COMPLETED | Diacerein as Adjuvant to Diclofenac Sodium in Indian Patients of Osteoarthritis (OA) Knee |
| NCT01183624 | PHASE4 | COMPLETED | A Controlled Study of an Herbal Topical Patch in Treating Osteoarthritis (OA) of the Knee |
| NCT01475604 | PHASE4 | TERMINATED | Impact of Noninvasive Targeted Pulsed Electromagnetic Field (tPEMF) on Opioid Use, Pain, and Joint Function Following Total Knee Arthroplasty |
| NCT01538043 | PHASE4 | COMPLETED | Spa Therapy in Knee Osteoarthritis: Study on Cost/Effectiveness - Cost/Utility and Possible Mechanisms of Action |
| NCT01557868 | PHASE4 | COMPLETED | Prediction of Response to Intra-articular Injections of Hyaluronic Acid for Knee Osteoarthritis |
| NCT01612702 | PHASE4 | COMPLETED | Efficacy and Safety of Single, Low-dose Dexamethasone in Patients After Total Knee Arthroplasty |
| NCT01670578 | PHASE4 | COMPLETED | Platelet-rich Plasma vs Viscosupplementation in the Treatment of Knee Articular Degenerative Pathology |
| NCT01742897 | PHASE4 | COMPLETED | Efficacy and Safety Study of Transdermal Therapeutic System (TTS) Fentanyl in Participants With Osteoarthritis Knee Pain |
Drugs tested across these trials (top 30)
- Cohort genes: BTNL2, SUPT3H, PARD3B, TAS1R2, EPPK1, NOD1, WWP2, ANKRD6, LRRN1, SBNO1, CNKSR3, GLT8D1, FRMD4A, DDX10, GLIS3, DYNC1I1, CRBN, GALNT18, ZBED5, C11orf87, GDF5, RNF32-DT, HLA-DQA2, HLA-DQB1, LTBP1, SMAD3, PAX7, PLA2G4A, PLEC, PTGS2
- Drugs: Celecoxib, Hyaluronic Acid, Ketorolac, Glucosamine, Tranexamic Acid, Naproxen, Rivaroxaban, Epinephrine, Tapentadol, Capsaicin, Cefuroxime, Clonidine, Ibuprofen, Ketoprofen, Triamcinolone, Triamcinolone Acetonide, Acetaminophen, Adalimumab, Alfacalcidol, Betamethasone, Chlorzoxazone, Cortisone Acetate, Denosumab, Dexamethasone, Dextrose, Diclofenac, Dronabinol, Duloxetine, Enoxaparin, Ferric Carboxymaltose