Spermatogenic failure 46

Summary

Spermatogenic failure 46 (MONDO:0033673) is a disease caused by DNAH8 (GenCC Strong), with 2 cohort genes.

At a glance

• Causal gene: DNAH8 (GenCC Strong)
• Cohort genes: 2
• ClinVar variants: 58

Clinical features

No curated clinical features (Orphanet) for this disease.

Identifiers

Disease identifiers

Field	Value
Canonical name	spermatogenic failure 46
Mondo ID	MONDO:0033673
OMIM	619095
DOID	DOID:0112164
UMLS	C5436799
MedGen	1726728
Is cancer (heuristic)	no

Also known as: SPGF46

Data availability: 58 ClinVar variants · 2 GenCC gene-disease records.

Disease family

Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › spermatogenic failure › spermatogenic failure 46

Related subtypes (112): spermatogenic failure 6, spermatogenic failure 2, spermatogenic failure 5, spermatogenic failure 1, spermatogenic failure 4, spermatogenic failure, X-linked, 2, spermatogenic failure, Y-linked, 1, spermatogenic failure, Y-linked, 2, spermatogenic failure 3, spermatogenic failure 7, spermatogenic failure 8, spermatogenic failure 9, spermatogenic failure 10, spermatogenic failure 11, spermatogenic failure 12, spermatogenic failure 13, spermatogenic failure 14, spermatogenic failure 15, spermatogenic failure 16, spermatogenic failure 17, spermatogenic failure 30, spermatogenic failure 31, spermatogenic failure 32, spermatogenic failure 54, spermatogenic failure, X-linked, 4, spermatogenic failure, X-linked, 3, spermatogenic failure 33, spermatogenic failure 34, spermatogenic failure 55, spermatogenic failure 56, spermatogenic failure 57, spermatogenic failure 58, spermatogenic failure 59, spermatogenic failure 60, spermatogenic failure 61, spermatogenic failure 62, spermatogenic failure 63, spermatogenic failure 64, spermatogenic failure 65, spermatogenic failure 66, spermatogenic failure 67, spermatogenic failure 68, spermatogenic failure 69, spermatogenic failure 70, spermatogenic failure 71, spermatogenic failure 72, spermatogenic failure 73, spermatogenic failure 47, spermatogenic failure 48, spermatogenic failure 49, spermatogenic failure 50, spermatogenic failure 51, spermatogenic failure 52, spermatogenic failure 74, spermatogenic failure 75, spermatogenic failure 53, spermatogenic failure 76, spermatogenic failure 77, spermatogenic failure 35, spermatogenic failure 36, spermatogenic failure 37, spermatogenic failure 38, spermatogenic failure 39, spermatogenic failure 40, spermatogenic failure 41, spermatogenic failure 42, spermatogenic failure 43, spermatogenic failure 44, spermatogenic failure 45, spermatogenic failure 18, spermatogenic failure 19, spermatogenic failure 20, spermatogenic failure 21, spermatogenic failure 22, spermatogenic failure 23, spermatogenic failure 24, spermatogenic failure 25, spermatogenic failure 26, spermatogenic failure 27, spermatogenic failure 28, spermatogenic failure 29, X-linked spermatogenic failure 1, spermatogenic failure 98, spermatogenic failure 78, spermatogenic failure 79, spermatogenic failure 80, spermatogenic failure, X-linked, 5, spermatogenic failure, X-linked, 6, spermatogenic failure 81, spermatogenic failure, X-linked, 7, spermatogenic failure 82, spermatogenic failure 83, spermatogenic failure 84, spermatogenic failure 85, spermatogenic failure 86, spermatogenic failure 87, spermatogenic failure 88, spermatogenic failure 89, spermatogenic failure 90, spermatogenic failure, X-linked, 8, spermatogenic failure 91, spermatogenic failure 92, spermatogenic failure 93, spermatogenic failure 94, spermatogenic failure 95, spermatogenic failure 96, spermatogenic failure 97, spermatogenic failure, X-linked, 9, spermatogenic failure 99, spermatogenic failure 100, spermatogenic failure 101, spermatogenic failure 102

Genetics & variants

GWAS landscape

No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.

Variant details and genetic-evidence tiers

ClinVar germline variants

58 retrieved; paginated sample, class counts are floors:

31 uncertain significance, 8 likely pathogenic, 5 likely benign, 4 pathogenic/likely pathogenic, 4 pathogenic, 3 conflicting classifications of pathogenicity, 2 benign/likely benign, 1 benign

ClinVar	Variant (HGVS)	Gene	Classification	Review
1073451	NM_001206927.2(DNAH8):c.12496C>T (p.Arg4166Ter)	DNAH8	Pathogenic/Likely pathogenic	criteria provided, multiple submitters, no conflicts
2175173	NM_001206927.2(DNAH8):c.3268C>T (p.Arg1090Ter)	DNAH8	Pathogenic/Likely pathogenic	criteria provided, multiple submitters, no conflicts
4849316	NM_001206927.2(DNAH8):c.12753_12756del (p.Asn4251fs)	DNAH8	Pathogenic	criteria provided, single submitter
525325	NM_001206927.2(DNAH8):c.3483_3489del (p.Thr1162fs)	DNAH8	Pathogenic/Likely pathogenic	criteria provided, multiple submitters, no conflicts
578003	NM_001206927.2(DNAH8):c.619C>T (p.Arg207Ter)	DNAH8	Pathogenic/Likely pathogenic	criteria provided, multiple submitters, no conflicts
984739	NM_001206927.2(DNAH8):c.6689A>G (p.Lys2230Arg)	DNAH8	Pathogenic	no assertion criteria provided
984742	NM_001206927.2(DNAH8):c.6962_6968del (p.His2321fs)	DNAH8	Pathogenic	criteria provided, single submitter
984743	NM_001206927.2(DNAH8):c.380_381del (p.Lys127fs)	DNAH8	Pathogenic	no assertion criteria provided
1516759	NM_001206927.2(DNAH8):c.5734-1G>T	DNAH8	Likely pathogenic	criteria provided, multiple submitters, no conflicts
3064687	NM_001206927.2(DNAH8):c.11422C>T (p.Gln3808Ter)	DNAH8	Likely pathogenic	criteria provided, single submitter
3065555	NM_001206927.2(DNAH8):c.7480-1G>A	DNAH8	Likely pathogenic	criteria provided, single submitter
3893100	NM_001206927.2(DNAH8):c.12536del (p.Val4179fs)	DNAH8	Likely pathogenic	criteria provided, single submitter
4845874	NM_001206927.2(DNAH8):c.3366del (p.Ala1123fs)	DNAH8	Likely pathogenic	criteria provided, single submitter
581044	NM_001206927.2(DNAH8):c.10963-1G>A	DNAH8	Likely pathogenic	criteria provided, multiple submitters, no conflicts
845380	NM_001206927.2(DNAH8):c.2664+2T>C	DNAH8	Likely pathogenic	criteria provided, multiple submitters, no conflicts
4845681	NM_001206927.2(DNAH8):c.418C>T (p.Arg140Ter)	LOC126859667	Likely pathogenic	criteria provided, single submitter
238655	NM_001206927.2(DNAH8):c.725G>A (p.Arg242His)	DNAH8	Conflicting classifications of pathogenicity	criteria provided, conflicting classifications
402771	NM_001206927.2(DNAH8):c.11771C>T (p.Thr3924Met)	DNAH8	Conflicting classifications of pathogenicity	criteria provided, conflicting classifications
414429	NM_001206927.2(DNAH8):c.13823C>T (p.Thr4608Met)	DNAH8	Conflicting classifications of pathogenicity	criteria provided, conflicting classifications
1381213	NM_001206927.2(DNAH8):c.5038A>G (p.Ser1680Gly)	DNAH8	Uncertain significance	criteria provided, multiple submitters, no conflicts
1408402	NM_001206927.2(DNAH8):c.10903C>T (p.Arg3635Trp)	DNAH8	Uncertain significance	criteria provided, single submitter
1449993	NM_001206927.2(DNAH8):c.6434A>G (p.Gln2145Arg)	DNAH8	Uncertain significance	criteria provided, multiple submitters, no conflicts
238638	NM_001206927.2(DNAH8):c.14059C>T (p.Arg4687Ter)	DNAH8	Uncertain significance	criteria provided, multiple submitters, no conflicts
2440919	NM_001206927.2(DNAH8):c.5768A>T (p.His1923Leu)	DNAH8	Uncertain significance	criteria provided, single submitter
2440920	NM_001206927.2(DNAH8):c.13546A>G (p.Asn4516Asp)	DNAH8	Uncertain significance	criteria provided, multiple submitters, no conflicts
2440921	NM_001206927.2(DNAH8):c.13082C>T (p.Pro4361Leu)	DNAH8	Uncertain significance	criteria provided, multiple submitters, no conflicts
2464465	NM_001206927.2(DNAH8):c.1759G>C (p.Glu587Gln)	DNAH8	Uncertain significance	criteria provided, multiple submitters, no conflicts
2716994	NM_001206927.2(DNAH8):c.12601A>G (p.Thr4201Ala)	DNAH8	Uncertain significance	criteria provided, multiple submitters, no conflicts
3593571	NM_001206927.2(DNAH8):c.2863G>A (p.Gly955Ser)	DNAH8	Uncertain significance	criteria provided, single submitter
3593572	NM_001206927.2(DNAH8):c.11024T>C (p.Ile3675Thr)	DNAH8	Uncertain significance	criteria provided, single submitter

Genes & proteins

Mendelian disease overlap and somatic drivers

GenCC: 4 · Orphanet: 0 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0

GenCC gene–disease validity (cohort genes)

the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.

Gene	Classification	Inheritance	Disease	Records
DNAH8	Strong	Autosomal recessive	spermatogenic failure 46	4

Cohort genes → proteins

2 cohort genes, 1 distinct canonical proteins.

Evidence partition

Subset	Genes
multi_evidence	2

Cohort genes (full)

Symbol	HGNC	Ensembl	UniProt	Name	Evidence
DNAH8	HGNC:2952	ENSG00000124721	Q96JB1	Dynein axonemal heavy chain 8	gencc,clinvar
DNAH8-AS1	HGNC:40188	ENSG00000231150		DNAH8 antisense RNA 1	clinvar

Cohort function summary

Lead sentence per gene, UniProt-curated.

Symbol	Protein name	Function (lead sentence)
DNAH8	Dynein axonemal heavy chain 8	Force generating protein component of the outer dynein arms (ODAs) in the sperm flagellum.

Protein-family classification

Druggable: 0 · Difficult: 0 · Unknown: 2 · Druggable fraction: 0.0

Family distribution

Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.

Family	Genes	Fold	FDR
Other/Unknown	2	1.8×	0.312

Per-gene assignment

Symbol	Family	Druggable?	EC	InterPro (top 3)
DNAH8	Other/Unknown	no		AAA+_ATPase, Dhc_D6_P-loop, Dynein_heavy_tail
DNAH8-AS1	Other/Unknown	no

Expression context

Cohort genes with no expression data: 0.

2 cohort genes are a single-cell marker in ≥1 SCXA experiment.

Breadth distribution (Bgee present_calls)

Bucket	Genes
narrow (1-5 tissues)	0
moderate (6-20)	0
broad (>20)	2
unknown	0

Top tissues across cohort

Tissue	Cohort genes
male germ line stem cell (sensu Vertebrata) in testis	2
adult organism	1
sperm	1
left testis	1
testis	1

Per-gene tissue summary (top 30)

Symbol	Bgee breadth	FANTOM5 breadth	SCXA	Top tissues
DNAH8	68	tissue_specific	marker	sperm, male germ line stem cell (sensu Vertebrata) in testis, adult organism
DNAH8-AS1	75	tissue_specific	marker	male germ line stem cell (sensu Vertebrata) in testis, left testis, testis

Protein interactions among cohort

Intra-cohort edges: 0.

Hub genes (top 10 by interactor count)

Symbol	Interactor count
DNAH8	1,631
DNAH8-AS1	0

Structural data

PDB: 0 · AlphaFold-only: 1 · No structure: 1

AlphaFold-only cohort genes (top 30 by pLDDT)

Symbol	UniProt	pLDDT
DNAH8	Q96JB1

Function

Pathway analysis

Distinct Reactome pathways touched by cohort: 0. Enrichment computed across 2 evidence-associated genes (0 with Reactome annotation).

GO biological processes by enrichment

Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 1 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.

GO term	Cohort genes	Fold	FDR	Sample cohort genes
cilium-dependent cell motility	1	1404.3×	0.001	DNAH8
outer dynein arm assembly	1	732.7×	0.001	DNAH8
cilium movement involved in cell motility	1	674.1×	0.001	DNAH8

Therapeutics

Drug target analysis

Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 0 · Undrugged: 2

Druggability breadth: 0 of 2 evidence-associated genes (0%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).

Top cohort targets by molecule count

Symbol	Molecules	Max phase
DNAH8	0	0
DNAH8-AS1	0	0

Bioactivity and enzyme data

Enzyme cohort genes (≥1 EC): 0.

Pharmacogenomics

Cohort genes with a PharmGKB record: 1; with CPIC/DPWG dosing guidelines: 0.

No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).

Chemical tractability of cohort targets

0 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.

Druggability pyramid

Cohort genes binned by druggability tier (high → low):

Tier	Definition	Genes	Symbols
A	Approved (phase 4 drug)	0
B	Phased (≥1) drug, not yet approved	0
C	Druggable family + PDB, no drug	0
D	Druggable family + AlphaFold only, no drug	0
E	Difficult family or no structure, no drug	2	DNAH8, DNAH8-AS1

Undrugged target profiles

2 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).

Symbol	ChEMBL assays	Drugged partners (top 3)
DNAH8	0	—
DNAH8-AS1	0	—

Clinical trials & evidence

Clinical trials

Clinical trials: 0.