Thrombophilia due to thrombin defect
diseaseOn this page
Also known as factor II-related thrombophiliahyperprothrombinemiaprothrombin 20210G>A thrombophiliaprothrombin G20210A thrombophiliaprothrombin thrombophiliaprothrombin-related thrombophiliaTHPH1thrombophilia 1 due to thrombin defectVenous thromboembolismvenous thromboembolism, susceptibility tovenous thrombosis, protection against
Summary
Thrombophilia due to thrombin defect (MONDO:0008559) is a disease caused by F2 (GenCC Definitive), with 5 cohort genes and 549 clinical trials. Top therapeutic interventions include enoxaparin sodium, fondaparinux, and dabigatran etexilate.
At a glance
- Causal gene: F2 (GenCC Definitive)
- Cohort genes: 5
- ClinVar variants: 303
- Clinical trials: 549
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | thrombophilia due to thrombin defect |
| Mondo ID | MONDO:0008559 |
| OMIM | 188050 |
| DOID | DOID:0080701, DOID:0111907 |
| SNOMED CT | 111293003 |
| UMLS | C3160733 |
| MedGen | 463623 |
| GARD | 0010815 |
| Is cancer (heuristic) | no |
Also known as: factor II-related thrombophilia · hyperprothrombinemia · prothrombin 20210G>A thrombophilia · prothrombin G20210A thrombophilia · prothrombin thrombophilia · prothrombin-related thrombophilia · THPH1 · thrombophilia 1 due to thrombin defect · thrombophilia due to thrombin defect · Venous thromboembolism · venous thromboembolism, susceptibility to · venous thrombosis, protection against
Data availability: 303 ClinVar variants · 4 GenCC gene-disease records.
Disease family
Classification path: disease › human disease › disease by body system or component › hematologic disorder › blood coagulation disease › thrombophilia › inherited thrombophilia › thrombophilia due to thrombin defect
Related subtypes (11): factor 5 excess with spontaneous thrombosis, thrombophilia due to activated protein C resistance, thrombophilia, X-linked, due to factor 9 defect, thrombophilia, familial, due to decreased release of tissue plasminogen activator, heparin cofactor 2 deficiency, hereditary thrombophilia due to congenital histidine-rich (poly-L) glycoprotein deficiency, hereditary antithrombin deficiency, thrombomodulin-related bleeding disorder, hereditary thrombophilia due to congenital protein S deficiency, hereditary thrombophilia due to congenital protein C deficiency, thrombophilia, X-linked, due to factor 8 defect
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
303 retrieved; paginated sample, class counts are floors:
112 uncertain significance, 99 conflicting classifications of pathogenicity, 49 benign/likely benign, 13 pathogenic/likely pathogenic, 10 benign, 6 pathogenic, 5 likely pathogenic, 5 likely benign, 1 conflicting classifications of pathogenicity; risk factor, 1 pathogenic/likely pathogenic/pathogenic, low penetrance/established risk allele; risk factor, 1 drug response, 1 benign/likely benign; other
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 29694 | NM_000129.4(F13A1):c.603_606del (p.Arg202fs) | F13A1 | Pathogenic | criteria provided, single submitter |
| 3594056 | NM_000129.4(F13A1):c.523C>T (p.Arg175Ter) | F13A1 | Pathogenic | criteria provided, single submitter |
| 13303 | NM_000506.3(F2):c.940C>T (p.Arg314Cys) | F2 | Pathogenic | criteria provided, single submitter |
| 13310 | NM_000506.5(F2):c.*97G>A | F2 | Pathogenic/Likely pathogenic/Pathogenic, low penetrance/Established risk allele; risk factor | criteria provided, multiple submitters, no conflicts |
| 2706763 | NM_000506.5(F2):c.1499G>A (p.Arg500Gln) | F2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 31922 | NM_000506.5(F2):c.1787G>T (p.Arg596Leu) | F2 | Pathogenic | no assertion criteria provided |
| 692073 | NM_000506.5(F2):c.1787G>A (p.Arg596Gln) | F2 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 1024006 | NM_005957.5(MTHFR):c.1228_1242del (p.Ser410_Lys414del) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 187869 | NM_005957.5(MTHFR):c.202C>G (p.Arg68Gly) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 187876 | NM_005957.5(MTHFR):c.548G>A (p.Arg183Gln) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 187893 | NM_005957.5(MTHFR):c.1320G>A (p.Ser440=) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 187897 | NM_005957.5(MTHFR):c.1632+2T>G | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3519 | NM_005957.5(MTHFR):c.470G>A (p.Arg157Gln) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3529 | NM_005957.5(MTHFR):c.968T>C (p.Leu323Pro) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 570071 | NM_005957.5(MTHFR):c.155G>A (p.Arg52Gln) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 654511 | NM_005957.5(MTHFR):c.1130G>A (p.Arg377His) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 660609 | NM_005957.5(MTHFR):c.1699C>T (p.Arg567Ter) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 800827 | NM_005957.5(MTHFR):c.680C>T (p.Thr227Met) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 848996 | NM_005957.5(MTHFR):c.1541_1542del (p.Glu514fs) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 996033 | NM_005957.5(MTHFR):c.459C>G (p.Ile153Met) | MTHFR | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3599612 | NM_000506.5(F2):c.317-1G>A | F2 | Likely pathogenic | criteria provided, single submitter |
| 1098292 | NM_005957.5(MTHFR):c.1316T>C (p.Leu439Pro) | MTHFR | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 222892 | NM_005957.5(MTHFR):c.236+1G>A | MTHFR | Likely pathogenic | criteria provided, single submitter |
| 3382551 | NM_005957.5(MTHFR):c.1429C>T (p.Gln477Ter) | MTHFR | Likely pathogenic | criteria provided, single submitter |
| 3576271 | NM_005957.5(MTHFR):c.727T>G (p.Cys243Gly) | MTHFR | Likely pathogenic | criteria provided, single submitter |
| 3520 | NM_005957.5(MTHFR):c.665C>T (p.Ala222Val) | MTHFR | drug response | reviewed by expert panel |
| 911739 | NM_000129.4(F13A1):c.1184C>T (p.Ala395Val) | F13A1 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 13302 | NM_000506.3(F2):c.598G>A (p.Glu200Lys) | F2 | Conflicting classifications of pathogenicity; risk factor | criteria provided, conflicting classifications |
| 1676733 | NM_000506.5(F2):c.1298+19G>A | F2 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 256313 | NM_000506.5(F2):c.1602G>A (p.Pro534=) | F2 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 8 · Orphanet: 13 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| F2 | Definitive | Autosomal dominant | thrombophilia due to thrombin defect | 8 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| F2 | Orphanet:325 | Congenital factor II deficiency |
| F2 | Orphanet:329217 | Cerebral sinovenous thrombosis |
| F13A1 | Orphanet:331 | Congenital factor XIII deficiency |
| F5 | Orphanet:131 | Budd-Chiari syndrome |
| F5 | Orphanet:326 | Congenital factor V deficiency |
| F5 | Orphanet:329217 | Cerebral sinovenous thrombosis |
| F5 | Orphanet:391320 | East Texas bleeding disorder |
| F5 | Orphanet:599579 | Factor V Amsterdam bleeding disorder |
| F5 | Orphanet:600194 | Factor V Atlanta bleeding disorder |
| HABP2 | Orphanet:319487 | Familial papillary or follicular thyroid carcinoma |
| MTHFR | Orphanet:395 | Homocystinuria due to methylene tetrahydrofolate reductase deficiency |
| MTHFR | Orphanet:563609 | Isolated anencephaly |
| MTHFR | Orphanet:563612 | Isolated exencephaly |
Cohort genes → proteins
5 cohort genes, 5 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 5 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| F2 | HGNC:3535 | ENSG00000180210 | P00734 | Prothrombin | gencc,clinvar |
| F13A1 | HGNC:3531 | ENSG00000124491 | P00488 | Coagulation factor XIII A chain | clinvar |
| F5 | HGNC:3542 | ENSG00000198734 | P12259 | Coagulation factor V | clinvar |
| HABP2 | HGNC:4798 | ENSG00000148702 | Q14520 | Factor VII-activating protease | clinvar |
| MTHFR | HGNC:7436 | ENSG00000177000 | P42898 | Methylenetetrahydrofolate reductase (NADPH) | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| F2 | Prothrombin | Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. |
| F13A1 | Coagulation factor XIII A chain | Factor XIII is activated by thrombin and calcium ion to a transglutaminase that catalyzes the formation of gamma-glutamyl-epsilon-lysine cross-links between fibrin chains, thus stabilizing the fibrin clot. |
| F5 | Coagulation factor V | Central regulator of hemostasis. |
| HABP2 | Factor VII-activating protease | Cleaves the alpha-chain at multiple sites and the beta-chain between ‘Lys-53’ and ‘Lys-54’ but not the gamma-chain of fibrinogen and therefore does not initiate the formation of the fibrin clot and does not cause the fibrinolysis directly. |
| MTHFR | Methylenetetrahydrofolate reductase (NADPH) | Catalyzes the conversion of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate, a cosubstrate for homocysteine remethylation to methionine. |
Protein-family classification
Druggable: 4 · Difficult: 0 · Unknown: 1 · Druggable fraction: 0.8
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Protease | 2 | 14.7× | 0.028 |
| Antibody/Immunoglobulin | 1 | 5.8× | 0.320 |
| Enzyme (other) | 1 | 2.4× | 0.471 |
| Other/Unknown | 1 | 0.4× | 0.983 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| F2 | Protease | yes | 3.4.21.5 | Kringle, GLA_domain, Trypsin_dom |
| F13A1 | Antibody/Immunoglobulin | yes | 2.3.2.13 | Transglutaminase_N, Transglutaminase-like, Transglutaminase_C |
| F5 | Other/Unknown | no | FA58C, Cupredoxin, Galactose-bd-like_sf | |
| HABP2 | Protease | yes | 3.4.21.B1 | Kringle, EGF, Trypsin_dom |
| MTHFR | Enzyme (other) | yes | 1.5.1.20 | Mehydrof_redctse-like, Fadh2_euk, FAD-linked_oxidoreductase-like |
Expression context
Cohort genes with no expression data: 0.
5 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 5 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| liver | 3 |
| right lobe of liver | 3 |
| male germ line stem cell (sensu Vertebrata) in testis | 1 |
| monocyte | 1 |
| mononuclear cell | 1 |
| pericardium | 1 |
| choroid plexus epithelium | 1 |
| pancreatic ductal cell | 1 |
| apex of heart | 1 |
| corpus epididymis | 1 |
| sural nerve | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| F2 | 117 | tissue_specific | marker | right lobe of liver, liver, male germ line stem cell (sensu Vertebrata) in testis |
| F13A1 | 261 | broad | marker | monocyte, mononuclear cell, pericardium |
| F5 | 206 | broad | marker | right lobe of liver, liver, choroid plexus epithelium |
| HABP2 | 115 | tissue_specific | marker | right lobe of liver, pancreatic ductal cell, liver |
| MTHFR | 254 | ubiquitous | marker | corpus epididymis, sural nerve, apex of heart |
Protein interactions among cohort
Intra-cohort edges: 4.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| HABP2 | 4,008 |
| MTHFR | 3,492 |
| F2 | 2,709 |
| F13A1 | 2,346 |
| F5 | 1,754 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| F13A1 | F2 | string_interaction |
| F2 | F5 | biogrid_interaction, string_interaction |
| F2 | MTHFR | string_interaction |
| F5 | MTHFR | string_interaction |
Structural data
PDB: 4 · AlphaFold-only: 1 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| F2 | P00734 | 475 |
| F5 | P12259 | 18 |
| F13A1 | P00488 | 15 |
| MTHFR | P42898 | 4 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| HABP2 | Q14520 | 77.58 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 49. Enrichment computed across 5 evidence-associated genes (4 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 4 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Fibrin formation | 2 | 439.2× | 3e-04 | F2, F13A1 |
| Amplification and propagation of coagulation cascade | 2 | 317.2× | 3e-04 | F2, F5 |
| Initiation of coagulation cascade | 2 | 237.9× | 4e-04 | F2, F5 |
| Regulation of clotting cascade | 2 | 116.5× | 0.001 | F2, F5 |
| Gamma-carboxylation, transport, and amino-terminal cleavage of proteins | 1 | 2855.0× | 0.003 | F2 |
| Defective factor VIII causes hemophilia A | 1 | 2855.0× | 0.003 | F2 |
| R-HSA-9651496 | 1 | 951.7× | 0.004 | F2 |
| Defective F8 cleavage by thrombin | 1 | 951.7× | 0.004 | F2 |
| Defective cleavage of FV variant at a.a.534 | 1 | 951.7× | 0.004 | F5 |
| Defective cleavage of FV variant at R334 | 1 | 951.7× | 0.004 | F5 |
| Platelet degranulation | 2 | 43.9× | 0.004 | F13A1, F5 |
| Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) | 2 | 43.3× | 0.004 | F2, F5 |
| R-HSA-140875 | 1 | 713.8× | 0.005 | F2 |
| Defective factor XII causes hereditary angioedema | 1 | 713.8× | 0.005 | F2 |
| Diseases of hemostasis | 1 | 713.8× | 0.005 | F2 |
| R-HSA-140837 | 1 | 356.9× | 0.009 | F2 |
| Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus | 1 | 317.2× | 0.009 | F2 |
| Gamma-carboxylation of protein precursors | 1 | 285.5× | 0.009 | F2 |
| Removal of aminoterminal propeptides from gamma-carboxylated proteins | 1 | 285.5× | 0.009 | F2 |
| R-HSA-140877 | 1 | 237.9× | 0.010 | F2 |
| Complement cascade | 1 | 158.6× | 0.014 | F2 |
| Metabolism of folate and pterines | 1 | 158.6× | 0.014 | MTHFR |
| Platelet Aggregation (Plug Formation) | 1 | 109.8× | 0.019 | F2 |
| Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation | 1 | 105.7× | 0.019 | F2 |
| Thrombin signalling through proteinase activated receptors (PARs) | 1 | 89.2× | 0.022 | F2 |
| Cargo concentration in the ER | 1 | 84.0× | 0.022 | F5 |
| Regulation of Complement cascade | 1 | 58.3× | 0.031 | F2 |
| Metabolism of water-soluble vitamins and cofactors | 1 | 45.3× | 0.038 | MTHFR |
| COPII-mediated vesicle transport | 1 | 40.8× | 0.041 | F5 |
| Metabolism of vitamins and cofactors | 1 | 29.1× | 0.055 | MTHFR |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| blood coagulation, fibrin clot formation | 2 | 674.1× | 8e-05 | F2, F13A1 |
| blood coagulation | 3 | 104.2× | 8e-05 | F2, F13A1, F5 |
| response to vitamin B2 | 1 | 1685.2× | 0.008 | MTHFR |
| response to vitamin K | 1 | 1123.5× | 0.008 | F5 |
| S-adenosylmethionine metabolic process | 1 | 1123.5× | 0.008 | MTHFR |
| obsolete methionine biosynthetic process | 1 | 674.1× | 0.008 | MTHFR |
| neutrophil-mediated killing of gram-negative bacterium | 1 | 674.1× | 0.008 | F2 |
| L-methionine metabolic process | 1 | 561.7× | 0.008 | MTHFR |
| response to folic acid | 1 | 481.5× | 0.008 | MTHFR |
| thrombin-activated receptor signaling pathway | 1 | 481.5× | 0.008 | F2 |
| positive regulation of phospholipase C-activating G protein-coupled receptor signaling pathway | 1 | 481.5× | 0.008 | F2 |
| obsolete cytolysis by host of symbiont cells | 1 | 421.3× | 0.008 | F2 |
| negative regulation of platelet activation | 1 | 374.5× | 0.008 | F2 |
| regulation of blood coagulation | 1 | 374.5× | 0.008 | F2 |
| homocysteine metabolic process | 1 | 374.5× | 0.008 | MTHFR |
| ligand-gated ion channel signaling pathway | 1 | 374.5× | 0.008 | F2 |
| tetrahydrofolate interconversion | 1 | 337.0× | 0.009 | MTHFR |
| negative regulation of astrocyte differentiation | 1 | 306.4× | 0.009 | F2 |
| peptide cross-linking | 1 | 280.9× | 0.009 | F13A1 |
| negative regulation of fibrinolysis | 1 | 280.9× | 0.009 | F2 |
| heterochromatin organization | 1 | 259.3× | 0.009 | MTHFR |
| negative regulation of blood coagulation | 1 | 240.7× | 0.009 | F2 |
| positive regulation of blood coagulation | 1 | 224.7× | 0.010 | F2 |
| response to amino acid | 1 | 198.3× | 0.010 | MTHFR |
| fibrinolysis | 1 | 168.5× | 0.012 | F2 |
| negative regulation of proteolysis | 1 | 134.8× | 0.014 | F2 |
| positive regulation of collagen biosynthetic process | 1 | 129.6× | 0.014 | F2 |
| proteolysis | 2 | 13.7× | 0.014 | F2, HABP2 |
| blood circulation | 1 | 102.1× | 0.016 | F5 |
| response to interleukin-1 | 1 | 102.1× | 0.016 | MTHFR |
Therapeutics
Drug target analysis
Approved (phase 4): 2 · Phase ≥3: 3 · Phased (≥1): 3 · Undrugged: 2
Druggability breadth: 4 of 5 evidence-associated genes (80%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| F2 | INDIGOTINDISULFONATE |
| F5 | EDOXABAN |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| F2 | 48 | 4 |
| F5 | 2 | 4 |
| F13A1 | 1 | 3 |
| HABP2 | 0 | 0 |
| MTHFR | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| INDIGOTINDISULFONATE | 4 | F2 |
| ARGATROBAN | 4 | F2 |
| BENZOYL PEROXIDE | 4 | F2 |
| SUCCIMER | 4 | F2 |
| EDOXABAN | 4 | F2, F5 |
| METHYLPREDNISOLONE ACETATE | 4 | F2 |
| LIOTHYRONINE | 4 | F2 |
| CAPTOPRIL | 4 | F2 |
| RIVAROXABAN | 4 | F2 |
| TELOTRISTAT | 4 | F2 |
| LUSUTROMBOPAG | 4 | F2 |
| APIXABAN | 4 | F2 |
| HEXAMIDINE | 4 | F2 |
| MELAGATRAN | 4 | F2 |
| CIANIDANOL | 4 | F2 |
| BORTEZOMIB | 4 | F2 |
| DEQUALINIUM | 4 | F2 |
| SULFAGUANIDINE | 4 | F2 |
| BETRIXABAN | 4 | F2 |
| XIMELAGATRAN | 4 | F2 |
| BIVALIRUDIN | 4 | F2 |
| DABIGATRAN ETEXILATE | 4 | F2 |
| PENTAMIDINE | 4 | F2 |
| GENTIAN VIOLET | 4 | F2 |
| NAFAMOSTAT | 3 | F2 |
| MILVEXIAN | 3 | F2 |
| DABIGATRAN | 3 | F2 |
| QUERCETIN | 3 | F2 |
| CAMOSTAT | 3 | F2 |
| CAMOSTAT MESILATE | 3 | F2 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 4.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| F2 | 1,269 | Binding:1216, Functional:38, ADMET:13, Toxicity:2 |
| F13A1 | 42 | Binding:42 |
| F5 | 10 | Binding:10 |
| HABP2 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| F2 | 3.4.21.5 | thrombin |
| F13A1 | 2.3.2.13 | protein-glutamine gamma-glutamyltransferase |
| HABP2 | 3.4.21.B1 | |
| MTHFR | 1.5.1.20, 1.5.1.53 | methylenetetrahydrofolate reductase [NAD(P)H], methylenetetrahydrofolate reductase (NADPH) |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| F2 | 1,269 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 5; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
23 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| INDIGOTINDISULFONATE | 4 | F2 |
| BENZOYL PEROXIDE | 4 | F2 |
| SUCCIMER | 4 | F2 |
| METHYLPREDNISOLONE ACETATE | 4 | F2 |
| LIOTHYRONINE | 4 | F2 |
| CAPTOPRIL | 4 | F2 |
| TELOTRISTAT | 4 | F2 |
| LUSUTROMBOPAG | 4 | F2 |
| HEXAMIDINE | 4 | F2 |
| MELAGATRAN | 4 | F2 |
| CIANIDANOL | 4 | F2 |
| BORTEZOMIB | 4 | F2 |
| DEQUALINIUM | 4 | F2 |
| SULFAGUANIDINE | 4 | F2 |
| XIMELAGATRAN | 4 | F2 |
| BIVALIRUDIN | 4 | F2 |
| PENTAMIDINE | 4 | F2 |
| GENTIAN VIOLET | 4 | F2 |
| NAFAMOSTAT | 3 | F2 |
| MILVEXIAN | 3 | F2 |
| QUERCETIN | 3 | F2 |
| CAMOSTAT | 3 | F2 |
| CAMOSTAT MESILATE | 3 | F2 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 2 | F2, F5 |
| B | Phased (≥1) drug, not yet approved | 1 | F13A1 |
| C | Druggable family + PDB, no drug | 1 | MTHFR |
| D | Druggable family + AlphaFold only, no drug | 1 | HABP2 |
| E | Difficult family or no structure, no drug | 0 |
Undrugged target profiles
2 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| MTHFR | 0 | F2 |
| HABP2 | 1 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 549.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 315 |
| PHASE3 | 93 |
| PHASE4 | 54 |
| PHASE2 | 54 |
| PHASE2/PHASE3 | 12 |
| PHASE1 | 11 |
| EARLY_PHASE1 | 8 |
| PHASE1/PHASE2 | 2 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03244020 | PHASE4 | ENROLLING_BY_INVITATION | LMWH vs Aspirin for VTE Prophylaxis in Orthopaedic Oncology |
| NCT04263038 | PHASE4 | RECRUITING | Clinical Surveillance vs. Anticoagulation for Low-risk Patients With Isolated Subsegmental Pulmonary Embolism |
| NCT05735639 | PHASE4 | RECRUITING | THRomboprophylaxis in Individuals Undergoing Superficial endoVEnous Treatment (THRIVE) |
| NCT06452342 | PHASE4 | NOT_YET_RECRUITING | TRanEXamic Acid to Decrease Heavy Menstrual Bleeding in Individuals Anticoagulated for Venous Thromboembolism Pilot Study |
| NCT06523959 | PHASE4 | RECRUITING | Avoiding Risks of Thrombosis and Bleeding in Surgery (ARTS) Trial |
| NCT06581965 | PHASE4 | RECRUITING | inDividual, Targeted thrombosIS Prophylaxis Versus the Standard ‘One Size Fits All’ Approach in Patients Undergoing Total hIp or Total kNee replaCemenT |
| NCT06603870 | PHASE4 | RECRUITING | Secondary Prevention of VTE in Patients With Cancer and Catheter-Related Upper Extremity Deep Vein Thrombosis |
| NCT06845423 | PHASE4 | RECRUITING | Prevention of Postpartum Venous Thromboembolism in Women at Intermediate Risk |
| NCT06958588 | PHASE4 | RECRUITING | Pulsed Electromagnetic Field Therapy or Pneumatic Compression VTE Prophylaxis |
| NCT07189897 | PHASE4 | RECRUITING | Apixaban or Enoxaparin After Head and Neck Cancer Surgery |
| NCT07303816 | PHASE4 | NOT_YET_RECRUITING | Statins to Prevent Cancer Associated Blood Clots |
| NCT00077753 | PHASE4 | COMPLETED | EXCLAIM:Extended Prophylaxis for Venous ThromboEmbolism (VTE) in Acutely Ill Medical Patients With Prolonged Immobilization |
| NCT00196118 | PHASE4 | COMPLETED | Study of IVC Filter Retrieval With the Günther Tulip Vena Cava Filter |
| NCT00437697 | PHASE4 | TERMINATED | Thromboprophylaxis in Critically Ill Patients |
| NCT00445328 | PHASE4 | TERMINATED | Dalteparin vs Unfractionated Heparin For The Prevention Of Venous Thromboembolism (VTE) In Hospitalized Acutely Ill Medical Patients |
| NCT00689520 | PHASE4 | COMPLETED | Long-Term Low-Molecular-Weight Heparin Versus Oral Anticoagulants in Deep Venous Thrombosis |
| NCT00851864 | PHASE4 | COMPLETED | Safety and Efficacy of Therapeutic Anticoagulation With Tinzaparin During Pregnancy Via Weight-based Dosing |
| NCT00966277 | PHASE4 | COMPLETED | Dalteparin for Primary Venous Thromboembolism (VTE) Prophylaxis in Pancreatic Cancer Patients |
| NCT00967304 | PHASE4 | COMPLETED | Clinical Decision Rule Validation Study to Predict Low Recurrent Risk in Patients With Unprovoked Venous Thromboembolism |
| NCT01119261 | PHASE4 | COMPLETED | EUropean Pharmacogenetics of AntiCoagulant Therapy - Acenocoumarol |
| NCT01119274 | PHASE4 | COMPLETED | EUropean Pharmacogenetics of AntiCoagulant Therapy - Phenprocoumon |
| NCT01119300 | PHASE4 | COMPLETED | EUropean Pharmacogenetics of AntiCoagulant Therapy - Warfarin |
| NCT01210755 | PHASE4 | COMPLETED | Study in Healthy Volunteers of the Reversion by Haemostatic Drugs of the Anticoagulant Effect of New Anti-thrombotics |
| NCT01304108 | PHASE4 | COMPLETED | Improving Venous Thromboembolism Prophylaxis |
| NCT01467583 | PHASE4 | COMPLETED | Fondaparinux in Critically Ill Patients With Renal Failure |
| NCT01916707 | PHASE4 | UNKNOWN | Weight Based Enoxaparin in Trauma Patients |
| NCT02095509 | PHASE4 | COMPLETED | Pharmacokinetics of Enoxaparin in Intensive Care Patients |
| NCT02396732 | PHASE4 | TERMINATED | Aspirin and Enoxaparin for VTE in Trauma |
| NCT02412982 | PHASE4 | COMPLETED | Evaluation of Venous Thromboembolism Prevention in High-Risk Trauma Patients |
| NCT02464969 | PHASE4 | COMPLETED | Apixaban for the Acute Treatment of Venous Thromboembolism in Children |
| NCT02474212 | PHASE4 | COMPLETED | : Pharmacokinetics of Enoxaparin After Coronary Artery Bypass Graft Surgery |
| NCT02559856 | PHASE4 | COMPLETED | Comparison of Bleeding Risk Between Rivaroxaban and Apixaban: The Pilot Study |
| NCT02856295 | PHASE4 | COMPLETED | anti10a Levels in Women Treated With LMWH in the Postpartum Period |
| NCT02945280 | PHASE4 | TERMINATED | Apixaban for Routine Management of Upper Extremity Deep Venous Thrombosis |
| NCT02958969 | PHASE4 | COMPLETED | Apixaban for Primary Prevention of Venous Thromboembolism in Patients With Multiple Myeloma |
| NCT03006562 | PHASE4 | TERMINATED | PREvention of VENous ThromboEmbolism Following Radical Prostatectomy |
| NCT03158792 | PHASE4 | COMPLETED | Enoxaparin 20mg Versus 30mg Subcutaneously Once Daily in Elderly Patients With Impaired Renal Function |
| NCT03196349 | PHASE4 | TERMINATED | Comparison of Oral Anticoagulants for Extended VEnous Thromboembolism |
| NCT03266783 | PHASE4 | COMPLETED | Comparison of Bleeding Risk Between Rivaroxaban and Apixaban for the Treatment of Acute Venous Thromboembolism |
| NCT03426982 | PHASE4 | UNKNOWN | Comparision Between Activated Partial Thromboplastin Time Versus Anti-Xa Activity in Heparin Monitoring |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| ENOXAPARIN SODIUM | 4 | 62 |
| FONDAPARINUX | 4 | 29 |
| DABIGATRAN ETEXILATE | 4 | 21 |
| APIXABAN | 4 | 19 |
| DALTEPARIN SODIUM | 4 | 17 |
| RIVAROXABAN | 4 | 16 |
| EDOXABAN | 4 | 14 |
| WARFARIN | 4 | 6 |
| NADROPARIN CALCIUM | 4 | 4 |
| HEPARIN | 4 | 3 |
| TINZAPARIN SODIUM | 4 | 3 |
| ACENOCOUMAROL | 4 | 2 |
| ARGATROBAN | 4 | 1 |
| BETRIXABAN | 4 | 1 |
| CLARITHROMYCIN | 4 | 1 |
| PHENPROCOUMON | 4 | 1 |
| DABIGATRAN | 3 | 8 |
| SEMULOPARIN SODIUM | 3 | 8 |
| DAREXABAN | 3 | 7 |
| TINZAPARIN | 3 | 5 |
| ABELACIMAB | 3 | 2 |
| BEMIPARIN | 3 | 2 |
| SULODEXIDE | 3 | 1 |
| ANTI-PSGL-1 ANTIBODY SELK2 | 2 | 1 |
| GW813893 | 2 | 1 |
| LETAXABAN | 2 | 1 |
| ODIPARCIL | 2 | 1 |
| SR-123781A | 2 | 1 |
| ONO-7684 | 1 | 1 |
| ENOXAPARIN | 0 | 23 |
Related Atlas pages
- Cohort genes: F2, F13A1, F5, HABP2, MTHFR
- Drugs: Enoxaparin, Fondaparinux, Dabigatran Etexilate, Apixaban, Dalteparin, Rivaroxaban, Edoxaban, Warfarin, Nadroparin, Heparin, Tinzaparin, Acenocoumarol, Argatroban, Betrixaban, Clarithromycin, Phenprocoumon, Dabigatran, Semuloparin, Darexaban, Tinzaparin, Abelacimab, Bemiparin, Sulodexide