Psoriasis
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Summary
Psoriasis (MONDO:0005083) is a disease with 75 cohort genes (1,921 GWAS associations across 87 studies) and 1,154 clinical trials. The dominant Reactome pathway is TNFs bind their physiological receptors (8 cohort genes). Top therapeutic interventions include etanercept, cravacitinib, and calcipotriene.
At a glance
- Cohort genes: 75
- GWAS associations: 1,921
- ClinVar variants: 2
- Clinical trials: 1,154
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | psoriasis |
| Mondo ID | MONDO:0005083 |
| EFO | EFO:0000676 |
| MeSH | D011565 |
| OMIM | 177900 |
| DOID | DOID:8893 |
| ICD-10-CM | L40 |
| ICD-11 | 63698555 |
| NCIT | C3346 |
| SNOMED CT | 9014002 |
| UMLS | C0033860 |
| MedGen | 10997 |
| Is cancer (heuristic) | no |
Data availability: 2 ClinVar variants · 1,921 GWAS associations (87 studies) · 9 cell lines.
Disease family
An umbrella term covering 3 Mondo subtypes.
Classification path: disease › human disease › disease by body system or component › integumentary system disorder › skin disorder › dermatitis › psoriasis
Related subtypes (32): spongiotic dermatitis, atopic eczema, contact dermatitis, urticaria, acneiform dermatitis, acrodermatitis, folliculitis, granuloma annulare, granulomatous dermatitis, lichen planus, neurodermatitis, neurotic excoriation, parapsoriasis, pityriasis rosea, seborrheic dermatitis, acanthosis nigricans, dermatosis papulosa nigra, lichen sclerosus et atrophicus, vitiligo, acne, porphyria cutanea tarda, dermatomyositis, acute generalized exanthematous pustulosis, hydroa vacciniforme, autoimmune bullous skin disease, cutaneous vasculitis, skin infection, intertrigo, lipodermatosclerosis, exfoliative dermatitis, radiodermatitis, food dermatitis
Subtypes (3): psoriasis 2, pustular psoriasis, guttate psoriasis
Genetics & variants
GWAS landscape
1,921 GWAS associations across 87 studies. Top hits map to 27 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs5743293 | 1e-320 | NOD2, CYLD-AS1 | ? | |
| rs10484554 | 2e-302 | LINC02571 - HLA-B | T | 1.67 |
| rs13214872 | 2e-302 | RPL3P2 - WASF5P | G | 1.67 |
| rs1265181 | 2e-208 | PSORS1C3 - HCG27 | ? | 22.62 |
| rs80174646 | 1e-143 | IL23R | ? | |
| rs12191877 | 1e-100 | RPL3P2 - WASF5P | T | 2.64 |
| rs7517847 | 1e-98 | IL23R, C1orf141 | ? | |
| rs2066845 | 6e-94 | NOD2 | ? | |
| chr5: 158829527 | 3e-84 | A | 0.53 | |
| rs1992661 | 1e-74 | RNU1-150P - TTC33 | ? | |
| rs35300242 | 5e-67 | ATG16L1 | ? | |
| rs35198068 | 5e-65 | TCF7L2 | C | 1.21 |
| rs6426833 | 7e-62 | RNF186-AS1 - OTUD3 | ? | |
| chr5: 150469973 | 1e-58 | A | 0.49 | |
| rs12188300 | 2e-56 | IL12B-AS1 | T | 1.31 |
| rs17622378 | 2e-55 | IRF1, CARINH | ? | |
| rs3197999 | 7e-55 | MST1 | ? | |
| rs9977672 | 5e-54 | LINC02940 - RPL23AP12 | ? | |
| rs469758 | 6e-54 | ERAP1 | ? | |
| rs35960711 | 4e-53 | SCRN1 | G | 1.58 |
| rs4672505 | 2e-52 | RN7SL51P - RN7SL18P | ? | |
| rs10748781 | 6e-51 | LINC01475 | ? | |
| rs62377586 | 3e-50 | IL12B-AS1 | G | 1.18 |
| rs1634774 | 7e-49 | LINC02571 - HLA-B | ? | 0.48 |
| rs10995271 | 3e-48 | LINC02929 - ALDH7A1P4 | ? | |
| rs2357623 | 4e-48 | NKD1 - SNX20 | ? | |
| rs9368611 | 2e-46 | HLA-F-AS1 | ? | 0.64 |
| rs9380151 | 3e-46 | POLR1HASP, POLR1HASP | ? | 0.62 |
| rs33980500 | 4e-45 | TRAF3IP2-AS1, TRAF3IP2 | T | 1.52 |
| rs10870077 | 6e-45 | CARD9 | ? |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST90019016 | Stuart PE | 2021 | 15,967 | 28,194 | Transethnic analysis of psoriasis susceptibility in South Asians and Europeans enhances fine-mapping in the MHC and genomewide. |
| GCST90019017 | Stuart PE | 2021 | 15,967 | 28,194 | Transethnic analysis of psoriasis susceptibility in South Asians and Europeans enhances fine-mapping in the MHC and genomewide. |
| GCST005321 | Broce I | 2018 | 12,577 | 23,475 | Immune-related genetic enrichment in frontotemporal dementia: An analysis of genome-wide association studies. |
| GCST004346 | Tsoi LC | 2017 | 11,988 | 275,335 | Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants. |
| GCST008479 | Zuo X | 2015 | 11,245 | 11,177 | Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis. |
| GCST90244705 | Patrick MT | 2022 | 11,024 | 139,840 | Shared genetic risk factors and causal association between psoriasis and coronary artery disease. |
| GCST011990 | Patrick MT | 2020 | 11,024 | 840,342 | Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis. |
| GCST011991 | Patrick MT | 2020 | 11,024 | 840,342 | Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis. |
| GCST011109 | Yang C | 2019 | 10,668 | 10,679 | Exome-Wide Rare Loss-of-Function Variant Enrichment Study of 21,347 Han Chinese Individuals Identifies Four Susceptibility Genes for Psoriasis. |
| GCST005527 | Tsoi LC | 2012 | 10,588 | 22,806 | Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 5 |
| Tier 2: splice/UTR | 0 |
| Tier 3: regulatory | 3 |
| Tier 4: intronic/intergenic | 42 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 40 |
| low_freq (0.01-0.05) | 0 |
| rare (<0.01) | 0 |
| unknown | 10 |
Functional consequences
| Consequence | Count |
|---|---|
| intron_variant | 22 |
| intergenic_variant | 14 |
| unknown | 5 |
| missense_variant | 4 |
| regulatory_region_variant | 2 |
| frameshift_variant | 1 |
| TF_binding_site_variant | 1 |
| non_coding_transcript_exon_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| chr6: 30916259 | Tier 4: intronic/intergenic | |||||||
| rs4406273 | 6 | 31298313 | G>A,T | 0.092 | intron_variant | LINC02571 | Tier 4: intronic/intergenic | |
| rs5743293 | 16 | 50729868 | frameshift_variant | NOD2, CYLD-AS1 | 1e-320 | Tier 1: coding | ||
| rs10484554 | 6 | 31306778 | C>T | 0.05 | intron_variant | LINC02571 - HLA-B | 2e-302 | Tier 4: intronic/intergenic |
| rs13214872 | 6 | 31287231 | C>G | 0.05 | intron_variant | RPL3P2 - WASF5P | 2e-302 | Tier 4: intronic/intergenic |
| rs1265181 | 6 | 31188008 | G>C | 0.05 | intron_variant | PSORS1C3 - HCG27 | 2e-208 | Tier 4: intronic/intergenic |
| rs80174646 | 1 | 67242472 | G>T | 0.05 | intron_variant | IL23R | 1e-143 | Tier 4: intronic/intergenic |
| rs12191877 | 6 | 31285148 | C>T | 0.15 | intron_variant | RPL3P2 - WASF5P | 1e-100 | Tier 4: intronic/intergenic |
| rs7517847 | 1 | 67215986 | T>A,C,G | 0.05 | intron_variant | IL23R, C1orf141 | 1e-98 | Tier 4: intronic/intergenic |
| rs2066845 | 16 | 50722629 | G>C,T | missense_variant | NOD2 | 6e-94 | Tier 1: coding | |
| chr5: 158829527 | 3e-84 | Tier 4: intronic/intergenic | ||||||
| rs1992661 | 5 | 40414887 | G>A | 0.05 | intron_variant | RNU1-150P - TTC33 | 1e-74 | Tier 4: intronic/intergenic |
| rs35300242 | 2 | 233260144 | G>A,C | 0.05 | intron_variant | ATG16L1 | 5e-67 | Tier 4: intronic/intergenic |
| rs35198068 | 10 | 112995025 | T>C | 0.05 | intron_variant | TCF7L2 | 5e-65 | Tier 4: intronic/intergenic |
| rs6426833 | 1 | 19845367 | G>A,C,T | 0.05 | TF_binding_site_variant | RNF186-AS1 - OTUD3 | 7e-62 | Tier 3: regulatory |
| chr5: 150469973 | 1e-58 | Tier 4: intronic/intergenic | ||||||
| rs12188300 | 5 | 159402519 | A>G,T | 0.05 | intergenic_variant | IL12B-AS1 | 2e-56 | Tier 4: intronic/intergenic |
| rs17622378 | 5 | 132442760 | A>G | 0.05 | intron_variant | IRF1, CARINH | 2e-55 | Tier 4: intronic/intergenic |
| rs3197999 | 3 | 49684099 | G>A,C,T | 0.05 | missense_variant | MST1 | 7e-55 | Tier 1: coding |
| rs9977672 | 21 | 39091357 | G>A | 0.05 | intergenic_variant | LINC02940 - RPL23AP12 | 5e-54 | Tier 4: intronic/intergenic |
| rs469758 | 5 | 96786011 | C>T | 0.05 | intron_variant | ERAP1 | 6e-54 | Tier 4: intronic/intergenic |
| rs35960711 | 7 | 29940855 | C>A,T | 0.05 | missense_variant | SCRN1 | 4e-53 | Tier 1: coding |
| rs4672505 | 2 | 62333197 | A>C,G,T | 0.05 | intron_variant | RN7SL51P - RN7SL18P | 2e-52 | Tier 4: intronic/intergenic |
| rs10748781 | 10 | 99523573 | C>A,G | 0.05 | non_coding_transcript_exon_variant | LINC01475 | 6e-51 | Tier 4: intronic/intergenic |
| rs62377586 | 5 | 159339014 | G>A | 0.05 | intergenic_variant | IL12B-AS1 | 3e-50 | Tier 4: intronic/intergenic |
| rs1634774 | 6 | 31335498 | A>G | 0.05 | intron_variant | LINC02571 - HLA-B | 7e-49 | Tier 4: intronic/intergenic |
| rs10995271 | 10 | 62678726 | G>A,C | 0.05 | intergenic_variant | LINC02929 - ALDH7A1P4 | 3e-48 | Tier 4: intronic/intergenic |
| rs2357623 | 16 | 50660100 | A>G,T | 0.05 | intergenic_variant | NKD1 - SNX20 | 4e-48 | Tier 4: intronic/intergenic |
| rs9368611 | 6 | 29772040 | A>C | intron_variant | HLA-F-AS1 | 2e-46 | Tier 4: intronic/intergenic | |
| rs9380151 | 6 | 30052051 | T>C | 0.05 | intron_variant | POLR1HASP, POLR1HASP | 3e-46 | Tier 4: intronic/intergenic |
ClinVar germline variants
2 retrieved; paginated sample, class counts are floors:
1 likely pathogenic, 1 benign/likely benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1691222 | NM_014339.7(IL17RA):c.1173C>G (p.Tyr391Ter) | IL17RA | Likely pathogenic | no assertion criteria provided |
| 97813 | NM_001375808.2(LPIN2):c.1159A>G (p.Lys387Glu) | LPIN2 | Benign/Likely benign | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 63 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| RORC | Orphanet:477857 | Mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiency |
| RPS26 | Orphanet:124 | Diamond-Blackfan anemia |
| RUNX1 | Orphanet:102724 | Acute myeloid leukemia with t(8;21)(q22;q22) translocation |
| RUNX1 | Orphanet:521 | Chronic myeloid leukemia |
| RUNX1 | Orphanet:71290 | Familial platelet disorder with associated myeloid malignancy |
| RUNX1 | Orphanet:98850 | Aggressive systemic mastocytosis |
| SON | Orphanet:500150 | ZTTK syndrome |
| BTD | Orphanet:79241 | Biotinidase deficiency |
| STAT2 | Orphanet:431166 | Primary immunodeficiency with post-measles-mumps-rubella vaccine viral infection |
| STAT3 | Orphanet:2314 | Autosomal dominant hyper-IgE syndrome due to STAT3 deficiency |
| STAT3 | Orphanet:438159 | STAT3-related early-onset multisystem autoimmune disease |
| STAT3 | Orphanet:512017 | Chronic lymphoproliferative disorder of natural killer cells |
| STAT3 | Orphanet:520 | Acute promyelocytic leukemia |
| STAT3 | Orphanet:667662 | Breast implant-associated anaplastic large cell lymphoma |
| STAT3 | Orphanet:86872 | T-cell large granular lymphocyte leukemia |
| STAT3 | Orphanet:99885 | Isolated permanent neonatal diabetes mellitus |
| STK11 | Orphanet:2869 | Peutz-Jeghers syndrome |
| SUOX | Orphanet:99731 | Isolated sulfite oxidase deficiency |
| TGM3 | Orphanet:1410 | Uncombable hair syndrome |
| MYRF | Orphanet:647811 | Cardiac-urogenital syndrome |
| TLR4 | Orphanet:117 | Behçet disease |
| TNFAIP3 | Orphanet:536 | Systemic lupus erythematosus |
| TNFAIP3 | Orphanet:674762 | Early-onset autoinflammatory syndrome due to A20 haploinsufficiency |
| TNFRSF1A | Orphanet:32960 | Tumor necrosis factor receptor 1 associated periodic syndrome |
| TNFRSF1A | Orphanet:329967 | Intermittent hydrarthrosis |
| CD40 | Orphanet:101090 | Hyper-IgM syndrome type 3 |
| TNFRSF9 | Orphanet:664726 | EBV-induced lymphoproliferative disease due to CD137 deficiency |
| TNFSF15 | Orphanet:186 | Primary biliary cholangitis |
| CD40LG | Orphanet:101088 | X-linked hyper-IgM syndrome |
| FASLG | Orphanet:3261 | Autoimmune lymphoproliferative syndrome |
| TSC1 | Orphanet:210159 | Adult hepatocellular carcinoma |
| TSC1 | Orphanet:269008 | Isolated focal cortical dysplasia type IIb |
| TSC1 | Orphanet:538 | Lymphangioleiomyomatosis |
| TSC1 | Orphanet:805 | Tuberous sclerosis complex |
| TYK2 | Orphanet:300865 | Primary cutaneous anaplastic large cell lymphoma |
| TYK2 | Orphanet:331226 | Susceptibility to infection due to TYK2 deficiency |
| TYK2 | Orphanet:98842 | Lymphomatoid papulosis |
| TYRP1 | Orphanet:79433 | Oculocutaneous albinism type 3 |
| UBE2L3 | Orphanet:536 | Systemic lupus erythematosus |
| ACTA2 | Orphanet:2573 | Moyamoya disease |
| ACTA2 | Orphanet:404463 | Multisystemic smooth muscle dysfunction syndrome |
| ACTA2 | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| IKZF3 | Orphanet:67038 | B-cell chronic lymphocytic leukemia |
| IKZF3 | Orphanet:699590 | Immune dysregulation with immunodeficiency due to AIOLOS haploinsufficiency |
| IKZF3 | Orphanet:699593 | Combined immunodeficiency-lymphopenia-cancer predisposing syndrome due to AIOLOS deficiency |
| TRAF3IP2 | Orphanet:1334 | Chronic mucocutaneous candidiasis |
| ANO3 | Orphanet:420485 | Cranio-cervical dystonia with laryngeal and upper-limb involvement |
| BACH2 | Orphanet:714472 | Inflammatory bowel disease-autoimmunity-sinopulmonary infections-lymphadenopathy syndrome |
| LPIN2 | Orphanet:77297 | Majeed syndrome |
| CASR | Orphanet:417 | Neonatal severe primary hyperparathyroidism |
Cohort genes → proteins
75 cohort genes, 75 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 74 |
| multi_evidence | 1 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| RGS6 | HGNC:10002 | ENSG00000182732 | P49758 | Regulator of G-protein signaling 6 | gwas |
| RORC | HGNC:10260 | ENSG00000143365 | P51449 | Nuclear receptor ROR-gamma | gwas |
| RPS26 | HGNC:10414 | ENSG00000197728 | P62854 | Small ribosomal subunit protein eS26 | gwas |
| RPS6KA4 | HGNC:10433 | ENSG00000162302 | O75676 | Ribosomal protein S6 kinase alpha-4 | gwas |
| RPS6KB1 | HGNC:10436 | ENSG00000108443 | P23443 | Ribosomal protein S6 kinase beta-1 | gwas |
| RUNX1 | HGNC:10471 | ENSG00000159216 | Q01196 | Runt-related transcription factor 1 | gwas |
| RUNX3 | HGNC:10473 | ENSG00000020633 | Q13761 | Runt-related transcription factor 3 | gwas |
| CCL21 | HGNC:10620 | ENSG00000137077 | O00585 | C-C motif chemokine 21 | gwas |
| XCL1 | HGNC:10645 | ENSG00000143184 | P47992 | Lymphotactin | gwas |
| SDC4 | HGNC:10661 | ENSG00000124145 | P31431 | Syndecan-4 | gwas |
| BRAP | HGNC:1099 | ENSG00000089234 | Q7Z569 | BRCA1-associated protein | gwas |
| SLIT1 | HGNC:11085 | ENSG00000187122 | O75093 | Slit homolog 1 protein | gwas |
| SNAI1 | HGNC:11128 | ENSG00000124216 | O95863 | Zinc finger protein SNAI1 | gwas |
| BSN | HGNC:1117 | ENSG00000164061 | Q9UPA5 | Protein bassoon | gwas |
| SON | HGNC:11183 | ENSG00000159140 | P18583 | Protein SON | gwas |
| BTD | HGNC:1122 | ENSG00000169814 | P43251 | Biotinidase | gwas |
| SPRR1B | HGNC:11260 | ENSG00000169469 | P22528 | Cornifin-B | gwas |
| SPRR3 | HGNC:11268 | ENSG00000163209 | Q9UBC9 | Small proline-rich protein 3 | gwas |
| STAT2 | HGNC:11363 | ENSG00000170581 | P52630 | Signal transducer and activator of transcription 2 | gwas |
| STAT3 | HGNC:11364 | ENSG00000168610 | P40763 | Signal transducer and activator of transcription 3 | gwas |
| STK11 | HGNC:11389 | ENSG00000118046 | Q15831 | Serine/threonine-protein kinase STK11 | gwas |
| SUOX | HGNC:11460 | ENSG00000139531 | P51687 | Sulfite oxidase, mitochondrial | gwas |
| TARBP1 | HGNC:11568 | ENSG00000059588 | Q13395 | tRNA (guanosine(18)-2’-O)-methyltransferase TARBP1 | gwas |
| ELOA | HGNC:11620 | ENSG00000011007 | Q14241 | Elongin-A | gwas |
| ACO1 | HGNC:117 | ENSG00000122729 | P21399 | Cytoplasmic aconitate hydratase | gwas |
| TGM3 | HGNC:11779 | ENSG00000125780 | Q08188 | Protein-glutamine gamma-glutamyltransferase E | gwas |
| MYRF | HGNC:1181 | ENSG00000124920 | Q9Y2G1 | Myelin regulatory factor | gwas |
| TLR4 | HGNC:11850 | ENSG00000136869 | O00206 | Toll-like receptor 4 | gwas |
| TNFAIP3 | HGNC:11896 | ENSG00000118503 | P21580 | Tumor necrosis factor alpha-induced protein 3 | gwas |
| TNFRSF14 | HGNC:11912 | ENSG00000157873 | Q92956 | Tumor necrosis factor receptor superfamily member 14 | gwas |
| TNFRSF1A | HGNC:11916 | ENSG00000067182 | P19438 | Tumor necrosis factor receptor superfamily member 1A | gwas |
| CD40 | HGNC:11919 | ENSG00000101017 | P25942 | Tumor necrosis factor receptor superfamily member 5 | gwas |
| TNFRSF6B | HGNC:11921 | ENSG00000243509 | O95407 | Tumor necrosis factor receptor superfamily member 6B | gwas |
| TNFRSF9 | HGNC:11924 | ENSG00000049249 | Q07011 | Tumor necrosis factor receptor superfamily member 9 | gwas |
| TNFSF15 | HGNC:11931 | ENSG00000181634 | O95150 | Tumor necrosis factor ligand superfamily member 15 | gwas |
| TNFSF18 | HGNC:11932 | ENSG00000120337 | Q9UNG2 | Tumor necrosis factor ligand superfamily member 18 | gwas |
| CD40LG | HGNC:11935 | ENSG00000102245 | P29965 | CD40 ligand | gwas |
| FASLG | HGNC:11936 | ENSG00000117560 | P48023 | Tumor necrosis factor ligand superfamily member 6 | gwas |
| TNFSF8 | HGNC:11938 | ENSG00000106952 | P32971 | Tumor necrosis factor ligand superfamily member 8 | gwas |
| TNP2 | HGNC:11952 | ENSG00000178279 | Q05952 | Nuclear transition protein 2 | gwas |
| TSC1 | HGNC:12362 | ENSG00000165699 | Q92574 | Hamartin | gwas |
| EIPR1 | HGNC:12383 | ENSG00000032389 | Q53HC9 | EARP and GARP complex-interacting protein 1 | gwas |
| TYK2 | HGNC:12440 | ENSG00000105397 | P29597 | Non-receptor tyrosine-protein kinase TYK2 | gwas |
| TYRP1 | HGNC:12450 | ENSG00000107165 | P17643 | 5,6-dihydroxyindole-2-carboxylic acid oxidase | gwas |
| UBASH3A | HGNC:12462 | ENSG00000160185 | P57075 | Ubiquitin-associated and SH3 domain-containing protein A | gwas |
| UBE2L3 | HGNC:12488 | ENSG00000185651 | P68036 | Ubiquitin-conjugating enzyme E2 L3 | gwas |
| ACTA2 | HGNC:130 | ENSG00000107796 | P62736 | Actin, aortic smooth muscle | gwas |
| RNF114 | HGNC:13094 | ENSG00000124226 | Q9Y508 | E3 ubiquitin-protein ligase RNF114 | gwas |
| SIRAL2 | HGNC:1313 | ENSG00000100376 | Q9NWS6 | Protein FAM118A | gwas |
| IKZF3 | HGNC:13178 | ENSG00000161405 | Q9UKT9 | Zinc finger protein Aiolos | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| RGS6 | Regulator of G-protein signaling 6 | Regulates G protein-coupled receptor signaling cascades. |
| RORC | Nuclear receptor ROR-gamma | Nuclear receptor that binds DNA as a monomer to ROR response elements (RORE) containing a single core motif half-site 5’-AGGTCA-3’ preceded by a short A-T-rich sequence. |
| RPS26 | Small ribosomal subunit protein eS26 | Component of the small ribosomal subunit. |
| RPS6KA4 | Ribosomal protein S6 kinase alpha-4 | Serine/threonine-protein kinase that is required for the mitogen or stress-induced phosphorylation of the transcription factors CREB1 and ATF1 and for the regulation of the transcription factor RELA, and that contributes to gene activation… |
| RPS6KB1 | Ribosomal protein S6 kinase beta-1 | Serine/threonine-protein kinase that acts downstream of mTOR signaling in response to growth factors and nutrients to promote cell proliferation, cell growth and cell cycle progression. |
| RUNX1 | Runt-related transcription factor 1 | Forms the heterodimeric complex core-binding factor (CBF) with CBFB. |
| RUNX3 | Runt-related transcription factor 3 | Forms the heterodimeric complex core-binding factor (CBF) with CBFB. |
| CCL21 | C-C motif chemokine 21 | Inhibits hemopoiesis and stimulates chemotaxis. |
| XCL1 | Lymphotactin | Chemotactic activity for lymphocytes but not for monocytes or neutrophils. |
| SDC4 | Syndecan-4 | Cell surface proteoglycan which regulates exosome biogenesis in concert with SDCBP and PDCD6IP. |
| BRAP | BRCA1-associated protein | Negatively regulates MAP kinase activation by limiting the formation of Raf/MEK complexes probably by inactivation of the KSR1 scaffold protein. |
| SLIT1 | Slit homolog 1 protein | Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. |
| SNAI1 | Zinc finger protein SNAI1 | Involved in induction of the epithelial to mesenchymal transition (EMT), formation and maintenance of embryonic mesoderm, growth arrest, survival and cell migration. |
| BSN | Protein bassoon | Scaffold protein of the presynaptic cytomatrix at the active zone (CAZ) which is the place in the synapse where neurotransmitter is released. |
| SON | Protein SON | RNA-binding protein that acts as a mRNA splicing cofactor by promoting efficient splicing of transcripts that possess weak splice sites. |
| BTD | Biotinidase | Catalytic release of biotin from biocytin, the product of biotin-dependent carboxylases degradation. |
| SPRR1B | Cornifin-B | Cross-linked envelope protein of keratinocytes. |
| SPRR3 | Small proline-rich protein 3 | Cross-linked envelope protein of keratinocytes. |
| STAT2 | Signal transducer and activator of transcription 2 | Signal transducer and activator of transcription that mediates signaling by type I interferons (IFN-alpha and IFN-beta). |
| STAT3 | Signal transducer and activator of transcription 3 | Signal transducer and transcription activator that mediates cellular responses to interleukins, KITLG/SCF, LEP and other growth factors. |
| STK11 | Serine/threonine-protein kinase STK11 | Tumor suppressor serine/threonine-protein kinase that controls the activity of AMP-activated protein kinase (AMPK) family members, thereby playing a role in various processes such as cell metabolism, cell polarity, apoptosis and DNA damage… |
| SUOX | Sulfite oxidase, mitochondrial | Catalyzes the oxidation of sulfite to sulfate, the terminal reaction in the oxidative degradation of sulfur-containing amino acids. |
| TARBP1 | tRNA (guanosine(18)-2’-O)-methyltransferase TARBP1 | S-adenosyl-L-methionine-dependent 2’-O-ribose methyltransferase that catalyzes the formation of 2’-O-methylguanosine at position 18 (Gm18) in a subset of tRNA. |
| ELOA | Elongin-A | SIII, also known as elongin, is a general transcription elongation factor that increases the RNA polymerase II transcription elongation past template-encoded arresting sites. |
| ACO1 | Cytoplasmic aconitate hydratase | Bifunctional iron sensor that switches between 2 activities depending on iron availability. |
| TGM3 | Protein-glutamine gamma-glutamyltransferase E | Catalyzes the calcium-dependent formation of isopeptide cross-links between glutamine and lysine residues in various proteins, as well as the conjugation of polyamines to proteins. |
| MYRF | Myelin regulatory factor | Constitutes a precursor of the transcription factor. |
| TLR4 | Toll-like receptor 4 | Transmembrane receptor that functions as a pattern recognition receptor recognizing pathogen- and damage-associated molecular patterns (PAMPs and DAMPs) to induce innate immune responses via downstream signaling pathways. |
| TNFAIP3 | Tumor necrosis factor alpha-induced protein 3 | Ubiquitin-editing enzyme that contains both ubiquitin ligase and deubiquitinase activities. |
| TNFRSF14 | Tumor necrosis factor receptor superfamily member 14 | Receptor for four distinct ligands: The TNF superfamily members TNFSF14/LIGHT and homotrimeric LTA/lymphotoxin-alpha and the immunoglobulin superfamily members BTLA and CD160, altogether defining a complex stimulatory and inhibitory signal… |
| TNFRSF1A | Tumor necrosis factor receptor superfamily member 1A | Receptor for TNFSF2/TNF and homotrimeric TNFSF1/lymphotoxin-alpha. |
| CD40 | Tumor necrosis factor receptor superfamily member 5 | Receptor for TNFSF5/CD40LG. |
| TNFRSF6B | Tumor necrosis factor receptor superfamily member 6B | Decoy receptor that can neutralize the cytotoxic ligands TNFS14/LIGHT, TNFSF15 and TNFSF6/FASL. |
| TNFRSF9 | Tumor necrosis factor receptor superfamily member 9 | Receptor for TNFSF9/4-1BBL. |
| TNFSF15 | Tumor necrosis factor ligand superfamily member 15 | Receptor for TNFRSF25 and TNFRSF6B. |
| TNFSF18 | Tumor necrosis factor ligand superfamily member 18 | Cytokine that binds to TNFRSF18/AITR/GITR. |
| CD40LG | CD40 ligand | Cytokine that acts as a ligand to CD40/TNFRSF5. |
| FASLG | Tumor necrosis factor ligand superfamily member 6 | Cytokine that binds to TNFRSF6/FAS, a receptor that transduces the apoptotic signal into cells. |
| TNFSF8 | Tumor necrosis factor ligand superfamily member 8 | Cytokine that binds to TNFRSF8/CD30. |
| TNP2 | Nuclear transition protein 2 | Plays a key role in the replacement of histones to protamine in the elongating spermatids of mammals. |
| TSC1 | Hamartin | Non-catalytic component of the TSC-TBC complex, a multiprotein complex that acts as a negative regulator of the canonical mTORC1 complex, an evolutionarily conserved central nutrient sensor that stimulates anabolic reactions and macromolec… |
| EIPR1 | EARP and GARP complex-interacting protein 1 | Acts as a component of endosomal retrieval machinery that is involved in protein transport from early endosomes to either recycling endosomes or the trans-Golgi network. |
| TYK2 | Non-receptor tyrosine-protein kinase TYK2 | Tyrosine kinase of the non-receptor type involved in numerous cytokines and interferons signaling, which regulates cell growth, development, cell migration, innate and adaptive immunity. |
| TYRP1 | 5,6-dihydroxyindole-2-carboxylic acid oxidase | Plays a role in melanin biosynthesis. |
| UBASH3A | Ubiquitin-associated and SH3 domain-containing protein A | Interferes with CBL-mediated down-regulation and degradation of receptor-type tyrosine kinases. |
| UBE2L3 | Ubiquitin-conjugating enzyme E2 L3 | Ubiquitin-conjugating enzyme E2 that specifically acts with HECT-type and RBR family E3 ubiquitin-protein ligases. |
| ACTA2 | Actin, aortic smooth muscle | Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. |
| RNF114 | E3 ubiquitin-protein ligase RNF114 | E3 ubiquitin-protein ligase that promotes the ubiquitination of various substrates. |
| IKZF3 | Zinc finger protein Aiolos | Transcription factor that plays an important role in the regulation of lymphocyte differentiation. |
| TRAF3IP2 | E3 ubiquitin ligase TRAF3IP2 | E3 ubiquitin ligase that catalyzes ‘Lys-63’-linked polyubiquitination of target protein, enhancing protein-protein interaction and cell signaling. |
Protein-family classification
Druggable: 20 · Difficult: 17 · Unknown: 38 · Druggable fraction: 0.27
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Kinase | 7 | 2.6× | 0.184 |
| Transcription factor | 14 | 1.5× | 0.324 |
| Nuclear receptor | 1 | 5.2× | 0.590 |
| Complement | 1 | 3.6× | 0.612 |
| Enzyme (other) | 7 | 1.1× | 0.872 |
| Phosphatase | 1 | 1.1× | 0.927 |
| Other/Unknown | 38 | 0.9× | 0.927 |
| Scaffold/PPI | 3 | 0.7× | 0.927 |
| GPCR | 2 | 0.6× | 0.927 |
| Antibody/Immunoglobulin | 1 | 0.4× | 0.927 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| RGS6 | Other/Unknown | no | DEP_dom, G-protein_gamma-like_dom, RGS | |
| RORC | Nuclear receptor | yes | Nucl_hrmn_rcpt_lig-bd, Znf_hrmn_rcpt, Nuclear_hrmn_rcpt | |
| RPS26 | Other/Unknown | no | Ribosomal_eS26, Ribosomal_eS26_sf, Ribosomal_eS26_CS | |
| RPS6KA4 | Kinase | yes | Prot_kinase_dom, AGC-kinase_C, Ser/Thr_kinase_AS | |
| RPS6KB1 | Kinase | yes | 2.7.11.1 | Prot_kinase_dom, AGC-kinase_C, Ser/Thr_kinase_AS |
| RUNX1 | Transcription factor | no | AML1_Runt, p53-like_TF_DNA-bd_sf, p53/RUNT-type_TF_DNA-bd_sf | |
| RUNX3 | Transcription factor | no | AML1_Runt, p53-like_TF_DNA-bd_sf, p53/RUNT-type_TF_DNA-bd_sf | |
| CCL21 | Other/Unknown | no | Chemokine_IL8-like_dom, Chemokine_CC_DCCL, Interleukin_8-like_sf | |
| XCL1 | Other/Unknown | no | Chemokine_IL8-like_dom, Chemokine_XCL1/XCL2, Interleukin_8-like_sf | |
| SDC4 | Other/Unknown | no | Syndecan, Neurexin-like, Syndecan/Neurexin_dom | |
| BRAP | Transcription factor | no | Znf_UBP, Znf_RING, BRAP2/ETP1_RRM | |
| SLIT1 | Other/Unknown | no | EGF-type_Asp/Asn_hydroxyl_site, LRRNT, Cys-rich_flank_reg_C | |
| SNAI1 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, | |
| BSN | Transcription factor | no | Znf_piccolo, Znf_FYVE_PHD, Znf_RING/FYVE/PHD | |
| SON | Scaffold/PPI | no | G_patch_dom, dsRBD_dom, | |
| BTD | Enzyme (other) | yes | 3.5.1.12 | C-N_Hydrolase, Biotinidase-like_euk, C-N_Hydrolase_sf |
| SPRR1B | Other/Unknown | no | ||
| SPRR3 | Other/Unknown | no | ||
| STAT2 | Transcription factor | no | SH2, STAT, p53-like_TF_DNA-bd_sf | |
| STAT3 | Transcription factor | no | SH2, STAT, p53-like_TF_DNA-bd_sf | |
| STK11 | Kinase | yes | 2.7.11.1 | Prot_kinase_dom, Ser/Thr_kinase_AS, Kinase-like_dom_sf |
| SUOX | Enzyme (other) | yes | 1.8.3.1 | OxRdtase_Mopterin-bd_dom, Cyt_B5-like_heme/steroid-bd, MoCF_OxRdtse_dimer |
| TARBP1 | Enzyme (other) | yes | 2.1.1.34 | SpoU_MeTrfase, ARM-type_fold, TARBP1 |
| ELOA | Other/Unknown | no | F-box_dom, TFIIS/CRSP70_N_sub, RNA_pol_II_trans_fac_SIII_A | |
| ACO1 | Enzyme (other) | yes | 4.2.1.3 | AconitaseA/IPMdHydase_ssu_swvl, Acoase/IPM_deHydtase_lsu_aba, Aconitase/IRP2 |
| TGM3 | Antibody/Immunoglobulin | yes | 2.3.2.13 | Transglutaminase_N, Transglutaminase-like, Transglutaminase_C |
| MYRF | Transcription factor | no | p53-like_TF_DNA-bd_sf, NDT80_DNA-bd_dom, MYRF_C2 | |
| TLR4 | Other/Unknown | no | TIR_dom, Cys-rich_flank_reg_C, Leu-rich_rpt | |
| TNFAIP3 | Transcription factor | no | Znf_A20, OTU_dom, OTU_Deubiquitinase | |
| TNFRSF14 | Other/Unknown | no | TNFR/NGFR_Cys_rich_reg, TNFR_14, TNFRSF14/UL144_N | |
| TNFRSF1A | Other/Unknown | no | Death_dom, TNFR/NGFR_Cys_rich_reg, DEATH-like_dom_sf | |
| CD40 | Other/Unknown | no | TNFR/NGFR_Cys_rich_reg, TNFR_5, TNFRSF5_N | |
| TNFRSF6B | Other/Unknown | no | TNFR/NGFR_Cys_rich_reg, TNFRSF6B_N, TNFRSF_decoy_receptor | |
| TNFRSF9 | Other/Unknown | no | TNFR/NGFR_Cys_rich_reg, Growth_fac_rcpt_cys_sf, TNFR_9 | |
| TNFSF15 | Other/Unknown | no | TNF_dom, TNF, Tumour_necrosis_fac-like_dom | |
| TNFSF18 | Other/Unknown | no | TNF_dom, Tumour_necrosis_fac-like_dom, TNFSF18 | |
| CD40LG | Other/Unknown | no | CD40L, TNF_dom, Tumour_necrosis_fac-like_dom | |
| FASLG | Other/Unknown | no | TNF_dom, TNF, Tumour_necrosis_fac-like_dom | |
| TNFSF8 | Other/Unknown | no | TNF_dom, Tumour_necrosis_fac-like_dom, TNF_CS | |
| TNP2 | Other/Unknown | no | TP2 | |
| TSC1 | Other/Unknown | no | Hamartin | |
| EIPR1 | Scaffold/PPI | no | WD40_rpt, WD40/YVTN_repeat-like_dom_sf, WD40_repeat_CS | |
| TYK2 | Kinase | yes | 2.7.10.2 | FERM_domain, Prot_kinase_dom, SH2 |
| TYRP1 | Other/Unknown | no | Tyrosinase_Cu-bd, Di-copper_centre_dom_sf, Tyrosinase/Hemocyanin | |
| UBASH3A | Phosphatase | yes | SH3_domain, UBA-like_sf, His_Pase_superF_clade-1 | |
| UBE2L3 | Enzyme (other) | yes | 2.3.2.23 | UBC, UBQ-conjugating_enzyme/RWD, UBQ-conjugating_AS |
| ACTA2 | Other/Unknown | no | Actin, Actin_CS, Actin/actin-like_CS | |
| RNF114 | Transcription factor | no | Znf_RING, Di19_Zn-bd, Znf_RING/FYVE/PHD | |
| SIRAL2 | Other/Unknown | no | FAM118 | |
| IKZF3 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Ikaros_C2H2-ZF |
Expression context
Cohort genes with no expression data: 0.
70 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 1 |
| moderate (6-20) | 0 |
| broad (>20) | 74 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| granulocyte | 12 |
| lymph node | 9 |
| left testis | 8 |
| middle temporal gyrus | 6 |
| right testis | 6 |
| male germ line stem cell (sensu Vertebrata) in testis | 5 |
| cartilage tissue | 5 |
| gall bladder | 5 |
| right lobe of liver | 5 |
| monocyte | 5 |
| secondary oocyte | 5 |
| cortical plate | 4 |
| sural nerve | 4 |
| right hemisphere of cerebellum | 4 |
| spleen | 4 |
| stromal cell of endometrium | 4 |
| blood | 4 |
| oocyte | 4 |
| cerebellar hemisphere | 3 |
| olfactory segment of nasal mucosa | 3 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| RGS6 | 185 | broad | marker | cortical plate, sural nerve, middle temporal gyrus |
| RORC | 209 | broad | marker | gastrocnemius, male germ line stem cell (sensu Vertebrata) in testis, hindlimb stylopod muscle |
| RPS26 | 140 | ubiquitous | marker | granulocyte, left adrenal gland cortex, mucosa of transverse colon |
| RPS6KA4 | 215 | ubiquitous | marker | right hemisphere of cerebellum, cerebellar hemisphere, cerebellar cortex |
| RPS6KB1 | 275 | ubiquitous | marker | endothelial cell, Brodmann (1909) area 23, calcaneal tendon |
| RUNX1 | 253 | ubiquitous | marker | olfactory segment of nasal mucosa, epithelium of bronchus, mucosa of paranasal sinus |
| RUNX3 | 220 | broad | marker | granulocyte, buccal mucosa cell, lymph node |
| CCL21 | 206 | tissue_specific | marker | lymph node, right lobe of thyroid gland, vermiform appendix |
| XCL1 | 131 | broad | marker | granulocyte, spleen, lymph node |
| SDC4 | 290 | ubiquitous | marker | olfactory segment of nasal mucosa, nasal cavity epithelium, cartilage tissue |
| BRAP | 286 | ubiquitous | marker | left testis, right testis, testis |
| SLIT1 | 186 | broad | marker | cortical plate, middle temporal gyrus, orbitofrontal cortex |
| SNAI1 | 164 | ubiquitous | marker | omental fat pad, peritoneum, gall bladder |
| BSN | 156 | broad | marker | frontal pole, paraflocculus, middle temporal gyrus |
| SON | 304 | ubiquitous | marker | pylorus, tendon of biceps brachii, cardia of stomach |
| BTD | 261 | ubiquitous | marker | islet of Langerhans, right lobe of liver, liver |
| SPRR1B | 175 | broad | marker | amniotic fluid, gingiva, cervix squamous epithelium |
| SPRR3 | 174 | broad | marker | lower esophagus mucosa, oral cavity, pharyngeal mucosa |
| STAT2 | 277 | ubiquitous | marker | granulocyte, stromal cell of endometrium, monocyte |
| STAT3 | 301 | ubiquitous | marker | type B pancreatic cell, pericardium, lower lobe of lung |
| STK11 | 238 | ubiquitous | marker | left testis, right testis, hindlimb stylopod muscle |
| SUOX | 267 | ubiquitous | marker | right lobe of liver, right adrenal gland, right adrenal gland cortex |
| TARBP1 | 290 | ubiquitous | marker | right hemisphere of cerebellum, right uterine tube, cerebellar hemisphere |
| ELOA | 289 | ubiquitous | marker | buccal mucosa cell, lower lobe of lung, cardia of stomach |
| ACO1 | 282 | ubiquitous | marker | right lobe of liver, liver, stromal cell of endometrium |
| TGM3 | 120 | tissue_specific | marker | lower esophagus mucosa, esophagus mucosa, skin of leg |
| MYRF | 223 | ubiquitous | marker | middle frontal gyrus, C1 segment of cervical spinal cord, inferior vagus X ganglion |
| TLR4 | 233 | ubiquitous | marker | monocyte, mononuclear cell, leukocyte |
| TNFAIP3 | 274 | ubiquitous | marker | vena cava, mucosa of paranasal sinus, vermiform appendix |
| TNFRSF14 | 134 | ubiquitous | marker | granulocyte, spleen, right uterine tube |
Protein interactions among cohort
Intra-cohort edges: 44.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| STAT3 | 10,108 |
| TLR4 | 6,974 |
| SNAI1 | 5,518 |
| RPS6KB1 | 5,474 |
| TSC1 | 5,445 |
| CAPZB | 5,209 |
| STK11 | 5,146 |
| RUNX1 | 4,994 |
| TNFRSF1A | 4,523 |
| FASLG | 4,373 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| BACH2 | TAGAP | string_interaction |
| BACH2 | UBASH3A | string_interaction |
| BRAP | TNFAIP3 | intact |
| CCL21 | XCL1 | biogrid_interaction, intact, string_interaction |
| CD40 | CD40LG | biogrid_interaction, intact, string_interaction |
| CD40 | FASLG | string_interaction |
| CD40 | SLC39A11 | intact |
| CD40 | TNFRSF9 | string_interaction |
| CD40 | TNFSF8 | string_interaction |
| CD40 | TRAF3IP2 | biogrid_interaction |
| CD40LG | TNFSF8 | string_interaction |
| FASLG | SKAP2 | intact |
| FASLG | TNFRSF1A | string_interaction |
| FASLG | TNFRSF6B | biogrid_interaction, intact, string_interaction |
| IKBKE | TRAF3IP2 | biogrid_interaction |
| IKZF3 | RUNX1 | string_interaction |
| IKZF3 | RUNX3 | string_interaction |
| PRM3 | TNP2 | string_interaction |
| RNF114 | SPATA2 | string_interaction |
| RNF114 | TNFAIP3 | biogrid_interaction, intact, string_interaction |
| RNF114 | TRAF3IP2 | string_interaction |
| RPS6KB1 | TSC1 | string_interaction |
| RUNX1 | RUNX3 | string_interaction |
| SPATA2 | TNFRSF1A | string_interaction |
| SPRR3 | STK11 | intact |
| SPRR3 | TGM3 | string_interaction |
| STAT2 | TYK2 | intact, string_interaction |
| STAT3 | TYK2 | string_interaction |
| TNFAIP3 | TNFRSF1A | biogrid_interaction |
| TNFAIP3 | TRAF3IP2 | string_interaction |
| TNFRSF14 | TNFRSF6B | string_interaction |
| TNFRSF14 | TNFSF15 | string_interaction |
| TNFRSF14 | TNFSF18 | string_interaction |
| TNFRSF14 | TNFSF8 | string_interaction |
| TNFRSF1A | TNFRSF6B | string_interaction |
| TNFRSF1A | TNFSF15 | string_interaction |
| TNFRSF1A | TNFSF8 | string_interaction |
| TNFRSF6B | TNFSF15 | biogrid_interaction, intact, string_interaction |
| TNFRSF6B | TNFSF8 | string_interaction |
| TNFRSF9 | TNFSF18 | string_interaction |
| TNFRSF9 | TNFSF8 | string_interaction |
| TNFSF15 | TNFSF18 | string_interaction |
| TNFSF15 | TNFSF8 | string_interaction |
| TP63 | UBASH3A | intact |
Structural data
PDB: 49 · AlphaFold-only: 26 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| RPS26 | P62854 | 190 |
| RORC | P51449 | 161 |
| TYK2 | P29597 | 52 |
| CASR | P41180 | 31 |
| TP63 | Q9H3D4 | 26 |
| RPS6KB1 | P23443 | 22 |
| UBE2L3 | P68036 | 21 |
| TNFAIP3 | P21580 | 17 |
| TLR4 | O00206 | 15 |
| IL23A | Q9NPF7 | 15 |
| CD40 | P25942 | 14 |
| TNFRSF9 | Q07011 | 14 |
| TNFRSF1A | P19438 | 13 |
| TYRP1 | P17643 | 13 |
| B3GNT2 | Q9NY97 | 12 |
| TGM3 | Q08188 | 11 |
| SNAI1 | O95863 | 9 |
| TNFRSF14 | Q92956 | 8 |
| TNFRSF6B | O95407 | 8 |
| CD40LG | P29965 | 8 |
| CAPZB | P47756 | 8 |
| XCL1 | P47992 | 7 |
| TNFSF15 | O95150 | 7 |
| TNFSF18 | Q9UNG2 | 7 |
| STAT2 | P52630 | 6 |
| STAT3 | P40763 | 6 |
| HDAC7 | Q8WUI4 | 6 |
| RUNX1 | Q01196 | 5 |
| CCL21 | O00585 | 5 |
| SDC4 | P31431 | 5 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| GLYAT | Q6IB77 | 95.71 |
| ACTA2 | P62736 | 95.43 |
| EIPR1 | Q53HC9 | 89.26 |
| IKBKE | Q14164 | 88.81 |
| BTD | P43251 | 86.77 |
| RNF114 | Q9Y508 | 84.23 |
| SIRAL2 | Q9NWS6 | 83.77 |
| SLIT1 | O75093 | 80.28 |
| TNFSF8 | P32971 | 80.07 |
| CHST8 | Q9H2A9 | 79.90 |
| CCHCR1 | Q8TD31 | 79.52 |
| BRAP | Q7Z569 | 76.92 |
| SLC39A11 | Q8N1S5 | 76.64 |
| ANO3 | Q9BYT9 | 76.30 |
| RPS6KA4 | O75676 | 72.00 |
| SPRR1B | P22528 | 70.02 |
| FOSL1 | P15407 | 67.32 |
| LPIN2 | Q92539 | 61.12 |
| OR2W5 | A6NFC9 | 60.12 |
| TNP2 | Q05952 | 59.17 |
| KLF13 | Q9Y2Y9 | 58.91 |
| PRM3 | Q9NNZ6 | 58.43 |
| TAGAP | Q8N103 | 57.36 |
| SPRR3 | Q9UBC9 | 52.87 |
| IKZF3 | Q9UKT9 | 48.06 |
| BSN | Q9UPA5 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 748. Enrichment computed across 250 evidence-associated genes (151 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 151 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| TNFs bind their physiological receptors | 8 | 20.9× | 2e-06 | TNFRSF14, TNFRSF1A, TNFRSF6B, TNFRSF9, TNFSF15, TNFSF18, FASLG, TNFSF8 |
| Interleukin-23 signaling | 4 | 33.6× | 0.001 | STAT3, TYK2, IL23A, IL23R |
| Regulation of TNFR1 signaling | 6 | 8.9× | 0.013 | TNFAIP3, TNFRSF1A, UBE2L3, IKBKE, SPATA2, CHUK |
| Interleukin-4 and Interleukin-13 signaling | 8 | 5.5× | 0.020 | RORC, STAT3, FASLG, TYK2, IL23A, IL23R, SOCS1, FOS |
| SARS-CoV-1 activates/modulates innate immune responses | 5 | 9.0× | 0.032 | RUNX1, IKBKE, IFIH1, RIGI, STING1 |
| TNFR1-induced proapoptotic signaling | 4 | 11.6× | 0.043 | TNFAIP3, TNFRSF1A, IKBKE, SPATA2 |
| Interleukin-20 family signaling | 4 | 11.2× | 0.043 | STAT2, STAT3, TYK2, IFNLR1 |
| RUNX3 regulates RUNX1-mediated transcription | 2 | 50.4× | 0.048 | RUNX1, RUNX3 |
| NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10 | 3 | 17.4× | 0.049 | IFIH1, RIGI, CHUK |
| TRAF3-dependent IRF activation pathway | 3 | 15.1× | 0.060 | IKBKE, IFIH1, RIGI |
| TNFR1-induced NF-kappa-B signaling pathway | 4 | 8.9× | 0.060 | TNFAIP3, TNFRSF1A, SPATA2, CHUK |
| Dengue virus activates/modulates innate and adaptive immune responses | 4 | 8.9× | 0.060 | STAT2, IKBKE, IFIH1, STING1 |
| Negative regulators of DDX58/IFIH1 signaling | 4 | 8.6× | 0.060 | TNFAIP3, IKBKE, IFIH1, RIGI |
| Evasion by RSV of host interferon responses | 4 | 8.6× | 0.060 | STAT2, TYK2, IFIH1, RIGI |
| SARS-CoV-2 activates/modulates innate and adaptive immune responses | 7 | 4.1× | 0.076 | STAT2, TYK2, IKBKE, IFIH1, RIGI, CHUK, STING1 |
| Formation of the cornified envelope | 7 | 4.1× | 0.078 | SPRR1B, SPRR3, LCE3D, LIPK, LCE3A, LCE3B, LCE3E |
| Modulation of host responses by IFN-stimulated genes | 3 | 11.9× | 0.083 | IFIH1, RIGI, CHUK |
| Ovarian tumor domain proteases | 4 | 7.4× | 0.085 | TNFAIP3, TNIP1, IFIH1, RIGI |
| Signaling by CSF3 (G-CSF) | 3 | 11.3× | 0.086 | STAT3, TYK2, SOCS1 |
| RUNX3 Regulates Immune Response and Cell Migration | 2 | 25.2× | 0.094 | RORC, RUNX3 |
| Oncogenic MAPK signaling | 4 | 6.6× | 0.111 | BRAP, CAMK2G, SPRED2, AGK |
| Differentiation of naive CD4+ T cells to T helper 2 cells (Th2 cells) | 5 | 4.8× | 0.125 | KLF13, HDAC7, TBL1XR1, ETS1, FOS |
| TRAF6 mediated NF-kB activation | 3 | 9.1× | 0.137 | IFIH1, RIGI, CHUK |
| Regulation of IFNA/IFNB signaling | 3 | 8.7× | 0.141 | STAT2, TYK2, SOCS1 |
| Inactivation of CSF3 (G-CSF) signaling | 3 | 8.7× | 0.141 | STAT3, TYK2, SOCS1 |
| Diseases of signal transduction by growth factor receptors and second messengers | 8 | 3.0× | 0.150 | BRAP, STAT3, CAMK2G, CD28, CEP43, SPRED2, AGK, TBL1XR1 |
| Defective BTD causes biotidinase deficiency | 1 | 75.6× | 0.157 | BTD |
| Defective SLC26A3 causes congenital secretory chloride diarrhea 1 (DIAR1) | 1 | 75.6× | 0.157 | SLC26A3 |
| FLT3 mutants bind TKIs | 1 | 75.6× | 0.157 | FLT3 |
| KW2449-resistant FLT3 mutants | 1 | 75.6× | 0.157 | FLT3 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 219 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| positive regulation of canonical NF-kappaB signal transduction | 17 | 5.6× | 2e-05 | CCL21, STAT3, TLR4, TNFRSF1A, CD40, TNFSF15, CD40LG, FASLG (+9 more) |
| positive regulation of interleukin-10 production | 7 | 12.8× | 5e-04 | XCL1, STAT3, TLR4, CD40LG, IL23A, CD28, INAVA |
| cell surface receptor signaling pathway via JAK-STAT | 8 | 10.6× | 5e-04 | STAT2, STAT3, TNFRSF1A, CD40, TYK2, IL23A, IL23R, SOCS1 |
| positive regulation of defense response to virus by host | 6 | 14.4× | 0.001 | TRAF3IP2, IL23A, IL23R, RIGI, STING1, AIM2 |
| inflammatory response | 19 | 3.3× | 0.002 | RPS6KA4, CCL21, XCL1, STAT3, TLR4, TNFAIP3, TNFRSF1A, CD40 (+11 more) |
| positive regulation of T-helper 17 type immune response | 4 | 25.6× | 0.003 | TYK2, IL23A, CARD9, IL23R |
| obsolete positive regulation of NF-kappaB transcription factor activity | 8 | 7.5× | 0.003 | RPS6KA4, TLR4, TNFSF18, CD40LG, CARD9, CARD14, CHUK, AIM2 |
| positive regulation of tumor necrosis factor production | 9 | 6.3× | 0.003 | STAT3, TLR4, IL23A, CARD9, LRRK2, SPHK2, IFIH1, RIGI (+1 more) |
| positive regulation of interferon-alpha production | 5 | 14.8× | 0.003 | TLR4, IFIH1, RIGI, CHUK, TRIM65 |
| positive regulation of inflammatory response | 9 | 6.0× | 0.003 | STAT3, TLR4, TNFRSF1A, TNFSF18, IL23A, TNIP1, NFKBIZ, ETS1 (+1 more) |
| T cell costimulation | 6 | 10.3× | 0.003 | CCL21, TNFRSF14, CD40LG, CD28, KLRK1, EFNB2 |
| interleukin-23-mediated signaling pathway | 3 | 38.5× | 0.005 | STAT3, TYK2, IL23R |
| tumor necrosis factor-mediated signaling pathway | 6 | 9.1× | 0.005 | TNFRSF1A, TNFSF18, TRAF3IP2, CARD14, CHUK, AIM2 |
| keratinization | 7 | 7.5× | 0.005 | SPRR1B, SPRR3, TGM3, LCE3D, LCE3A, LCE3B, LCE3E |
| defense response to Gram-negative bacterium | 8 | 6.2× | 0.005 | TLR4, TNFRSF14, IL23A, IL23R, LCE3A, LCE3B, IRGM, NFKBIZ |
| cytokine-mediated signaling pathway | 9 | 5.4× | 0.005 | STAT3, TNFRSF1A, TYK2, FOSL1, IFNLR1, IL23R, SOCS1, NFKBIZ (+1 more) |
| positive regulation of granulocyte macrophage colony-stimulating factor production | 4 | 18.1× | 0.005 | IL23A, CARD9, IL23R, RIGI |
| positive regulation of transcription by RNA polymerase II | 31 | 2.1× | 0.006 | RPS6KA4, RUNX1, XCL1, STAT2, STAT3, TLR4, TNFRSF1A, CD40 (+23 more) |
| regulation of type III interferon production | 2 | 77.0× | 0.014 | IFIH1, RIGI |
| CD40 signaling pathway | 3 | 23.1× | 0.015 | CD40, CD40LG, TRAF3IP2 |
| fat pad development | 3 | 23.1× | 0.015 | CASR, TBL1XR1, FOSL2 |
| regulation of tumor necrosis factor-mediated signaling pathway | 4 | 12.8× | 0.015 | TNFAIP3, TNFRSF1A, SPATA2, HIPK1 |
| positive regulation of interferon-beta production | 5 | 8.9× | 0.015 | TLR4, IFIH1, RIGI, TRIM65, STING1 |
| positive regulation of interleukin-12 production | 5 | 8.9× | 0.015 | TLR4, CD40, CD40LG, IL23A, IL23R |
| positive regulation of T cell proliferation | 6 | 7.1× | 0.015 | CD40LG, TYK2, IL23A, CD28, CD6, IL23R |
| keratinocyte differentiation | 6 | 6.8× | 0.015 | SPRR1B, SPRR3, TGM3, TP63, POU2F3, NFKBIZ |
| nucleotide-binding oligomerization domain containing 2 signaling pathway | 3 | 21.0× | 0.018 | TLR4, INAVA, IRGM |
| positive regulation of interleukin-6 production | 7 | 5.3× | 0.018 | STAT3, TLR4, CARD9, SPHK2, IFIH1, RIGI, INAVA |
| defense response to virus | 11 | 3.5× | 0.018 | STAT2, CD40, IKBKE, IL23A, CARD9, IFNLR1, IFIH1, RIGI (+3 more) |
| response to muramyl dipeptide | 3 | 19.2× | 0.020 | TNFAIP3, CARD9, INAVA |
Therapeutics
Drugs indicated for this disease
42 approved, 20 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Acitretin | Approved (phase 4) |
| Adalimumab | Approved (phase 4) |
| Apremilast | Approved (phase 4) |
| Bergapten | Approved (phase 4) |
| Betamethasone Dipropionate | Approved (phase 4) |
| Bimekizumab | Approved (phase 4) |
| Brodalumab | Approved (phase 4) |
| Calcipotriene | Approved (phase 4) |
| Calcitriol | Approved (phase 4) |
| Clobetasol Propionate | Approved (phase 4) |
| Coal Tar | Approved (phase 4) |
| Cyclosporine | Approved (phase 4) |
| Desoximetasone | Approved (phase 4) |
| Dexamethasone | Approved (phase 4) |
| Dimethyl Fumarate | Approved (phase 4) |
| Efalizumab | Approved (phase 4) |
| Etanercept | Approved (phase 4) |
| Etretinate | Approved (phase 4) |
| Fluocinolone Acetonide | Approved (phase 4) |
| Fumaric Acid | Approved (phase 4) |
| Guselkumab | Approved (phase 4) |
| Halobetasol Propionate | Approved (phase 4) |
| Hydrocortisone | Approved (phase 4) |
| Infliximab | Approved (phase 4) |
| Isopropyl Alcohol | Approved (phase 4) |
| Ixekizumab | Approved (phase 4) |
| Methotrexate | Approved (phase 4) |
| Methoxsalen | Approved (phase 4) |
| Prednisolone | Approved (phase 4) |
| Prednisone | Approved (phase 4) |
| Risankizumab | Approved (phase 4) |
| Roflumilast | Approved (phase 4) |
| Salicylic Acid | Approved (phase 4) |
| Secukinumab | Approved (phase 4) |
| Spesolimab | Approved (phase 4) |
| Tacalcitol | Approved (phase 4) |
| Tapinarof | Approved (phase 4) |
| Tazarotene | Approved (phase 4) |
| Tildrakizumab | Approved (phase 4) |
| Trioxsalen | Approved (phase 4) |
| Ustekinumab | Approved (phase 4) |
| Zinc Oxide | Approved (phase 4) |
| Acetylcysteine | Phase 3 (in late-stage trials) |
| Alefacept | Phase 3 (in late-stage trials) |
| Atorvastatin | Phase 3 (in late-stage trials) |
| Betamethasone | Phase 3 (in late-stage trials) |
| Briakinumab | Phase 3 (in late-stage trials) |
| Certolizumab Pegol | Phase 3 (in late-stage trials) |
| Cyanocobalamin | Phase 3 (in late-stage trials) |
| Ebdarokimab | Phase 3 (in late-stage trials) |
| Gumokimab | Phase 3 (in late-stage trials) |
| Metformin | Phase 3 (in late-stage trials) |
| Mirikizumab | Phase 3 (in late-stage trials) |
| Mufemilast | Phase 3 (in late-stage trials) |
| Pefcalcitol | Phase 3 (in late-stage trials) |
| Piclidenoson | Phase 3 (in late-stage trials) |
| Tacrolimus Anhydrous | Phase 3 (in late-stage trials) |
| Tofacitinib | Phase 3 (in late-stage trials) |
| Vitamin E | Phase 3 (in late-stage trials) |
| Voclosporin | Phase 3 (in late-stage trials) |
| Vunakizumab | Phase 3 (in late-stage trials) |
| Zasocitinib | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Abatacept, Abrocitinib, Alitretinoin, Baricitinib, Belumosudil, Bermekimab, Bexarotene, Brepocitinib, Cholecalciferol, Clobetasol, Crisaborole, Cromolyn, Delgocitinib, Dimethicone, Doxercalciferol, Erlotinib, Fludarabine, Fluphenazine Decanoate, Fluphenazine Enanthate, Hyaluronidase (Human Recombinant), Hypericin, Icotinib, Imsidolimab, Indigo, Itacitinib, Izokibep, Ketoconazole, Lestaurtinib, M-1095, Masitinib, Mometasone Furoate, Mycophenolate Mofetil, Niacinamide, Nortriptyline, Olive Oil, Paclitaxel, Peficitinib, Petrolatum, Pioglitazone, Ponesimod, Riboflavin, Rimegepant, Rose Bengal Free Acid, Ruxolitinib, Sitagliptin, Sodium Chloride, Teriparatide Acetate, Thalidomide, Triamcinolone, Triamcinolone Acetonide, Urea.
Drug target analysis
Approved (phase 4): 16 · Phase ≥3: 16 · Phased (≥1): 19 · Undrugged: 56
Druggability breadth: 99 of 250 evidence-associated genes (40%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| RORC | DIGOXIN |
| RPS26 | GENTAMICIN SULFATE |
| RPS6KA4 | FEDRATINIB |
| RPS6KB1 | FEDRATINIB |
| RUNX1 | APOMORPHINE HYDROCHLORIDE |
| SDC4 | BRIGATINIB |
| STAT3 | MOMELOTINIB |
| STK11 | FEDRATINIB |
| TLR4 | METHOTREXATE |
| TYK2 | FEDRATINIB |
| IKZF3 | POMALIDOMIDE |
| HDAC7 | CELECOXIB |
| IKBKE | MOMELOTINIB |
| CAMK2G | MOMELOTINIB |
| CASR | CINACALCET HYDROCHLORIDE |
| PAK5 | FEDRATINIB |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| TYK2 | 72 | 4 |
| RPS6KB1 | 39 | 4 |
| CAMK2G | 39 | 4 |
| IKBKE | 35 | 4 |
| RPS6KA4 | 34 | 4 |
| HDAC7 | 28 | 4 |
| STAT3 | 18 | 4 |
| STK11 | 17 | 4 |
| PAK5 | 11 | 4 |
| CASR | 10 | 4 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| DIGOXIN | 4 | RORC, STAT3 |
| TRETINOIN | 4 | RORC |
| ALITRETINOIN | 4 | RORC |
| GENTAMICIN SULFATE | 4 | RPS26 |
| FEDRATINIB | 4 | CAMK2G, IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11 |
| RUXOLITINIB | 4 | CAMK2G, IKBKE, PAK5, RPS6KA4, TYK2 |
| NINTEDANIB | 4 | IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11, TYK2 |
| SUNITINIB | 4 | CAMK2G, IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11 |
| ERLOTINIB | 4 | RPS6KA4, TYK2 |
| MIDOSTAURIN | 4 | CAMK2G, IKBKE, RPS6KA4, RPS6KB1, STK11, TYK2 |
| GEFITINIB | 4 | CAMK2G, RPS6KA4 |
| SORAFENIB | 4 | RPS6KB1 |
| VANDETANIB | 4 | RPS6KB1 |
| BOSUTINIB | 4 | CAMK2G, IKBKE, RPS6KB1, TYK2 |
| CRIZOTINIB | 4 | IKBKE, RPS6KB1, SDC4, TYK2 |
| APOMORPHINE HYDROCHLORIDE | 4 | RUNX1 |
| BRIGATINIB | 4 | CAMK2G, SDC4 |
| MOMELOTINIB | 4 | CAMK2G, IKBKE, STAT3, TYK2 |
| NITAZOXANIDE | 4 | STAT3 |
| NICLOSAMIDE | 4 | STAT3 |
| BARICITINIB | 4 | CAMK2G, STAT3, TYK2 |
| DIGITOXIN | 4 | STAT3 |
| DEUCRAVACITINIB | 4 | STAT3, TYK2 |
| PACRITINIB | 4 | IKBKE, STK11, TYK2 |
| METHOTREXATE | 4 | TLR4 |
| POLYMYXIN B | 4 | TLR4 |
| CARVEDILOL | 4 | TLR4 |
| TOFACITINIB | 4 | TYK2 |
| UPADACITINIB | 4 | TYK2 |
| FILGOTINIB | 4 | TYK2 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 14.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| HDAC7 | 1,710 | Binding:1695, ADMET:10, Functional:4, Toxicity:1 |
| STAT3 | 1,319 | Binding:1304, Functional:12, Unclassified:2, ADMET:1 |
| TYK2 | 1,083 | Binding:1043, Functional:39, ADMET:1 |
| RORC | 758 | Binding:707, Functional:50, Unclassified:1 |
| RPS6KB1 | 585 | Binding:582, Functional:2, ADMET:1 |
| RPS6KA4 | 389 | Binding:387, Functional:1, ADMET:1 |
| IKBKE | 359 | Binding:356, Functional:2, ADMET:1 |
| CAMK2G | 291 | Binding:290, Functional:1 |
| TLR4 | 267 | Binding:254, Functional:10, ADMET:3 |
| STK11 | 244 | Binding:244 |
| PAK5 | 217 | Binding:217 |
| IKZF3 | 101 | Binding:100, Functional:1 |
| RPS26 | 89 | Binding:89 |
| CASR | 45 | Functional:32, Binding:13 |
| STAT2 | 24 | Binding:24 |
| TNFRSF1A | 24 | Binding:23, Functional:1 |
| RUNX1 | 20 | Binding:17, Functional:3 |
| TGM3 | 15 | Binding:15 |
| TNFRSF9 | 11 | Binding:11 |
| CD40 | 10 | Binding:10 |
| CAPZB | 9 | Binding:9 |
| CD40LG | 8 | Binding:8 |
| SON | 7 | Binding:7 |
| RNF114 | 6 | Binding:6 |
| BTD | 3 | Binding:3 |
| TYRP1 | 3 | Binding:3 |
| BACH2 | 3 | Binding:3 |
| BRAP | 2 | Binding:2 |
| TARBP1 | 2 | Binding:2 |
| FASLG | 2 | Binding:2 |
| UBE2L3 | 2 | Binding:2 |
| SDC4 | 1 | Binding:1 |
| SPRR3 | 1 | Binding:1 |
| TNFAIP3 | 1 | Binding:1 |
| UBASH3A | 1 | Binding:1 |
| SLC39A11 | 1 | Binding:1 |
| B3GNT2 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| RPS6KB1 | 2.7.11.1 | non-specific serine/threonine protein kinase |
| BTD | 3.5.1.12 | biotinidase |
| STK11 | 2.7.11.1 | non-specific serine/threonine protein kinase |
| SUOX | 1.8.3.1 | sulfite oxidase |
| TARBP1 | 2.1.1.34 | tRNA (guanosine18-2’-O)-methyltransferase |
| ACO1 | 4.2.1.3 | aconitate hydratase |
| TGM3 | 2.3.2.13 | protein-glutamine gamma-glutamyltransferase |
| TYK2 | 2.7.10.2 | non-specific protein-tyrosine kinase |
| UBE2L3 | 2.3.2.23, 2.3.2.24 | E2 ubiquitin-conjugating enzyme, (E3-independent) E2 ubiquitin-conjugating enzyme |
| GLYAT | 2.3.1.13, 2.3.1.71 | glycine N-acyltransferase, glycine N-benzoyltransferase |
| HDAC7 | 3.5.1.98 | histone deacetylase |
| IKBKE | 2.7.11.10 | IkappaB kinase |
| CAMK2G | 2.7.11.17 | Ca2+/calmodulin-dependent protein kinase |
| PAK5 | 2.7.11.1, 2.7.12.2 | non-specific serine/threonine protein kinase, mitogen-activated protein kinase kinase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| RORC | 758 |
| RPS6KA4 | 389 |
| RPS6KB1 | 585 |
| STAT3 | 1,319 |
| STK11 | 244 |
| TLR4 | 267 |
| TYK2 | 1,083 |
| IKZF3 | 101 |
| HDAC7 | 1,710 |
| IKBKE | 359 |
| CAMK2G | 291 |
| PAK5 | 217 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 74; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
27 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| DIGOXIN | 4 | RORC, STAT3 |
| TRETINOIN | 4 | RORC |
| ALITRETINOIN | 4 | RORC |
| GENTAMICIN SULFATE | 4 | RPS26 |
| FEDRATINIB | 4 | CAMK2G, IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11 |
| NINTEDANIB | 4 | IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11, TYK2 |
| SUNITINIB | 4 | CAMK2G, IKBKE, PAK5, RPS6KA4, RPS6KB1, STK11 |
| ERLOTINIB | 4 | RPS6KA4, TYK2 |
| MIDOSTAURIN | 4 | CAMK2G, IKBKE, RPS6KA4, RPS6KB1, STK11, TYK2 |
| GEFITINIB | 4 | CAMK2G, RPS6KA4 |
| SORAFENIB | 4 | RPS6KB1 |
| VANDETANIB | 4 | RPS6KB1 |
| BOSUTINIB | 4 | CAMK2G, IKBKE, RPS6KB1, TYK2 |
| CRIZOTINIB | 4 | IKBKE, RPS6KB1, SDC4, TYK2 |
| APOMORPHINE HYDROCHLORIDE | 4 | RUNX1 |
| BRIGATINIB | 4 | CAMK2G, SDC4 |
| MOMELOTINIB | 4 | CAMK2G, IKBKE, STAT3, TYK2 |
| NITAZOXANIDE | 4 | STAT3 |
| NICLOSAMIDE | 4 | STAT3 |
| BARICITINIB | 4 | CAMK2G, STAT3, TYK2 |
| DIGITOXIN | 4 | STAT3 |
| DEUCRAVACITINIB | 4 | STAT3, TYK2 |
| PACRITINIB | 4 | IKBKE, STK11, TYK2 |
| POLYMYXIN B | 4 | TLR4 |
| CARVEDILOL | 4 | TLR4 |
| UPADACITINIB | 4 | TYK2 |
| FILGOTINIB | 4 | TYK2 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 16 | RORC, RPS26, RPS6KA4, RPS6KB1, RUNX1, SDC4, STAT3, STK11, TLR4, TYK2 (+6 more) |
| B | Phased (≥1) drug, not yet approved | 3 | SON, TGM3, TNFRSF1A |
| C | Druggable family + PDB, no drug | 6 | SUOX, TARBP1, ACO1, UBASH3A, UBE2L3, CSMD1 |
| D | Druggable family + AlphaFold only, no drug | 3 | BTD, GLYAT, OR2W5 |
| E | Difficult family or no structure, no drug | 47 | RGS6, RUNX3, CCL21, XCL1, BRAP, SLIT1, SNAI1, BSN, SPRR1B, SPRR3 (+37 more) |
Undrugged target profiles
56 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| STAT2 | 24 | TYK2 |
| TNFRSF6B | 0 | TNFRSF1A |
| FASLG | 2 | TNFRSF1A |
| RGS6 | 0 | — |
| RUNX3 | 0 | — |
| CCL21 | 0 | — |
| XCL1 | 0 | — |
| BRAP | 2 | — |
| SLIT1 | 0 | — |
| SNAI1 | 0 | — |
| BSN | 0 | — |
| BTD | 3 | — |
| SPRR1B | 0 | — |
| SPRR3 | 1 | — |
| SUOX | 0 | — |
| TARBP1 | 2 | — |
| ELOA | 0 | — |
| ACO1 | 0 | — |
| MYRF | 0 | — |
| TNFAIP3 | 1 | — |
| TNFRSF14 | 0 | — |
| CD40 | 10 | — |
| TNFRSF9 | 11 | — |
| TNFSF15 | 0 | — |
| TNFSF18 | 0 | — |
| CD40LG | 8 | — |
| TNFSF8 | 0 | — |
| TNP2 | 0 | — |
| TSC1 | 0 | — |
| EIPR1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 1,154.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 410 |
| PHASE2 | 188 |
| PHASE3 | 171 |
| PHASE4 | 143 |
| PHASE1 | 139 |
| PHASE1/PHASE2 | 25 |
| EARLY_PHASE1 | 15 |
| PHASE2/PHASE3 | 9 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03240809 | PHASE4 | ACTIVE_NOT_RECRUITING | An Open-label, Single-dose Study to Evaluate Safety, Tolerability, and Pharmacokinetics of Brodalumab in Pediatric Subjects |
| NCT03827876 | PHASE4 | RECRUITING | Enstilar in Combination With Enbrel or Humira for Plaque Psoriasis |
| NCT03987763 | PHASE4 | RECRUITING | A Safety and Pharmacokinetics Study of IDP-122 Lotion in Pediatric Participants With Plaque Psoriasis |
| NCT04119102 | PHASE4 | RECRUITING | Duobrii in Combination With Biologics |
| NCT04347473 | PHASE4 | RECRUITING | ILUMYA in Combination With HALOG Ointment 0.1% for Plaque Psoriasis. |
| NCT04372277 | PHASE4 | RECRUITING | Taltz in Combination With Enstilar for Psoriasis |
| NCT05004727 | PHASE4 | RECRUITING | Multi-Center PAMPA Study |
| NCT05185258 | PHASE4 | ACTIVE_NOT_RECRUITING | Residual Disease MEMory in PSOriasis Skin During EnstiLAR® and Narrow-band Ultraviolet B Therapy: The MEMPSOLAR Study |
| NCT05270733 | PHASE4 | RECRUITING | Development of Predictive Psoriasis Response Endotypes Using Single Cell Transcriptomics |
| NCT06857942 | PHASE4 | RECRUITING | A Study to Investigate the Effectiveness of Tirzepatide (LY3298176) Following Initiation of Ixekizumab (LY2439821) in Participants With Moderate-to-Severe Plaque PsO and Obesity or Overweight in Clinical Practice (TOGETHER AMPLIFY-PsO) |
| NCT07149792 | PHASE4 | RECRUITING | A Multi-center RCT Clinical Trial on Personalized Precision Medicine for Patients With Psoriasis and Psoriatic Arthritis and Investigation on Cardiovascular Biomarkers |
| NCT07352566 | PHASE4 | NOT_YET_RECRUITING | Utilization of a Microdevice for Psoriasis and Atopic Dermatitis |
| NCT07401992 | PHASE4 | RECRUITING | Effects of Semaglutide on Clinical Outcomes and Metabolic Inflammation in Psoriasis |
| NCT07432386 | PHASE4 | NOT_YET_RECRUITING | Methotrexate Versus Apremilast for Pruritus in Psoriasis |
| NCT07432815 | PHASE4 | RECRUITING | Treatment of Psoriasis With Depression and/or Anxiety With Methotrexate vs Combined Methotrexate and Antidepressant |
| NCT07485764 | PHASE4 | NOT_YET_RECRUITING | Metformin Combined With Secukinumab for Moderate-to-Severe Plaque Psoriasis in Overweight or Obese Chinese Patients |
| NCT07487831 | PHASE4 | NOT_YET_RECRUITING | The Impact of Salt Intake on Sodium in the Skin and Inflammatory Skin Disease |
| NCT00096980 | PHASE4 | COMPLETED | A Study to Evaluate Raptiva in Combination With Topical Psoriasis Therapies |
| NCT00110981 | PHASE4 | COMPLETED | Utilization of Narrow Band Ultraviolet B (UVB) Light Therapy and Etanercept for the Treatment of Psoriasis |
| NCT00111124 | PHASE4 | COMPLETED | Enbrel® in Psoriatic Arthritis |
| NCT00150930 | PHASE4 | UNKNOWN | Home UVB Phototherapy for Psoriasis: Effectiveness, Quality of Life and Cost-Effectiveness |
| NCT00161655 | PHASE4 | COMPLETED | Study Evaluating Etanercept and Methotrexate in Plaque Psoriasis |
| NCT00195507 | PHASE4 | COMPLETED | Study Evaluating Etanercept in the Treatment of Subjects With Psoriasis |
| NCT00249808 | PHASE4 | COMPLETED | A Study of Efalizumab in Participants With Moderate to Severe Chronic Psoriasis Who Have Failed, Have a Contraindication to, or Are Intolerant of Other Systemic Therapies |
| NCT00287118 | PHASE4 | COMPLETED | A Multicentre, Open Label Phase IIIb/IV Study of Subcutaneously Administered Raptiva in the Treatment of Adult Subjects With Moderate to Severe Plaque Psoriasis |
| NCT00312026 | PHASE4 | COMPLETED | A Study to Evaluate the Safety and Efficacy of Efalizumab in Adult Patients With Plaque Psoriasis Involving the Hands and/or Feet |
| NCT00332332 | PHASE4 | COMPLETED | Canadian Assessment of Patient Outcomes and Effectiveness of Etanercept (Enbrel) in Psoriasis |
| NCT00336973 | PHASE4 | COMPLETED | A Study to Evaluate Raptiva in Subjects With Chronic Moderate or Worse Plaque Psoriasis Who Have Had an Inadequate Response to an Anti-TNF Agent |
| NCT00436540 | PHASE4 | COMPLETED | A Comparison Between Clobetasol Propionate 0.05% (Clobex®) Spray and Clobetasol Propionate 0.05% (Olux®) Foam |
| NCT00437619 | PHASE4 | COMPLETED | A Study of Sequential Treatment With Daivobet (Betamethasone Dipropionate Plus Calcipotriol) and Daivonex (Calcipotriol) in Patients With Psoriasis. |
| NCT00462072 | PHASE4 | COMPLETED | Centocor Microarray Study of Patients |
| NCT00581165 | PHASE4 | COMPLETED | Study Evaluating Safety of Etanercept in Treatment of Patients With Moderate to Severe Psoriasiswith Etanercept |
| NCT00581555 | PHASE4 | COMPLETED | Evaluation of Etanercept in Patients With Plaque Psoriasis After Stopping Ciclosporin Therapy |
| NCT00655564 | PHASE4 | COMPLETED | Long-Term One Year Use of Alefacept (Amevive®) in Moderate to Severe Chronic Plaque Type Psoriasis |
| NCT00663052 | PHASE4 | COMPLETED | Study Evaluating Etanercept for the Treatment of Moderate to Severe Psoriasis |
| NCT00669123 | PHASE4 | COMPLETED | Chondroitin Sulphate Efficay/Safety in Patients With Knee Osteoarthritis and Psoriasis |
| NCT00669214 | PHASE4 | COMPLETED | A Study to Evaluate the Safety and Efficacy of Efalizumab in Adult Patients With Moderate to Severe Plaque Psoriasis With Involvement of the Scalp |
| NCT00686595 | PHASE4 | COMPLETED | A Study to Evaluate the Switch From Etanercept to Infliximab in Subjects With Moderate-to-Severe Psoriasis (Study P05133) |
| NCT00697034 | PHASE4 | TERMINATED | Effects of Capsaicin on the Structure, Distribution, and Function of Cutaneous Small Nerve Fibers in Psoriatic Skin |
| NCT00723437 | PHASE4 | COMPLETED | Evaluation of the Efficacy of Acitretin Therapy for Nail Psoriasis |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| ETANERCEPT | 4 | 54 |
| CRAVACITINIB | 4 | 38 |
| CALCIPOTRIENE | 4 | 28 |
| APREMILAST | 4 | 26 |
| RISANKIZUMAB | 4 | 26 |
| TOFACITINIB | 4 | 25 |
| USTEKINUMAB | 4 | 23 |
| GUSELKUMAB | 4 | 20 |
| SECUKINUMAB | 4 | 20 |
| BRODALUMAB | 4 | 16 |
| CLOBETASOL PROPIONATE | 4 | 13 |
| ACITRETIN | 4 | 11 |
| EFALIZUMAB | 4 | 11 |
| IXEKIZUMAB | 4 | 11 |
| ADALIMUMAB | 4 | 9 |
| TAPINAROF | 4 | 9 |
| INFLIXIMAB | 4 | 8 |
| METHOTREXATE | 4 | 7 |
| ALEFACEPT | 4 | 6 |
| HALOBETASOL PROPIONATE | 4 | 6 |
| CALCITRIOL | 4 | 5 |
| DESOXIMETASONE | 4 | 5 |
| RUXOLITINIB | 4 | 5 |
| TILDRAKIZUMAB | 4 | 5 |
| CRISABOROLE | 4 | 4 |
| MIRIKIZUMAB | 4 | 4 |
| ROFLUMILAST | 4 | 4 |
| BETAMETHASONE VALERATE | 4 | 3 |
| BIMEKIZUMAB | 4 | 3 |
| CERTOLIZUMAB PEGOL | 4 | 3 |
Related Atlas pages
- Cohort genes: RGS6, RORC, RPS26, RPS6KA4, RPS6KB1, RUNX1, RUNX3, CCL21, XCL1, SDC4, BRAP, SLIT1, SNAI1, BSN, SON, BTD, SPRR1B, SPRR3, STAT2, STAT3, STK11, SUOX, TARBP1, ELOA, ACO1, TGM3, MYRF, TLR4, TNFAIP3, TNFRSF14, TNFRSF1A, CD40, TNFRSF6B, TNFRSF9, TNFSF15, TNFSF18, CD40LG, FASLG, TNFSF8, TNP2, TSC1, EIPR1, TYK2, TYRP1, UBASH3A, UBE2L3, ACTA2, RNF114, SIRAL2, IKZF3, TRAF3IP2, KLF13, FOSL1, PRM3, GLYAT, CCHCR1, ANO3, CSMD1, HDAC7, BACH2, LPIN2, SLC39A11, IKBKE, CAMK2G, SPATA2, CAPZB, CASR, IL23A, B3GNT2, TAGAP, SKAP2, PAK5, TP63, CHST8
- Drugs: Etanercept, Cravacitinib, Calcipotriene, Apremilast, Risankizumab, Tofacitinib, Ustekinumab, Guselkumab, Secukinumab, Brodalumab, Clobetasol Propionate, Acitretin, Efalizumab, Ixekizumab, Adalimumab, Tapinarof, Infliximab, Methotrexate, Alefacept, Halobetasol Propionate, Calcitriol, Desoximetasone, Ruxolitinib, Tildrakizumab, Crisaborole, Mirikizumab, Roflumilast, Betamethasone Valerate, Bimekizumab, Certolizumab Pegol