Psoriasis

disease
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Summary

Psoriasis (MONDO:0005083) is a disease with 75 cohort genes (1,921 GWAS associations across 87 studies) and 1,154 clinical trials. The dominant Reactome pathway is TNFs bind their physiological receptors (8 cohort genes). Top therapeutic interventions include etanercept, cravacitinib, and calcipotriene.

At a glance

  • Cohort genes: 75
  • GWAS associations: 1,921
  • ClinVar variants: 2
  • Clinical trials: 1,154

Clinical features

No curated clinical features (Orphanet) for this disease.

Identifiers

Disease identifiers

FieldValue
Canonical namepsoriasis
Mondo IDMONDO:0005083
EFOEFO:0000676
MeSHD011565
OMIM177900
DOIDDOID:8893
ICD-10-CML40
ICD-1163698555
NCITC3346
SNOMED CT9014002
UMLSC0033860
MedGen10997
Is cancer (heuristic)no

Data availability: 2 ClinVar variants · 1,921 GWAS associations (87 studies) · 9 cell lines.

Disease family

An umbrella term covering 3 Mondo subtypes.

Classification path: disease › human disease › disease by body system or component › integumentary system disorder › skin disorderdermatitispsoriasis

Related subtypes (32): spongiotic dermatitis, atopic eczema, contact dermatitis, urticaria, acneiform dermatitis, acrodermatitis, folliculitis, granuloma annulare, granulomatous dermatitis, lichen planus, neurodermatitis, neurotic excoriation, parapsoriasis, pityriasis rosea, seborrheic dermatitis, acanthosis nigricans, dermatosis papulosa nigra, lichen sclerosus et atrophicus, vitiligo, acne, porphyria cutanea tarda, dermatomyositis, acute generalized exanthematous pustulosis, hydroa vacciniforme, autoimmune bullous skin disease, cutaneous vasculitis, skin infection, intertrigo, lipodermatosclerosis, exfoliative dermatitis, radiodermatitis, food dermatitis

Subtypes (3): psoriasis 2, pustular psoriasis, guttate psoriasis

Genetics & variants

GWAS landscape

1,921 GWAS associations across 87 studies. Top hits map to 27 distinct genes (as reported by GWAS).

Top associations by p-value

rsIDp-valueGeneRisk alleleOdds ratio
rs57432931e-320NOD2, CYLD-AS1?
rs104845542e-302LINC02571 - HLA-BT1.67
rs132148722e-302RPL3P2 - WASF5PG1.67
rs12651812e-208PSORS1C3 - HCG27?22.62
rs801746461e-143IL23R?
rs121918771e-100RPL3P2 - WASF5PT2.64
rs75178471e-98IL23R, C1orf141?
rs20668456e-94NOD2?
chr5: 1588295273e-84A0.53
rs19926611e-74RNU1-150P - TTC33?
rs353002425e-67ATG16L1?
rs351980685e-65TCF7L2C1.21
rs64268337e-62RNF186-AS1 - OTUD3?
chr5: 1504699731e-58A0.49
rs121883002e-56IL12B-AS1T1.31
rs176223782e-55IRF1, CARINH?
rs31979997e-55MST1?
rs99776725e-54LINC02940 - RPL23AP12?
rs4697586e-54ERAP1?
rs359607114e-53SCRN1G1.58
rs46725052e-52RN7SL51P - RN7SL18P?
rs107487816e-51LINC01475?
rs623775863e-50IL12B-AS1G1.18
rs16347747e-49LINC02571 - HLA-B?0.48
rs109952713e-48LINC02929 - ALDH7A1P4?
rs23576234e-48NKD1 - SNX20?
rs93686112e-46HLA-F-AS1?0.64
rs93801513e-46POLR1HASP, POLR1HASP?0.62
rs339805004e-45TRAF3IP2-AS1, TRAF3IP2T1.52
rs108700776e-45CARD9?

Top studies (by case count)

StudyLead authorYearCasesControlsTitle
GCST90019016Stuart PE202115,96728,194Transethnic analysis of psoriasis susceptibility in South Asians and Europeans enhances fine-mapping in the MHC and genomewide.
GCST90019017Stuart PE202115,96728,194Transethnic analysis of psoriasis susceptibility in South Asians and Europeans enhances fine-mapping in the MHC and genomewide.
GCST005321Broce I201812,57723,475Immune-related genetic enrichment in frontotemporal dementia: An analysis of genome-wide association studies.
GCST004346Tsoi LC201711,988275,335Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.
GCST008479Zuo X201511,24511,177Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.
GCST90244705Patrick MT202211,024139,840Shared genetic risk factors and causal association between psoriasis and coronary artery disease.
GCST011990Patrick MT202011,024840,342Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.
GCST011991Patrick MT202011,024840,342Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.
GCST011109Yang C201910,66810,679Exome-Wide Rare Loss-of-Function Variant Enrichment Study of 21,347 Han Chinese Individuals Identifies Four Susceptibility Genes for Psoriasis.
GCST005527Tsoi LC201210,58822,806Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.

Variant details and genetic-evidence tiers

Tier distribution (top 50 variants)

TierVariants
Tier 1: coding5
Tier 2: splice/UTR0
Tier 3: regulatory3
Tier 4: intronic/intergenic42

MAF distribution

BucketVariants
common (>=0.05)40
low_freq (0.01-0.05)0
rare (<0.01)0
unknown10

Functional consequences

ConsequenceCount
intron_variant22
intergenic_variant14
unknown5
missense_variant4
regulatory_region_variant2
frameshift_variant1
TF_binding_site_variant1
non_coding_transcript_exon_variant1

Top variants

rsIDChrPosAllelesMAFConsequenceGenep-valueTier
chr6: 30916259Tier 4: intronic/intergenic
rs4406273631298313G>A,T0.092intron_variantLINC02571Tier 4: intronic/intergenic
rs57432931650729868frameshift_variantNOD2, CYLD-AS11e-320Tier 1: coding
rs10484554631306778C>T0.05intron_variantLINC02571 - HLA-B2e-302Tier 4: intronic/intergenic
rs13214872631287231C>G0.05intron_variantRPL3P2 - WASF5P2e-302Tier 4: intronic/intergenic
rs1265181631188008G>C0.05intron_variantPSORS1C3 - HCG272e-208Tier 4: intronic/intergenic
rs80174646167242472G>T0.05intron_variantIL23R1e-143Tier 4: intronic/intergenic
rs12191877631285148C>T0.15intron_variantRPL3P2 - WASF5P1e-100Tier 4: intronic/intergenic
rs7517847167215986T>A,C,G0.05intron_variantIL23R, C1orf1411e-98Tier 4: intronic/intergenic
rs20668451650722629G>C,Tmissense_variantNOD26e-94Tier 1: coding
chr5: 1588295273e-84Tier 4: intronic/intergenic
rs1992661540414887G>A0.05intron_variantRNU1-150P - TTC331e-74Tier 4: intronic/intergenic
rs353002422233260144G>A,C0.05intron_variantATG16L15e-67Tier 4: intronic/intergenic
rs3519806810112995025T>C0.05intron_variantTCF7L25e-65Tier 4: intronic/intergenic
rs6426833119845367G>A,C,T0.05TF_binding_site_variantRNF186-AS1 - OTUD37e-62Tier 3: regulatory
chr5: 1504699731e-58Tier 4: intronic/intergenic
rs121883005159402519A>G,T0.05intergenic_variantIL12B-AS12e-56Tier 4: intronic/intergenic
rs176223785132442760A>G0.05intron_variantIRF1, CARINH2e-55Tier 4: intronic/intergenic
rs3197999349684099G>A,C,T0.05missense_variantMST17e-55Tier 1: coding
rs99776722139091357G>A0.05intergenic_variantLINC02940 - RPL23AP125e-54Tier 4: intronic/intergenic
rs469758596786011C>T0.05intron_variantERAP16e-54Tier 4: intronic/intergenic
rs35960711729940855C>A,T0.05missense_variantSCRN14e-53Tier 1: coding
rs4672505262333197A>C,G,T0.05intron_variantRN7SL51P - RN7SL18P2e-52Tier 4: intronic/intergenic
rs107487811099523573C>A,G0.05non_coding_transcript_exon_variantLINC014756e-51Tier 4: intronic/intergenic
rs623775865159339014G>A0.05intergenic_variantIL12B-AS13e-50Tier 4: intronic/intergenic
rs1634774631335498A>G0.05intron_variantLINC02571 - HLA-B7e-49Tier 4: intronic/intergenic
rs109952711062678726G>A,C0.05intergenic_variantLINC02929 - ALDH7A1P43e-48Tier 4: intronic/intergenic
rs23576231650660100A>G,T0.05intergenic_variantNKD1 - SNX204e-48Tier 4: intronic/intergenic
rs9368611629772040A>Cintron_variantHLA-F-AS12e-46Tier 4: intronic/intergenic
rs9380151630052051T>C0.05intron_variantPOLR1HASP, POLR1HASP3e-46Tier 4: intronic/intergenic

ClinVar germline variants

2 retrieved; paginated sample, class counts are floors:

1 likely pathogenic, 1 benign/likely benign

ClinVarVariant (HGVS)GeneClassificationReview
1691222NM_014339.7(IL17RA):c.1173C>G (p.Tyr391Ter)IL17RALikely pathogenicno assertion criteria provided
97813NM_001375808.2(LPIN2):c.1159A>G (p.Lys387Glu)LPIN2Benign/Likely benigncriteria provided, multiple submitters, no conflicts

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 0 · Orphanet: 63 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0

Orphanet rare-disease linkage (cohort genes)

GeneOrphanet IDRare disease
RORCOrphanet:477857Mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiency
RPS26Orphanet:124Diamond-Blackfan anemia
RUNX1Orphanet:102724Acute myeloid leukemia with t(8;21)(q22;q22) translocation
RUNX1Orphanet:521Chronic myeloid leukemia
RUNX1Orphanet:71290Familial platelet disorder with associated myeloid malignancy
RUNX1Orphanet:98850Aggressive systemic mastocytosis
SONOrphanet:500150ZTTK syndrome
BTDOrphanet:79241Biotinidase deficiency
STAT2Orphanet:431166Primary immunodeficiency with post-measles-mumps-rubella vaccine viral infection
STAT3Orphanet:2314Autosomal dominant hyper-IgE syndrome due to STAT3 deficiency
STAT3Orphanet:438159STAT3-related early-onset multisystem autoimmune disease
STAT3Orphanet:512017Chronic lymphoproliferative disorder of natural killer cells
STAT3Orphanet:520Acute promyelocytic leukemia
STAT3Orphanet:667662Breast implant-associated anaplastic large cell lymphoma
STAT3Orphanet:86872T-cell large granular lymphocyte leukemia
STAT3Orphanet:99885Isolated permanent neonatal diabetes mellitus
STK11Orphanet:2869Peutz-Jeghers syndrome
SUOXOrphanet:99731Isolated sulfite oxidase deficiency
TGM3Orphanet:1410Uncombable hair syndrome
MYRFOrphanet:647811Cardiac-urogenital syndrome
TLR4Orphanet:117Behçet disease
TNFAIP3Orphanet:536Systemic lupus erythematosus
TNFAIP3Orphanet:674762Early-onset autoinflammatory syndrome due to A20 haploinsufficiency
TNFRSF1AOrphanet:32960Tumor necrosis factor receptor 1 associated periodic syndrome
TNFRSF1AOrphanet:329967Intermittent hydrarthrosis
CD40Orphanet:101090Hyper-IgM syndrome type 3
TNFRSF9Orphanet:664726EBV-induced lymphoproliferative disease due to CD137 deficiency
TNFSF15Orphanet:186Primary biliary cholangitis
CD40LGOrphanet:101088X-linked hyper-IgM syndrome
FASLGOrphanet:3261Autoimmune lymphoproliferative syndrome
TSC1Orphanet:210159Adult hepatocellular carcinoma
TSC1Orphanet:269008Isolated focal cortical dysplasia type IIb
TSC1Orphanet:538Lymphangioleiomyomatosis
TSC1Orphanet:805Tuberous sclerosis complex
TYK2Orphanet:300865Primary cutaneous anaplastic large cell lymphoma
TYK2Orphanet:331226Susceptibility to infection due to TYK2 deficiency
TYK2Orphanet:98842Lymphomatoid papulosis
TYRP1Orphanet:79433Oculocutaneous albinism type 3
UBE2L3Orphanet:536Systemic lupus erythematosus
ACTA2Orphanet:2573Moyamoya disease
ACTA2Orphanet:404463Multisystemic smooth muscle dysfunction syndrome
ACTA2Orphanet:91387Familial thoracic aortic aneurysm and aortic dissection
IKZF3Orphanet:67038B-cell chronic lymphocytic leukemia
IKZF3Orphanet:699590Immune dysregulation with immunodeficiency due to AIOLOS haploinsufficiency
IKZF3Orphanet:699593Combined immunodeficiency-lymphopenia-cancer predisposing syndrome due to AIOLOS deficiency
TRAF3IP2Orphanet:1334Chronic mucocutaneous candidiasis
ANO3Orphanet:420485Cranio-cervical dystonia with laryngeal and upper-limb involvement
BACH2Orphanet:714472Inflammatory bowel disease-autoimmunity-sinopulmonary infections-lymphadenopathy syndrome
LPIN2Orphanet:77297Majeed syndrome
CASROrphanet:417Neonatal severe primary hyperparathyroidism

Cohort genes → proteins

75 cohort genes, 75 distinct canonical proteins.

Evidence partition

SubsetGenes
gwas_only74
multi_evidence1

Cohort genes (full)

SymbolHGNCEnsemblUniProtNameEvidence
RGS6HGNC:10002ENSG00000182732P49758Regulator of G-protein signaling 6gwas
RORCHGNC:10260ENSG00000143365P51449Nuclear receptor ROR-gammagwas
RPS26HGNC:10414ENSG00000197728P62854Small ribosomal subunit protein eS26gwas
RPS6KA4HGNC:10433ENSG00000162302O75676Ribosomal protein S6 kinase alpha-4gwas
RPS6KB1HGNC:10436ENSG00000108443P23443Ribosomal protein S6 kinase beta-1gwas
RUNX1HGNC:10471ENSG00000159216Q01196Runt-related transcription factor 1gwas
RUNX3HGNC:10473ENSG00000020633Q13761Runt-related transcription factor 3gwas
CCL21HGNC:10620ENSG00000137077O00585C-C motif chemokine 21gwas
XCL1HGNC:10645ENSG00000143184P47992Lymphotactingwas
SDC4HGNC:10661ENSG00000124145P31431Syndecan-4gwas
BRAPHGNC:1099ENSG00000089234Q7Z569BRCA1-associated proteingwas
SLIT1HGNC:11085ENSG00000187122O75093Slit homolog 1 proteingwas
SNAI1HGNC:11128ENSG00000124216O95863Zinc finger protein SNAI1gwas
BSNHGNC:1117ENSG00000164061Q9UPA5Protein bassoongwas
SONHGNC:11183ENSG00000159140P18583Protein SONgwas
BTDHGNC:1122ENSG00000169814P43251Biotinidasegwas
SPRR1BHGNC:11260ENSG00000169469P22528Cornifin-Bgwas
SPRR3HGNC:11268ENSG00000163209Q9UBC9Small proline-rich protein 3gwas
STAT2HGNC:11363ENSG00000170581P52630Signal transducer and activator of transcription 2gwas
STAT3HGNC:11364ENSG00000168610P40763Signal transducer and activator of transcription 3gwas
STK11HGNC:11389ENSG00000118046Q15831Serine/threonine-protein kinase STK11gwas
SUOXHGNC:11460ENSG00000139531P51687Sulfite oxidase, mitochondrialgwas
TARBP1HGNC:11568ENSG00000059588Q13395tRNA (guanosine(18)-2’-O)-methyltransferase TARBP1gwas
ELOAHGNC:11620ENSG00000011007Q14241Elongin-Agwas
ACO1HGNC:117ENSG00000122729P21399Cytoplasmic aconitate hydratasegwas
TGM3HGNC:11779ENSG00000125780Q08188Protein-glutamine gamma-glutamyltransferase Egwas
MYRFHGNC:1181ENSG00000124920Q9Y2G1Myelin regulatory factorgwas
TLR4HGNC:11850ENSG00000136869O00206Toll-like receptor 4gwas
TNFAIP3HGNC:11896ENSG00000118503P21580Tumor necrosis factor alpha-induced protein 3gwas
TNFRSF14HGNC:11912ENSG00000157873Q92956Tumor necrosis factor receptor superfamily member 14gwas
TNFRSF1AHGNC:11916ENSG00000067182P19438Tumor necrosis factor receptor superfamily member 1Agwas
CD40HGNC:11919ENSG00000101017P25942Tumor necrosis factor receptor superfamily member 5gwas
TNFRSF6BHGNC:11921ENSG00000243509O95407Tumor necrosis factor receptor superfamily member 6Bgwas
TNFRSF9HGNC:11924ENSG00000049249Q07011Tumor necrosis factor receptor superfamily member 9gwas
TNFSF15HGNC:11931ENSG00000181634O95150Tumor necrosis factor ligand superfamily member 15gwas
TNFSF18HGNC:11932ENSG00000120337Q9UNG2Tumor necrosis factor ligand superfamily member 18gwas
CD40LGHGNC:11935ENSG00000102245P29965CD40 ligandgwas
FASLGHGNC:11936ENSG00000117560P48023Tumor necrosis factor ligand superfamily member 6gwas
TNFSF8HGNC:11938ENSG00000106952P32971Tumor necrosis factor ligand superfamily member 8gwas
TNP2HGNC:11952ENSG00000178279Q05952Nuclear transition protein 2gwas
TSC1HGNC:12362ENSG00000165699Q92574Hamartingwas
EIPR1HGNC:12383ENSG00000032389Q53HC9EARP and GARP complex-interacting protein 1gwas
TYK2HGNC:12440ENSG00000105397P29597Non-receptor tyrosine-protein kinase TYK2gwas
TYRP1HGNC:12450ENSG00000107165P176435,6-dihydroxyindole-2-carboxylic acid oxidasegwas
UBASH3AHGNC:12462ENSG00000160185P57075Ubiquitin-associated and SH3 domain-containing protein Agwas
UBE2L3HGNC:12488ENSG00000185651P68036Ubiquitin-conjugating enzyme E2 L3gwas
ACTA2HGNC:130ENSG00000107796P62736Actin, aortic smooth musclegwas
RNF114HGNC:13094ENSG00000124226Q9Y508E3 ubiquitin-protein ligase RNF114gwas
SIRAL2HGNC:1313ENSG00000100376Q9NWS6Protein FAM118Agwas
IKZF3HGNC:13178ENSG00000161405Q9UKT9Zinc finger protein Aiolosgwas

Cohort function summary

Lead sentence per gene, UniProt-curated.

SymbolProtein nameFunction (lead sentence)
RGS6Regulator of G-protein signaling 6Regulates G protein-coupled receptor signaling cascades.
RORCNuclear receptor ROR-gammaNuclear receptor that binds DNA as a monomer to ROR response elements (RORE) containing a single core motif half-site 5’-AGGTCA-3’ preceded by a short A-T-rich sequence.
RPS26Small ribosomal subunit protein eS26Component of the small ribosomal subunit.
RPS6KA4Ribosomal protein S6 kinase alpha-4Serine/threonine-protein kinase that is required for the mitogen or stress-induced phosphorylation of the transcription factors CREB1 and ATF1 and for the regulation of the transcription factor RELA, and that contributes to gene activation…
RPS6KB1Ribosomal protein S6 kinase beta-1Serine/threonine-protein kinase that acts downstream of mTOR signaling in response to growth factors and nutrients to promote cell proliferation, cell growth and cell cycle progression.
RUNX1Runt-related transcription factor 1Forms the heterodimeric complex core-binding factor (CBF) with CBFB.
RUNX3Runt-related transcription factor 3Forms the heterodimeric complex core-binding factor (CBF) with CBFB.
CCL21C-C motif chemokine 21Inhibits hemopoiesis and stimulates chemotaxis.
XCL1LymphotactinChemotactic activity for lymphocytes but not for monocytes or neutrophils.
SDC4Syndecan-4Cell surface proteoglycan which regulates exosome biogenesis in concert with SDCBP and PDCD6IP.
BRAPBRCA1-associated proteinNegatively regulates MAP kinase activation by limiting the formation of Raf/MEK complexes probably by inactivation of the KSR1 scaffold protein.
SLIT1Slit homolog 1 proteinThought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors.
SNAI1Zinc finger protein SNAI1Involved in induction of the epithelial to mesenchymal transition (EMT), formation and maintenance of embryonic mesoderm, growth arrest, survival and cell migration.
BSNProtein bassoonScaffold protein of the presynaptic cytomatrix at the active zone (CAZ) which is the place in the synapse where neurotransmitter is released.
SONProtein SONRNA-binding protein that acts as a mRNA splicing cofactor by promoting efficient splicing of transcripts that possess weak splice sites.
BTDBiotinidaseCatalytic release of biotin from biocytin, the product of biotin-dependent carboxylases degradation.
SPRR1BCornifin-BCross-linked envelope protein of keratinocytes.
SPRR3Small proline-rich protein 3Cross-linked envelope protein of keratinocytes.
STAT2Signal transducer and activator of transcription 2Signal transducer and activator of transcription that mediates signaling by type I interferons (IFN-alpha and IFN-beta).
STAT3Signal transducer and activator of transcription 3Signal transducer and transcription activator that mediates cellular responses to interleukins, KITLG/SCF, LEP and other growth factors.
STK11Serine/threonine-protein kinase STK11Tumor suppressor serine/threonine-protein kinase that controls the activity of AMP-activated protein kinase (AMPK) family members, thereby playing a role in various processes such as cell metabolism, cell polarity, apoptosis and DNA damage…
SUOXSulfite oxidase, mitochondrialCatalyzes the oxidation of sulfite to sulfate, the terminal reaction in the oxidative degradation of sulfur-containing amino acids.
TARBP1tRNA (guanosine(18)-2’-O)-methyltransferase TARBP1S-adenosyl-L-methionine-dependent 2’-O-ribose methyltransferase that catalyzes the formation of 2’-O-methylguanosine at position 18 (Gm18) in a subset of tRNA.
ELOAElongin-ASIII, also known as elongin, is a general transcription elongation factor that increases the RNA polymerase II transcription elongation past template-encoded arresting sites.
ACO1Cytoplasmic aconitate hydrataseBifunctional iron sensor that switches between 2 activities depending on iron availability.
TGM3Protein-glutamine gamma-glutamyltransferase ECatalyzes the calcium-dependent formation of isopeptide cross-links between glutamine and lysine residues in various proteins, as well as the conjugation of polyamines to proteins.
MYRFMyelin regulatory factorConstitutes a precursor of the transcription factor.
TLR4Toll-like receptor 4Transmembrane receptor that functions as a pattern recognition receptor recognizing pathogen- and damage-associated molecular patterns (PAMPs and DAMPs) to induce innate immune responses via downstream signaling pathways.
TNFAIP3Tumor necrosis factor alpha-induced protein 3Ubiquitin-editing enzyme that contains both ubiquitin ligase and deubiquitinase activities.
TNFRSF14Tumor necrosis factor receptor superfamily member 14Receptor for four distinct ligands: The TNF superfamily members TNFSF14/LIGHT and homotrimeric LTA/lymphotoxin-alpha and the immunoglobulin superfamily members BTLA and CD160, altogether defining a complex stimulatory and inhibitory signal…
TNFRSF1ATumor necrosis factor receptor superfamily member 1AReceptor for TNFSF2/TNF and homotrimeric TNFSF1/lymphotoxin-alpha.
CD40Tumor necrosis factor receptor superfamily member 5Receptor for TNFSF5/CD40LG.
TNFRSF6BTumor necrosis factor receptor superfamily member 6BDecoy receptor that can neutralize the cytotoxic ligands TNFS14/LIGHT, TNFSF15 and TNFSF6/FASL.
TNFRSF9Tumor necrosis factor receptor superfamily member 9Receptor for TNFSF9/4-1BBL.
TNFSF15Tumor necrosis factor ligand superfamily member 15Receptor for TNFRSF25 and TNFRSF6B.
TNFSF18Tumor necrosis factor ligand superfamily member 18Cytokine that binds to TNFRSF18/AITR/GITR.
CD40LGCD40 ligandCytokine that acts as a ligand to CD40/TNFRSF5.
FASLGTumor necrosis factor ligand superfamily member 6Cytokine that binds to TNFRSF6/FAS, a receptor that transduces the apoptotic signal into cells.
TNFSF8Tumor necrosis factor ligand superfamily member 8Cytokine that binds to TNFRSF8/CD30.
TNP2Nuclear transition protein 2Plays a key role in the replacement of histones to protamine in the elongating spermatids of mammals.
TSC1HamartinNon-catalytic component of the TSC-TBC complex, a multiprotein complex that acts as a negative regulator of the canonical mTORC1 complex, an evolutionarily conserved central nutrient sensor that stimulates anabolic reactions and macromolec…
EIPR1EARP and GARP complex-interacting protein 1Acts as a component of endosomal retrieval machinery that is involved in protein transport from early endosomes to either recycling endosomes or the trans-Golgi network.
TYK2Non-receptor tyrosine-protein kinase TYK2Tyrosine kinase of the non-receptor type involved in numerous cytokines and interferons signaling, which regulates cell growth, development, cell migration, innate and adaptive immunity.
TYRP15,6-dihydroxyindole-2-carboxylic acid oxidasePlays a role in melanin biosynthesis.
UBASH3AUbiquitin-associated and SH3 domain-containing protein AInterferes with CBL-mediated down-regulation and degradation of receptor-type tyrosine kinases.
UBE2L3Ubiquitin-conjugating enzyme E2 L3Ubiquitin-conjugating enzyme E2 that specifically acts with HECT-type and RBR family E3 ubiquitin-protein ligases.
ACTA2Actin, aortic smooth muscleActins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
RNF114E3 ubiquitin-protein ligase RNF114E3 ubiquitin-protein ligase that promotes the ubiquitination of various substrates.
IKZF3Zinc finger protein AiolosTranscription factor that plays an important role in the regulation of lymphocyte differentiation.
TRAF3IP2E3 ubiquitin ligase TRAF3IP2E3 ubiquitin ligase that catalyzes ‘Lys-63’-linked polyubiquitination of target protein, enhancing protein-protein interaction and cell signaling.

Protein-family classification

Druggable: 20 · Difficult: 17 · Unknown: 38 · Druggable fraction: 0.27

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

FamilyGenesFoldFDR
Kinase72.6×0.184
Transcription factor141.5×0.324
Nuclear receptor15.2×0.590
Complement13.6×0.612
Enzyme (other)71.1×0.872
Phosphatase11.1×0.927
Other/Unknown380.9×0.927
Scaffold/PPI30.7×0.927
GPCR20.6×0.927
Antibody/Immunoglobulin10.4×0.927

Per-gene assignment

SymbolFamilyDruggable?ECInterPro (top 3)
RGS6Other/UnknownnoDEP_dom, G-protein_gamma-like_dom, RGS
RORCNuclear receptoryesNucl_hrmn_rcpt_lig-bd, Znf_hrmn_rcpt, Nuclear_hrmn_rcpt
RPS26Other/UnknownnoRibosomal_eS26, Ribosomal_eS26_sf, Ribosomal_eS26_CS
RPS6KA4KinaseyesProt_kinase_dom, AGC-kinase_C, Ser/Thr_kinase_AS
RPS6KB1Kinaseyes2.7.11.1Prot_kinase_dom, AGC-kinase_C, Ser/Thr_kinase_AS
RUNX1Transcription factornoAML1_Runt, p53-like_TF_DNA-bd_sf, p53/RUNT-type_TF_DNA-bd_sf
RUNX3Transcription factornoAML1_Runt, p53-like_TF_DNA-bd_sf, p53/RUNT-type_TF_DNA-bd_sf
CCL21Other/UnknownnoChemokine_IL8-like_dom, Chemokine_CC_DCCL, Interleukin_8-like_sf
XCL1Other/UnknownnoChemokine_IL8-like_dom, Chemokine_XCL1/XCL2, Interleukin_8-like_sf
SDC4Other/UnknownnoSyndecan, Neurexin-like, Syndecan/Neurexin_dom
BRAPTranscription factornoZnf_UBP, Znf_RING, BRAP2/ETP1_RRM
SLIT1Other/UnknownnoEGF-type_Asp/Asn_hydroxyl_site, LRRNT, Cys-rich_flank_reg_C
SNAI1Transcription factornoZnf_C2H2_type, Znf_C2H2_sf,
BSNTranscription factornoZnf_piccolo, Znf_FYVE_PHD, Znf_RING/FYVE/PHD
SONScaffold/PPInoG_patch_dom, dsRBD_dom,
BTDEnzyme (other)yes3.5.1.12C-N_Hydrolase, Biotinidase-like_euk, C-N_Hydrolase_sf
SPRR1BOther/Unknownno
SPRR3Other/Unknownno
STAT2Transcription factornoSH2, STAT, p53-like_TF_DNA-bd_sf
STAT3Transcription factornoSH2, STAT, p53-like_TF_DNA-bd_sf
STK11Kinaseyes2.7.11.1Prot_kinase_dom, Ser/Thr_kinase_AS, Kinase-like_dom_sf
SUOXEnzyme (other)yes1.8.3.1OxRdtase_Mopterin-bd_dom, Cyt_B5-like_heme/steroid-bd, MoCF_OxRdtse_dimer
TARBP1Enzyme (other)yes2.1.1.34SpoU_MeTrfase, ARM-type_fold, TARBP1
ELOAOther/UnknownnoF-box_dom, TFIIS/CRSP70_N_sub, RNA_pol_II_trans_fac_SIII_A
ACO1Enzyme (other)yes4.2.1.3AconitaseA/IPMdHydase_ssu_swvl, Acoase/IPM_deHydtase_lsu_aba, Aconitase/IRP2
TGM3Antibody/Immunoglobulinyes2.3.2.13Transglutaminase_N, Transglutaminase-like, Transglutaminase_C
MYRFTranscription factornop53-like_TF_DNA-bd_sf, NDT80_DNA-bd_dom, MYRF_C2
TLR4Other/UnknownnoTIR_dom, Cys-rich_flank_reg_C, Leu-rich_rpt
TNFAIP3Transcription factornoZnf_A20, OTU_dom, OTU_Deubiquitinase
TNFRSF14Other/UnknownnoTNFR/NGFR_Cys_rich_reg, TNFR_14, TNFRSF14/UL144_N
TNFRSF1AOther/UnknownnoDeath_dom, TNFR/NGFR_Cys_rich_reg, DEATH-like_dom_sf
CD40Other/UnknownnoTNFR/NGFR_Cys_rich_reg, TNFR_5, TNFRSF5_N
TNFRSF6BOther/UnknownnoTNFR/NGFR_Cys_rich_reg, TNFRSF6B_N, TNFRSF_decoy_receptor
TNFRSF9Other/UnknownnoTNFR/NGFR_Cys_rich_reg, Growth_fac_rcpt_cys_sf, TNFR_9
TNFSF15Other/UnknownnoTNF_dom, TNF, Tumour_necrosis_fac-like_dom
TNFSF18Other/UnknownnoTNF_dom, Tumour_necrosis_fac-like_dom, TNFSF18
CD40LGOther/UnknownnoCD40L, TNF_dom, Tumour_necrosis_fac-like_dom
FASLGOther/UnknownnoTNF_dom, TNF, Tumour_necrosis_fac-like_dom
TNFSF8Other/UnknownnoTNF_dom, Tumour_necrosis_fac-like_dom, TNF_CS
TNP2Other/UnknownnoTP2
TSC1Other/UnknownnoHamartin
EIPR1Scaffold/PPInoWD40_rpt, WD40/YVTN_repeat-like_dom_sf, WD40_repeat_CS
TYK2Kinaseyes2.7.10.2FERM_domain, Prot_kinase_dom, SH2
TYRP1Other/UnknownnoTyrosinase_Cu-bd, Di-copper_centre_dom_sf, Tyrosinase/Hemocyanin
UBASH3APhosphataseyesSH3_domain, UBA-like_sf, His_Pase_superF_clade-1
UBE2L3Enzyme (other)yes2.3.2.23UBC, UBQ-conjugating_enzyme/RWD, UBQ-conjugating_AS
ACTA2Other/UnknownnoActin, Actin_CS, Actin/actin-like_CS
RNF114Transcription factornoZnf_RING, Di19_Zn-bd, Znf_RING/FYVE/PHD
SIRAL2Other/UnknownnoFAM118
IKZF3Transcription factornoZnf_C2H2_type, Znf_C2H2_sf, Ikaros_C2H2-ZF

Expression context

Cohort genes with no expression data: 0.

70 cohort genes are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

BucketGenes
narrow (1-5 tissues)1
moderate (6-20)0
broad (>20)74
unknown0

Top tissues across cohort

TissueCohort genes
granulocyte12
lymph node9
left testis8
middle temporal gyrus6
right testis6
male germ line stem cell (sensu Vertebrata) in testis5
cartilage tissue5
gall bladder5
right lobe of liver5
monocyte5
secondary oocyte5
cortical plate4
sural nerve4
right hemisphere of cerebellum4
spleen4
stromal cell of endometrium4
blood4
oocyte4
cerebellar hemisphere3
olfactory segment of nasal mucosa3

Per-gene tissue summary (top 30)

SymbolBgee breadthFANTOM5 breadthSCXATop tissues
RGS6185broadmarkercortical plate, sural nerve, middle temporal gyrus
RORC209broadmarkergastrocnemius, male germ line stem cell (sensu Vertebrata) in testis, hindlimb stylopod muscle
RPS26140ubiquitousmarkergranulocyte, left adrenal gland cortex, mucosa of transverse colon
RPS6KA4215ubiquitousmarkerright hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex
RPS6KB1275ubiquitousmarkerendothelial cell, Brodmann (1909) area 23, calcaneal tendon
RUNX1253ubiquitousmarkerolfactory segment of nasal mucosa, epithelium of bronchus, mucosa of paranasal sinus
RUNX3220broadmarkergranulocyte, buccal mucosa cell, lymph node
CCL21206tissue_specificmarkerlymph node, right lobe of thyroid gland, vermiform appendix
XCL1131broadmarkergranulocyte, spleen, lymph node
SDC4290ubiquitousmarkerolfactory segment of nasal mucosa, nasal cavity epithelium, cartilage tissue
BRAP286ubiquitousmarkerleft testis, right testis, testis
SLIT1186broadmarkercortical plate, middle temporal gyrus, orbitofrontal cortex
SNAI1164ubiquitousmarkeromental fat pad, peritoneum, gall bladder
BSN156broadmarkerfrontal pole, paraflocculus, middle temporal gyrus
SON304ubiquitousmarkerpylorus, tendon of biceps brachii, cardia of stomach
BTD261ubiquitousmarkerislet of Langerhans, right lobe of liver, liver
SPRR1B175broadmarkeramniotic fluid, gingiva, cervix squamous epithelium
SPRR3174broadmarkerlower esophagus mucosa, oral cavity, pharyngeal mucosa
STAT2277ubiquitousmarkergranulocyte, stromal cell of endometrium, monocyte
STAT3301ubiquitousmarkertype B pancreatic cell, pericardium, lower lobe of lung
STK11238ubiquitousmarkerleft testis, right testis, hindlimb stylopod muscle
SUOX267ubiquitousmarkerright lobe of liver, right adrenal gland, right adrenal gland cortex
TARBP1290ubiquitousmarkerright hemisphere of cerebellum, right uterine tube, cerebellar hemisphere
ELOA289ubiquitousmarkerbuccal mucosa cell, lower lobe of lung, cardia of stomach
ACO1282ubiquitousmarkerright lobe of liver, liver, stromal cell of endometrium
TGM3120tissue_specificmarkerlower esophagus mucosa, esophagus mucosa, skin of leg
MYRF223ubiquitousmarkermiddle frontal gyrus, C1 segment of cervical spinal cord, inferior vagus X ganglion
TLR4233ubiquitousmarkermonocyte, mononuclear cell, leukocyte
TNFAIP3274ubiquitousmarkervena cava, mucosa of paranasal sinus, vermiform appendix
TNFRSF14134ubiquitousmarkergranulocyte, spleen, right uterine tube

Protein interactions among cohort

Intra-cohort edges: 44.

Hub genes (top 10 by interactor count)

SymbolInteractor count
STAT310,108
TLR46,974
SNAI15,518
RPS6KB15,474
TSC15,445
CAPZB5,209
STK115,146
RUNX14,994
TNFRSF1A4,523
FASLG4,373

Intra-cohort edges

ABSources
BACH2TAGAPstring_interaction
BACH2UBASH3Astring_interaction
BRAPTNFAIP3intact
CCL21XCL1biogrid_interaction, intact, string_interaction
CD40CD40LGbiogrid_interaction, intact, string_interaction
CD40FASLGstring_interaction
CD40SLC39A11intact
CD40TNFRSF9string_interaction
CD40TNFSF8string_interaction
CD40TRAF3IP2biogrid_interaction
CD40LGTNFSF8string_interaction
FASLGSKAP2intact
FASLGTNFRSF1Astring_interaction
FASLGTNFRSF6Bbiogrid_interaction, intact, string_interaction
IKBKETRAF3IP2biogrid_interaction
IKZF3RUNX1string_interaction
IKZF3RUNX3string_interaction
PRM3TNP2string_interaction
RNF114SPATA2string_interaction
RNF114TNFAIP3biogrid_interaction, intact, string_interaction
RNF114TRAF3IP2string_interaction
RPS6KB1TSC1string_interaction
RUNX1RUNX3string_interaction
SPATA2TNFRSF1Astring_interaction
SPRR3STK11intact
SPRR3TGM3string_interaction
STAT2TYK2intact, string_interaction
STAT3TYK2string_interaction
TNFAIP3TNFRSF1Abiogrid_interaction
TNFAIP3TRAF3IP2string_interaction
TNFRSF14TNFRSF6Bstring_interaction
TNFRSF14TNFSF15string_interaction
TNFRSF14TNFSF18string_interaction
TNFRSF14TNFSF8string_interaction
TNFRSF1ATNFRSF6Bstring_interaction
TNFRSF1ATNFSF15string_interaction
TNFRSF1ATNFSF8string_interaction
TNFRSF6BTNFSF15biogrid_interaction, intact, string_interaction
TNFRSF6BTNFSF8string_interaction
TNFRSF9TNFSF18string_interaction
TNFRSF9TNFSF8string_interaction
TNFSF15TNFSF18string_interaction
TNFSF15TNFSF8string_interaction
TP63UBASH3Aintact

Structural data

PDB: 49 · AlphaFold-only: 26 · No structure: 0

Cohort genes with PDB structures (top 30)

SymbolUniProtPDB entries
RPS26P62854190
RORCP51449161
TYK2P2959752
CASRP4118031
TP63Q9H3D426
RPS6KB1P2344322
UBE2L3P6803621
TNFAIP3P2158017
TLR4O0020615
IL23AQ9NPF715
CD40P2594214
TNFRSF9Q0701114
TNFRSF1AP1943813
TYRP1P1764313
B3GNT2Q9NY9712
TGM3Q0818811
SNAI1O958639
TNFRSF14Q929568
TNFRSF6BO954078
CD40LGP299658
CAPZBP477568
XCL1P479927
TNFSF15O951507
TNFSF18Q9UNG27
STAT2P526306
STAT3P407636
HDAC7Q8WUI46
RUNX1Q011965
CCL21O005855
SDC4P314315

AlphaFold-only cohort genes (top 30 by pLDDT)

SymbolUniProtpLDDT
GLYATQ6IB7795.71
ACTA2P6273695.43
EIPR1Q53HC989.26
IKBKEQ1416488.81
BTDP4325186.77
RNF114Q9Y50884.23
SIRAL2Q9NWS683.77
SLIT1O7509380.28
TNFSF8P3297180.07
CHST8Q9H2A979.90
CCHCR1Q8TD3179.52
BRAPQ7Z56976.92
SLC39A11Q8N1S576.64
ANO3Q9BYT976.30
RPS6KA4O7567672.00
SPRR1BP2252870.02
FOSL1P1540767.32
LPIN2Q9253961.12
OR2W5A6NFC960.12
TNP2Q0595259.17
KLF13Q9Y2Y958.91
PRM3Q9NNZ658.43
TAGAPQ8N10357.36
SPRR3Q9UBC952.87
IKZF3Q9UKT948.06
BSNQ9UPA5

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 748. Enrichment computed across 250 evidence-associated genes (151 with Reactome annotation).

Pathways by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 151 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

PathwayCohort genesFoldFDRSample cohort genes
TNFs bind their physiological receptors820.9×2e-06TNFRSF14, TNFRSF1A, TNFRSF6B, TNFRSF9, TNFSF15, TNFSF18, FASLG, TNFSF8
Interleukin-23 signaling433.6×0.001STAT3, TYK2, IL23A, IL23R
Regulation of TNFR1 signaling68.9×0.013TNFAIP3, TNFRSF1A, UBE2L3, IKBKE, SPATA2, CHUK
Interleukin-4 and Interleukin-13 signaling85.5×0.020RORC, STAT3, FASLG, TYK2, IL23A, IL23R, SOCS1, FOS
SARS-CoV-1 activates/modulates innate immune responses59.0×0.032RUNX1, IKBKE, IFIH1, RIGI, STING1
TNFR1-induced proapoptotic signaling411.6×0.043TNFAIP3, TNFRSF1A, IKBKE, SPATA2
Interleukin-20 family signaling411.2×0.043STAT2, STAT3, TYK2, IFNLR1
RUNX3 regulates RUNX1-mediated transcription250.4×0.048RUNX1, RUNX3
NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10317.4×0.049IFIH1, RIGI, CHUK
TRAF3-dependent IRF activation pathway315.1×0.060IKBKE, IFIH1, RIGI
TNFR1-induced NF-kappa-B signaling pathway48.9×0.060TNFAIP3, TNFRSF1A, SPATA2, CHUK
Dengue virus activates/modulates innate and adaptive immune responses48.9×0.060STAT2, IKBKE, IFIH1, STING1
Negative regulators of DDX58/IFIH1 signaling48.6×0.060TNFAIP3, IKBKE, IFIH1, RIGI
Evasion by RSV of host interferon responses48.6×0.060STAT2, TYK2, IFIH1, RIGI
SARS-CoV-2 activates/modulates innate and adaptive immune responses74.1×0.076STAT2, TYK2, IKBKE, IFIH1, RIGI, CHUK, STING1
Formation of the cornified envelope74.1×0.078SPRR1B, SPRR3, LCE3D, LIPK, LCE3A, LCE3B, LCE3E
Modulation of host responses by IFN-stimulated genes311.9×0.083IFIH1, RIGI, CHUK
Ovarian tumor domain proteases47.4×0.085TNFAIP3, TNIP1, IFIH1, RIGI
Signaling by CSF3 (G-CSF)311.3×0.086STAT3, TYK2, SOCS1
RUNX3 Regulates Immune Response and Cell Migration225.2×0.094RORC, RUNX3
Oncogenic MAPK signaling46.6×0.111BRAP, CAMK2G, SPRED2, AGK
Differentiation of naive CD4+ T cells to T helper 2 cells (Th2 cells)54.8×0.125KLF13, HDAC7, TBL1XR1, ETS1, FOS
TRAF6 mediated NF-kB activation39.1×0.137IFIH1, RIGI, CHUK
Regulation of IFNA/IFNB signaling38.7×0.141STAT2, TYK2, SOCS1
Inactivation of CSF3 (G-CSF) signaling38.7×0.141STAT3, TYK2, SOCS1
Diseases of signal transduction by growth factor receptors and second messengers83.0×0.150BRAP, STAT3, CAMK2G, CD28, CEP43, SPRED2, AGK, TBL1XR1
Defective BTD causes biotidinase deficiency175.6×0.157BTD
Defective SLC26A3 causes congenital secretory chloride diarrhea 1 (DIAR1)175.6×0.157SLC26A3
FLT3 mutants bind TKIs175.6×0.157FLT3
KW2449-resistant FLT3 mutants175.6×0.157FLT3

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 219 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO termCohort genesFoldFDRSample cohort genes
positive regulation of canonical NF-kappaB signal transduction175.6×2e-05CCL21, STAT3, TLR4, TNFRSF1A, CD40, TNFSF15, CD40LG, FASLG (+9 more)
positive regulation of interleukin-10 production712.8×5e-04XCL1, STAT3, TLR4, CD40LG, IL23A, CD28, INAVA
cell surface receptor signaling pathway via JAK-STAT810.6×5e-04STAT2, STAT3, TNFRSF1A, CD40, TYK2, IL23A, IL23R, SOCS1
positive regulation of defense response to virus by host614.4×0.001TRAF3IP2, IL23A, IL23R, RIGI, STING1, AIM2
inflammatory response193.3×0.002RPS6KA4, CCL21, XCL1, STAT3, TLR4, TNFAIP3, TNFRSF1A, CD40 (+11 more)
positive regulation of T-helper 17 type immune response425.6×0.003TYK2, IL23A, CARD9, IL23R
obsolete positive regulation of NF-kappaB transcription factor activity87.5×0.003RPS6KA4, TLR4, TNFSF18, CD40LG, CARD9, CARD14, CHUK, AIM2
positive regulation of tumor necrosis factor production96.3×0.003STAT3, TLR4, IL23A, CARD9, LRRK2, SPHK2, IFIH1, RIGI (+1 more)
positive regulation of interferon-alpha production514.8×0.003TLR4, IFIH1, RIGI, CHUK, TRIM65
positive regulation of inflammatory response96.0×0.003STAT3, TLR4, TNFRSF1A, TNFSF18, IL23A, TNIP1, NFKBIZ, ETS1 (+1 more)
T cell costimulation610.3×0.003CCL21, TNFRSF14, CD40LG, CD28, KLRK1, EFNB2
interleukin-23-mediated signaling pathway338.5×0.005STAT3, TYK2, IL23R
tumor necrosis factor-mediated signaling pathway69.1×0.005TNFRSF1A, TNFSF18, TRAF3IP2, CARD14, CHUK, AIM2
keratinization77.5×0.005SPRR1B, SPRR3, TGM3, LCE3D, LCE3A, LCE3B, LCE3E
defense response to Gram-negative bacterium86.2×0.005TLR4, TNFRSF14, IL23A, IL23R, LCE3A, LCE3B, IRGM, NFKBIZ
cytokine-mediated signaling pathway95.4×0.005STAT3, TNFRSF1A, TYK2, FOSL1, IFNLR1, IL23R, SOCS1, NFKBIZ (+1 more)
positive regulation of granulocyte macrophage colony-stimulating factor production418.1×0.005IL23A, CARD9, IL23R, RIGI
positive regulation of transcription by RNA polymerase II312.1×0.006RPS6KA4, RUNX1, XCL1, STAT2, STAT3, TLR4, TNFRSF1A, CD40 (+23 more)
regulation of type III interferon production277.0×0.014IFIH1, RIGI
CD40 signaling pathway323.1×0.015CD40, CD40LG, TRAF3IP2
fat pad development323.1×0.015CASR, TBL1XR1, FOSL2
regulation of tumor necrosis factor-mediated signaling pathway412.8×0.015TNFAIP3, TNFRSF1A, SPATA2, HIPK1
positive regulation of interferon-beta production58.9×0.015TLR4, IFIH1, RIGI, TRIM65, STING1
positive regulation of interleukin-12 production58.9×0.015TLR4, CD40, CD40LG, IL23A, IL23R
positive regulation of T cell proliferation67.1×0.015CD40LG, TYK2, IL23A, CD28, CD6, IL23R
keratinocyte differentiation66.8×0.015SPRR1B, SPRR3, TGM3, TP63, POU2F3, NFKBIZ
nucleotide-binding oligomerization domain containing 2 signaling pathway321.0×0.018TLR4, INAVA, IRGM
positive regulation of interleukin-6 production75.3×0.018STAT3, TLR4, CARD9, SPHK2, IFIH1, RIGI, INAVA
defense response to virus113.5×0.018STAT2, CD40, IKBKE, IL23A, CARD9, IFNLR1, IFIH1, RIGI (+3 more)
response to muramyl dipeptide319.2×0.020TNFAIP3, CARD9, INAVA

Therapeutics

Drugs indicated for this disease

42 approved, 20 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.

DrugDevelopment status
AcitretinApproved (phase 4)
AdalimumabApproved (phase 4)
ApremilastApproved (phase 4)
BergaptenApproved (phase 4)
Betamethasone DipropionateApproved (phase 4)
BimekizumabApproved (phase 4)
BrodalumabApproved (phase 4)
CalcipotrieneApproved (phase 4)
CalcitriolApproved (phase 4)
Clobetasol PropionateApproved (phase 4)
Coal TarApproved (phase 4)
CyclosporineApproved (phase 4)
DesoximetasoneApproved (phase 4)
DexamethasoneApproved (phase 4)
Dimethyl FumarateApproved (phase 4)
EfalizumabApproved (phase 4)
EtanerceptApproved (phase 4)
EtretinateApproved (phase 4)
Fluocinolone AcetonideApproved (phase 4)
Fumaric AcidApproved (phase 4)
GuselkumabApproved (phase 4)
Halobetasol PropionateApproved (phase 4)
HydrocortisoneApproved (phase 4)
InfliximabApproved (phase 4)
Isopropyl AlcoholApproved (phase 4)
IxekizumabApproved (phase 4)
MethotrexateApproved (phase 4)
MethoxsalenApproved (phase 4)
PrednisoloneApproved (phase 4)
PrednisoneApproved (phase 4)
RisankizumabApproved (phase 4)
RoflumilastApproved (phase 4)
Salicylic AcidApproved (phase 4)
SecukinumabApproved (phase 4)
SpesolimabApproved (phase 4)
TacalcitolApproved (phase 4)
TapinarofApproved (phase 4)
TazaroteneApproved (phase 4)
TildrakizumabApproved (phase 4)
TrioxsalenApproved (phase 4)
UstekinumabApproved (phase 4)
Zinc OxideApproved (phase 4)
AcetylcysteinePhase 3 (in late-stage trials)
AlefaceptPhase 3 (in late-stage trials)
AtorvastatinPhase 3 (in late-stage trials)
BetamethasonePhase 3 (in late-stage trials)
BriakinumabPhase 3 (in late-stage trials)
Certolizumab PegolPhase 3 (in late-stage trials)
CyanocobalaminPhase 3 (in late-stage trials)
EbdarokimabPhase 3 (in late-stage trials)
GumokimabPhase 3 (in late-stage trials)
MetforminPhase 3 (in late-stage trials)
MirikizumabPhase 3 (in late-stage trials)
MufemilastPhase 3 (in late-stage trials)
PefcalcitolPhase 3 (in late-stage trials)
PiclidenosonPhase 3 (in late-stage trials)
Tacrolimus AnhydrousPhase 3 (in late-stage trials)
TofacitinibPhase 3 (in late-stage trials)
Vitamin EPhase 3 (in late-stage trials)
VoclosporinPhase 3 (in late-stage trials)
VunakizumabPhase 3 (in late-stage trials)
ZasocitinibPhase 3 (in late-stage trials)

Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Abatacept, Abrocitinib, Alitretinoin, Baricitinib, Belumosudil, Bermekimab, Bexarotene, Brepocitinib, Cholecalciferol, Clobetasol, Crisaborole, Cromolyn, Delgocitinib, Dimethicone, Doxercalciferol, Erlotinib, Fludarabine, Fluphenazine Decanoate, Fluphenazine Enanthate, Hyaluronidase (Human Recombinant), Hypericin, Icotinib, Imsidolimab, Indigo, Itacitinib, Izokibep, Ketoconazole, Lestaurtinib, M-1095, Masitinib, Mometasone Furoate, Mycophenolate Mofetil, Niacinamide, Nortriptyline, Olive Oil, Paclitaxel, Peficitinib, Petrolatum, Pioglitazone, Ponesimod, Riboflavin, Rimegepant, Rose Bengal Free Acid, Ruxolitinib, Sitagliptin, Sodium Chloride, Teriparatide Acetate, Thalidomide, Triamcinolone, Triamcinolone Acetonide, Urea.

Drug target analysis

Approved (phase 4): 16 · Phase ≥3: 16 · Phased (≥1): 19 · Undrugged: 56

Druggability breadth: 99 of 250 evidence-associated genes (40%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Genes with an approved drug

The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.

SymbolExample approved molecule
RORCDIGOXIN
RPS26GENTAMICIN SULFATE
RPS6KA4FEDRATINIB
RPS6KB1FEDRATINIB
RUNX1APOMORPHINE HYDROCHLORIDE
SDC4BRIGATINIB
STAT3MOMELOTINIB
STK11FEDRATINIB
TLR4METHOTREXATE
TYK2FEDRATINIB
IKZF3POMALIDOMIDE
HDAC7CELECOXIB
IKBKEMOMELOTINIB
CAMK2GMOMELOTINIB
CASRCINACALCET HYDROCHLORIDE
PAK5FEDRATINIB

Top cohort targets by molecule count

SymbolMoleculesMax phase
TYK2724
RPS6KB1394
CAMK2G394
IKBKE354
RPS6KA4344
HDAC7284
STAT3184
STK11174
PAK5114
CASR104

Drugs targeting cohort genes (top 30)

MoleculeMax phaseTargets in cohort
DIGOXIN4RORC, STAT3
TRETINOIN4RORC
ALITRETINOIN4RORC
GENTAMICIN SULFATE4RPS26
FEDRATINIB4CAMK2G, IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11
RUXOLITINIB4CAMK2G, IKBKE, PAK5, RPS6KA4, TYK2
NINTEDANIB4IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11, TYK2
SUNITINIB4CAMK2G, IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11
ERLOTINIB4RPS6KA4, TYK2
MIDOSTAURIN4CAMK2G, IKBKE, RPS6KA4, RPS6KB1, STK11, TYK2
GEFITINIB4CAMK2G, RPS6KA4
SORAFENIB4RPS6KB1
VANDETANIB4RPS6KB1
BOSUTINIB4CAMK2G, IKBKE, RPS6KB1, TYK2
CRIZOTINIB4IKBKE, RPS6KB1, SDC4, TYK2
APOMORPHINE HYDROCHLORIDE4RUNX1
BRIGATINIB4CAMK2G, SDC4
MOMELOTINIB4CAMK2G, IKBKE, STAT3, TYK2
NITAZOXANIDE4STAT3
NICLOSAMIDE4STAT3
BARICITINIB4CAMK2G, STAT3, TYK2
DIGITOXIN4STAT3
DEUCRAVACITINIB4STAT3, TYK2
PACRITINIB4IKBKE, STK11, TYK2
METHOTREXATE4TLR4
POLYMYXIN B4TLR4
CARVEDILOL4TLR4
TOFACITINIB4TYK2
UPADACITINIB4TYK2
FILGOTINIB4TYK2

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 14.

Cohort genes with ChEMBL bioactivity (full, sorted by assay count)

SymbolAssaysType breakdown
HDAC71,710Binding:1695, ADMET:10, Functional:4, Toxicity:1
STAT31,319Binding:1304, Functional:12, Unclassified:2, ADMET:1
TYK21,083Binding:1043, Functional:39, ADMET:1
RORC758Binding:707, Functional:50, Unclassified:1
RPS6KB1585Binding:582, Functional:2, ADMET:1
RPS6KA4389Binding:387, Functional:1, ADMET:1
IKBKE359Binding:356, Functional:2, ADMET:1
CAMK2G291Binding:290, Functional:1
TLR4267Binding:254, Functional:10, ADMET:3
STK11244Binding:244
PAK5217Binding:217
IKZF3101Binding:100, Functional:1
RPS2689Binding:89
CASR45Functional:32, Binding:13
STAT224Binding:24
TNFRSF1A24Binding:23, Functional:1
RUNX120Binding:17, Functional:3
TGM315Binding:15
TNFRSF911Binding:11
CD4010Binding:10
CAPZB9Binding:9
CD40LG8Binding:8
SON7Binding:7
RNF1146Binding:6
BTD3Binding:3
TYRP13Binding:3
BACH23Binding:3
BRAP2Binding:2
TARBP12Binding:2
FASLG2Binding:2
UBE2L32Binding:2
SDC41Binding:1
SPRR31Binding:1
TNFAIP31Binding:1
UBASH3A1Binding:1
SLC39A111Binding:1
B3GNT21Binding:1

Cohort enzymes (BRENDA EC)

SymbolEC numbersNames
RPS6KB12.7.11.1non-specific serine/threonine protein kinase
BTD3.5.1.12biotinidase
STK112.7.11.1non-specific serine/threonine protein kinase
SUOX1.8.3.1sulfite oxidase
TARBP12.1.1.34tRNA (guanosine18-2’-O)-methyltransferase
ACO14.2.1.3aconitate hydratase
TGM32.3.2.13protein-glutamine gamma-glutamyltransferase
TYK22.7.10.2non-specific protein-tyrosine kinase
UBE2L32.3.2.23, 2.3.2.24E2 ubiquitin-conjugating enzyme, (E3-independent) E2 ubiquitin-conjugating enzyme
GLYAT2.3.1.13, 2.3.1.71glycine N-acyltransferase, glycine N-benzoyltransferase
HDAC73.5.1.98histone deacetylase
IKBKE2.7.11.10IkappaB kinase
CAMK2G2.7.11.17Ca2+/calmodulin-dependent protein kinase
PAK52.7.11.1, 2.7.12.2non-specific serine/threonine protein kinase, mitogen-activated protein kinase kinase

Cohort genes with high screening signal

≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.

SymbolChEMBL assays
RORC758
RPS6KA4389
RPS6KB1585
STAT31,319
STK11244
TLR4267
TYK21,083
IKZF3101
HDAC71,710
IKBKE359
CAMK2G291
PAK5217

Pharmacogenomics

Cohort genes with a PharmGKB record: 74; with CPIC/DPWG dosing guidelines: 0.

No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).

Chemical tractability of cohort targets

27 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

CompoundMax phaseCohort target (bioactivity)
DIGOXIN4RORC, STAT3
TRETINOIN4RORC
ALITRETINOIN4RORC
GENTAMICIN SULFATE4RPS26
FEDRATINIB4CAMK2G, IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11
NINTEDANIB4IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11, TYK2
SUNITINIB4CAMK2G, IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11
ERLOTINIB4RPS6KA4, TYK2
MIDOSTAURIN4CAMK2G, IKBKE, RPS6KA4, RPS6KB1, STK11, TYK2
GEFITINIB4CAMK2G, RPS6KA4
SORAFENIB4RPS6KB1
VANDETANIB4RPS6KB1
BOSUTINIB4CAMK2G, IKBKE, RPS6KB1, TYK2
CRIZOTINIB4IKBKE, RPS6KB1, SDC4, TYK2
APOMORPHINE HYDROCHLORIDE4RUNX1
BRIGATINIB4CAMK2G, SDC4
MOMELOTINIB4CAMK2G, IKBKE, STAT3, TYK2
NITAZOXANIDE4STAT3
NICLOSAMIDE4STAT3
BARICITINIB4CAMK2G, STAT3, TYK2
DIGITOXIN4STAT3
DEUCRAVACITINIB4STAT3, TYK2
PACRITINIB4IKBKE, STK11, TYK2
POLYMYXIN B4TLR4
CARVEDILOL4TLR4
UPADACITINIB4TYK2
FILGOTINIB4TYK2

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

TierDefinitionGenesSymbols
AApproved (phase 4 drug)16RORC, RPS26, RPS6KA4, RPS6KB1, RUNX1, SDC4, STAT3, STK11, TLR4, TYK2 (+6 more)
BPhased (≥1) drug, not yet approved3SON, TGM3, TNFRSF1A
CDruggable family + PDB, no drug6SUOX, TARBP1, ACO1, UBASH3A, UBE2L3, CSMD1
DDruggable family + AlphaFold only, no drug3BTD, GLYAT, OR2W5
EDifficult family or no structure, no drug47RGS6, RUNX3, CCL21, XCL1, BRAP, SLIT1, SNAI1, BSN, SPRR1B, SPRR3 (+37 more)

Undrugged target profiles

56 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

SymbolChEMBL assaysDrugged partners (top 3)
STAT224TYK2
TNFRSF6B0TNFRSF1A
FASLG2TNFRSF1A
RGS60
RUNX30
CCL210
XCL10
BRAP2
SLIT10
SNAI10
BSN0
BTD3
SPRR1B0
SPRR31
SUOX0
TARBP12
ELOA0
ACO10
MYRF0
TNFAIP31
TNFRSF140
CD4010
TNFRSF911
TNFSF150
TNFSF180
CD40LG8
TNFSF80
TNP20
TSC10
EIPR10

Clinical trials & evidence

Clinical trials

Clinical trials: 1,154.

Phase distribution (across all retrieved trials)

PhaseTrials
Not specified410
PHASE2188
PHASE3171
PHASE4143
PHASE1139
PHASE1/PHASE225
EARLY_PHASE115
PHASE2/PHASE39

Top trials by phase / activity

NCTPhaseStatusTitle
NCT03240809PHASE4ACTIVE_NOT_RECRUITINGAn Open-label, Single-dose Study to Evaluate Safety, Tolerability, and Pharmacokinetics of Brodalumab in Pediatric Subjects
NCT03827876PHASE4RECRUITINGEnstilar in Combination With Enbrel or Humira for Plaque Psoriasis
NCT03987763PHASE4RECRUITINGA Safety and Pharmacokinetics Study of IDP-122 Lotion in Pediatric Participants With Plaque Psoriasis
NCT04119102PHASE4RECRUITINGDuobrii in Combination With Biologics
NCT04347473PHASE4RECRUITINGILUMYA in Combination With HALOG Ointment 0.1% for Plaque Psoriasis.
NCT04372277PHASE4RECRUITINGTaltz in Combination With Enstilar for Psoriasis
NCT05004727PHASE4RECRUITINGMulti-Center PAMPA Study
NCT05185258PHASE4ACTIVE_NOT_RECRUITINGResidual Disease MEMory in PSOriasis Skin During EnstiLAR® and Narrow-band Ultraviolet B Therapy: The MEMPSOLAR Study
NCT05270733PHASE4RECRUITINGDevelopment of Predictive Psoriasis Response Endotypes Using Single Cell Transcriptomics
NCT06857942PHASE4RECRUITINGA Study to Investigate the Effectiveness of Tirzepatide (LY3298176) Following Initiation of Ixekizumab (LY2439821) in Participants With Moderate-to-Severe Plaque PsO and Obesity or Overweight in Clinical Practice (TOGETHER AMPLIFY-PsO)
NCT07149792PHASE4RECRUITINGA Multi-center RCT Clinical Trial on Personalized Precision Medicine for Patients With Psoriasis and Psoriatic Arthritis and Investigation on Cardiovascular Biomarkers
NCT07352566PHASE4NOT_YET_RECRUITINGUtilization of a Microdevice for Psoriasis and Atopic Dermatitis
NCT07401992PHASE4RECRUITINGEffects of Semaglutide on Clinical Outcomes and Metabolic Inflammation in Psoriasis
NCT07432386PHASE4NOT_YET_RECRUITINGMethotrexate Versus Apremilast for Pruritus in Psoriasis
NCT07432815PHASE4RECRUITINGTreatment of Psoriasis With Depression and/or Anxiety With Methotrexate vs Combined Methotrexate and Antidepressant
NCT07485764PHASE4NOT_YET_RECRUITINGMetformin Combined With Secukinumab for Moderate-to-Severe Plaque Psoriasis in Overweight or Obese Chinese Patients
NCT07487831PHASE4NOT_YET_RECRUITINGThe Impact of Salt Intake on Sodium in the Skin and Inflammatory Skin Disease
NCT00096980PHASE4COMPLETEDA Study to Evaluate Raptiva in Combination With Topical Psoriasis Therapies
NCT00110981PHASE4COMPLETEDUtilization of Narrow Band Ultraviolet B (UVB) Light Therapy and Etanercept for the Treatment of Psoriasis
NCT00111124PHASE4COMPLETEDEnbrel® in Psoriatic Arthritis
NCT00150930PHASE4UNKNOWNHome UVB Phototherapy for Psoriasis: Effectiveness, Quality of Life and Cost-Effectiveness
NCT00161655PHASE4COMPLETEDStudy Evaluating Etanercept and Methotrexate in Plaque Psoriasis
NCT00195507PHASE4COMPLETEDStudy Evaluating Etanercept in the Treatment of Subjects With Psoriasis
NCT00249808PHASE4COMPLETEDA Study of Efalizumab in Participants With Moderate to Severe Chronic Psoriasis Who Have Failed, Have a Contraindication to, or Are Intolerant of Other Systemic Therapies
NCT00287118PHASE4COMPLETEDA Multicentre, Open Label Phase IIIb/IV Study of Subcutaneously Administered Raptiva in the Treatment of Adult Subjects With Moderate to Severe Plaque Psoriasis
NCT00312026PHASE4COMPLETEDA Study to Evaluate the Safety and Efficacy of Efalizumab in Adult Patients With Plaque Psoriasis Involving the Hands and/or Feet
NCT00332332PHASE4COMPLETEDCanadian Assessment of Patient Outcomes and Effectiveness of Etanercept (Enbrel) in Psoriasis
NCT00336973PHASE4COMPLETEDA Study to Evaluate Raptiva in Subjects With Chronic Moderate or Worse Plaque Psoriasis Who Have Had an Inadequate Response to an Anti-TNF Agent
NCT00436540PHASE4COMPLETEDA Comparison Between Clobetasol Propionate 0.05% (Clobex®) Spray and Clobetasol Propionate 0.05% (Olux®) Foam
NCT00437619PHASE4COMPLETEDA Study of Sequential Treatment With Daivobet (Betamethasone Dipropionate Plus Calcipotriol) and Daivonex (Calcipotriol) in Patients With Psoriasis.
NCT00462072PHASE4COMPLETEDCentocor Microarray Study of Patients
NCT00581165PHASE4COMPLETEDStudy Evaluating Safety of Etanercept in Treatment of Patients With Moderate to Severe Psoriasiswith Etanercept
NCT00581555PHASE4COMPLETEDEvaluation of Etanercept in Patients With Plaque Psoriasis After Stopping Ciclosporin Therapy
NCT00655564PHASE4COMPLETEDLong-Term One Year Use of Alefacept (Amevive®) in Moderate to Severe Chronic Plaque Type Psoriasis
NCT00663052PHASE4COMPLETEDStudy Evaluating Etanercept for the Treatment of Moderate to Severe Psoriasis
NCT00669123PHASE4COMPLETEDChondroitin Sulphate Efficay/Safety in Patients With Knee Osteoarthritis and Psoriasis
NCT00669214PHASE4COMPLETEDA Study to Evaluate the Safety and Efficacy of Efalizumab in Adult Patients With Moderate to Severe Plaque Psoriasis With Involvement of the Scalp
NCT00686595PHASE4COMPLETEDA Study to Evaluate the Switch From Etanercept to Infliximab in Subjects With Moderate-to-Severe Psoriasis (Study P05133)
NCT00697034PHASE4TERMINATEDEffects of Capsaicin on the Structure, Distribution, and Function of Cutaneous Small Nerve Fibers in Psoriatic Skin
NCT00723437PHASE4COMPLETEDEvaluation of the Efficacy of Acitretin Therapy for Nail Psoriasis

Drugs tested across these trials (top 30)

MoleculeMax phaseTrials referencing
ETANERCEPT454
CRAVACITINIB438
CALCIPOTRIENE428
APREMILAST426
RISANKIZUMAB426
TOFACITINIB425
USTEKINUMAB423
GUSELKUMAB420
SECUKINUMAB420
BRODALUMAB416
CLOBETASOL PROPIONATE413
ACITRETIN411
EFALIZUMAB411
IXEKIZUMAB411
ADALIMUMAB49
TAPINAROF49
INFLIXIMAB48
METHOTREXATE47
ALEFACEPT46
HALOBETASOL PROPIONATE46
CALCITRIOL45
DESOXIMETASONE45
RUXOLITINIB45
TILDRAKIZUMAB45
CRISABOROLE44
MIRIKIZUMAB44
ROFLUMILAST44
BETAMETHASONE VALERATE43
BIMEKIZUMAB43
CERTOLIZUMAB PEGOL43