Scapuloperoneal spinal muscular atrophy, autosomal dominant

disease
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Also known as neurogenic scapuloperoneal amyotrophy, New England typescapuloperoneal neuronopathyscapuloperoneal spinal muscular atrophySPSMA

Summary

Scapuloperoneal spinal muscular atrophy, autosomal dominant (MONDO:0008408) is a disease with 2 cohort genes.

At a glance

  • Prevalence: <1 / 1 000 000 (Worldwide) [Orphanet-validated]
  • Cohort genes: 2
  • ClinVar variants: 129

Clinical features

Epidemiology

Prevalence records

2 prevalence record(s), Orphanet:

TypeClassValueGeographyValidation
Cases/families31WorldwideValidated
Point prevalence<1 / 1 000 000WorldwideValidated

Identifiers

Disease identifiers

FieldValue
Canonical namescapuloperoneal spinal muscular atrophy, autosomal dominant
Mondo IDMONDO:0008408
EFOEFO:1001992
OMIM181405
Orphanet431255
DOIDDOID:0111552
SNOMED CT230248006
UMLSC0751335
MedGen148283
GARD0010314
Is cancer (heuristic)no

Also known as: neurogenic scapuloperoneal amyotrophy, New England type · scapuloperoneal neuronopathy · scapuloperoneal spinal muscular atrophy · SPSMA

Data availability: 129 ClinVar variants · 2 GenCC gene-disease records.

Disease family

Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › autosomal genetic disease › autosomal dominant disease › scapuloperoneal spinal muscular atrophy, autosomal dominant

Related subtypes (191): autosomal dominant polycystic liver disease, cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1, tuberous sclerosis, Treacher-Collins syndrome, hereditary breast ovarian cancer syndrome, autosomal dominant polycystic kidney disease, Lynch syndrome, branchio-oto-renal syndrome, autosomal dominant Aarskog syndrome, acroosteolysis dominant type, ADULT syndrome, autosomal dominant Alport syndrome, amelogenesis imperfecta type 1B, Townes-Brocks syndrome, nevoid basal cell carcinoma syndrome, blepharophimosis, ptosis, and epicanthus inversus syndrome, autosomal dominant brachyolmia, branchiooculofacial syndrome, pheochromocytoma/paraganglioma syndrome 4, cataract-aberrant oral frenula-growth delay syndrome, cherubism, autosomal dominant chondrodysplasia punctata, autosomal dominant popliteal pterygium syndrome, blepharocheilodontic syndrome, cochleosaccular degeneration-cataract syndrome, renal coloboma syndrome, Beare-Stevenson cutis gyrata syndrome, autosomal dominant vibratory urticaria, neurohypophyseal diabetes insipidus, autosomal dominant Kenny-Caffey syndrome, Rapp-Hodgkin syndrome, Ehlers-Danlos syndrome, classic type, autosomal dominant Ehlers-Danlos syndrome, vascular type, multiple endocrine neoplasia type 1, Coffin-Siris syndrome 1, isolated congenital adermatoglyphia, Flynn-Aird syndrome, Frasier syndrome, hand-foot-genital syndrome, Holt-Oram syndrome, hyperkeratosis-hyperpigmentation syndrome, autosomal dominant ichthyosis vulgaris, hyper-IgE recurrent infection syndrome 1, autosomal dominant, autosomal dominant keratitis, autosomal dominant keratitis-ichthyosis-hearing loss syndrome, LADD syndrome, trichorhinophalangeal syndrome type II, Noonan syndrome with multiple lentigines, microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability, Marfan syndrome, melanoma, cutaneous malignant, susceptibility to, 2, autosomal dominant primary microcephaly, autosomal dominant progressive external ophthalmoplegia, monilethrix, Muir-Torre syndrome, autosomal dominant myoglobinuria, autosomal dominant centronuclear myopathy, nail-patella syndrome, multiple endocrine neoplasia type 2B, autosomal dominant omodysplasia, pheochromocytoma/paraganglioma syndrome 1, Pelger-Huet anomaly, multiple endocrine neoplasia type 2A, piebaldism, autosomal dominant medullary cystic kidney disease with or without hyperuricemia, generalized juvenile polyposis/juvenile polyposis coli, juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome, Peutz-Jeghers syndrome, contractures, pterygia, and spondylocarpotarsal fusion syndrome 1A, autosomal dominant distal renal tubular acidosis, retinoschisis, autosomal dominant, autosomal dominant Robinow syndrome, autosomal dominant sideroblastic anemia, spondyloepiphyseal dysplasia tarda, autosomal dominant, proximal symphalangism, calcaneonavicular coalition, thanatophoric dysplasia type 1, trichorhinophalangeal syndrome type I, Muckle-Wells syndrome, autosomal dominant hypophosphatemic rickets, von Hippel-Lindau disease, Denys-Drash syndrome, autosomal dominant severe congenital neutropenia, Costello syndrome, EEC syndrome, multiple cutaneous and mucosal venous malformations, diffuse nonepidermolytic palmoplantar keratoderma, Timothy syndrome, pheochromocytoma/paraganglioma syndrome 2, spondyloepimetaphyseal dysplasia with multiple dislocations, Brooke-Spiegler syndrome, macrocephaly-autism syndrome, pheochromocytoma/paraganglioma syndrome 3, Duane-radial ray syndrome, PCWH syndrome, heart-hand syndrome, Slovenian type, congenital stationary night blindness autosomal dominant 3, mandibulofacial dysostosis-microcephaly syndrome, multiple endocrine neoplasia type 4, juvenile cataract-microcornea-renal glucosuria syndrome, Crouzon syndrome-acanthosis nigricans syndrome, Birk-Barel syndrome, thrombophilia due to protein S deficiency, autosomal dominant, dyskeratosis congenita, autosomal dominant 2, dyskeratosis congenita, autosomal dominant 3, colorectal cancer, hereditary nonpolyposis, type 6, colorectal cancer, hereditary nonpolyposis, type 7, brain small vessel disease 2A, autosomal dominant, intellectual disability, autosomal dominant 14, intellectual disability, autosomal dominant 15, intellectual disability, autosomal dominant 16, hypopigmentation-punctate palmoplantar keratoderma syndrome, intellectual disability-facial dysmorphism syndrome due to SETD5 haploinsufficiency, postaxial polydactyly-anterior pituitary anomalies-facial dysmorphism syndrome, intellectual developmental disorder with microcephaly and with or without ocular malformations or hypogonadotropic hypogonadism, intellectual disability, autosomal dominant 29, intellectual disability, autosomal dominant 30, Houge-Janssens syndrome 2, severe achondroplasia-developmental delay-acanthosis nigricans syndrome, dyskeratosis congenita, autosomal dominant 6, epidermolysis bullosa simplex 6, generalized, with scarring and hair loss, autosomal dominant complex spastic paraplegia, early-onset autosomal dominant Alzheimer disease, muscular dystrophy, limb-girdle, autosomal dominant, Feingold syndrome, Carney complex, neuronopathy, distal hereditary motor, autosomal dominant, autosomal dominant coarctation of aorta, autosomal dominant spondylocostal dysostosis, autosomal dominant hypohidrotic ectodermal dysplasia, Cowden disease, autosomal dominant distal myopathy, autosomal dominant rhegmatogenous retinal detachment, palmoplantar keratoderma-spastic paralysis syndrome, Alagille syndrome due to a JAG1 point mutation, PTEN hamartoma tumor syndrome, gastric adenocarcinoma and proximal polyposis of the stomach, autosomal dominant proximal renal tubular acidosis, autosomal dominant spastic ataxia, Waardenburg syndrome, hereditary retinoblastoma, autosomal dominant hypocalcemia, Li-Fraumeni syndrome, Loeys-Dietz syndrome, hereditary hemorrhagic telangiectasia, hereditary inclusion body myopathy-joint contractures-ophthalmoplegia syndrome, microcephalic osteodysplastic dysplasia, Saul-Wilson type, autosomal dominant intermediate Charcot-Marie-Tooth disease, autosomal dominant cutis laxa, autosomal dominant nonsyndromic hearing loss, autosomal dominant optic atrophy, autosomal dominant Emery-Dreifuss muscular dystrophy, autosomal dominant cerebellar ataxia, autosomal dominant osteopetrosis, autosomal dominant epidermolytic ichthyosis, ventricular arrhythmias due to cardiac ryanodine receptor calcium release deficiency syndrome, distal arthrogryposis type 2B1, neurofibromatosis, autosomal dominant cataract, arthrogryposis, distal, type 2B2, arthrogryposis, distal, type 2B3, Charcot-Marie-Tooth disease, demyelinating, type 1G, Delpire-McNeill syndrome, LAMA5-related multisystemic syndrome, autosomal dominant oculocutaneous albinism, Charcot-Marie-tooth disease, axonal, type 2DD, Pilarowski-Bjornsson syndrome, intellectual disability, autosomal dominant, fatty acyl-CoA reductase 1 upregulation, GUCY2D-related dominant retinopathy, RPE65-related dominant retinopathy, autosomal dominant titinopathy, NOG-related symphalangism spectrum disorder, ALPL-related autosomal dominant hypophosphatasia, MYH10-related neurodevelopmental disorder with congenital anomalies, spastic paraplegia 30A, autosomal dominant, TMEM127-related tumor predisposition, MAX-related tumor predisposition, BMPR1A-related juvenile polyposis syndrome, RP1-related dominant retinopathy, Birt-Hogg-Dube syndrome, inclusion body myopathy and brain white matter abnormalities, KINSSHIP syndrome, autosomal dominant nebulin-related myopathy, IMPG1-related dominant retinopathy, PROM1-related dominant retinopathy, PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome, ALG8-related autosomal dominant polycystic kidney and/or liver disease, NOTCH1-related AOS spectrum disorder, FLNB-associated autosomal dominant filamin related bone disorder, familial antiphospholipid syndrome

Genetics & variants

GWAS landscape

No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.

Variant details and genetic-evidence tiers

ClinVar germline variants

129 retrieved; paginated sample, class counts are floors:

42 uncertain significance, 37 benign/likely benign, 31 conflicting classifications of pathogenicity, 13 benign, 3 pathogenic, 2 pathogenic/likely pathogenic, 1 likely pathogenic

ClinVarVariant (HGVS)GeneClassificationReview
18435NM_021625.5(TRPV4):c.2389G>A (p.Glu797Lys)TRPV4Pathogeniccriteria provided, multiple submitters, no conflicts
4999NM_021625.5(TRPV4):c.943C>T (p.Arg315Trp)TRPV4Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
5000NM_021625.5(TRPV4):c.806G>A (p.Arg269His)TRPV4Pathogenic/Likely pathogeniccriteria provided, multiple submitters, no conflicts
5001NM_021625.5(TRPV4):c.946C>T (p.Arg316Cys)TRPV4Pathogeniccriteria provided, multiple submitters, no conflicts
5002NM_021625.5(TRPV4):c.805C>T (p.Arg269Cys)TRPV4Pathogeniccriteria provided, multiple submitters, no conflicts
3899857NM_021625.5(TRPV4):c.1825_1891+5delTRPV4Likely pathogeniccriteria provided, single submitter
1784436NM_021625.5(TRPV4):c.2012T>C (p.Leu671Pro)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
215918NM_021625.5(TRPV4):c.1546A>G (p.Ile516Val)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
216733NM_021625.5(TRPV4):c.2605G>A (p.Ala869Thr)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
245716NM_021625.5(TRPV4):c.37G>T (p.Gly13Trp)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
245915NM_021625.5(TRPV4):c.1139C>T (p.Thr380Met)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
246534NM_021625.5(TRPV4):c.1390C>T (p.Arg464Cys)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
282949NM_021625.5(TRPV4):c.1491+10C>TTRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
307126NM_021625.5(TRPV4):c.1825-15C>GTRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
307132NM_021625.5(TRPV4):c.1211G>A (p.Arg404His)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
307134NM_021625.5(TRPV4):c.963C>A (p.Gly321=)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
307138NM_021625.5(TRPV4):c.650C>T (p.Ala217Val)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
307143NM_021625.5(TRPV4):c.205A>C (p.Met69Leu)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
307144NM_021625.5(TRPV4):c.171T>C (p.Pro57=)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
386671NM_021625.5(TRPV4):c.1038C>T (p.Tyr346=)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
409288NM_021625.5(TRPV4):c.1976C>T (p.Ser659Leu)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
448711NM_021625.5(TRPV4):c.523A>G (p.Thr175Ala)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
469047NM_021625.5(TRPV4):c.958C>T (p.Arg320Ter)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
499138NM_021625.5(TRPV4):c.2304G>C (p.Ser768=)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
517843NM_021625.5(TRPV4):c.651G>A (p.Ala217=)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
521109NM_021625.5(TRPV4):c.1376T>G (p.Leu459Arg)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
521669NM_021625.5(TRPV4):c.1700A>T (p.Tyr567Phe)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
536854NM_021625.5(TRPV4):c.2320C>T (p.Arg774Cys)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
578089NM_021625.5(TRPV4):c.1584C>T (p.Asn528=)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications
579640NM_021625.5(TRPV4):c.1392C>T (p.Arg464=)TRPV4Conflicting classifications of pathogenicitycriteria provided, conflicting classifications

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 19 · Orphanet: 9 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0

GenCC gene–disease validity (cohort genes)

the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.

GeneClassificationInheritanceDiseaseRecords
TRPV4ModerateAutosomal dominantscapuloperoneal spinal muscular atrophy, autosomal dominant19

Orphanet rare-disease linkage (cohort genes)

GeneOrphanet IDRare disease
TRPV4Orphanet:1216Autosomal dominant congenital benign spinal muscular atrophy
TRPV4Orphanet:263482Spondyloepimetaphyseal dysplasia, Maroteaux type
TRPV4Orphanet:2635Metatropic dysplasia
TRPV4Orphanet:431255Scapuloperoneal spinal muscular atrophy
TRPV4Orphanet:85169Familial digital arthropathy-brachydactyly
TRPV4Orphanet:86820Familial avascular necrosis of femoral head
TRPV4Orphanet:93304Autosomal dominant brachyolmia
TRPV4Orphanet:93314Spondylometaphyseal dysplasia, Kozlowski type
TRPV4Orphanet:99937Autosomal dominant Charcot-Marie-Tooth disease type 2C

Cohort genes → proteins

2 cohort genes, 1 distinct canonical proteins.

Evidence partition

SubsetGenes
multi_evidence2

Cohort genes (full)

SymbolHGNCEnsemblUniProtNameEvidence
TRPV4HGNC:18083ENSG00000111199Q9HBA0Transient receptor potential cation channel subfamily V member 4gencc,clinvar
MIR4497HGNC:41737ENSG00000263510microRNA 4497clinvar

Cohort function summary

Lead sentence per gene, UniProt-curated.

SymbolProtein nameFunction (lead sentence)
TRPV4Transient receptor potential cation channel subfamily V member 4Non-selective calcium permeant cation channel involved in osmotic sensitivity and mechanosensitivity.

Protein-family classification

Druggable: 1 · Difficult: 0 · Unknown: 1 · Druggable fraction: 0.5

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

FamilyGenesFoldFDR
Ion channel155.8×0.036
Other/Unknown10.9×0.805

Per-gene assignment

SymbolFamilyDruggable?ECInterPro (top 3)
TRPV4Ion channelyesAnkyrin_rpt, Ion_trans_dom, TrpV1-4
MIR4497Other/Unknownno

Expression context

Cohort genes with no expression data: 0.

1 cohort gene are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

BucketGenes
narrow (1-5 tissues)0
moderate (6-20)0
broad (>20)2
unknown0

Top tissues across cohort

TissueCohort genes
cartilage tissue1
lower esophagus mucosa1
olfactory segment of nasal mucosa1
blood1
monocyte1
myometrium1

Per-gene tissue summary (top 30)

SymbolBgee breadthFANTOM5 breadthSCXATop tissues
TRPV4171ubiquitousmarkercartilage tissue, lower esophagus mucosa, olfactory segment of nasal mucosa
MIR449729yesmyometrium, monocyte, blood

Protein interactions among cohort

Intra-cohort edges: 0.

Hub genes (top 10 by interactor count)

SymbolInteractor count
TRPV41,948
MIR44970

Structural data

PDB: 1 · AlphaFold-only: 0 · No structure: 1

Cohort genes with PDB structures (top 30)

SymbolUniProtPDB entries
TRPV4Q9HBA019

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 2. Enrichment computed across 2 evidence-associated genes (1 with Reactome annotation).

Pathways by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 1 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

PathwayCohort genesFoldFDRSample cohort genes
TRP channels1407.9×0.005TRPV4
High laminar flow shear stress activates signaling by PIEZO1 and PECAM1:CDH5:KDR in endothelial cells1160.8×0.006TRPV4

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 1 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO termCohort genesFoldFDRSample cohort genes
hyperosmotic salinity response116852.0×9e-04TRPV4
blood vessel endothelial cell delamination116852.0×9e-04TRPV4
vasopressin secretion18426.0×9e-04TRPV4
positive regulation of striated muscle contraction18426.0×9e-04TRPV4
regulation of response to osmotic stress18426.0×9e-04TRPV4
calcium ion import into cytosol18426.0×9e-04TRPV4
cellular hypotonic salinity response15617.3×0.001TRPV4
positive regulation of macrophage inflammatory protein 1 alpha production15617.3×0.001TRPV4
positive regulation of microtubule depolymerization13370.4×0.001TRPV4
positive regulation of chemokine (C-C motif) ligand 5 production12808.7×0.001TRPV4
negative regulation of brown fat cell differentiation12808.7×0.001TRPV4
positive regulation of chemokine (C-X-C motif) ligand 1 production12808.7×0.001TRPV4
cartilage development involved in endochondral bone morphogenesis12407.4×0.001TRPV4
regulation of aerobic respiration12106.5×0.002TRPV4
cortical microtubule organization11872.4×0.002TRPV4
multicellular organismal-level water homeostasis11685.2×0.002TRPV4
osmosensory signaling pathway11532.0×0.002TRPV4
diet induced thermogenesis11404.3×0.002TRPV4
cellular hypotonic response11404.3×0.002TRPV4
positive regulation of vascular permeability11296.3×0.002TRPV4
cellular response to osmotic stress11203.7×0.002TRPV4
positive regulation of monocyte chemotactic protein-1 production11203.7×0.002TRPV4
microtubule polymerization1887.0×0.002TRPV4
positive regulation of macrophage chemotaxis1802.5×0.002TRPV4
calcium ion import1802.5×0.002TRPV4
cell volume homeostasis1601.9×0.003TRPV4
calcium ion import across plasma membrane1543.6×0.003TRPV4
cell-cell junction assembly1443.5×0.004TRPV4
cellular response to heat1343.9×0.005TRPV4
response to mechanical stimulus1300.9×0.005TRPV4

Therapeutics

Drug target analysis

Approved (phase 4): 0 · Phase ≥3: 1 · Phased (≥1): 1 · Undrugged: 1

Druggability breadth: 1 of 2 evidence-associated genes (50%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Top cohort targets by molecule count

SymbolMoleculesMax phase
TRPV463
MIR449700

Drugs targeting cohort genes (top 30)

MoleculeMax phaseTargets in cohort
CANNABINOL3TRPV4
TETRAHYDROCANNABIVARIN2TRPV4
CANNABIDIVARIN2TRPV4
GSK27987452TRPV4
CANNABIGEROL2TRPV4
ABT-1021TRPV4

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 0.

Cohort genes with ChEMBL bioactivity (full, sorted by assay count)

SymbolAssaysType breakdown
TRPV499Binding:94, Functional:5

Pharmacogenomics

Cohort genes with a PharmGKB record: 1; with CPIC/DPWG dosing guidelines: 0.

No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).

Chemical tractability of cohort targets

6 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

CompoundMax phaseCohort target (bioactivity)
CANNABINOL3TRPV4
TETRAHYDROCANNABIVARIN2TRPV4
CANNABIDIVARIN2TRPV4
GSK27987452TRPV4
CANNABIGEROL2TRPV4
ABT-1021TRPV4

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

TierDefinitionGenesSymbols
AApproved (phase 4 drug)0
BPhased (≥1) drug, not yet approved1TRPV4
CDruggable family + PDB, no drug0
DDruggable family + AlphaFold only, no drug0
EDifficult family or no structure, no drug1MIR4497

Undrugged target profiles

1 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

SymbolChEMBL assaysDrugged partners (top 3)
MIR44970

Clinical trials & evidence

Clinical trials

Clinical trials: 0.