Summary
Thoracic aortic aneurysm (MONDO:0005396) is a disease caused by ARIH1 (GenCC Strong), with 24 cohort genes (33 GWAS associations across 8 studies) and 57 clinical trials. The dominant Reactome pathway is Loss of Function of TGFBR1 in Cancer (3 cohort genes). Top therapeutic interventions include iopamidol, spironolactone, and carbon dioxide.
At a glance
- Causal gene: ARIH1 (GenCC Strong)
- Cohort genes: 24
- GWAS associations: 33
- ClinVar variants: 17
- Clinical trials: 57
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|
| Canonical name | thoracic aortic aneurysm |
| Mondo ID | MONDO:0005396 |
| EFO | EFO:0004282 |
| MeSH | D017545 |
| DOID | DOID:14004 |
| ICD-11 | 1383534118 |
| SNOMED CT | 433068007 |
| UMLS | C0162872 |
| MedGen | 56525 |
| Is cancer (heuristic) | no |
Data availability: 17 ClinVar variants · 33 GWAS associations (8 studies) · 3 GenCC gene-disease records · 1 cell line.
Disease family
Classification path: disease › human disease › disease by body system or component › cardiovascular disorder › vascular disorder › arterial disorder › aortic disorder › aortic aneurysm › thoracic aortic aneurysm
Related subtypes (1): abdominal aortic aneurysm
Genetics & variants
GWAS landscape
33 GWAS associations across 8 studies. Top hits map to 20 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|
| rs7866503 | 2e-13 | CDKN2B-AS1 | T | 1.26 |
| rs1036476 | 6e-13 | FBN1 | ? | 1.9 |
| rs8087799 | 2e-09 | RPS4XP18 - RBBP8-AS1 | A | 1.21 |
| rs7904519 | 3e-09 | TCF7L2 | G | 0.09 |
| rs4073288 | 5e-09 | RPS15AP30, TCF7L2 | A | 0.1 |
| rs4074718 | 6e-09 | TCF7L2 | A | 0.09 |
| rs595244 | 1e-08 | FBN1 | T | 1.35 |
| rs149014140 | 2e-08 | CTNNA3 | ? | 4.27 |
| rs148927240 | 2e-08 | OR7E159P - GNG2 | ? | 4.23 |
| chrX:144499488 | 2e-08 | | ? | 0.49 |
| rs78851735 | 4e-08 | MBP | ? | 3.45 |
| rs919433 | 5e-08 | ANKRD44-IT1, ANKRD44 | A | 1.18 |
| rs117892132 | 7e-08 | CTNNA3 | ? | 4.28 |
| rs190411362 | 8e-08 | CTNNA3 | ? | 4.28 |
| rs574212135 | 3e-07 | CASC15, NBAT1 | ? | 4.07 |
| rs72996095 | 5e-07 | CNTN4 | ? | 2.18 |
| rs689304 | 5e-07 | FBN1 | ? | 1.64 |
| rs2448858 | 6e-07 | UBE2V1P16 - RPL3P12 | ? | 1.65 |
| rs117755454 | 6e-07 | GABRG3 | ? | 4.52 |
| rs12115792 | 7e-07 | Y_RNA - PTPN3 | ? | 1.6 |
| rs548407431 | 7e-07 | LINC00540 - FTH1P7 | ? | 4.26 |
| rs12494537 | 8e-07 | RN7SL553P - MTARC2P1 | ? | 1.54 |
| rs61129840 | 8e-07 | OXNAD1, RFTN1 | ? | 2.6 |
| rs142262004 | 8e-07 | TRIM36 | ? | 3.84 |
| rs181551370 | 1e-06 | HERC4 | ? | 3.89 |
| rs55654928 | 3e-06 | ZNF630, ZNF182, ZNF81 | ? | 1.25 |
| chrX:47985570 | 4e-06 | | ? | 1.3 |
| rs3020167 | 5e-06 | RAD21-AS1 - AARD | ? | 6.5 |
| rs1432302 | 6e-06 | LINC01823 - LINC01826 | ? | 5.1 |
| rs141193095 | 7e-06 | AFF2 - IDS | ? | 1.54 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|
| GCST003683 | van ’t Hof FN | 2016 | 1,516 | 9,507 | Shared Genetic Risk Factors of Intracranial, Abdominal, and Thoracic Aneurysms. |
| GCST90027266 | Roychowdhury T | 2021 | 1,351 | 18,295 | Regulatory variants in TCF7L2 are associated with thoracic aortic aneurysm. |
| GCST90840656 | Musfee FI | 2024 | 880 | 440,975 | X-linked genetic associations in sporadic thoracic aortic dissection. |
| GCST001229 | LeMaire SA | 2011 | 765 | 0 | Genome-wide association study identifies a susceptibility locus for thoracic aortic aneurysms and aortic dissections spanning FBN1 at 15q21.1. |
| GCST90840655 | Musfee FI | 2024 | 516 | 440,101 | X-linked genetic associations in sporadic thoracic aortic dissection. |
| GCST90840654 | Musfee FI | 2024 | 364 | 0 | X-linked genetic associations in sporadic thoracic aortic dissection. |
| GCST006957 | Aubart M | 2018 | 51 | 0 | Association of modifiers and other genetic factors explain Marfan syndrome clinical variability. |
| GCST90038469 | Ashvetiya T | 2021 | 0 | 0 | Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|
| Tier 1: coding | 0 |
| Tier 2: splice/UTR | 0 |
| Tier 3: regulatory | 2 |
| Tier 4: intronic/intergenic | 31 |
MAF distribution
| Bucket | Variants |
|---|
| common (>=0.05) | 20 |
| low_freq (0.01-0.05) | 0 |
| rare (<0.01) | 0 |
| unknown | 13 |
Functional consequences
| Consequence | Count |
|---|
| intron_variant | 21 |
| intergenic_variant | 5 |
| unknown | 3 |
| non_coding_transcript_exon_variant | 2 |
| regulatory_region_variant | 2 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|
| rs7866503 | 9 | 22091925 | G>A,C,T | 0.416 | intron_variant | CDKN2B-AS1 | 2e-13 | Tier 4: intronic/intergenic |
| rs1036476 | 15 | 48622578 | T>C | 0.05 | intron_variant | FBN1 | 6e-13 | Tier 4: intronic/intergenic |
| rs8087799 | 18 | 22605468 | G>A,T | 0.324 | intergenic_variant | RPS4XP18 - RBBP8-AS1 | 2e-09 | Tier 4: intronic/intergenic |
| rs7904519 | 10 | 113014168 | A>C,G | 0.05 | intron_variant | TCF7L2 | 3e-09 | Tier 4: intronic/intergenic |
| rs4073288 | 10 | 112987518 | G>A | 0.05 | non_coding_transcript_exon_variant | RPS15AP30, TCF7L2 | 5e-09 | Tier 4: intronic/intergenic |
| rs4074718 | 10 | 112988858 | G>A | 0.05 | intron_variant | TCF7L2 | 6e-09 | Tier 4: intronic/intergenic |
| rs595244 | 15 | 48548638 | C>T | 0.082 | intron_variant | FBN1 | 1e-08 | Tier 4: intronic/intergenic |
| rs149014140 | 10 | 67103539 | A>G | | intron_variant | CTNNA3 | 2e-08 | Tier 4: intronic/intergenic |
| rs148927240 | 14 | 51772792 | G>A,C | | intron_variant | OR7E159P - GNG2 | 2e-08 | Tier 4: intronic/intergenic |
| chrX:144499488 | | | | | | | 2e-08 | Tier 4: intronic/intergenic |
| rs78851735 | 18 | 77062724 | C>T | | non_coding_transcript_exon_variant | MBP | 4e-08 | Tier 4: intronic/intergenic |
| rs919433 | 2 | 197301841 | G>A,C | 0.416 | intron_variant | ANKRD44-IT1, ANKRD44 | 5e-08 | Tier 4: intronic/intergenic |
| rs117892132 | 10 | 67676236 | C>A | | intron_variant | CTNNA3 | 7e-08 | Tier 4: intronic/intergenic |
| rs190411362 | 10 | 67267290 | G>A | | intron_variant | CTNNA3 | 8e-08 | Tier 4: intronic/intergenic |
| rs574212135 | 6 | 22218875 | GATT>G | | intron_variant | CASC15, NBAT1 | 3e-07 | Tier 4: intronic/intergenic |
| rs72996095 | 3 | 2419935 | T>G | 0.05 | intron_variant | CNTN4 | 5e-07 | Tier 4: intronic/intergenic |
| rs689304 | 15 | 48630163 | C>T | 0.05 | intron_variant | FBN1 | 5e-07 | Tier 4: intronic/intergenic |
| rs2448858 | X | 122316232 | C>G,T | 0.05 | intergenic_variant | UBE2V1P16 - RPL3P12 | 6e-07 | Tier 4: intronic/intergenic |
| rs117755454 | 15 | 27511502 | C>G | | intron_variant | GABRG3 | 6e-07 | Tier 4: intronic/intergenic |
| rs12115792 | 9 | 109346054 | A>G,T | 0.05 | regulatory_region_variant | Y_RNA - PTPN3 | 7e-07 | Tier 3: regulatory |
| rs548407431 | 13 | 22338699 | G>A | | intergenic_variant | LINC00540 - FTH1P7 | 7e-07 | Tier 4: intronic/intergenic |
| rs12494537 | 3 | 5975615 | C>G,T | 0.05 | intron_variant | RN7SL553P - MTARC2P1 | 8e-07 | Tier 4: intronic/intergenic |
| rs61129840 | 3 | 16322022 | G>A | 0.05 | intron_variant | OXNAD1, RFTN1 | 8e-07 | Tier 4: intronic/intergenic |
| rs142262004 | 5 | 115134742 | G>A | | intron_variant | TRIM36 | 8e-07 | Tier 4: intronic/intergenic |
| rs181551370 | 10 | 67977930 | G>A | | intron_variant | HERC4 | 1e-06 | Tier 4: intronic/intergenic |
| rs55654928 | X | 47985570 | A>G,T | 0.05 | intron_variant | ZNF630, ZNF182, ZNF81 | 3e-06 | Tier 4: intronic/intergenic |
| chrX:47985570 | | | | | | | 4e-06 | Tier 4: intronic/intergenic |
| rs3020167 | 8 | 116916586 | C>G,T | 0.05 | intergenic_variant | RAD21-AS1 - AARD | 5e-06 | Tier 4: intronic/intergenic |
| rs1432302 | 2 | 122195574 | C>T | 0.05 | intron_variant | LINC01823 - LINC01826 | 6e-06 | Tier 4: intronic/intergenic |
| rs141193095 | X | 149210161 | C>A,T | 0.05 | intergenic_variant | AFF2 - IDS | 7e-06 | Tier 4: intronic/intergenic |
ClinVar germline variants
17 retrieved; paginated sample, class counts are floors:
5 benign, 4 likely pathogenic, 3 benign/likely benign, 2 conflicting classifications of pathogenicity, 2 uncertain significance, 1 likely benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|
| 1184828 | Single allele | BLK | Likely pathogenic | no assertion criteria provided |
| 1184826 | NM_019055.6(ROBO4):c.2389G>T (p.Glu797Ter) | ROBO4 | Likely pathogenic | no assertion criteria provided |
| 1184827 | NM_019055.6(ROBO4):c.703G>A (p.Val235Met) | ROBO4 | Likely pathogenic | no assertion criteria provided |
| 1184825 | NM_005585.5(SMAD6):c.86G>C (p.Gly29Ala) | SMAD6 | Likely pathogenic | no assertion criteria provided |
| 1174575 | NM_005585.5(SMAD6):c.572T>C (p.Leu191Pro) | SMAD6 | Conflicting classifications of pathogenicity | no assertion criteria provided |
| 44651 | NM_003242.6(TGFBR2):c.1159G>A (p.Val387Met) | TGFBR2 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 2922623 | NM_000138.5(FBN1):c.6880G>A (p.Glu2294Lys) | FBN1 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 477540 | NM_003242.6(TGFBR2):c.1436G>A (p.Arg479Gln) | TGFBR2 | Uncertain significance | criteria provided, multiple submitters, no conflicts |
| 136279 | NM_001613.4(ACTA2):c.370-19T>C | ACTA2 | Benign | criteria provided, multiple submitters, no conflicts |
| 239099 | NM_001308093.3(GATA4):c.1235C>T (p.Ala412Val) | GATA4 | Benign/Likely benign | criteria provided, multiple submitters, no conflicts |
| 409041 | NM_017617.5(NOTCH1):c.2806G>A (p.Gly936Ser) | NOTCH1 | Likely benign | criteria provided, single submitter |
| 139212 | NM_005902.4(SMAD3):c.508A>G (p.Ile170Val) | SMAD3 | Benign/Likely benign | criteria provided, multiple submitters, no conflicts |
| 139217 | NM_005902.4(SMAD3):c.309A>G (p.Leu103=) | SMAD3 | Benign | criteria provided, multiple submitters, no conflicts |
| 165381 | NM_004612.4(TGFBR1):c.52GCG[6] (p.Ala24_Ala26del) | TGFBR1 | Benign/Likely benign | criteria provided, multiple submitters, no conflicts |
| 36867 | NM_003242.6(TGFBR2):c.263+7A>G | TGFBR2 | Benign | criteria provided, multiple submitters, no conflicts |
| 44652 | NM_003242.6(TGFBR2):c.1167C>T (p.Asn389=) | TGFBR2 | Benign | criteria provided, multiple submitters, no conflicts |
| 44658 | NM_003242.6(TGFBR2):c.455-4T>A | TGFBR2 | Benign | criteria provided, multiple submitters, no conflicts |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 11 · Orphanet: 56 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 2
Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)
| Gene | HGNC | Evidence routes |
|---|
| FBN1 | FBN1 | GWAS, Orphanet |
| SMAD6 | SMAD6 | GWAS, Orphanet |
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|
| ARIH1 | Strong | Autosomal dominant | thoracic aortic aneurysm | |
| MAT2A | Moderate | Autosomal dominant | thoracic aortic aneurysm | |
| EFEMP2 | Limited | Autosomal dominant | thoracic aortic aneurysm | 9 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|
| FBN1 | Orphanet:1885 | Isolated ectopia lentis |
| FBN1 | Orphanet:2084 | Glaucoma-ectopia lentis-microspherophakia-stiff joints-short stature syndrome |
| FBN1 | Orphanet:2462 | Shprintzen-Goldberg syndrome |
| FBN1 | Orphanet:2623 | Geleophysic dysplasia |
| FBN1 | Orphanet:2833 | Stiff skin syndrome |
| FBN1 | Orphanet:284963 | Marfan syndrome type 1 |
| FBN1 | Orphanet:284979 | Neonatal Marfan syndrome |
| FBN1 | Orphanet:300382 | Progeroid and marfanoid aspect-lipodystrophy syndrome |
| FBN1 | Orphanet:3449 | Weill-Marchesani syndrome |
| FBN1 | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| FBN1 | Orphanet:969 | Acromicric dysplasia |
| SMAD6 | Orphanet:402075 | Familial bicuspid aortic valve |
| EFEMP2 | Orphanet:314718 | Lethal arteriopathy syndrome due to fibulin-4 deficiency |
| EFEMP2 | Orphanet:90349 | Autosomal recessive cutis laxa type 1 |
| EFEMP2 | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| MAT2A | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| BLK | Orphanet:536 | Systemic lupus erythematosus |
| BLK | Orphanet:552 | MODY |
| TGFBR1 | Orphanet:284973 | Marfan syndrome type 2 |
| TGFBR1 | Orphanet:60030 | Loeys-Dietz syndrome |
| TGFBR1 | Orphanet:65748 | Multiple self-healing squamous epithelioma |
| TGFBR1 | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| TGFBR2 | Orphanet:144 | Lynch syndrome |
| TGFBR2 | Orphanet:284973 | Marfan syndrome type 2 |
| TGFBR2 | Orphanet:60030 | Loeys-Dietz syndrome |
| TGFBR2 | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| TGFBR2 | Orphanet:99977 | Squamous cell carcinoma of the esophagus |
| ACTA2 | Orphanet:2573 | Moyamoya disease |
| ACTA2 | Orphanet:404463 | Multisystemic smooth muscle dysfunction syndrome |
| ACTA2 | Orphanet:91387 | Familial thoracic aortic aneurysm and aortic dissection |
| CDKN2A | Orphanet:1333 | Familial pancreatic carcinoma |
| CDKN2A | Orphanet:1501 | Adrenocortical carcinoma |
| CDKN2A | Orphanet:252206 | Melanoma and neural system tumor syndrome |
| CDKN2A | Orphanet:404560 | Familial atypical multiple mole melanoma syndrome |
| CDKN2A | Orphanet:524 | Li-Fraumeni syndrome |
| CDKN2A | Orphanet:585909 | B-lymphoblastic leukemia/lymphoma with t(9;22)(q34.1;q11.2) |
| CDKN2A | Orphanet:618 | Familial melanoma |
| CDKN2A | Orphanet:99861 | Precursor T-cell acute lymphoblastic leukemia |
| CDKN2B | Orphanet:618 | Familial melanoma |
| CDKN2B | Orphanet:652 | Multiple endocrine neoplasia type 1 |
| ROBO4 | Orphanet:402075 | Familial bicuspid aortic valve |
| GATA4 | Orphanet:251071 | 8p23.1 microdeletion syndrome |
| GATA4 | Orphanet:251510 | 46,XY partial gonadal dysgenesis |
| GATA4 | Orphanet:3303 | Tetralogy of Fallot |
| GATA4 | Orphanet:334 | Hereditary atrial fibrillation |
| GATA4 | Orphanet:576232 | Partial atrioventricular septal defect with ventricular hypoplasia |
| GATA4 | Orphanet:99067 | Complete atrioventricular septal defect with ventricular hypoplasia |
| GATA4 | Orphanet:99068 | Complete atrioventricular septal defect-tetralogy of Fallot |
| GATA4 | Orphanet:99103 | Atrial septal defect, ostium secundum type |
| SMAD3 | Orphanet:284984 | Aneurysm-osteoarthritis syndrome |
Cohort genes → proteins
24 cohort genes, 22 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|
| gwas_only | 11 |
| gwas_and_clinvar | 2 |
| multi_evidence | 11 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|
| FBN1 | HGNC:3603 | ENSG00000166147 | P35555 | Fibrillin-1 | gwas,clinvar |
| SMAD6 | HGNC:6772 | ENSG00000137834 | O43541 | SMAD family member 6 | gwas,clinvar |
| EFEMP2 | HGNC:3219 | ENSG00000172638 | O95967 | EGF-containing fibulin-like extracellular matrix protein 2 | gencc |
| ARIH1 | HGNC:689 | ENSG00000166233 | Q9Y4X5 | E3 ubiquitin-protein ligase ARIH1 | gencc |
| MAT2A | HGNC:6904 | ENSG00000168906 | P31153 | S-adenosylmethionine synthase isoform type-2 | gencc |
| BLK | HGNC:1057 | ENSG00000136573 | P51451 | Tyrosine-protein kinase Blk | clinvar |
| TGFBR1 | HGNC:11772 | ENSG00000106799 | P36897 | TGF-beta receptor type-1 | clinvar |
| TGFBR2 | HGNC:11773 | ENSG00000163513 | P37173 | TGF-beta receptor type-2 | clinvar |
| ACTA2 | HGNC:130 | ENSG00000107796 | P62736 | Actin, aortic smooth muscle | clinvar |
| LCTL | HGNC:15583 | ENSG00000188501 | Q6UWM7 | Lactase-like protein | gwas |
| CDKN2A | HGNC:1787 | ENSG00000147889 | P42771 | Cyclin-dependent kinase inhibitor 2A | gwas |
| CDKN2B | HGNC:1788 | ENSG00000147883 | P42772 | Cyclin-dependent kinase 4 inhibitor B | gwas |
| ROBO4 | HGNC:17985 | ENSG00000154133 | Q8WZ75 | Roundabout homolog 4 | clinvar |
| COL16A1 | HGNC:2193 | ENSG00000084636 | Q07092 | Collagen alpha-1(XVI) chain | gwas |
| ANKRD44 | HGNC:25259 | ENSG00000065413 | Q8N8A2 | Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B | gwas |
| PEF1 | HGNC:30009 | ENSG00000162517 | Q9UBV8 | Peflin | gwas |
| RAD21-AS1 | HGNC:32158 | ENSG00000253327 | | RAD21 antisense RNA 1 | gwas |
| AARD | HGNC:33842 | ENSG00000205002 | Q4LEZ3 | Alanine- and arginine-rich domain-containing protein | gwas |
| CDKN2B-AS1 | HGNC:34341 | ENSG00000240498 | | CDKN2B and CDKN2A antisense cis and trans regulatory RNA 1 | gwas |
| GATA4 | HGNC:4173 | ENSG00000136574 | P43694 | Transcription factor GATA-4 | clinvar |
| SMAD3 | HGNC:6769 | ENSG00000166949 | P84022 | SMAD family member 3 | clinvar |
| NOTCH1 | HGNC:7881 | ENSG00000148400 | P46531 | Neurogenic locus notch homolog protein 1 | clinvar |
| ADGRB2 | HGNC:944 | ENSG00000121753 | O60241 | Adhesion G protein-coupled receptor B2 | gwas |
| RBBP8 | HGNC:9891 | ENSG00000101773 | Q99708 | DNA endonuclease RBBP8 | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|
| FBN1 | Fibrillin-1 | Structural component of the 10-12 nm diameter microfibrils of the extracellular matrix, which conveys both structural and regulatory properties to load-bearing connective tissues. |
| SMAD6 | SMAD family member 6 | Transforming growth factor-beta superfamily receptors signaling occurs through the Smad family of intracellular mediators. |
| EFEMP2 | EGF-containing fibulin-like extracellular matrix protein 2 | Plays a crucial role in elastic fiber formation in tissue, and in the formation of ultrastructural connections between elastic laminae and smooth muscle cells in the aorta, therefore participates in terminal differentiation and maturation… |
| ARIH1 | E3 ubiquitin-protein ligase ARIH1 | E3 ubiquitin-protein ligase, which catalyzes ubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 UBE2L3. |
| MAT2A | S-adenosylmethionine synthase isoform type-2 | Catalyzes the formation of S-adenosylmethionine from methionine and ATP. |
| BLK | Tyrosine-protein kinase Blk | Non-receptor tyrosine kinase involved in B-lymphocyte development, differentiation and signaling. |
| TGFBR1 | TGF-beta receptor type-1 | Transmembrane serine/threonine kinase forming with the TGF-beta type II serine/threonine kinase receptor, TGFBR2, the non-promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. |
| TGFBR2 | TGF-beta receptor type-2 | Transmembrane serine/threonine kinase forming with the TGF-beta type I serine/threonine kinase receptor, TGFBR1, the non-promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. |
| ACTA2 | Actin, aortic smooth muscle | Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. |
| LCTL | Lactase-like protein | Plays a role in formation of the lens suture in the eye, which is important for normal optical properties of the lens. |
| CDKN2A | Cyclin-dependent kinase inhibitor 2A | Acts as a negative regulator of the proliferation of normal cells by interacting strongly with CDK4 and CDK6. |
| CDKN2B | Cyclin-dependent kinase 4 inhibitor B | Interacts strongly with CDK4 and CDK6. |
| ROBO4 | Roundabout homolog 4 | Receptor for Slit proteins, at least for SLIT2, and seems to be involved in angiogenesis and vascular patterning. |
| COL16A1 | Collagen alpha-1(XVI) chain | Involved in mediating cell attachment and inducing integrin-mediated cellular reactions, such as cell spreading and alterations in cell morphology. |
| ANKRD44 | Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B | Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. |
| PEF1 | Peflin | Calcium-binding protein that acts as an adapter that bridges unrelated proteins or stabilizes weak protein-protein complexes in response to calcium. |
| GATA4 | Transcription factor GATA-4 | Transcriptional activator that binds to the consensus sequence 5’-AGATAG-3’ and plays a key role in cardiac development and function. |
| SMAD3 | SMAD family member 3 | Receptor-regulated SMAD (R-SMAD) that is an intracellular signal transducer and transcriptional modulator activated by TGF-beta (transforming growth factor) and activin type 1 receptor kinases. |
| NOTCH1 | Neurogenic locus notch homolog protein 1 | Functions as a receptor for membrane-bound ligands Jagged-1 (JAG1), Jagged-2 (JAG2) and Delta-1 (DLL1) to regulate cell-fate determination. |
| ADGRB2 | Adhesion G protein-coupled receptor B2 | Orphan G-protein coupled receptor involved in cell adhesion and probably in cell-cell interactions. |
| RBBP8 | DNA endonuclease RBBP8 | Endonuclease that cooperates with the MRE11-RAD50-NBN (MRN) complex in DNA-end resection, the first step of double-strand break (DSB) repair through the homologous recombination (HR) pathway. |
Protein-family classification
Druggable: 6 · Difficult: 6 · Unknown: 12 · Druggable fraction: 0.25
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|
| Kinase | 3 | 3.5× | 0.189 |
| Scaffold/PPI | 4 | 2.9× | 0.189 |
| Antibody/Immunoglobulin | 1 | 1.2× | 0.876 |
| GPCR | 1 | 1.0× | 0.876 |
| Other/Unknown | 12 | 0.9× | 0.876 |
| Transcription factor | 2 | 0.7× | 0.876 |
| Enzyme (other) | 1 | 0.5× | 0.876 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|
| FBN1 | Other/Unknown | no | | EGF-type_Asp/Asn_hydroxyl_site, EGF, EGF-like_Ca-bd_dom |
| SMAD6 | Other/Unknown | no | | SMAD_dom, MAD_homology1_Dwarfin-type, SMAD_FHA_dom_sf |
| EFEMP2 | Other/Unknown | no | | EGF-type_Asp/Asn_hydroxyl_site, EGF, EGF-like_Ca-bd_dom |
| ARIH1 | Transcription factor | no | 2.3.2.27 | Znf_RING, IBR_dom, Znf_RING/FYVE/PHD |
| MAT2A | Enzyme (other) | yes | 2.5.1.6 | S-AdoMet_synthetase, S-AdoMet_synt_N, S-AdoMet_synt_central |
| BLK | Kinase | yes | 2.7.10.2 | Prot_kinase_dom, SH2, Ser-Thr/Tyr_kinase_cat_dom |
| TGFBR1 | Kinase | yes | 2.7.10.2 | TGFB_receptor, Activin_recp, Prot_kinase_dom |
| TGFBR2 | Kinase | yes | 2.7.10.2 | TGFB_receptor, Prot_kinase_dom, Ser-Thr/Tyr_kinase_cat_dom |
| ACTA2 | Other/Unknown | no | | Actin, Actin_CS, Actin/actin-like_CS |
| LCTL | Other/Unknown | no | | Glyco_hydro_1, GH_hydrolase_sf, Glyco_hydro_1_AS |
| CDKN2A | Scaffold/PPI | no | | Ankyrin_rpt-contain_sf, Ank_Repeat/CDKN_Inhibitor, Tumor_suppres_ARF |
| CDKN2B | Scaffold/PPI | no | | Ankyrin_rpt, Ankyrin_rpt-contain_sf, Ank_Repeat/CDKN_Inhibitor |
| ROBO4 | Antibody/Immunoglobulin | yes | | Ig_sub2, Ig_sub, FN3_dom |
| COL16A1 | Other/Unknown | no | | Collagen, ConA-like_dom_sf, TSPN-like_N |
| ANKRD44 | Scaffold/PPI | no | | Ankyrin_rpt, Ankyrin_rpt-contain_sf |
| PEF1 | Other/Unknown | no | | EF_hand_dom, EF-hand-dom_pair, EF_Hand_1_Ca_BS |
| RAD21-AS1 | Other/Unknown | no | | |
| AARD | Other/Unknown | no | | FAM167_domain |
| CDKN2B-AS1 | Other/Unknown | no | | |
| GATA4 | Transcription factor | no | | Znf_GATA, GATA_N, Znf_NHR/GATA |
| SMAD3 | Other/Unknown | no | | SMAD_dom, MAD_homology1_Dwarfin-type, SMAD_FHA_dom_sf |
| NOTCH1 | Scaffold/PPI | no | | EGF-type_Asp/Asn_hydroxyl_site, EGF, Notch_dom |
| ADGRB2 | GPCR | yes | | GPS, GPCR_2_secretin-like, TSP1_rpt |
| RBBP8 | Other/Unknown | no | | Ctp1_C, CtIP_N, RBBP8-like |
Expression context
Cohort genes with no expression data: 0.
22 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 24 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|
| male germ line stem cell (sensu Vertebrata) in testis | 3 |
| tibia | 3 |
| tendon of biceps brachii | 2 |
| cortical plate | 2 |
| left lobe of thyroid gland | 2 |
| right lobe of thyroid gland | 2 |
| saphenous vein | 2 |
| visceral pleura | 2 |
| buccal mucosa cell | 2 |
| cartilage tissue | 2 |
| decidua | 1 |
| skin of hip | 1 |
| synovial joint | 1 |
| metanephric glomerulus | 1 |
| renal glomerulus | 1 |
| right lung | 1 |
| ascending aorta | 1 |
| stromal cell of endometrium | 1 |
| oocyte | 1 |
| secondary oocyte | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|
| FBN1 | 275 | ubiquitous | marker | synovial joint, skin of hip, decidua |
| SMAD6 | 277 | ubiquitous | marker | right lung, renal glomerulus, metanephric glomerulus |
| EFEMP2 | 289 | ubiquitous | marker | stromal cell of endometrium, tendon of biceps brachii, ascending aorta |
| ARIH1 | 292 | ubiquitous | marker | secondary oocyte, oocyte, cortical plate |
| MAT2A | 295 | ubiquitous | marker | body of pancreas, right lobe of thyroid gland, left lobe of thyroid gland |
| BLK | 145 | tissue_specific | marker | spleen, male germ line stem cell (sensu Vertebrata) in testis, lymph node |
| TGFBR1 | 269 | ubiquitous | marker | saphenous vein, tibia, visceral pleura |
| TGFBR2 | 289 | ubiquitous | marker | pericardium, tibia, parietal pleura |
| ACTA2 | 289 | ubiquitous | marker | cauda epididymis, blood vessel layer, saphenous vein |
| LCTL | 123 | broad | yes | sural nerve, tibial nerve, buccal mucosa cell |
| CDKN2A | 220 | ubiquitous | marker | parotid gland, cervix squamous epithelium, pituitary gland |
| CDKN2B | 219 | ubiquitous | marker | jejunal mucosa, colonic mucosa, lower esophagus mucosa |
| ROBO4 | 254 | broad | marker | lower lobe of lung, apex of heart, omental fat pad |
| COL16A1 | 282 | ubiquitous | marker | tibia, cartilage tissue, left ovary |
| ANKRD44 | 248 | ubiquitous | marker | monocyte, leukocyte, bone marrow cell |
| PEF1 | 285 | ubiquitous | marker | left lobe of thyroid gland, right lobe of thyroid gland, thyroid gland |
| RAD21-AS1 | 143 | | marker | buccal mucosa cell, male germ line stem cell (sensu Vertebrata) in testis, sperm |
| AARD | 116 | broad | marker | left testis, testis, right testis |
| CDKN2B-AS1 | 169 | ubiquitous | marker | mucosa of transverse colon, rectum, transverse colon |
| GATA4 | 85 | broad | marker | right atrium auricular region, heart left ventricle, duodenum |
| SMAD3 | 288 | ubiquitous | marker | tendon of biceps brachii, cartilage tissue, hindlimb stylopod muscle |
| NOTCH1 | 272 | ubiquitous | marker | ventricular zone, colonic epithelium, visceral pleura |
| ADGRB2 | 202 | ubiquitous | yes | right frontal lobe, cortical plate, prefrontal cortex |
| RBBP8 | 273 | ubiquitous | marker | choroid plexus epithelium, primordial germ cell in gonad, male germ line stem cell (sensu Vertebrata) in testis |
Protein interactions among cohort
Intra-cohort edges: 13.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|
| CDKN2A | 9,311 |
| NOTCH1 | 7,411 |
| SMAD3 | 6,440 |
| TGFBR2 | 5,777 |
| GATA4 | 4,994 |
| TGFBR1 | 4,828 |
| MAT2A | 3,924 |
| FBN1 | 3,640 |
| CDKN2B | 3,431 |
| RBBP8 | 3,235 |
Intra-cohort edges
| A | B | Sources |
|---|
| ANKRD44 | NOTCH1 | biogrid_interaction, intact |
| CDKN2A | CDKN2B | biogrid_interaction |
| COL16A1 | FBN1 | string_interaction |
| EFEMP2 | FBN1 | intact, string_interaction |
| FBN1 | TGFBR1 | string_interaction |
| FBN1 | TGFBR2 | string_interaction |
| NOTCH1 | SMAD3 | string_interaction |
| NOTCH1 | TGFBR1 | biogrid_interaction |
| SMAD3 | TGFBR1 | string_interaction |
| SMAD3 | TGFBR2 | string_interaction |
| SMAD6 | TGFBR1 | string_interaction |
| SMAD6 | TGFBR2 | string_interaction |
| TGFBR1 | TGFBR2 | string_interaction |
Structural data
PDB: 13 · AlphaFold-only: 9 · No structure: 2
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|
| MAT2A | P31153 | 59 |
| TGFBR1 | P36897 | 44 |
| NOTCH1 | P46531 | 29 |
| TGFBR2 | P37173 | 22 |
| SMAD3 | P84022 | 12 |
| FBN1 | P35555 | 11 |
| ARIH1 | Q9Y4X5 | 10 |
| CDKN2A | P42771 | 5 |
| RBBP8 | Q99708 | 4 |
| GATA4 | P43694 | 3 |
| EFEMP2 | O95967 | 1 |
| PEF1 | Q9UBV8 | 1 |
| ADGRB2 | O60241 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|
| ACTA2 | P62736 | 95.43 |
| LCTL | Q6UWM7 | 92.71 |
| ANKRD44 | Q8N8A2 | 90.57 |
| CDKN2B | P42772 | 90.12 |
| BLK | P51451 | 81.89 |
| AARD | Q4LEZ3 | 78.24 |
| SMAD6 | O43541 | 72.34 |
| ROBO4 | Q8WZ75 | 57.67 |
| COL16A1 | Q07092 | 49.60 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 196. Enrichment computed across 24 evidence-associated genes (16 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 16 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|
| Loss of Function of TGFBR1 in Cancer | 3 | 428.2× | 2e-06 | TGFBR1, TGFBR2, SMAD3 |
| Loss of Function of SMAD2/3 in Cancer | 3 | 356.9× | 2e-06 | TGFBR1, TGFBR2, SMAD3 |
| Signaling by TGF-beta Receptor Complex in Cancer | 3 | 356.9× | 2e-06 | TGFBR1, TGFBR2, SMAD3 |
| SMAD2/3 Phosphorylation Motif Mutants in Cancer | 3 | 356.9× | 2e-06 | TGFBR1, TGFBR2, SMAD3 |
| TGFBR1 KD Mutants in Cancer | 3 | 356.9× | 2e-06 | TGFBR1, TGFBR2, SMAD3 |
| TGF-beta receptor signaling activates SMADs | 4 | 81.6× | 4e-06 | FBN1, TGFBR1, TGFBR2, SMAD3 |
| Signaling by TGFB family members | 5 | 36.0× | 5e-06 | SMAD6, TGFBR1, TGFBR2, CDKN2B, SMAD3 |
| Signaling by TGF-beta Receptor Complex | 4 | 50.1× | 2e-05 | TGFBR1, TGFBR2, CDKN2B, SMAD3 |
| NOTCH4 Intracellular Domain Regulates Transcription | 3 | 107.1× | 6e-05 | ACTA2, SMAD3, NOTCH1 |
| Loss of Function of TGFBR2 in Cancer | 2 | 475.8× | 1e-04 | TGFBR1, TGFBR2 |
| TGFBR2 Kinase Domain Mutants in Cancer | 2 | 475.8× | 1e-04 | TGFBR1, TGFBR2 |
| Downregulation of TGF-beta receptor signaling | 3 | 76.5× | 1e-04 | TGFBR1, TGFBR2, SMAD3 |
| Signaling by TGFBR3 | 3 | 69.1× | 1e-04 | TGFBR1, TGFBR2, SMAD3 |
| TGFBR1 LBD Mutants in Cancer | 2 | 356.9× | 2e-04 | TGFBR1, TGFBR2 |
| TGFBR3 regulates TGF-beta signaling | 2 | 178.4× | 7e-04 | TGFBR1, TGFBR2 |
| Formation of definitive endoderm | 2 | 89.2× | 0.003 | GATA4, SMAD3 |
| TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) | 2 | 84.0× | 0.003 | TGFBR1, TGFBR2 |
| Deubiquitination | 3 | 23.3× | 0.003 | TGFBR1, TGFBR2, SMAD3 |
| Signaling by NOTCH4 | 2 | 62.1× | 0.005 | ACTA2, SMAD3 |
| RNA Polymerase II Transcription | 5 | 7.0× | 0.005 | SMAD6, BLK, CDKN2A, CDKN2B, SMAD3 |
| G1 Phase | 2 | 49.2× | 0.007 | CDKN2A, CDKN2B |
| Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer | 2 | 46.0× | 0.007 | CDKN2B, SMAD3 |
| Oncogene Induced Senescence | 2 | 42.0× | 0.009 | CDKN2A, CDKN2B |
| Molecules associated with elastic fibres | 2 | 38.6× | 0.009 | FBN1, EFEMP2 |
| SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription | 2 | 38.6× | 0.009 | CDKN2B, SMAD3 |
| Evasion of Oncogene Induced Senescence Due to p14ARF Defects | 1 | 713.8× | 0.010 | CDKN2A |
| Evasion of Oxidative Stress Induced Senescence Due to p14ARF Defects | 1 | 713.8× | 0.010 | CDKN2A |
| Gene expression (Transcription) | 5 | 5.6× | 0.010 | SMAD6, BLK, CDKN2A, CDKN2B, SMAD3 |
| Transcriptional regulation by RUNX3 | 2 | 34.0× | 0.010 | CDKN2A, SMAD3 |
| Cyclin D associated events in G1 | 2 | 29.1× | 0.014 | CDKN2A, CDKN2B |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 21 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|
| aortic valve morphogenesis | 4 | 82.3× | 7e-05 | SMAD6, TGFBR2, GATA4, NOTCH1 |
| cellular response to transforming growth factor beta stimulus | 4 | 52.6× | 2e-04 | FBN1, TGFBR1, ACTA2, SMAD3 |
| heart looping | 4 | 51.0× | 2e-04 | TGFBR2, GATA4, SMAD3, NOTCH1 |
| activin receptor signaling pathway | 3 | 126.7× | 2e-04 | TGFBR1, TGFBR2, SMAD3 |
| SMAD protein signal transduction | 3 | 104.7× | 3e-04 | SMAD6, TGFBR2, SMAD3 |
| endoderm development | 3 | 89.2× | 3e-04 | GATA4, SMAD3, NOTCH1 |
| negative regulation of ossification | 3 | 89.2× | 3e-04 | SMAD6, SMAD3, NOTCH1 |
| embryonic cranial skeleton morphogenesis | 3 | 83.0× | 4e-04 | TGFBR1, TGFBR2, SMAD3 |
| glomerular mesangial cell development | 2 | 401.2× | 4e-04 | ACTA2, NOTCH1 |
| positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation | 2 | 401.2× | 4e-04 | TGFBR1, TGFBR2 |
| transforming growth factor beta receptor signaling pathway | 4 | 30.3× | 4e-04 | TGFBR1, TGFBR2, CDKN2B, SMAD3 |
| ventricular septum morphogenesis | 3 | 61.7× | 6e-04 | TGFBR1, TGFBR2, NOTCH1 |
| atrioventricular node development | 2 | 267.5× | 8e-04 | GATA4, NOTCH1 |
| positive regulation of SMAD protein signal transduction | 3 | 54.7× | 8e-04 | TGFBR1, TGFBR2, SMAD3 |
| trophoblast cell migration | 2 | 229.3× | 0.001 | TGFBR1, SMAD3 |
| transdifferentiation | 2 | 200.6× | 0.001 | GATA4, SMAD3 |
| positive regulation of epithelial to mesenchymal transition | 3 | 45.4× | 0.001 | TGFBR1, TGFBR2, SMAD3 |
| epithelial to mesenchymal transition | 3 | 44.6× | 0.001 | TGFBR1, TGFBR2, NOTCH1 |
| cardiac ventricle morphogenesis | 2 | 178.3× | 0.001 | GATA4, NOTCH1 |
| coronary artery morphogenesis | 2 | 178.3× | 0.001 | TGFBR1, NOTCH1 |
| positive regulation of extracellular matrix assembly | 2 | 178.3× | 0.001 | TGFBR1, SMAD3 |
| negative regulation of osteoblast differentiation | 3 | 42.2× | 0.001 | SMAD6, SMAD3, NOTCH1 |
| embryonic foregut morphogenesis | 2 | 160.5× | 0.001 | GATA4, SMAD3 |
| response to cholesterol | 2 | 160.5× | 0.001 | TGFBR1, TGFBR2 |
| cardiac left ventricle morphogenesis | 2 | 145.9× | 0.002 | TGFBR2, NOTCH1 |
| somatic stem cell division | 2 | 145.9× | 0.002 | CDKN2A, NOTCH1 |
| regulation of stem cell proliferation | 2 | 133.8× | 0.002 | TGFBR2, NOTCH1 |
| wound healing | 3 | 32.5× | 0.002 | TGFBR1, GATA4, SMAD3 |
| negative regulation of cell population proliferation | 5 | 10.0× | 0.002 | SMAD6, CDKN2A, CDKN2B, SMAD3, NOTCH1 |
| atrioventricular valve morphogenesis | 2 | 114.6× | 0.002 | TGFBR2, NOTCH1 |
Therapeutics
Drugs indicated for this disease
No approved or late-stage (phase ≥3) drug is indicated for this disease; the following are in earlier-phase trials only.
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): Nicardipine, Sodium Chloride.
Drug target analysis
Approved (phase 4): 4 · Phase ≥3: 4 · Phased (≥1): 5 · Undrugged: 19
Druggability breadth: 10 of 24 evidence-associated genes (42%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|
| BLK | 62 | 4 |
| TGFBR1 | 28 | 4 |
| TGFBR2 | 22 | 4 |
| SMAD3 | 2 | 4 |
| NOTCH1 | 1 | 2 |
| FBN1 | 0 | 0 |
| SMAD6 | 0 | 0 |
| EFEMP2 | 0 | 0 |
| ARIH1 | 0 | 0 |
| MAT2A | 0 | 0 |
Drugs targeting cohort genes (top 30)
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 5.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|
| TGFBR1 | 541 | Binding:516, Functional:13, ADMET:12 |
| BLK | 483 | Binding:477, ADMET:4, Functional:2 |
| TGFBR2 | 188 | Binding:188 |
| MAT2A | 64 | Binding:64 |
| SMAD3 | 24 | Binding:18, Functional:6 |
| NOTCH1 | 23 | Binding:19, ADMET:4 |
| PEF1 | 8 | Binding:8 |
| GATA4 | 5 | Binding:5 |
| CDKN2A | 2 | Binding:2 |
| ANKRD44 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|
| ARIH1 | 2.3.2.27, 2.3.2.31 | RING-type E3 ubiquitin transferase, RBR-type E3 ubiquitin transferase |
| MAT2A | 2.5.1.6 | methionine adenosyltransferase |
| BLK | 2.7.10.2 | non-specific protein-tyrosine kinase |
| TGFBR1 | 2.7.10.2, 2.7.11.30 | non-specific protein-tyrosine kinase, receptor protein serine/threonine kinase |
| TGFBR2 | 2.7.10.2 | non-specific protein-tyrosine kinase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|
| BLK | 483 |
| TGFBR1 | 541 |
| TGFBR2 | 188 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 24; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|
| AFATINIB | 4 | BLK |
| FEDRATINIB | 4 | BLK, TGFBR2 |
| AXITINIB | 4 | BLK |
| SORAFENIB | 4 | BLK, TGFBR2 |
| NERATINIB | 4 | BLK |
| IBRUTINIB | 4 | BLK |
| ENTRECTINIB | 4 | BLK |
| BELUMOSUDIL | 4 | BLK |
| AFATINIB DIMALEATE | 4 | BLK |
| VANDETANIB | 4 | BLK |
| NILOTINIB | 4 | BLK |
| BOSUTINIB | 4 | BLK |
| BRIGATINIB | 4 | BLK |
| ACALABRUTINIB | 4 | BLK |
| ZANUBRUTINIB | 4 | BLK |
| TIRABRUTINIB | 4 | BLK |
| RITLECITINIB | 4 | BLK |
| PAZOPANIB | 4 | BLK, TGFBR2 |
| NINTEDANIB | 4 | BLK, TGFBR1 |
| SUNITINIB | 4 | BLK |
| DASATINIB | 4 | BLK, TGFBR1, TGFBR2 |
| ERLOTINIB | 4 | BLK |
| QUIZARTINIB | 4 | BLK |
| CRIZOTINIB | 4 | BLK, TGFBR1 |
| MIDOSTAURIN | 4 | BLK |
| GEFITINIB | 4 | BLK |
| IMATINIB | 4 | BLK |
| MOMELOTINIB | 4 | TGFBR1 |
| DABRAFENIB | 4 | TGFBR1, TGFBR2 |
| PONATINIB | 4 | TGFBR2 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|
| A | Approved (phase 4 drug) | 4 | BLK, TGFBR1, TGFBR2, SMAD3 |
| B | Phased (≥1) drug, not yet approved | 1 | NOTCH1 |
| C | Druggable family + PDB, no drug | 2 | MAT2A, ADGRB2 |
| D | Druggable family + AlphaFold only, no drug | 1 | ROBO4 |
| E | Difficult family or no structure, no drug | 16 | FBN1, SMAD6, EFEMP2, ARIH1, ACTA2, LCTL, CDKN2A, CDKN2B, COL16A1, ANKRD44 (+6 more) |
Undrugged target profiles
19 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|
| SMAD6 | 0 | TGFBR1 |
| FBN1 | 0 | — |
| EFEMP2 | 0 | — |
| ARIH1 | 0 | — |
| MAT2A | 64 | — |
| ACTA2 | 0 | — |
| LCTL | 0 | — |
| CDKN2A | 2 | — |
| CDKN2B | 0 | — |
| ROBO4 | 0 | — |
| COL16A1 | 0 | — |
| ANKRD44 | 1 | — |
| PEF1 | 8 | — |
| RAD21-AS1 | 0 | — |
| AARD | 0 | — |
| CDKN2B-AS1 | 0 | — |
| GATA4 | 5 | — |
| ADGRB2 | 0 | — |
| RBBP8 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 57.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|
| Not specified | 51 |
| PHASE4 | 2 |
| PHASE1 | 2 |
| PHASE2/PHASE3 | 1 |
| PHASE1/PHASE2 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|
| NCT00339053 | PHASE4 | UNKNOWN | Immunonutrition and Thoracoabdominal Aorta Aneurysm Repair |
| NCT02291718 | PHASE4 | COMPLETED | Thoracoabdominal Arortic CTA Study |
| NCT00604799 | PHASE2/PHASE3 | COMPLETED | VALOR: The Talent Thoracic Stent Graft System Clinical Study |
| NCT07483177 | PHASE1/PHASE2 | NOT_YET_RECRUITING | HEART: Pilot Randomized Controlled Trial |
| NCT01033214 | PHASE1 | UNKNOWN | ENTRUST - TAArget® Thoracic Stent Graft Clinical Trial |
| NCT03998631 | PHASE1 | UNKNOWN | Comparison of Carbon Dioxide and Saline Flush to Saline Flush in TEVAR and TAVI Procedures to Reduce Cerebral Ischemia |
| NCT00583817 | Not specified | ENROLLING_BY_INVITATION | Endovascular Treatment of Thoracic Aortic Disease |
| NCT03142074 | Not specified | RECRUITING | Biomechanical and Microstructural Properties of Ascending Aortic Aneurysms |
| NCT03440697 | Not specified | ACTIVE_NOT_RECRUITING | Pathogenetic Basis of Aortopathy and Aortic Valve Disease |
| NCT04197648 | Not specified | RECRUITING | Effects of Exercise on Thoracic Aneurysms |
| NCT04246463 | Not specified | RECRUITING | Terumo Aortic Global Endovascular Registry |
| NCT04523909 | Not specified | RECRUITING | Trajectory of Neuroinflammatory Markers in Cerebrospinal Fluid Prior to and After Thoracic Aortic Surgery |
| NCT04747626 | Not specified | RECRUITING | B-SAFER: Branched Stented Anastomosis Frozen Elephant Trunk Repair |
| NCT05143138 | Not specified | ACTIVE_NOT_RECRUITING | Real-World Data Collection of the GORE® VIABAHN® VBX Balloon Expandable Endoprosthesis When Used as a Bridging Stent With Branched and Fenestrated Endografts in the Treatment of Aortic Aneurysms Involving the Renal-Mesenteric Arteries |
| NCT05155956 | Not specified | ACTIVE_NOT_RECRUITING | Cerebral Hemodynamics and Microemboli During Placement of Relay®Branch Thoracic Stent-Graft System |
| NCT05309707 | Not specified | RECRUITING | ENDOBARC-S Study: Endovascular Branched Stent-grafts for Aortic ARCh Pathologies in Spain |
| NCT05395598 | Not specified | RECRUITING | Incidence of Major Complication in Case of Thoracic Aortic Aneurysm |
| NCT05639400 | Not specified | ACTIVE_NOT_RECRUITING | Thoraflex Hybrid and Relay Extension Post-Approval Study |
| NCT05777460 | Not specified | RECRUITING | Mid- and Long-term Outcomes of Custom-made Aortic Devices |
| NCT06028789 | Not specified | RECRUITING | AOrtic Surgery: Systemic Inflammatory Response Versus Sepsis |
| NCT06094127 | Not specified | ACTIVE_NOT_RECRUITING | Zenith Thoracic Alpha (ZTA) Post-Market Data Collection |
| NCT06336213 | Not specified | RECRUITING | Antibacterial Tactics Based on Presepsin Level in Thoracic Aorta Surgery Patients |
| NCT06353607 | Not specified | RECRUITING | Genetic Architecture of Acute Aortic Syndromes and Aortic Aneurysm. |
| NCT06377033 | Not specified | RECRUITING | Using the EHR to Advance Genomic Medicine Across a Diverse Health System |
| NCT06507865 | Not specified | RECRUITING | Post Market Registry for GORE® TAG® Thoracic Branch Endoprosthesis |
| NCT06639243 | Not specified | ACTIVE_NOT_RECRUITING | Quick Yielding Modified Short-Distance Fenestration Technique for the Treatment of Complex Aortic Arch Diseases: a Multicenter Single-Arm Objective Performance Criteria Trial(QYM-Tech Study) |
| NCT06786351 | Not specified | NOT_YET_RECRUITING | Impact of Right Atrial Occlusion on TEVAR Outcomes |
| NCT06786754 | Not specified | ENROLLING_BY_INVITATION | Fibroblasts and Thoracic Aortic Aneurysms: in Vitro Characterization in With Marfan Syndrome and Genetic Aortic Diseases |
| NCT06854588 | Not specified | NOT_YET_RECRUITING | POCUS Screening for TAA in Hypertensive Patients in the ED |
| NCT06882967 | Not specified | RECRUITING | Active Thoracic Compromised Distal LANding in TEvar |
| NCT07391293 | Not specified | RECRUITING | Genetic Aortic Diseases and Cardiovascular Complications. An Observational Survey of Risk Factors. |
| NCT07564375 | Not specified | NOT_YET_RECRUITING | MBA Early Feasibility Study |
| NCT00111176 | Not specified | COMPLETED | STARZ-TX2 Clinical Study: Study of Thoracic Aortic Aneurysm Repair With the Zenith TX2 Endovascular Graft |
| NCT00413231 | Not specified | COMPLETED | Valor II: The Valiant Thoracic Stent Graft System Clinical Study |
| NCT00435942 | Not specified | COMPLETED | Phase II Study of the Safety and Efficacy of the Relay Thoracic Stent-Graft |
| NCT00549315 | Not specified | UNKNOWN | Clinical Study of Thoracic Aortic Aneurysm Exclusion |
| NCT00597870 | Not specified | COMPLETED | Physician-Sponsored IDE for the Talent Endoluminal Stent Graft System for the Treatment of Thoracic Lesions |
| NCT00805948 | Not specified | TERMINATED | Post-Approval Clinical Study of the Talent Thoracic Stent Graft to Treat Thoracic Aortic Aneurysms (THRIVE) |
| NCT01082172 | Not specified | COMPLETED | South American Thoracic Stent-Graft Study |
| NCT01327742 | Not specified | APPROVED_FOR_MARKETING | Phase II Clinical Study of the Safety and Efficacy of the Relay Thoracic Stent-Graft |
Drugs tested across these trials (top 30)
- Cohort genes: FBN1, SMAD6, EFEMP2, ARIH1, MAT2A, BLK, TGFBR1, TGFBR2, ACTA2, LCTL, CDKN2A, CDKN2B, ROBO4, COL16A1, ANKRD44, PEF1, RAD21-AS1, AARD, CDKN2B-AS1, GATA4, SMAD3, NOTCH1, ADGRB2, RBBP8
- Drugs: Iopamidol, Spironolactone, Carbon Dioxide