Rothmund-Thomson syndrome
disease diseaseOn this page
Also known as poikiloderma congenitalepoikiloderma of Rothmund-ThomsonRTS
Summary
Rothmund-Thomson syndrome (MONDO:0010002) is a disease caused by RECQL4 (GenCC Definitive), with 2 cohort genes and 2 clinical trials.
At a glance
- Prevalence: <1 / 1 000 000 (Worldwide) [Orphanet-validated]
- Causal gene: RECQL4 (GenCC Definitive)
- Cohort genes: 2
- ClinVar variants: 52
- Phenotypes (HPO): 56
- Clinical trials: 2
Clinical features
Epidemiology
Prevalence records
2 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Cases/families | 500 | Worldwide | Validated | |
| Point prevalence | <1 / 1 000 000 | Worldwide | Validated |
Signs & symptoms
Clinical features (HPO)
56 HPO clinical features (Orphanet curated; top 50 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0000988 | Skin rash | Very frequent (80-99%) |
| HP:0001029 | Poikiloderma | Very frequent (80-99%) |
| HP:0025300 | Malar rash | Very frequent (80-99%) |
| HP:0000164 | Abnormality of the dentition | Frequent (30-79%) |
| HP:0000653 | Sparse eyelashes | Frequent (30-79%) |
| HP:0000789 | Infertility | Frequent (30-79%) |
| HP:0000924 | Abnormality of the skeletal system | Frequent (30-79%) |
| HP:0001518 | Small for gestational age | Frequent (30-79%) |
| HP:0004322 | Short stature | Frequent (30-79%) |
| HP:0004349 | Reduced bone mineral density | Frequent (30-79%) |
| HP:0007556 | Plantar hyperkeratosis | Frequent (30-79%) |
| HP:0007588 | Reticular hyperpigmentation | Frequent (30-79%) |
| HP:0008066 | Abnormal blistering of the skin | Frequent (30-79%) |
| HP:0008070 | Sparse hair | Frequent (30-79%) |
| HP:0010765 | Palmar hyperkeratosis | Frequent (30-79%) |
| HP:0045075 | Sparse eyebrow | Frequent (30-79%) |
| HP:0000282 | Facial edema | Occasional (5-29%) |
| HP:0000670 | Carious teeth | Occasional (5-29%) |
| HP:0000682 | Abnormality of dental enamel | Occasional (5-29%) |
| HP:0000684 | Delayed eruption of teeth | Occasional (5-29%) |
| HP:0000685 | Hypoplasia of teeth | Occasional (5-29%) |
| HP:0000691 | Microdontia | Occasional (5-29%) |
| HP:0000938 | Osteopenia | Occasional (5-29%) |
| HP:0001010 | Hypopigmentation of the skin | Occasional (5-29%) |
| HP:0001118 | Juvenile cataract | Occasional (5-29%) |
| HP:0001592 | Selective tooth agenesis | Occasional (5-29%) |
| HP:0001597 | Abnormality of the nail | Occasional (5-29%) |
| HP:0001792 | Small nail | Occasional (5-29%) |
| HP:0001871 | Abnormality of blood and blood-forming tissues | Occasional (5-29%) |
| HP:0002013 | Vomiting | Occasional (5-29%) |
| HP:0002014 | Diarrhea | Occasional (5-29%) |
| HP:0002164 | Nail dysplasia | Occasional (5-29%) |
| HP:0002659 | Increased susceptibility to fractures | Occasional (5-29%) |
| HP:0003022 | Hypoplasia of the ulna | Occasional (5-29%) |
| HP:0003993 | Broad ulna | Occasional (5-29%) |
| HP:0006498 | Aplasia/Hypoplasia of the patella | Occasional (5-29%) |
| HP:0006501 | Aplasia/Hypoplasia of the radius | Occasional (5-29%) |
| HP:0008065 | Aplasia/Hypoplasia of the skin | Occasional (5-29%) |
| HP:0008069 | Neoplasm of the skin | Occasional (5-29%) |
| HP:0009778 | Short thumb | Occasional (5-29%) |
| HP:0011069 | Supernumerary tooth | Occasional (5-29%) |
| HP:0031367 | Metaphyseal striations | Occasional (5-29%) |
| HP:0100585 | Telangiectasia of the skin | Occasional (5-29%) |
| HP:0100671 | Abnormal trabecular bone morphology | Occasional (5-29%) |
| HP:0001875 | Decreased total neutrophil count | Very rare (<1-4%) |
| HP:0001903 | Anemia | Very rare (<1-4%) |
| HP:0001909 | Leukemia | Very rare (<1-4%) |
| HP:0001915 | Aplastic anemia | Very rare (<1-4%) |
| HP:0002671 | Basal cell carcinoma | Very rare (<1-4%) |
| HP:0002860 | Squamous cell carcinoma | Very rare (<1-4%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | Rothmund-Thomson syndrome |
| Mondo ID | MONDO:0010002 |
| MeSH | D011038 |
| OMIM | 268400 |
| Orphanet | 2909 |
| DOID | DOID:2732 |
| ICD-11 | 652761118 |
| NCIT | C3335 |
| SNOMED CT | 69093006 |
| UMLS | C0032339 |
| MedGen | 10819 |
| GARD | 0004392 |
| NORD | 1678 |
| Is cancer (heuristic) | no |
Also known as: poikiloderma congenitale · poikiloderma of Rothmund-Thomson · Rothmund-Thomson syndrome · RTS
Data availability: 52 ClinVar variants · 1 GenCC gene-disease record · 13 cell lines.
Disease family
An umbrella term covering 4 Mondo subtypes.
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › hereditary neoplastic syndrome › Rothmund-Thomson syndrome
Related subtypes (116): mosaic variegated aneuploidy syndrome, tuberous sclerosis, hereditary breast ovarian cancer syndrome, hereditary multiple osteochondromas, nevoid basal cell carcinoma syndrome, leukemia, chronic lymphocytic, susceptibility to, 2, blue rubber bleb nevus, cherubism, Beckwith-Wiedemann syndrome, multiple self-healing squamous epithelioma, erythroleukemia, familial, susceptibility to, goiter, multinodular 1, with or without Sertoli-Leydig cell tumors, hyperparathyroidism 2 with jaw tumors, Kaposi sarcoma, susceptibility to, hereditary leiomyomatosis and renal cell cancer, susceptibility to uveal melanoma, melanoma and neural system tumor syndrome, nasopharyngeal carcinoma, susceptibility to, 2, WAGR syndrome, neuroblastoma, susceptibility to, 1, mismatch repair cancer syndrome 1, Wiskott-Aldrich syndrome, N syndrome, hereditary thrombocytopenia and hematologic cancer predisposition syndrome, prostate cancer/brain cancer susceptibility, Brooke-Spiegler syndrome, pancreatic cancer, susceptibility to, 1, Carney-Stratakis syndrome, nasopharyngeal carcinoma, susceptibility to, 1, ovarian cancer, susceptibility to, 1, colorectal cancer, susceptibility to, 1, lung cancer susceptibility 1, leukemia, chronic lymphocytic, susceptibility to, 1, Kostmann syndrome, colorectal cancer, susceptibility to, 2, colorectal cancer, susceptibility to, 3, colorectal cancer, susceptibility to, 5, colorectal cancer, susceptibility to, 6, colorectal cancer, susceptibility to, 7, leukemia, chronic lymphocytic, susceptibility to, 3, leukemia, chronic lymphocytic, susceptibility to, 4, leukemia, chronic lymphocytic, susceptibility to, 5, lung cancer susceptibility 3, colorectal cancer, susceptibility to, 8, colorectal cancer, susceptibility to, 9, colorectal cancer, susceptibility to, 10, colorectal cancer, susceptibility to, 11, lung cancer susceptibility 4, neuroblastoma, susceptibility to, 3, neuroblastoma, susceptibility to, 4, neuroblastoma, susceptibility to, 5, neuroblastoma, susceptibility to, 6, leukemia, acute lymphocytic, susceptibility to, 1, leukemia, acute lymphocytic, susceptibility to, 2, lung cancer susceptibility 5, BAP1-related tumor predisposition syndrome, familial cutaneous telangiectasia and oropharyngeal predisposition cancer syndrome, Maffucci syndrome, basal cell carcinoma, susceptibility to, 7, colorectal cancer, susceptibility to, 12, leukemia, acute lymphoblastic, susceptibility to, 3, cholangiocarcinoma, susceptibility to, progeroid features-hepatocellular carcinoma predisposition syndrome, neuroblastoma, susceptibility to, 7, DDX41-related hematologic malignancy predisposition syndrome, nasopharyngeal carcinoma, susceptibility to, 3, familial isolated hyperparathyroidism, intestinal polyposis syndrome, dyskeratosis congenita, familial rhabdoid tumor, multiple endocrine neoplasia, hereditary pheochromocytoma-paraganglioma, PTEN hamartoma tumor syndrome, familial multiple fibrofolliculoma, hereditary retinoblastoma, familial atypical multiple mole melanoma syndrome, hereditary nonpolyposis colon cancer, Li-Fraumeni syndrome, Cobb syndrome, neurofibromatosis, susceptibility to familial cutaneous melanoma, pancreatic cancer, susceptibility to, 5, leukemia, acute myeloid, susceptibility to, diffuse gastric and lobular breast cancer syndrome with or without cleft lip and/or palate, glioma susceptibility, hemangioma, capillary infantile, susceptibility to, CDH1-related diffuse gastric and lobular breast cancer syndrome, NTHL1-deficiency tumor predisposition syndrome, SAMD9-related spectrum and myeloid neoplasm risk, neuroblastoma, susceptibility to, 2, BARD1-related cancer predisposition, BRCA1-related cancer predisposition, BRCA2-related cancer predisposition, ATM-related cancer predisposition, CHEK2-related cancer predisposition, PALB2-related cancer predisposition, RAD51C-related cancer predisposition, RAD51D-related cancer predisposition, Li-fraumeni-like syndrome, breast cancer, familial, susceptibility to, 1, breast cancer, familial, susceptibility to, 2, breast cancer, familial, susceptibility to, 3, colorectal cancer, susceptibility to, 4, colorectal cancer, susceptibility to, on chromosome 15, ovarian cancer, familial, susceptibility to, 1, ovarian cancer, familial, susceptibility to, 2, ovarian cancer, familial, susceptibility to, 3, inherited hematologic cancer-predisposing syndrome, mosaic neurofibromatosis/schwannomatosis, tumor predisposition syndrome 2, prostate cancer, hereditary, X-linked 3, follicular lymphoma, susceptibility to, GPR161-related medulloblastoma predisposition, SAMD9L-related spectrum and myeloid neoplasm risk, HAVCR2-related cancer predisposition, EGLN1-related erythrocytosis and pheochromocytoma/paraganglioma predisposition
Subtypes (4): Rothmund-Thomson syndrome type 3, Rothmund-Thomson syndrome type 1, Rothmund-Thomson syndrome type 2, Rothmund-Thomson syndrome type 4
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
52 retrieved; paginated sample, class counts are floors:
23 uncertain significance, 14 conflicting classifications of pathogenicity, 8 pathogenic, 4 likely pathogenic, 2 pathogenic/likely pathogenic, 1 likely benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 1710081 | NM_001080449.3(DNA2):c.588-2214A>G | DNA2 | Pathogenic | criteria provided, single submitter |
| 1710083 | NM_001080449.3(DNA2):c.1711dup (p.Ile571fs) | DNA2 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1710084 | NC_000010.11:g.68413754_68420303del | DNA2 | Pathogenic | criteria provided, single submitter |
| 1710085 | NM_001080449.3(DNA2):c.2208+2456_2403-18del | DNA2 | Pathogenic | criteria provided, single submitter |
| 1710086 | NM_001080449.3(DNA2):c.442-768_587+648del | DNA2 | Pathogenic | criteria provided, single submitter |
| 459388 | NM_004260.4(RECQL4):c.221_222del (p.Glu74fs) | RECQL4 | Pathogenic | criteria provided, single submitter |
| 561097 | NM_004260.4(RECQL4):c.1149G>A (p.Trp383Ter) | RECQL4 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 6063 | NM_004260.4(RECQL4):c.2269C>T (p.Gln757Ter) | RECQL4 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 6066 | NM_004260.4(RECQL4):c.1573del (p.Cys525fs) | RECQL4 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 666982 | NM_004260.4(RECQL4):c.1089C>G (p.Tyr363Ter) | RECQL4 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 1710082 | NM_001080449.3(DNA2):c.143T>C (p.Leu48Pro) | DNA2 | Likely pathogenic | criteria provided, single submitter |
| 225453 | NM_004260.4(RECQL4):c.1390+1G>T | RECQL4 | Likely pathogenic | criteria provided, single submitter |
| 559921 | NM_004260.4(RECQL4):c.3293_3294insGCAGGATGAGGAGCGCAGCA (p.Arg1099fs) | RECQL4 | Likely pathogenic | criteria provided, single submitter |
| 559922 | NM_004260.4(RECQL4):c.2336_2357del (p.Asp779fs) | RECQL4 | Likely pathogenic | criteria provided, single submitter |
| 135133 | NM_004260.4(RECQL4):c.1868G>A (p.Arg623His) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 135144 | NM_004260.4(RECQL4):c.3172C>G (p.Arg1058Gly) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 135170 | NM_004260.4(RECQL4):c.1151G>A (p.Arg384Gln) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 239694 | NM_004260.4(RECQL4):c.1219G>A (p.Glu407Lys) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 239773 | NM_004260.4(RECQL4):c.385C>T (p.Pro129Ser) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 259258 | NM_004260.4(RECQL4):c.1568G>C (p.Ser523Thr) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 288908 | NM_004260.4(RECQL4):c.1570C>T (p.Pro524Ser) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 406917 | NM_004260.4(RECQL4):c.2761G>A (p.Glu921Lys) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 407023 | NM_004260.4(RECQL4):c.3317G>A (p.Arg1106His) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 407037 | NM_004260.4(RECQL4):c.1064G>A (p.Arg355Gln) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 459315 | NM_004260.4(RECQL4):c.1345A>C (p.Thr449Pro) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 459352 | NM_004260.4(RECQL4):c.1892G>A (p.Arg631His) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 459412 | NM_004260.4(RECQL4):c.2543G>A (p.Arg848His) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 528975 | NM_004260.4(RECQL4):c.3528G>A (p.Val1176=) | RECQL4 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 406965 | NM_004260.4(RECQL4):c.20T>G (p.Val7Gly) | LOC130001411 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 212027 | NM_004260.4(RECQL4):c.1649C>T (p.Ala550Val) | RECQL4 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 15 · Orphanet: 6 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| RECQL4 | Definitive | Autosomal recessive | Rothmund-Thomson syndrome | 15 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| RECQL4 | Orphanet:1225 | Baller-Gerold syndrome |
| RECQL4 | Orphanet:221016 | Rothmund-Thomson syndrome type 2 |
| RECQL4 | Orphanet:3021 | RAPADILINO syndrome |
| DNA2 | Orphanet:352470 | DNA2-related mitochondrial DNA deletion syndrome |
| DNA2 | Orphanet:715635 | Rothmund-Thomson syndrome type 4 |
| DNA2 | Orphanet:808 | Seckel syndrome |
Cohort genes → proteins
2 cohort genes, 2 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 2 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| RECQL4 | HGNC:9949 | ENSG00000160957 | O94761 | ATP-dependent DNA helicase Q4 | gencc,clinvar |
| DNA2 | HGNC:2939 | ENSG00000138346 | P51530 | DNA replication ATP-dependent helicase/nuclease DNA2 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| RECQL4 | ATP-dependent DNA helicase Q4 | An ATP-dependent DNA helicase which unwinds dsDNA with a 3’-overhang in a 3’-5’ direction. |
| DNA2 | DNA replication ATP-dependent helicase/nuclease DNA2 | Key enzyme involved in DNA replication and DNA repair in nucleus and mitochondrion. |
Protein-family classification
Druggable: 1 · Difficult: 0 · Unknown: 1 · Druggable fraction: 0.5
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Enzyme (other) | 1 | 6.0× | 0.320 |
| Other/Unknown | 1 | 0.9× | 0.805 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| RECQL4 | Enzyme (other) | yes | 3.6.4.12 | Helicase_C-like, DNA_helicase_ATP-dep_RecQ, DEAD/DEAH_box_helicase_dom |
| DNA2 | Other/Unknown | no | PDDEXK-like_dom_sf, DNA_replication_fac_Dna2_N, Dna2/JHS1_DEXXQ-box |
Expression context
Cohort genes with no expression data: 0.
1 cohort gene are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 2 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| lower esophagus mucosa | 1 |
| mucosa of transverse colon | 1 |
| ventricular zone | 1 |
| Brodmann (1909) area 10 | 1 |
| primordial germ cell in gonad | 1 |
| secondary oocyte | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| RECQL4 | 212 | ubiquitous | yes | lower esophagus mucosa, ventricular zone, mucosa of transverse colon |
| DNA2 | 192 | ubiquitous | marker | secondary oocyte, primordial germ cell in gonad, Brodmann (1909) area 10 |
Protein interactions among cohort
Intra-cohort edges: 1.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| RECQL4 | 6,330 |
| DNA2 | 2,792 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| DNA2 | RECQL4 | string_interaction |
Structural data
PDB: 2 · AlphaFold-only: 0 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| RECQL4 | O94761 | 2 |
| DNA2 | P51530 | 1 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 16. Enrichment computed across 2 evidence-associated genes (1 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 1 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Removal of the Flap Intermediate | 1 | 815.7× | 0.005 | DNA2 |
| Removal of the Flap Intermediate from the C-strand | 1 | 634.4× | 0.005 | DNA2 |
| Impaired BRCA2 binding to PALB2 | 1 | 456.8× | 0.005 | DNA2 |
| Defective homologous recombination repair (HRR) due to BRCA1 loss of function | 1 | 423.0× | 0.005 | DNA2 |
| Defective HDR through Homologous Recombination Repair (HRR) due to PALB2 loss of BRCA1 binding function | 1 | 423.0× | 0.005 | DNA2 |
| Defective HDR through Homologous Recombination Repair (HRR) due to PALB2 loss of BRCA2/RAD51/RAD51C binding function | 1 | 423.0× | 0.005 | DNA2 |
| Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA) | 1 | 393.8× | 0.005 | DNA2 |
| Homologous DNA Pairing and Strand Exchange | 1 | 380.7× | 0.005 | DNA2 |
| Impaired BRCA2 binding to RAD51 | 1 | 308.6× | 0.005 | DNA2 |
| Resolution of D-loop Structures through Holliday Junction Intermediates | 1 | 300.5× | 0.005 | DNA2 |
| HDR through Single Strand Annealing (SSA) | 1 | 292.8× | 0.005 | DNA2 |
| Presynaptic phase of homologous DNA pairing and strand exchange | 1 | 271.9× | 0.005 | DNA2 |
| HDR through Homologous Recombination (HRR) | 1 | 190.3× | 0.006 | DNA2 |
| G2/M DNA damage checkpoint | 1 | 120.2× | 0.009 | DNA2 |
| Regulation of TP53 Activity through Phosphorylation | 1 | 117.7× | 0.009 | DNA2 |
| Processing of DNA double-strand break ends | 1 | 114.2× | 0.009 | DNA2 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 2 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| telomere maintenance | 2 | 267.5× | 2e-04 | RECQL4, DNA2 |
| DNA replication | 2 | 165.2× | 3e-04 | RECQL4, DNA2 |
| DNA replication, Okazaki fragment processing | 1 | 8426.0× | 7e-04 | DNA2 |
| mitotic telomere maintenance via semi-conservative replication | 1 | 2808.7× | 0.002 | DNA2 |
| DNA replication, removal of RNA primer | 1 | 2106.5× | 0.002 | DNA2 |
| replication fork reversal | 1 | 1685.2× | 0.002 | DNA2 |
| telomere maintenance via semi-conservative replication | 1 | 1404.3× | 0.002 | DNA2 |
| mitochondrial DNA repair | 1 | 1203.7× | 0.002 | DNA2 |
| DNA geometric change | 1 | 1053.2× | 0.002 | DNA2 |
| telomeric D-loop disassembly | 1 | 936.2× | 0.002 | RECQL4 |
| DNA double-strand break processing | 1 | 766.0× | 0.002 | DNA2 |
| mitochondrial DNA replication | 1 | 766.0× | 0.002 | DNA2 |
| t-circle formation | 1 | 702.2× | 0.002 | DNA2 |
| DNA replication checkpoint signaling | 1 | 648.1× | 0.002 | DNA2 |
| positive regulation of DNA replication | 1 | 290.6× | 0.004 | DNA2 |
| base-excision repair | 1 | 234.1× | 0.005 | DNA2 |
| double-strand break repair via homologous recombination | 1 | 78.0× | 0.014 | RECQL4 |
| DNA repair | 1 | 31.9× | 0.031 | RECQL4 |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 2
Druggability breadth: 1 of 2 evidence-associated genes (50%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| RECQL4 | 0 | 0 |
| DNA2 | 0 | 0 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 1.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| DNA2 | 23 | Binding:23 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| RECQL4 | 3.6.4.12 | DNA helicase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 2; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 0 | |
| C | Druggable family + PDB, no drug | 1 | RECQL4 |
| D | Druggable family + AlphaFold only, no drug | 0 | |
| E | Difficult family or no structure, no drug | 1 | DNA2 |
Undrugged target profiles
2 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| RECQL4 | 0 | — |
| DNA2 | 23 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 2.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 2 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03050268 | Not specified | RECRUITING | Familial Investigations of Childhood Cancer Predisposition |
| NCT01304407 | Not specified | COMPLETED | Calcium Absorption in Patients With Rothmund-Thomson Syndrome |