Type 1 diabetes mellitus
diseaseOn this page
Also known as diabetes mellitis type 1diabetes mellitis type IIDDMimmune mediated diabetesinsulin dependent diabetesjuvenile diabetesT1DT1DMtype 1 diabetestype I diabetestype I diabetes mellitus
Summary
Type 1 diabetes mellitus (MONDO:0005147) is a disease with 75 cohort genes (1,437 GWAS associations across 95 studies) and 2,024 clinical trials. The dominant Reactome pathway is Interferon gamma signaling (13 cohort genes). Top therapeutic interventions include insulin glargine, insulin lispro, and glucagon.
At a glance
- Cohort genes: 75
- GWAS associations: 1,437
- ClinVar variants: 165
- Clinical trials: 2,024
Clinical features
No curated clinical features (Orphanet) for this disease.
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | type 1 diabetes mellitus |
| Mondo ID | MONDO:0005147 |
| MeSH | D003922 |
| OMIM | 222100 |
| Orphanet | 243377 |
| DOID | DOID:9744 |
| ICD-10-CM | E10 |
| ICD-11 | 1651053999 |
| NCIT | C2986 |
| SNOMED CT | 46635009 |
| UMLS | C0011854 |
| MedGen | 41522 |
| Is cancer (heuristic) | no |
Also known as: diabetes mellitis type 1 · diabetes mellitis type I · IDDM · immune mediated diabetes · insulin dependent diabetes · juvenile diabetes · T1D · T1DM · type 1 diabetes · type I diabetes · type I diabetes mellitus
Data availability: 165 ClinVar variants · 1,437 GWAS associations (95 studies) · 155 cell lines.
Disease family
An umbrella term covering 1 Mondo subtype.
Classification path: disease › human disease › disease by body system or component › endocrine system disorder › autoimmune disorder of endocrine system › type 1 diabetes mellitus
Related subtypes (12): autoimmune thyroid disease, immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome, autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome, autoimmune pancreatitis, autoimmune hepatitis, autoimmune polyendocrinopathy, autoimmune hypoparathyroidism, insulin autoimmune syndrome, IgG4-related sclerosing cholangitis, lymphocytic hypophysitis, autoimmune oophoritis, autoimmune primary ovarian failure
Subtypes (1): latent autoimmune diabetes in adults
Genetics & variants
GWAS landscape
1,437 GWAS associations across 95 studies. Top hits map to 11 distinct genes (as reported by GWAS).
Top associations by p-value
| rsID | p-value | Gene | Risk allele | Odds ratio |
|---|---|---|---|---|
| rs9271365 | 8e-317 | HLA-DRB1 - HLA-DQA1 | T | 1.3 |
| chr6:32684938 | 2e-308 | A | 0.29 | |
| chr6:31517324 | 2e-308 | C | 2.56 | |
| chr6:32405601 | 4e-308 | T | 6.98 | |
| chr6:32535377 | 2e-306 | A | 0.11 | |
| rs9273367 | 6e-306 | HLA-DQA1 - HLA-DQB1 | T | 0.73 |
| chr6:32234432 | 1e-305 | C | 3.25 | |
| chr6:31635993 | 1e-302 | G | 2.71 | |
| chr6:31275040 | 2e-286 | A | 0.44 | |
| chr6:32061428 | 7e-285 | A | 3.12 | |
| chr6:31951083 | 1e-283 | G | 3.1 | |
| chr6:31799896 | 4e-282 | TA | 3.08 | |
| chr6:31395249 | 3e-279 | T | 2.42 | |
| chr6:32836793 | 9e-273 | A | 2.24 | |
| chr6:30801949 | 1e-271 | T | 2.38 | |
| rs9784758 | 1e-237 | HLA-DOB - TAP2 | ? | |
| rs1770 | 2e-232 | HLA-DQB1-AS1, HLA-DQB1 | G | 4.28 |
| chr6:31135418 | 2e-219 | G | 2.57 | |
| rs1150755 | 2e-217 | TNXB | ? | |
| chr6:30964532 | 2e-202 | T | 1.99 | |
| chr6:32978829 | 9e-202 | C | 2.7 | |
| rs689 | 5e-196 | INS-IGF2, INS | A | |
| rs3763365 | 3e-191 | TAP2 - PSMB8 | ? | |
| chr6:33160210 | 2e-151 | C | 1.77 | |
| chr6:30387407 | 2e-151 | G | 2.26 | |
| rs580962 | 6e-149 | HLA-DMA | ? | |
| rs9273363 | 5e-138 | HLA-DQA1 - HLA-DQB1 | A | 5.48 |
| rs2476601 | 5e-135 | AP4B1-AS1, PTPN22 | A | 1.72 |
| rs9272346 | 5e-134 | HLA-DQA1 | G | 5.49 |
| chr6:30685004 | 2e-133 | T | 2.17 |
Top studies (by case count)
| Study | Lead author | Year | Cases | Controls | Title |
|---|---|---|---|---|---|
| GCST011539 | Inshaw JRJ | 2021 | 81,591 | 834,224 | Analysis of overlapping genetic association in type 1 and type 2 diabetes. |
| GCST90013445 | Robertson CC | 2021 | 20,065 | 33,065 | Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes. |
| GCST90014023 | Chiou J | 2021 | 18,942 | 501,638 | Interpreting type 1 diabetes risk with genetics and single-cell epigenomics. |
| GCST90013791 | Crouch DJM | 2025 | 15,573 | 158,408 | Bayesian Effect Size Ranking to Prioritise Genetic Risk Variants in Common Diseases for Follow-Up Studies. |
| GCST90013446 | Robertson CC | 2021 | 13,458 | 20,143 | Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes. |
| GCST005321 | Broce I | 2018 | 12,577 | 23,475 | Immune-related genetic enrichment in frontotemporal dementia: An analysis of genome-wide association studies. |
| GCST001255 | Bradfield JP | 2011 | 9,934 | 16,956 | A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci. |
| GCST010681 | Forgetta V | 2020 | 9,266 | 15,574 | Rare Genetic Variants of Large Effect Influence Risk of Type 1 Diabetes. |
| GCST001191 | Plagnol V | 2011 | 8,506 | 10,596 | Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases. |
| GCST000392 | Barrett JC | 2009 | 7,514 | 9,045 | Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. |
Variant details and genetic-evidence tiers
Tier distribution (top 50 variants)
| Tier | Variants |
|---|---|
| Tier 1: coding | 1 |
| Tier 2: splice/UTR | 2 |
| Tier 3: regulatory | 2 |
| Tier 4: intronic/intergenic | 45 |
MAF distribution
| Bucket | Variants |
|---|---|
| common (>=0.05) | 15 |
| low_freq (0.01-0.05) | 0 |
| rare (<0.01) | 0 |
| unknown | 35 |
Functional consequences
| Consequence | Count |
|---|---|
| unknown | 35 |
| intergenic_variant | 6 |
| intron_variant | 4 |
| splice_region_variant | 2 |
| TF_binding_site_variant | 1 |
| missense_variant | 1 |
| regulatory_region_variant | 1 |
Top variants
| rsID | Chr | Pos | Alleles | MAF | Consequence | Gene | p-value | Tier |
|---|---|---|---|---|---|---|---|---|
| rs9271365 | 6 | 32619017 | T>A,C,G | 0.05 | intergenic_variant | HLA-DRB1 - HLA-DQA1 | Tier 4: intronic/intergenic | |
| chr6:32684938 | 2e-308 | Tier 4: intronic/intergenic | ||||||
| chr6:31517324 | 2e-308 | Tier 4: intronic/intergenic | ||||||
| chr6:32405601 | 4e-308 | Tier 4: intronic/intergenic | ||||||
| chr6:32535377 | 2e-306 | Tier 4: intronic/intergenic | ||||||
| rs9273367 | 6 | 32658661 | A>C,T | 0.05 | TF_binding_site_variant | HLA-DQA1 - HLA-DQB1 | 6e-306 | Tier 3: regulatory |
| chr6:32234432 | 1e-305 | Tier 4: intronic/intergenic | ||||||
| chr6:31635993 | 1e-302 | Tier 4: intronic/intergenic | ||||||
| chr6:31275040 | 2e-286 | Tier 4: intronic/intergenic | ||||||
| chr6:32061428 | 7e-285 | Tier 4: intronic/intergenic | ||||||
| chr6:31951083 | 1e-283 | Tier 4: intronic/intergenic | ||||||
| chr6:31799896 | 4e-282 | Tier 4: intronic/intergenic | ||||||
| chr6:31395249 | 3e-279 | Tier 4: intronic/intergenic | ||||||
| chr6:32836793 | 9e-273 | Tier 4: intronic/intergenic | ||||||
| chr6:30801949 | 1e-271 | Tier 4: intronic/intergenic | ||||||
| rs9784758 | 6 | 32820734 | T>C | 0.05 | intron_variant | HLA-DOB - TAP2 | 1e-237 | Tier 4: intronic/intergenic |
| rs1770 | 6 | 32660056 | A>G,T | 0.46 | splice_region_variant | HLA-DQB1-AS1, HLA-DQB1 | 2e-232 | Tier 2: splice/UTR |
| chr6:31135418 | 2e-219 | Tier 4: intronic/intergenic | ||||||
| rs1150755 | 6 | 32070773 | C>A,G,T | 0.05 | intron_variant | TNXB | 2e-217 | Tier 4: intronic/intergenic |
| chr6:30964532 | 2e-202 | Tier 4: intronic/intergenic | ||||||
| chr6:32978829 | 9e-202 | Tier 4: intronic/intergenic | ||||||
| rs689 | 11 | 2160994 | A>G,T | 0.05 | splice_region_variant | INS-IGF2, INS | 5e-196 | Tier 2: splice/UTR |
| rs3763365 | 6 | 32839676 | A>C,G | 0.05 | intergenic_variant | TAP2 - PSMB8 | 3e-191 | Tier 4: intronic/intergenic |
| chr6:33160210 | 2e-151 | Tier 4: intronic/intergenic | ||||||
| chr6:30387407 | 2e-151 | Tier 4: intronic/intergenic | ||||||
| rs580962 | 6 | 32957915 | C>T | 0.05 | intergenic_variant | HLA-DMA | 6e-149 | Tier 4: intronic/intergenic |
| rs9273363 | 6 | 32658495 | C>A,G | 0.13 | intergenic_variant | HLA-DQA1 - HLA-DQB1 | 5e-138 | Tier 4: intronic/intergenic |
| rs2476601 | 1 | 113834946 | A>G,T | 0.103 | missense_variant | AP4B1-AS1, PTPN22 | 5e-135 | Tier 1: coding |
| rs9272346 | 6 | 32636595 | G>A,T | 0.39 | intergenic_variant | HLA-DQA1 | 5e-134 | Tier 4: intronic/intergenic |
| chr6:30685004 | 2e-133 | Tier 4: intronic/intergenic |
ClinVar germline variants
165 retrieved; paginated sample, class counts are floors:
86 uncertain significance, 28 conflicting classifications of pathogenicity, 11 pathogenic, 10 likely pathogenic, 9 benign, 8 likely benign, 7 benign/likely benign, 4 uncertain significance/uncertain risk allele, 1 pathogenic/likely pathogenic/likely risk allele, 1 pathogenic/likely pathogenic
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 129235 | NM_000545.8(HNF1A):c.608G>A (p.Arg203His) | HNF1A | Pathogenic | reviewed by expert panel |
| 14927 | NM_000545.8(HNF1A):c.872dup (p.Gly292fs) | HNF1A | Pathogenic | reviewed by expert panel |
| 14928 | NM_000545.8(HNF1A):c.1340C>T (p.Pro447Leu) | HNF1A | Pathogenic | reviewed by expert panel |
| 1693221 | NM_000545.8(HNF1A):c.1556C>T (p.Pro519Leu) | HNF1A | Pathogenic | reviewed by expert panel |
| 3574303 | NM_000545.8(HNF1A):c.1456C>T (p.Gln486Ter) | HNF1A | Pathogenic | criteria provided, single submitter |
| 36824 | NM_000545.5(HNF1A):c.598C>T (p.Arg200Trp) | HNF1A | Pathogenic | reviewed by expert panel |
| 372380 | NM_000545.8(HNF1A):c.526C>T (p.Gln176Ter) | HNF1A | Pathogenic | reviewed by expert panel |
| 379138 | NM_000545.8(HNF1A):c.788G>A (p.Arg263His) | HNF1A | Pathogenic | reviewed by expert panel |
| 420064 | NM_000545.8(HNF1A):c.685C>T (p.Arg229Ter) | HNF1A | Pathogenic | reviewed by expert panel |
| 447503 | NM_000545.8(HNF1A):c.814C>T (p.Arg272Cys) | HNF1A | Pathogenic | reviewed by expert panel |
| 562373 | NM_000545.8(HNF1A):c.392G>A (p.Arg131Gln) | HNF1A | Pathogenic | reviewed by expert panel |
| 817605 | NM_000545.8(HNF1A):c.864delinsCC (p.Gly292fs) | HNF1A | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 13392 | NM_000207.3(INS):c.163C>T (p.Arg55Cys) | INS | Pathogenic/Likely pathogenic/Likely risk allele | criteria provided, multiple submitters, no conflicts |
| 1179147 | NM_000545.8(HNF1A):c.1310-2A>G | HNF1A | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3574277 | NM_000545.8(HNF1A):c.-64_-55delinsGC | HNF1A | Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 3574278 | NM_000545.8(HNF1A):c.3G>A (p.Met1Ile) | HNF1A | Likely pathogenic | criteria provided, single submitter |
| 3574308 | NM_000545.8(HNF1A):c.1555_1556dup (p.Gln520fs) | HNF1A | Likely pathogenic | criteria provided, single submitter |
| 3574309 | NM_000545.8(HNF1A):c.1575_1576delinsA (p.Asp526fs) | HNF1A | Likely pathogenic | criteria provided, single submitter |
| 3574311 | NM_000545.8(HNF1A):c.1715del (p.Pro572fs) | HNF1A | Likely pathogenic | criteria provided, single submitter |
| 3574313 | NM_000545.8(HNF1A):c.1720delinsGGCATCCAGCACCG (p.Ser574fs) | HNF1A | Likely pathogenic | criteria provided, single submitter |
| 36832 | NM_000545.8(HNF1A):c.827C>G (p.Ala276Gly) | HNF1A | Likely pathogenic | reviewed by expert panel |
| 430837 | NM_000545.8(HNF1A):c.1501+1G>A | HNF1A | Likely pathogenic | reviewed by expert panel |
| 435424 | NM_000545.8(HNF1A):c.864del (p.Pro291fs) | HNF1A | Likely pathogenic | reviewed by expert panel |
| 994545 | NM_000545.8(HNF1A):c.1769T>C (p.Val590Ala) | C12orf43 | Uncertain significance/Uncertain risk allele | criteria provided, multiple submitters, no conflicts |
| 402948 | NM_000545.8(HNF1A):c.923C>T (p.Pro308Leu) | HNF1A | Uncertain significance/Uncertain risk allele | criteria provided, multiple submitters, no conflicts |
| 882514 | NM_000545.8(HNF1A):c.1727A>C (p.Gln576Pro) | HNF1A | Uncertain significance/Uncertain risk allele | criteria provided, multiple submitters, no conflicts |
| 884166 | NM_000545.8(HNF1A):c.499G>A (p.Val167Ile) | HNF1A | Uncertain significance/Uncertain risk allele | criteria provided, multiple submitters, no conflicts |
| 36813 | NM_000545.8(HNF1A):c.1854C>G (p.Ile618Met) | C12orf43 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 268095 | NM_014009.4(FOXP3):c.398C>T (p.Pro133Leu) | FOXP3 | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
| 1025247 | NM_000545.8(HNF1A):c.780G>A (p.Thr260=) | HNF1A | Conflicting classifications of pathogenicity | criteria provided, conflicting classifications |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 0 · Orphanet: 67 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 2
Dual-evidence genes (GWAS + Mendelian — highest-confidence targets)
| Gene | HGNC | Evidence routes |
|---|---|---|
| INS | INS | GWAS, Orphanet |
| CDKN1C | CDKN1C | GWAS, Orphanet |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| INS | Orphanet:552 | MODY |
| INS | Orphanet:99885 | Isolated permanent neonatal diabetes mellitus |
| CFB | Orphanet:544472 | Atypical hemolytic uremic syndrome with complement gene abnormality |
| SLC1A2 | Orphanet:442835 | Non-specific early-onset epileptic encephalopathy |
| STAT4 | Orphanet:117 | Behçet disease |
| STAT4 | Orphanet:536 | Systemic lupus erythematosus |
| STAT4 | Orphanet:85408 | Rheumatoid factor-negative polyarticular juvenile idiopathic arthritis |
| STAT4 | Orphanet:85410 | Oligoarticular juvenile idiopathic arthritis |
| STAT4 | Orphanet:93552 | Pediatric systemic lupus erythematosus |
| BTNL2 | Orphanet:797 | Sarcoidosis |
| SUOX | Orphanet:99731 | Isolated sulfite oxidase deficiency |
| TBP | Orphanet:98759 | Spinocerebellar ataxia type 17 |
| HNF1A | Orphanet:319303 | Chromophobe renal cell carcinoma |
| HNF1A | Orphanet:324575 | Hyperinsulinism due to HNF1A deficiency |
| HNF1A | Orphanet:404511 | Clear cell papillary renal cell carcinoma |
| HNF1A | Orphanet:552 | MODY |
| TH | Orphanet:101150 | Autosomal recessive dopa-responsive dystonia |
| TLL1 | Orphanet:99103 | Atrial septal defect, ostium secundum type |
| TLL1 | Orphanet:99106 | Atrial septal defect, ostium primum type |
| TNFAIP3 | Orphanet:536 | Systemic lupus erythematosus |
| TNFAIP3 | Orphanet:674762 | Early-onset autoinflammatory syndrome due to A20 haploinsufficiency |
| TNFSF15 | Orphanet:186 | Primary biliary cholangitis |
| CD40LG | Orphanet:101088 | X-linked hyper-IgM syndrome |
| FASLG | Orphanet:3261 | Autoimmune lymphoproliferative syndrome |
| TNXB | Orphanet:230839 | Classical-like Ehlers-Danlos syndrome type 1 |
| TNXB | Orphanet:289365 | Familial vesicoureteral reflux |
| TYK2 | Orphanet:300865 | Primary cutaneous anaplastic large cell lymphoma |
| TYK2 | Orphanet:331226 | Susceptibility to infection due to TYK2 deficiency |
| TYK2 | Orphanet:98842 | Lymphomatoid papulosis |
| UMOD | Orphanet:88950 | UMOD-related autosomal dominant tubulointerstitial kidney disease |
| IKZF1 | Orphanet:317473 | Common variable immunodeficiency phenotype due to IKAROS functional haploinsufficiency |
| IKZF1 | Orphanet:36426 | Stevens-Johnson syndrome |
| IKZF1 | Orphanet:585909 | B-lymphoblastic leukemia/lymphoma with t(9;22)(q34.1;q11.2) |
| IKZF1 | Orphanet:695172 | Combined immunodeficiency due to dimerization defective IKAROS mutation |
| IKZF1 | Orphanet:697414 | Early-onset combined immunodeficiency with low Ig due to dominant negative IKAROS mutation |
| IKZF3 | Orphanet:67038 | B-cell chronic lymphocytic leukemia |
| IKZF3 | Orphanet:699590 | Immune dysregulation with immunodeficiency due to AIOLOS haploinsufficiency |
| IKZF3 | Orphanet:699593 | Combined immunodeficiency-lymphopenia-cancer predisposing syndrome due to AIOLOS deficiency |
| BCL11A | Orphanet:251380 | Hereditary persistence of fetal hemoglobin-sickle cell disease syndrome |
| BCL11A | Orphanet:619233 | Hereditary persistence of fetal hemoglobin-intellectual disability syndrome |
| SLC4A10 | Orphanet:664430 | Neurodevelopmental disorder-slit-like lateral ventricles-intellectual disability syndrome |
| PRDM16 | Orphanet:154 | Familial isolated dilated cardiomyopathy |
| PRDM16 | Orphanet:1606 | 1p36 deletion syndrome |
| PRDM16 | Orphanet:54260 | Left ventricular noncompaction |
| BACH2 | Orphanet:714472 | Inflammatory bowel disease-autoimmunity-sinopulmonary infections-lymphadenopathy syndrome |
| MEG3 | Orphanet:254525 | Temple syndrome due to paternal 14q32.2 microdeletion |
| MEG3 | Orphanet:254528 | Kagami-Ogata syndrome due to maternal 14q32.2 microdeletion |
| MEG3 | Orphanet:254531 | Temple syndrome due to paternal 14q32.2 hypomethylation |
| MEG3 | Orphanet:254534 | Kagami-Ogata syndrome due to maternal 14q32.2 hypermethylation |
| MEG3 | Orphanet:96184 | Temple syndrome due to maternal uniparental disomy of chromosome 14 |
Cohort genes → proteins
75 cohort genes, 72 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| gwas_only | 73 |
| gwas_and_clinvar | 1 |
| multi_evidence | 1 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| INS | HGNC:6081 | ENSG00000254647 | P01308 | Insulin | gwas,clinvar |
| CFB | HGNC:1037 | ENSG00000243649 | P00751 | Complement factor B | gwas |
| RUNX3 | HGNC:10473 | ENSG00000020633 | Q13761 | Runt-related transcription factor 3 | gwas |
| SLC1A2 | HGNC:10940 | ENSG00000110436 | P43004 | Excitatory amino acid transporter 2 | gwas |
| BTF3P11 | HGNC:1126 | ENSG00000118903 | basic transcription factor 3 pseudogene 11 | gwas | |
| STAT4 | HGNC:11365 | ENSG00000138378 | Q14765 | Signal transducer and activator of transcription 4 | gwas |
| BTN3A1 | HGNC:1138 | ENSG00000026950 | O00481 | Butyrophilin subfamily 3 member A1 | gwas |
| BTNL2 | HGNC:1142 | ENSG00000204290 | Q9UIR0 | Butyrophilin-like protein 2 | gwas |
| SUOX | HGNC:11460 | ENSG00000139531 | P51687 | Sulfite oxidase, mitochondrial | gwas |
| TBP | HGNC:11588 | ENSG00000112592 | P20226 | TATA-box-binding protein | gwas |
| HNF1A | HGNC:11621 | ENSG00000135100 | P20823 | Hepatocyte nuclear factor 1-alpha | clinvar |
| DYNLT2 | HGNC:11695 | ENSG00000184786 | Q8IZS6 | Dynein light chain Tctex-type protein 2 | gwas |
| TH | HGNC:11782 | ENSG00000180176 | P07101 | Tyrosine 3-monooxygenase | gwas |
| TLL1 | HGNC:11843 | ENSG00000038295 | O43897 | Tolloid-like protein 1 | gwas |
| TNF | HGNC:11892 | ENSG00000232810 | P01375 | Tumor necrosis factor | gwas |
| TNFAIP3 | HGNC:11896 | ENSG00000118503 | P21580 | Tumor necrosis factor alpha-induced protein 3 | gwas |
| TNFRSF6B | HGNC:11921 | ENSG00000243509 | O95407 | Tumor necrosis factor receptor superfamily member 6B | gwas |
| TNFSF15 | HGNC:11931 | ENSG00000181634 | O95150 | Tumor necrosis factor ligand superfamily member 15 | gwas |
| TNFSF18 | HGNC:11932 | ENSG00000120337 | Q9UNG2 | Tumor necrosis factor ligand superfamily member 18 | gwas |
| CD40LG | HGNC:11935 | ENSG00000102245 | P29965 | CD40 ligand | gwas |
| FASLG | HGNC:11936 | ENSG00000117560 | P48023 | Tumor necrosis factor ligand superfamily member 6 | gwas |
| TNP2 | HGNC:11952 | ENSG00000178279 | Q05952 | Nuclear transition protein 2 | gwas |
| TNXB | HGNC:11976 | ENSG00000168477 | P22105 | Tenascin-X | gwas |
| EIPR1 | HGNC:12383 | ENSG00000032389 | Q53HC9 | EARP and GARP complex-interacting protein 1 | gwas |
| TYK2 | HGNC:12440 | ENSG00000105397 | P29597 | Non-receptor tyrosine-protein kinase TYK2 | gwas |
| UBASH3A | HGNC:12462 | ENSG00000160185 | P57075 | Ubiquitin-associated and SH3 domain-containing protein A | gwas |
| UMOD | HGNC:12559 | ENSG00000169344 | P07911 | Uromodulin | gwas |
| IKZF1 | HGNC:13176 | ENSG00000185811 | Q13422 | DNA-binding protein Ikaros | gwas |
| IKZF3 | HGNC:13178 | ENSG00000161405 | Q9UKT9 | Zinc finger protein Aiolos | gwas |
| IKZF4 | HGNC:13179 | ENSG00000123411 | Q9H2S9 | Zinc finger protein Eos | gwas |
| BCL11A | HGNC:13221 | ENSG00000119866 | Q9H165 | BCL11 transcription factor A | gwas |
| DEXI | HGNC:13267 | ENSG00000182108 | O95424 | Dexamethasone-induced protein | gwas |
| PRM3 | HGNC:13732 | ENSG00000178257 | Q9NNZ6 | Protamine-3 | gwas |
| SLC4A10 | HGNC:13811 | ENSG00000144290 | Q6U841 | Sodium-driven chloride bicarbonate exchanger | gwas |
| PRRC2A | HGNC:13918 | ENSG00000204469 | P48634 | Protein PRRC2A | gwas |
| TSBP1 | HGNC:13922 | ENSG00000204296 | Q5SRN2 | Testis-expressed basic protein 1 | gwas |
| C6orf15 | HGNC:13927 | ENSG00000204542 | Q6UXA7 | Uncharacterized protein C6orf15 | gwas |
| PRDM16 | HGNC:14000 | ENSG00000142611 | Q9HAZ2 | Histone-lysine N-methyltransferase PRDM16 | gwas |
| IGF2-AS | HGNC:14062 | ENSG00000099869 | Q6U949 | Putative insulin-like growth factor 2 antisense gene protein | gwas |
| BACH2 | HGNC:14078 | ENSG00000112182 | Q9BYV9 | Transcription regulator protein BACH2 | gwas |
| LPAR3 | HGNC:14298 | ENSG00000171517 | Q9UBY5 | Lysophosphatidic acid receptor 3 | gwas |
| PLEKHA1 | HGNC:14335 | ENSG00000107679 | Q9HB21 | Pleckstrin homology domain-containing family A member 1 | gwas |
| C1QTNF6 | HGNC:14343 | ENSG00000133466 | Q9BXI9 | Complement C1q tumor necrosis factor-related protein 6 | gwas |
| MEG3 | HGNC:14575 | ENSG00000214548 | maternally expressed 3 | gwas | |
| CAMK4 | HGNC:1464 | ENSG00000152495 | Q16566 | Calcium/calmodulin-dependent protein kinase type IV | gwas |
| RTL1 | HGNC:14665 | ENSG00000254656 | A6NKG5 | Retrotransposon-like protein 1 | gwas |
| QRFPR | HGNC:15565 | ENSG00000186867 | Q96P65 | Pyroglutamylated RF-amide peptide receptor | gwas |
| TAGAP | HGNC:15669 | ENSG00000164691 | Q8N103 | T-cell activation Rho GTPase-activating protein | gwas |
| SEPTIN6 | HGNC:15848 | ENSG00000125354 | Q14141 | Septin-6 | gwas |
| ORMDL3 | HGNC:16038 | ENSG00000172057 | Q8N138 | ORM1-like protein 3 | gwas |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| INS | Insulin | Insulin decreases blood glucose concentration. |
| CFB | Complement factor B | Precursor of the catalytic component of the C3 and C5 convertase complexes of the alternative pathway of the complement system, a cascade of proteins that leads to phagocytosis and breakdown of pathogens and signaling that strengthens the… |
| RUNX3 | Runt-related transcription factor 3 | Forms the heterodimeric complex core-binding factor (CBF) with CBFB. |
| SLC1A2 | Excitatory amino acid transporter 2 | Sodium-dependent, high-affinity amino acid transporter that mediates the uptake of L-glutamate and also L-aspartate and D-aspartate. |
| STAT4 | Signal transducer and activator of transcription 4 | Transcriptional regulator mainly expressed in hematopoietic cells that plays a critical role in cellular growth, differentiation and immune response. |
| BTN3A1 | Butyrophilin subfamily 3 member A1 | Plays a role in T-cell activation and in the adaptive immune response. |
| BTNL2 | Butyrophilin-like protein 2 | Negative regulator of T-cell proliferation. |
| SUOX | Sulfite oxidase, mitochondrial | Catalyzes the oxidation of sulfite to sulfate, the terminal reaction in the oxidative degradation of sulfur-containing amino acids. |
| TBP | TATA-box-binding protein | The TFIID basal transcription factor complex plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription. |
| HNF1A | Hepatocyte nuclear factor 1-alpha | Transcriptional activator that regulates the tissue specific expression of multiple genes, especially in pancreatic islet cells and in liver. |
| DYNLT2 | Dynein light chain Tctex-type protein 2 | Component of dynein, a family of motor proteins essential for movement along microtubules. |
| TH | Tyrosine 3-monooxygenase | Catalyzes the conversion of L-tyrosine to L-dihydroxyphenylalanine (L-Dopa), the rate-limiting step in the biosynthesis of catecholamines, dopamine, noradrenaline, and adrenaline. |
| TLL1 | Tolloid-like protein 1 | Protease which processes procollagen C-propeptides, such as chordin, pro-biglycan and pro-lysyl oxidase. |
| TNF | Tumor necrosis factor | Cytokine that binds to TNFRSF1A/TNFR1 and TNFRSF1B/TNFBR. |
| TNFAIP3 | Tumor necrosis factor alpha-induced protein 3 | Ubiquitin-editing enzyme that contains both ubiquitin ligase and deubiquitinase activities. |
| TNFRSF6B | Tumor necrosis factor receptor superfamily member 6B | Decoy receptor that can neutralize the cytotoxic ligands TNFS14/LIGHT, TNFSF15 and TNFSF6/FASL. |
| TNFSF15 | Tumor necrosis factor ligand superfamily member 15 | Receptor for TNFRSF25 and TNFRSF6B. |
| TNFSF18 | Tumor necrosis factor ligand superfamily member 18 | Cytokine that binds to TNFRSF18/AITR/GITR. |
| CD40LG | CD40 ligand | Cytokine that acts as a ligand to CD40/TNFRSF5. |
| FASLG | Tumor necrosis factor ligand superfamily member 6 | Cytokine that binds to TNFRSF6/FAS, a receptor that transduces the apoptotic signal into cells. |
| TNP2 | Nuclear transition protein 2 | Plays a key role in the replacement of histones to protamine in the elongating spermatids of mammals. |
| TNXB | Tenascin-X | Appears to mediate interactions between cells and the extracellular matrix. |
| EIPR1 | EARP and GARP complex-interacting protein 1 | Acts as a component of endosomal retrieval machinery that is involved in protein transport from early endosomes to either recycling endosomes or the trans-Golgi network. |
| TYK2 | Non-receptor tyrosine-protein kinase TYK2 | Tyrosine kinase of the non-receptor type involved in numerous cytokines and interferons signaling, which regulates cell growth, development, cell migration, innate and adaptive immunity. |
| UBASH3A | Ubiquitin-associated and SH3 domain-containing protein A | Interferes with CBL-mediated down-regulation and degradation of receptor-type tyrosine kinases. |
| UMOD | Uromodulin | Functions in biogenesis and organization of the apical membrane of epithelial cells of the thick ascending limb of Henle’s loop (TALH), where it promotes formation of complex filamentous gel-like structure that may play a role in the water… |
| IKZF1 | DNA-binding protein Ikaros | Transcription regulator of hematopoietic cell differentiation. |
| IKZF3 | Zinc finger protein Aiolos | Transcription factor that plays an important role in the regulation of lymphocyte differentiation. |
| IKZF4 | Zinc finger protein Eos | DNA-binding protein that binds to the 5’GGGAATRCC-3’ Ikaros-binding sequence. |
| BCL11A | BCL11 transcription factor A | Transcription factor. |
| PRM3 | Protamine-3 | Protamines substitute for histones in the chromatin of sperm during the haploid phase of spermatogenesis. |
| SLC4A10 | Sodium-driven chloride bicarbonate exchanger | Sodium/bicarbonate cotransporter which plays an important role in regulating intracellular pH. |
| PRRC2A | Protein PRRC2A | May play a role in the regulation of pre-mRNA splicing. |
| PRDM16 | Histone-lysine N-methyltransferase PRDM16 | Transcription regulator that acts both as a histone methyltransferase or chromatin adapter, depending on the context. |
| BACH2 | Transcription regulator protein BACH2 | Transcriptional regulator that acts as a repressor or activator. |
| LPAR3 | Lysophosphatidic acid receptor 3 | Receptor for lysophosphatidic acid (LPA), a mediator of diverse cellular activities. |
| PLEKHA1 | Pleckstrin homology domain-containing family A member 1 | Binds specifically to phosphatidylinositol 3,4-diphosphate (PtdIns3,4P2), but not to other phosphoinositides. |
| CAMK4 | Calcium/calmodulin-dependent protein kinase type IV | Calcium/calmodulin-dependent protein kinase that operates in the calcium-triggered CaMKK-CaMK4 signaling cascade and regulates, mainly by phosphorylation, the activity of several transcription activators, such as CREB1, MEF2D, JUN and RORA… |
| RTL1 | Retrotransposon-like protein 1 | Plays an essential role in capillaries endothelial cells for the maintenance of feto-maternal interface and for development of the placenta. |
| QRFPR | Pyroglutamylated RF-amide peptide receptor | Receptor for the orexigenic neuropeptide QRFP. |
| TAGAP | T-cell activation Rho GTPase-activating protein | May function as a GTPase-activating protein and may play important roles during T-cell activation. |
| SEPTIN6 | Septin-6 | Filament-forming cytoskeletal GTPase. |
| ORMDL3 | ORM1-like protein 3 | Plays an essential role in the homeostatic regulation of sphingolipid de novo biosynthesis by modulating the activity of the serine palmitoyltransferase (SPT) in response to ceramide levels. |
| CCR5 | C-C chemokine receptor type 5 | Receptor for a number of inflammatory CC-chemokines including CCL3/MIP-1-alpha, CCL4/MIP-1-beta and RANTES and subsequently transduces a signal by increasing the intracellular calcium ion level. |
| CCR7 | C-C chemokine receptor type 7 | Receptor for the MIP-3-beta chemokine. |
| TRIM31 | E3 ubiquitin-protein ligase TRIM31 | E3 ubiquitin-protein ligase that acts as a regulator of antiviral immune response and inflammation by mediating ubiquitination of substrates. |
| CARD9 | Caspase recruitment domain-containing protein 9 | Adapter protein that plays a key role in innate immune response against fungi by forming signaling complexes downstream of C-type lectin receptors. |
| FARP2 | FERM, ARHGEF and pleckstrin domain-containing protein 2 | Functions as a guanine nucleotide exchange factor that activates RAC1. |
| ZMIZ1 | Zinc finger MIZ domain-containing protein 1 | Acts as a transcriptional coactivator. |
| KLF3 | Krueppel-like factor 3 | Binds to the CACCC box of erythroid cell-expressed genes. |
Protein-family classification
Druggable: 22 · Difficult: 20 · Unknown: 33 · Druggable fraction: 0.29
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Transcription factor | 15 | 1.6× | 0.303 |
| Antibody/Immunoglobulin | 5 | 1.9× | 0.402 |
| Kinase | 5 | 1.9× | 0.402 |
| GPCR | 5 | 1.6× | 0.459 |
| Protease | 3 | 1.5× | 0.606 |
| Scaffold/PPI | 5 | 1.1× | 0.658 |
| Phosphatase | 1 | 1.1× | 0.764 |
| Other/Unknown | 33 | 0.8× | 0.985 |
| Enzyme (other) | 3 | 0.5× | 0.985 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| INS | Other/Unknown | no | Insulin, Insulin-like, Ins/IGF/rlx | |
| CFB | Protease | yes | 3.4.21.47 | Sushi_SCR_CCP_dom, Trypsin_dom, Peptidase_S1A |
| RUNX3 | Transcription factor | no | AML1_Runt, p53-like_TF_DNA-bd_sf, p53/RUNT-type_TF_DNA-bd_sf | |
| SLC1A2 | Other/Unknown | no | Na-dicarboxylate_symporter, Na-dicarboxylate_symporter_CS, Na:dicarbo_symporter_sf | |
| BTF3P11 | Other/Unknown | no | ||
| STAT4 | Transcription factor | no | SH2, STAT, p53-like_TF_DNA-bd_sf | |
| BTN3A1 | Antibody/Immunoglobulin | yes | B30.2/SPRY, Ig_sub, SPRY_dom | |
| BTNL2 | Antibody/Immunoglobulin | yes | Ig_C1-set, Ig_sub, Ig-like_dom | |
| SUOX | Enzyme (other) | yes | 1.8.3.1 | OxRdtase_Mopterin-bd_dom, Cyt_B5-like_heme/steroid-bd, MoCF_OxRdtse_dimer |
| TBP | Other/Unknown | no | TBP, TBP_dom_sf, TBP_CS | |
| HNF1A | Transcription factor | no | HD, HNF1b_C, HNF1a_C | |
| DYNLT2 | Other/Unknown | no | Tctex-1-like, Tctex-1-like_sf | |
| TH | Enzyme (other) | yes | 1.14.16.2 | ArAA_hydroxylase, Tyr_3_mOase, ArAA_hydroxylase_Fe/CU_BS |
| TLL1 | Protease | yes | EGF-type_Asp/Asn_hydroxyl_site, EGF, CUB_dom | |
| TNF | Other/Unknown | no | TNF_alpha, TNF_dom, TNF | |
| TNFAIP3 | Transcription factor | no | Znf_A20, OTU_dom, OTU_Deubiquitinase | |
| TNFRSF6B | Other/Unknown | no | TNFR/NGFR_Cys_rich_reg, TNFRSF6B_N, TNFRSF_decoy_receptor | |
| TNFSF15 | Other/Unknown | no | TNF_dom, TNF, Tumour_necrosis_fac-like_dom | |
| TNFSF18 | Other/Unknown | no | TNF_dom, Tumour_necrosis_fac-like_dom, TNFSF18 | |
| CD40LG | Other/Unknown | no | CD40L, TNF_dom, Tumour_necrosis_fac-like_dom | |
| FASLG | Other/Unknown | no | TNF_dom, TNF, Tumour_necrosis_fac-like_dom | |
| TNP2 | Other/Unknown | no | TP2 | |
| TNXB | Antibody/Immunoglobulin | yes | EGF, Fibrinogen_a/b/g_C_dom, FN3_dom | |
| EIPR1 | Scaffold/PPI | no | WD40_rpt, WD40/YVTN_repeat-like_dom_sf, WD40_repeat_CS | |
| TYK2 | Kinase | yes | 2.7.10.2 | FERM_domain, Prot_kinase_dom, SH2 |
| UBASH3A | Phosphatase | yes | SH3_domain, UBA-like_sf, His_Pase_superF_clade-1 | |
| UMOD | Other/Unknown | no | EGF-type_Asp/Asn_hydroxyl_site, EGF, ZP_dom | |
| IKZF1 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Ikaros_C2H2-ZF | |
| IKZF3 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Ikaros_C2H2-ZF | |
| IKZF4 | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Ikaros_C2H2-ZF | |
| BCL11A | Transcription factor | no | Znf_C2H2_type, Znf_C2H2_sf, Dev/Hematopoietic_TF | |
| DEXI | Other/Unknown | no | Dexamethasone-induced | |
| PRM3 | Other/Unknown | no | PRMP3 | |
| SLC4A10 | Other/Unknown | no | HCO3_transpt_euk, Na/HCO3_transpt, HCO3_transpt-like_TM_dom | |
| PRRC2A | Other/Unknown | no | BAT2_N, PRRC2 | |
| TSBP1 | Other/Unknown | no | TSBP1 | |
| C6orf15 | Other/Unknown | no | C6orf15 | |
| PRDM16 | Transcription factor | no | 2.1.1.367 | SET_dom, Znf_C2H2_type, Znf_C2H2_sf |
| IGF2-AS | Other/Unknown | no | ||
| BACH2 | Transcription factor | no | BTB/POZ_dom, bZIP_Maf, bZIP | |
| LPAR3 | GPCR | yes | GPCR_Rhodpsn, LPA_rcpt, LPA_rcpt_EDG7 | |
| PLEKHA1 | Scaffold/PPI | no | PH_domain, PH-like_dom_sf, PI-Interact_SigTrans_Reg | |
| C1QTNF6 | Other/Unknown | no | C1q_dom, Collagen, Tumour_necrosis_fac-like_dom | |
| MEG3 | Other/Unknown | no | ||
| CAMK4 | Kinase | yes | 2.7.11.17 | Prot_kinase_dom, Ser/Thr_kinase_AS, Kinase-like_dom_sf |
| RTL1 | Protease | yes | Peptidase_aspartic_dom_sf, RTL1/1-8/LDOC_capsid-like, RTL1-rel | |
| QRFPR | GPCR | yes | GPCR_Rhodpsn, NPY_rcpt, GPCR_Rhodpsn_7TM | |
| TAGAP | Other/Unknown | no | RhoGAP_dom, Rho_GTPase_activation_prot, ARHGAP20-like_RhoGAP | |
| SEPTIN6 | Other/Unknown | no | Septin, P-loop_NTPase, G_SEPTIN_dom | |
| ORMDL3 | Other/Unknown | no | ORMDL |
Expression context
Cohort genes with no expression data: 0.
59 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 75 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| granulocyte | 11 |
| lymph node | 8 |
| male germ line stem cell (sensu Vertebrata) in testis | 8 |
| left testis | 7 |
| ventricular zone | 5 |
| right testis | 5 |
| blood | 5 |
| cortical plate | 5 |
| adrenal tissue | 5 |
| right lobe of liver | 4 |
| Brodmann (1909) area 23 | 4 |
| primordial germ cell in gonad | 4 |
| sural nerve | 4 |
| testis | 4 |
| adenohypophysis | 4 |
| body of pancreas | 3 |
| type B pancreatic cell | 3 |
| gall bladder | 3 |
| buccal mucosa cell | 3 |
| middle temporal gyrus | 3 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| INS | 137 | tissue_specific | marker | type B pancreatic cell, islet of Langerhans, body of pancreas |
| CFB | 134 | broad | marker | right lobe of liver, liver, gall bladder |
| RUNX3 | 220 | broad | marker | granulocyte, buccal mucosa cell, lymph node |
| SLC1A2 | 227 | broad | marker | endothelial cell, entorhinal cortex, Brodmann (1909) area 23 |
| BTF3P11 | 76 | yes | male germ line stem cell (sensu Vertebrata) in testis, endometrium epithelium, Brodmann (1909) area 10 | |
| STAT4 | 201 | broad | marker | granulocyte, sperm, middle temporal gyrus |
| BTN3A1 | 272 | ubiquitous | marker | granulocyte, spleen, pancreatic ductal cell |
| BTNL2 | 106 | yes | sural nerve, ventricular zone, primordial germ cell in gonad | |
| SUOX | 267 | ubiquitous | marker | right lobe of liver, right adrenal gland, right adrenal gland cortex |
| TBP | 246 | ubiquitous | marker | left testis, right testis, testis |
| HNF1A | 81 | tissue_specific | yes | right lobe of liver, mucosa of transverse colon, liver |
| DYNLT2 | 131 | ubiquitous | yes | male germ line stem cell (sensu Vertebrata) in testis, left testis, testis |
| TH | 147 | tissue_specific | marker | substantia nigra pars reticulata, substantia nigra pars compacta, male germ line stem cell (sensu Vertebrata) in testis |
| TLL1 | 162 | broad | marker | secondary oocyte, buccal mucosa cell, primordial germ cell in gonad |
| TNF | 119 | broad | marker | granulocyte, male germ line stem cell (sensu Vertebrata) in testis, bone marrow |
| TNFAIP3 | 274 | ubiquitous | marker | vena cava, mucosa of paranasal sinus, vermiform appendix |
| TNFRSF6B | 127 | broad | yes | olfactory segment of nasal mucosa, spleen, subcutaneous adipose tissue |
| TNFSF15 | 149 | broad | marker | cartilage tissue, jejunal mucosa, duodenum |
| TNFSF18 | 98 | broad | yes | male germ line stem cell (sensu Vertebrata) in testis, gall bladder, stromal cell of endometrium |
| CD40LG | 124 | tissue_specific | marker | granulocyte, lymph node, blood |
| FASLG | 118 | tissue_specific | marker | granulocyte, blood, lymph node |
| TNP2 | 32 | tissue_specific | yes | sperm, male germ cell, left testis |
| TNXB | 134 | ubiquitous | marker | apex of heart, right adrenal gland cortex, right adrenal gland |
| EIPR1 | 249 | ubiquitous | marker | prefrontal cortex, adenohypophysis, nucleus accumbens |
| TYK2 | 288 | ubiquitous | marker | granulocyte, right hemisphere of cerebellum, adenohypophysis |
| UBASH3A | 133 | broad | marker | granulocyte, blood, lymph node |
| UMOD | 104 | tissue_specific | marker | renal medulla, adult organism, adult mammalian kidney |
| IKZF1 | 225 | broad | marker | leukocyte, monocyte, mononuclear cell |
| IKZF3 | 155 | broad | marker | granulocyte, lymph node, epithelium of nasopharynx |
| IKZF4 | 242 | ubiquitous | marker | buccal mucosa cell, left adrenal gland, adrenal cortex |
Protein interactions among cohort
Intra-cohort edges: 35.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| INS | 11,670 |
| TNF | 11,116 |
| CDK2 | 9,236 |
| TBP | 7,225 |
| FASLG | 4,373 |
| IKZF1 | 4,096 |
| TYK2 | 3,932 |
| TNFAIP3 | 3,716 |
| CARD9 | 3,636 |
| TH | 3,526 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| BACH2 | C1QTNF6 | string_interaction |
| BACH2 | TAGAP | string_interaction |
| BACH2 | UBASH3A | string_interaction |
| BTNL2 | TSBP1 | string_interaction |
| C1QTNF6 | TAGAP | string_interaction |
| C1QTNF6 | UBASH3A | string_interaction |
| C6orf15 | PSORS1C1 | string_interaction |
| CAMK4 | TNP2 | string_interaction |
| CCR7 | CD69 | string_interaction |
| CCR7 | ZMIZ1 | biogrid_interaction |
| CD40LG | ICOSLG | string_interaction |
| CDK2 | CDKN1C | biogrid_interaction, intact, string_interaction |
| DYNLT2 | PHF10 | string_interaction |
| FASLG | FNBP1 | biogrid_interaction, intact |
| FASLG | TNF | string_interaction |
| FASLG | TNFRSF6B | biogrid_interaction, intact, string_interaction |
| HNF1A | INS | string_interaction |
| ICOSLG | TNFSF18 | string_interaction |
| IKZF1 | IKZF4 | biogrid_interaction, intact |
| IKZF1 | RUNX3 | string_interaction |
| IKZF3 | IKZF4 | intact |
| IKZF3 | ORMDL3 | string_interaction |
| IKZF3 | RUNX3 | string_interaction |
| IKZF4 | SUOX | string_interaction |
| KLF3 | PRDM16 | intact |
| PHF10 | TNP2 | biogrid_interaction |
| PRM3 | TNP2 | string_interaction |
| PSORS1C1 | TSBP1 | string_interaction |
| STAT4 | TYK2 | string_interaction |
| TNF | TNFRSF6B | string_interaction |
| TNF | TSBP1 | string_interaction |
| TNF | UMOD | string_interaction |
| TNFRSF6B | TNFSF15 | biogrid_interaction, intact, string_interaction |
| TNFSF15 | TNFSF18 | string_interaction |
| TNXB | TSBP1 | string_interaction |
Structural data
PDB: 49 · AlphaFold-only: 23 · No structure: 3
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| CDK2 | P24941 | 521 |
| INS | P01308 | 382 |
| TBP | P20226 | 77 |
| TNF | P01375 | 52 |
| TYK2 | P29597 | 52 |
| BTN3A1 | O00481 | 44 |
| CFB | P00751 | 26 |
| CCR5 | P51681 | 26 |
| TNFAIP3 | P21580 | 17 |
| BCL11A | Q9H165 | 17 |
| ORMDL3 | Q8N138 | 13 |
| UMOD | P07911 | 10 |
| IKZF1 | Q13422 | 10 |
| TNFRSF6B | O95407 | 8 |
| CD40LG | P29965 | 8 |
| CARD9 | Q9H257 | 8 |
| SLC1A2 | P43004 | 7 |
| TH | P07101 | 7 |
| TNFSF15 | O95150 | 7 |
| TNFSF18 | Q9UNG2 | 7 |
| CCR7 | P32248 | 7 |
| CEL | P19835 | 7 |
| HNF1A | P20823 | 6 |
| CD69 | Q07108 | 6 |
| SEPTIN6 | Q14141 | 4 |
| RBFOX1 | Q9NWB1 | 4 |
| FASLG | P48023 | 3 |
| TNXB | P22105 | 3 |
| MYDGF | Q969H8 | 3 |
| EMSY | Q7Z589 | 3 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| EIPR1 | Q53HC9 | 89.26 |
| STAT4 | Q14765 | 86.87 |
| BTNL2 | Q9UIR0 | 85.97 |
| LPAR3 | Q9UBY5 | 81.63 |
| SBK1 | Q52WX2 | 77.87 |
| C1QTNF6 | Q9BXI9 | 77.42 |
| DYNLT2 | Q8IZS6 | 77.20 |
| FARP2 | O94887 | 76.34 |
| SLC4A10 | Q6U841 | 71.37 |
| DEXI | O95424 | 69.88 |
| CDKN1C | P49918 | 63.93 |
| TNP2 | Q05952 | 59.17 |
| RTL1 | A6NKG5 | 58.74 |
| PRM3 | Q9NNZ6 | 58.43 |
| IGF2-AS | Q6U949 | 57.72 |
| TAGAP | Q8N103 | 57.36 |
| PSORS1C1 | Q9UIG5 | 55.10 |
| KLF3 | P57682 | 54.04 |
| IKZF3 | Q9UKT9 | 48.06 |
| TSBP1 | Q5SRN2 | 45.58 |
| C6orf15 | Q6UXA7 | 43.65 |
| PRRC2A | P48634 | 40.07 |
| ZNF365 | Q70YC4 | 30.21 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 811. Enrichment computed across 250 evidence-associated genes (162 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 162 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| Interferon gamma signaling | 13 | 10.1× | 3e-07 | TRIM31, HLA-A, HLA-C, HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DRA (+5 more) |
| Phosphorylation of CD3 and TCR zeta chains | 7 | 23.5× | 4e-06 | HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DRA, HLA-DRB1, PTPN22, PTPRC |
| Interleukin-23 signaling | 5 | 39.2× | 2e-05 | STAT4, TYK2, IL23R, IL12B, JAK2 |
| MAPK1 (ERK2) activation | 5 | 35.2× | 2e-05 | TYK2, IL6R, IL6ST, JAK2, PTPN11 |
| Translocation of ZAP-70 to Immunological synapse | 6 | 23.5× | 2e-05 | HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DRA, HLA-DRB1, PTPN22 |
| MAPK3 (ERK1) activation | 5 | 32.0× | 3e-05 | TYK2, IL6R, IL6ST, JAK2, PTPN11 |
| Interleukin-6 signaling | 5 | 29.4× | 4e-05 | TYK2, IL6R, IL6ST, JAK2, PTPN11 |
| Co-inhibition by PD-1 | 6 | 19.2× | 4e-05 | HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DRA, HLA-DRB1, PTPN11 |
| Interleukin-4 and Interleukin-13 signaling | 11 | 7.0× | 4e-05 | TNF, FASLG, TYK2, IL23R, GATA3, IL10, IL12B, IL6R (+3 more) |
| RUNX1 and FOXP3 control the development of regulatory T lymphocytes (Tregs) | 4 | 28.2× | 6e-04 | CTLA4, IL2, IL2RA, FOXP3 |
| Interleukin-35 Signalling | 4 | 23.5× | 0.001 | STAT4, TYK2, IL6ST, JAK2 |
| Downstream TCR signaling | 8 | 6.3× | 0.002 | HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DRA, HLA-DRB1, PRKCQ, PSMB1, PSMB2 |
| Interleukin receptor SHC signaling | 5 | 12.6× | 0.003 | IL2, IL2RA, IL2RB, IL5, JAK2 |
| TNFs bind their physiological receptors | 5 | 12.2× | 0.003 | TNFRSF6B, TNFSF15, TNFSF18, FASLG, LTA |
| Generation of second messenger molecules | 5 | 10.7× | 0.005 | HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DRA, HLA-DRB1 |
| Interferon alpha/beta signaling | 7 | 6.6× | 0.005 | TYK2, HLA-A, HLA-C, IRF1, IRF2, IRF4, PTPN11 |
| FCGR3A-mediated IL10 synthesis | 5 | 9.0× | 0.010 | ADCY3, ADCY7, FCGR3A, IL10, ITPR3 |
| Interleukin-37 signaling | 4 | 12.8× | 0.011 | IL18R1, SMAD3, PTPN11, PTPN2 |
| TNFR2 non-canonical NF-kB pathway | 6 | 6.7× | 0.011 | TNF, CD40LG, FASLG, LTA, PSMB1, PSMB2 |
| Opioid Signalling | 5 | 8.2× | 0.014 | CAMK4, ADCY3, ADCY7, ITPR3, POMC |
| Interleukin-27 signaling | 3 | 19.2× | 0.016 | TYK2, IL6ST, JAK2 |
| Activation of STAT3 by cadherin engagement | 6 | 6.0× | 0.016 | TYK2, IL6R, IL6ST, JAK2, PSMB1, PSMB2 |
| MHC class II antigen presentation | 8 | 4.4× | 0.016 | CTSB, CTSH, KIF18A, HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DRA, HLA-DRB1 |
| Interleukin-2 signaling | 3 | 17.6× | 0.018 | IL2, IL2RA, IL2RB |
| Interleukin-20 family signaling | 4 | 10.4× | 0.018 | STAT4, TYK2, JAK2, PTPN11 |
| Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell | 8 | 4.3× | 0.018 | CD40LG, CD226, NCR3, FCGR3A, HLA-A, HLA-C, ITGB7, KLRG1 |
| Interleukin-12 signaling | 4 | 10.1× | 0.018 | STAT4, TYK2, IL12B, JAK2 |
| Interleukin-10 signaling | 5 | 7.2× | 0.018 | TNF, TYK2, CCR5, IL10, IL12B |
| Immune System | 25 | 2.0× | 0.018 | STAT4, BTN3A1, BTNL2, CD40LG, FASLG, CCR5, CARD9, CD226 (+17 more) |
| Differentiation of naive CD4+ T cells to T helper 1 cells (Th1 cells) | 3 | 16.3× | 0.018 | RUNX3, STAT4, TNF |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 217 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| immune response | 30 | 6.5× | 6e-13 | TNF, TNFSF15, TYK2, CCR5, CCR7, NCR3, CTLA4, CTSH (+22 more) |
| positive regulation of type II interferon production | 14 | 14.5× | 6e-10 | BTN3A1, TNF, TYK2, CD226, IL23R, HLA-A, HLA-DPA1, IL12B (+6 more) |
| positive regulation of interleukin-17 production | 9 | 25.0× | 3e-08 | TYK2, CARD9, IL23R, NOD2, IL12B, IL2, IL21, JAK2 (+1 more) |
| adaptive immune response | 18 | 7.0× | 6e-08 | BTN3A1, TNFSF18, CAMK4, ICOSLG, CTLA4, CTSH, ERAP2, GPR183 (+10 more) |
| positive regulation of T cell proliferation | 11 | 13.1× | 2e-07 | BTNL2, CD40LG, TYK2, IL23R, CCDC88B, HLA-DPA1, IL12B, IL21 (+3 more) |
| T cell receptor signaling pathway | 13 | 9.1× | 6e-07 | BTN3A1, BTNL2, ICOSLG, CTLA4, FOSL2, GATA3, HLA-A, HLA-DQB1 (+5 more) |
| positive regulation of T-helper 17 type immune response | 6 | 38.8× | 1e-06 | TYK2, CARD9, IL23R, IL12B, JAK2, PRKCQ |
| positive regulation of T cell mediated cytotoxicity | 8 | 18.8× | 2e-06 | IL23R, TAP2, HLA-A, HLA-C, HLA-DRA, HLA-DRB1, IL12B, PTPRC |
| T cell mediated cytotoxicity | 6 | 31.1× | 4e-06 | CTSH, TAP2, HLA-A, IL7R, MICA, PRF1 |
| positive regulation of T cell activation | 8 | 16.4× | 5e-06 | CCDC88B, HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DRA, HLA-DRB1, PRKCQ |
| regulation of T-helper cell differentiation | 4 | 77.7× | 5e-06 | GATA3, HLA-DRA, HLA-DRB1, IRF4 |
| peptide antigen assembly with MHC class II protein complex | 6 | 29.1× | 5e-06 | HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DRA, HLA-DRB1 |
| positive regulation of natural killer cell proliferation | 5 | 32.4× | 4e-05 | TYK2, IL23R, FCGR3A, IL12B, JAK2 |
| inflammatory response | 21 | 3.6× | 5e-05 | TNF, TNFAIP3, CD40LG, UMOD, CAMK4, CCR5, CCR7, TRIM31 (+13 more) |
| negative regulation of inflammatory response | 11 | 7.0× | 7e-05 | TNFAIP3, CD69, GATA3, IER3, IL10, IL2, IL2RA, SMAD3 (+3 more) |
| humoral immune response | 8 | 10.3× | 1e-04 | TNF, GPR183, AIRE, GATA3, HLA-DQB1, HLA-DRB1, LTA, NOTCH2 |
| positive regulation of cytokine production | 8 | 10.0× | 1e-04 | INS, BTN3A1, TNF, CARD9, CCDC88B, IL10, IL21, PTGER4 |
| platelet-derived growth factor receptor signaling pathway | 6 | 15.5× | 2e-04 | PLEKHA1, JAK2, NR4A3, NRP1, PTPN11, BCAR1 |
| antigen processing and presentation of exogenous peptide antigen via MHC class II | 6 | 15.0× | 3e-04 | HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DRA, HLA-DRB1 |
| interleukin-12-mediated signaling pathway | 4 | 34.5× | 3e-04 | STAT4, TYK2, IL12B, JAK2 |
| positive regulation of memory T cell differentiation | 4 | 34.5× | 3e-04 | IL23R, HLA-DRA, HLA-DRB1, IL12B |
| positive regulation of immunoglobulin production | 6 | 13.3× | 4e-04 | TNF, IL10, IL2, IL21, IL5, PTPRC |
| positive regulation of immune response | 6 | 13.3× | 4e-04 | HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DRA, HLA-DRB1 |
| positive regulation of extrinsic apoptotic signaling pathway | 6 | 12.6× | 6e-04 | TNF, TNFSF15, CD40LG, FASLG, LTA, PTPRC |
| T follicular helper cell differentiation | 4 | 25.9× | 1e-03 | ICOSLG, GPR183, IL21, ASCL2 |
| positive regulation of tumor necrosis factor production | 9 | 6.3× | 1e-03 | CARD9, LRRK2, IFIH1, FCGR3A, NOD2, IL12B, JAK2, PTPN11 (+1 more) |
| positive regulation of activated T cell proliferation | 5 | 15.5× | 0.001 | ICOSLG, IL23R, IL12B, IL2, IL2RA |
| hemopoiesis | 7 | 8.6× | 0.001 | RUNX3, KLF3, DLL1, IL10, IL7R, NOTCH2, NOTCH4 |
| positive regulation of humoral immune response mediated by circulating immunoglobulin | 3 | 46.6× | 0.001 | TNF, LTA, PTPRC |
| positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation | 3 | 46.6× | 0.001 | HLA-DRA, HLA-DRB1, FOXP3 |
Therapeutics
Drugs indicated for this disease
6 approved, 53 in late-stage (phase 3) trials. Disease-direct ChEMBL indications, not inferred from the associated-gene cohort below.
| Drug | Development status |
|---|---|
| Dasiglucagon Hydrochloride | Approved (phase 4) |
| Insulin Detemir | Approved (phase 4) |
| Insulin Glargine | Approved (phase 4) |
| Insulin Icodec | Approved (phase 4) |
| Sotagliflozin | Approved (phase 4) |
| Teplizumab | Approved (phase 4) |
| Acipimox | Phase 3 (in late-stage trials) |
| Basiliximab | Phase 3 (in late-stage trials) |
| Candesartan | Phase 3 (in late-stage trials) |
| Candesartan Cilexetil | Phase 3 (in late-stage trials) |
| Captopril | Phase 3 (in late-stage trials) |
| Cholecalciferol | Phase 3 (in late-stage trials) |
| Cyclosporine | Phase 3 (in late-stage trials) |
| DIAPEP-277 | Phase 3 (in late-stage trials) |
| Daclizumab | Phase 3 (in late-stage trials) |
| Dapagliflozin | Phase 3 (in late-stage trials) |
| Empagliflozin | Phase 3 (in late-stage trials) |
| Ergocalciferol | Phase 3 (in late-stage trials) |
| Etanercept | Phase 3 (in late-stage trials) |
| Exenatide | Phase 3 (in late-stage trials) |
| Folic Acid | Phase 3 (in late-stage trials) |
| GLUTAMATE DECARBOXYLASE 2 | Phase 3 (in late-stage trials) |
| Glucagon | Phase 3 (in late-stage trials) |
| Inositol | Phase 3 (in late-stage trials) |
| Insulin Aspart | Phase 3 (in late-stage trials) |
| Insulin Degludec | Phase 3 (in late-stage trials) |
| Insulin Efsitora Alfa | Phase 3 (in late-stage trials) |
| Insulin Glulisine | Phase 3 (in late-stage trials) |
| Insulin Human | Phase 3 (in late-stage trials) |
| Insulin Lispro | Phase 3 (in late-stage trials) |
| Insulin Peglispro | Phase 3 (in late-stage trials) |
| Insulin Pork | Phase 3 (in late-stage trials) |
| Insulin Susp Isophane Beef | Phase 3 (in late-stage trials) |
| Insulin Susp Isophane Recombinant Human | Phase 3 (in late-stage trials) |
| Insulin, Isophane | Phase 3 (in late-stage trials) |
| Ipragliflozin | Phase 3 (in late-stage trials) |
| Ladarixin | Phase 3 (in late-stage trials) |
| Lansoprazole | Phase 3 (in late-stage trials) |
| Lipoic Acid, Alpha | Phase 3 (in late-stage trials) |
| Liraglutide | Phase 3 (in late-stage trials) |
| Metformin | Phase 3 (in late-stage trials) |
| Miglitol | Phase 3 (in late-stage trials) |
| Mycophenolate Mofetil | Phase 3 (in late-stage trials) |
| Mycophenolic Acid | Phase 3 (in late-stage trials) |
| Omeprazole | Phase 3 (in late-stage trials) |
| Otelixizumab | Phase 3 (in late-stage trials) |
| Pitavastatin | Phase 3 (in late-stage trials) |
| Pramlintide | Phase 3 (in late-stage trials) |
| Quinapril | Phase 3 (in late-stage trials) |
| Ramipril | Phase 3 (in late-stage trials) |
| Reparixin | Phase 3 (in late-stage trials) |
| Ruboxistaurin | Phase 3 (in late-stage trials) |
| Semaglutide | Phase 3 (in late-stage trials) |
| Sirolimus | Phase 3 (in late-stage trials) |
| Sodium Chloride | Phase 3 (in late-stage trials) |
| Starch, Corn | Phase 3 (in late-stage trials) |
| Tacrolimus Anhydrous | Phase 3 (in late-stage trials) |
| Verapamil | Phase 3 (in late-stage trials) |
| Vildagliptin | Phase 3 (in late-stage trials) |
Earlier-phase candidates (phase 2, investigational — efficacy not yet established): .ALPHA.1-PROTEINASE INHIBITOR HUMAN, Abatacept, Abrocitinib, Acetaminophen, Albiglutide, Aldesleukin, Alefacept, Alemtuzumab, Aluminum Hydroxide, Anakinra, Atorvastatin, Baricitinib, Belatacept, Bromocriptine, Calcitriol, Canakinumab, Chlorthalidone, Cinnamon, Curcumin, Dasiglucagon, Doconexent, Dulaglutide, Ebselen, Efalizumab, Eflornithine, Enalapril, Filgrastim, Frexalimab, Ganciclovir, Gevokizumab, Glyburide, Golimumab, HOKT3, Heparin, Honey, Hyaluronidase (Human Recombinant), Hydroxychloroquine, Ibuprofen, Infliximab, Interferon Alfa, Ixekizumab, Losartan, Methyldopa, Naloxone, OMEGA-3-ACID ETHYL ESTERS, Pantoprazole, Pegfilgrastim, Pentamidine, Propranolol, Ribavirin, Ritlecitinib, Rituximab, Secukinumab, Simvastatin, Sitagliptin, Somatostatin, Sorafenib, Sulfamethoxazole, Taurolithocholic Acid, Tocilizumab, Trimethoprim, Ubidecarenone, Ustekinumab.
Drug target analysis
Approved (phase 4): 11 · Phase ≥3: 14 · Phased (≥1): 14 · Undrugged: 61
Druggability breadth: 117 of 250 evidence-associated genes (47%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Genes with an approved drug
The molecule shown is one approved compound that hits the gene — not necessarily a drug of choice or one indicated for this disease.
| Symbol | Example approved molecule |
|---|---|
| CFB | IPTACOPAN |
| BTN3A1 | ZOLEDRONIC ACID |
| TNF | PREDNISOLONE |
| TYK2 | FEDRATINIB |
| IKZF1 | POMALIDOMIDE |
| IKZF3 | POMALIDOMIDE |
| CAMK4 | RUXOLITINIB |
| CCR5 | TERFENADINE |
| SBK1 | AFATINIB |
| CDK2 | PALBOCICLIB |
| STK39 | FEDRATINIB |
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| CDK2 | 85 | 4 |
| TYK2 | 72 | 4 |
| CCR5 | 15 | 4 |
| CAMK4 | 14 | 4 |
| SBK1 | 14 | 4 |
| TNF | 12 | 4 |
| STK39 | 10 | 4 |
| CD69 | 7 | 3 |
| IKZF3 | 5 | 4 |
| IKZF1 | 3 | 4 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| IPTACOPAN | 4 | CFB |
| ZOLEDRONIC ACID | 4 | BTN3A1 |
| RISEDRONIC ACID | 4 | BTN3A1 |
| PREDNISOLONE | 4 | TNF |
| POMALIDOMIDE | 4 | IKZF1, IKZF3, TNF |
| PENTOXIFYLLINE | 4 | TNF |
| MESALAMINE | 4 | TNF |
| LENALIDOMIDE | 4 | IKZF1, IKZF3, TNF |
| FEDRATINIB | 4 | SBK1, STK39, TYK2 |
| RUXOLITINIB | 4 | CAMK4, SBK1, STK39, TYK2 |
| TOFACITINIB | 4 | TYK2 |
| UPADACITINIB | 4 | TYK2 |
| BARICITINIB | 4 | TYK2 |
| FILGOTINIB | 4 | TYK2 |
| ABROCITINIB | 4 | TYK2 |
| DEUCRAVACITINIB | 4 | TYK2 |
| MOMELOTINIB | 4 | CDK2, TYK2 |
| AXITINIB | 4 | TYK2 |
| RUXOLITINIB PHOSPHATE | 4 | TYK2 |
| INFIGRATINIB PHOSPHATE | 4 | TYK2 |
| INFIGRATINIB | 4 | TYK2 |
| PACRITINIB | 4 | CDK2, TYK2 |
| TOFACITINIB CITRATE | 4 | TYK2 |
| BOSUTINIB | 4 | STK39, TYK2 |
| PEFICITINIB | 4 | TYK2 |
| CRAVACITINIB | 4 | TYK2 |
| PAZOPANIB | 4 | TYK2 |
| NINTEDANIB | 4 | CAMK4, CDK2, SBK1, STK39, TYK2 |
| SUNITINIB | 4 | CAMK4, SBK1, STK39, TYK2 |
| DASATINIB | 4 | SBK1, TYK2 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 9.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| CDK2 | 2,469 | Binding:2394, Functional:59, ADMET:14, Toxicity:2 |
| TYK2 | 1,083 | Binding:1043, Functional:39, ADMET:1 |
| CCR5 | 409 | Binding:243, Functional:166 |
| CAMK4 | 342 | Binding:342 |
| TNF | 193 | Binding:162, Functional:31 |
| STK39 | 136 | Binding:136 |
| IKZF1 | 106 | Binding:105, Functional:1 |
| IKZF3 | 101 | Binding:100, Functional:1 |
| SBK1 | 97 | Binding:97 |
| SLC1A2 | 90 | Binding:84, Functional:6 |
| BTN3A1 | 75 | Binding:75 |
| LPAR3 | 74 | Functional:56, Binding:18 |
| CCR7 | 46 | Binding:33, Functional:13 |
| CFB | 33 | Binding:33 |
| QRFPR | 26 | Binding:13, Functional:13 |
| CD69 | 22 | Binding:22 |
| STAT4 | 20 | Binding:20 |
| INS | 8 | Binding:7, ADMET:1 |
| TH | 8 | Binding:8 |
| CD40LG | 8 | Binding:8 |
| CEL | 7 | Binding:7 |
| ICOSLG | 6 | Binding:6 |
| TLL1 | 5 | Binding:5 |
| BACH2 | 3 | Binding:3 |
| FASLG | 2 | Binding:2 |
| PRDM16 | 2 | Binding:2 |
| HNF1A | 1 | Binding:1 |
| TNFAIP3 | 1 | Binding:1 |
| UBASH3A | 1 | Binding:1 |
| PRRC2A | 1 | Binding:1 |
| PLEKHA1 | 1 | Binding:1 |
| SEPTIN6 | 1 | Binding:1 |
| ORMDL3 | 1 | Binding:1 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| CFB | 3.4.21.47 | alternative-complement-pathway C3/C5 convertase |
| SUOX | 1.8.3.1 | sulfite oxidase |
| TH | 1.14.16.2 | tyrosine 3-monooxygenase |
| TYK2 | 2.7.10.2 | non-specific protein-tyrosine kinase |
| PRDM16 | 2.1.1.367, 2.1.1.370 | [histone H3]-lysine9 N-methyltransferase, [histone H3]-lysine4 N-dimethyltransferase |
| CAMK4 | 2.7.11.17 | Ca2+/calmodulin-dependent protein kinase |
| CDK2 | 2.7.11.22 | cyclin-dependent kinase |
| STK39 | 2.7.11.1 | non-specific serine/threonine protein kinase |
| CEL | 3.1.1.13 | sterol esterase |
Cohort genes with high screening signal
≥100 ChEMBL assays — a studied-ness signal; see Therapeutics for approved-drug status.
| Symbol | ChEMBL assays |
|---|---|
| TNF | 193 |
| TYK2 | 1,083 |
| IKZF1 | 106 |
| IKZF3 | 101 |
| CAMK4 | 342 |
| CCR5 | 409 |
| CDK2 | 2,469 |
| STK39 | 136 |
Pharmacogenomics
Cohort genes with a PharmGKB record: 75; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
30 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| IPTACOPAN | 4 | CFB |
| ZOLEDRONIC ACID | 4 | BTN3A1 |
| RISEDRONIC ACID | 4 | BTN3A1 |
| PREDNISOLONE | 4 | TNF |
| POMALIDOMIDE | 4 | IKZF1, IKZF3, TNF |
| PENTOXIFYLLINE | 4 | TNF |
| MESALAMINE | 4 | TNF |
| LENALIDOMIDE | 4 | IKZF1, IKZF3, TNF |
| FEDRATINIB | 4 | SBK1, STK39, TYK2 |
| RUXOLITINIB | 4 | CAMK4, SBK1, STK39, TYK2 |
| TOFACITINIB | 4 | TYK2 |
| UPADACITINIB | 4 | TYK2 |
| BARICITINIB | 4 | TYK2 |
| FILGOTINIB | 4 | TYK2 |
| ABROCITINIB | 4 | TYK2 |
| DEUCRAVACITINIB | 4 | TYK2 |
| MOMELOTINIB | 4 | CDK2, TYK2 |
| AXITINIB | 4 | TYK2 |
| RUXOLITINIB PHOSPHATE | 4 | TYK2 |
| INFIGRATINIB PHOSPHATE | 4 | TYK2 |
| INFIGRATINIB | 4 | TYK2 |
| PACRITINIB | 4 | CDK2, TYK2 |
| TOFACITINIB CITRATE | 4 | TYK2 |
| BOSUTINIB | 4 | STK39, TYK2 |
| PEFICITINIB | 4 | TYK2 |
| CRAVACITINIB | 4 | TYK2 |
| PAZOPANIB | 4 | TYK2 |
| NINTEDANIB | 4 | CAMK4, CDK2, SBK1, STK39, TYK2 |
| SUNITINIB | 4 | CAMK4, SBK1, STK39, TYK2 |
| DASATINIB | 4 | SBK1, TYK2 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 11 | CFB, BTN3A1, TNF, TYK2, IKZF1, IKZF3, CAMK4, CCR5, SBK1, CDK2 (+1 more) |
| B | Phased (≥1) drug, not yet approved | 3 | SLC1A2, CCR7, CD69 |
| C | Druggable family + PDB, no drug | 10 | SUOX, TH, TLL1, TNXB, UBASH3A, QRFPR, CD226, ICOSLG, CEL, ADGRL2 |
| D | Druggable family + AlphaFold only, no drug | 3 | BTNL2, LPAR3, RTL1 |
| E | Difficult family or no structure, no drug | 48 | INS, RUNX3, BTF3P11, STAT4, TBP, HNF1A, DYNLT2, TNFAIP3, TNFRSF6B, TNFSF15 (+38 more) |
Undrugged target profiles
61 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| RUNX3 | 0 | IKZF1 |
| STAT4 | 20 | TYK2 |
| CDKN1C | 0 | CDK2 |
| INS | 8 | — |
| BTF3P11 | 0 | — |
| BTNL2 | 0 | — |
| SUOX | 0 | — |
| TBP | 0 | — |
| HNF1A | 1 | — |
| DYNLT2 | 0 | — |
| TH | 8 | — |
| TLL1 | 5 | — |
| TNFAIP3 | 1 | — |
| TNFRSF6B | 0 | — |
| TNFSF15 | 0 | — |
| TNFSF18 | 0 | — |
| CD40LG | 8 | — |
| FASLG | 2 | — |
| TNP2 | 0 | — |
| TNXB | 0 | — |
| EIPR1 | 0 | — |
| UBASH3A | 1 | — |
| UMOD | 0 | — |
| IKZF4 | 0 | — |
| BCL11A | 0 | — |
| DEXI | 0 | — |
| PRM3 | 0 | — |
| SLC4A10 | 0 | — |
| PRRC2A | 1 | — |
| TSBP1 | 0 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 2,024.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 400 |
| PHASE2 | 190 |
| PHASE1 | 143 |
| PHASE3 | 115 |
| PHASE4 | 106 |
| PHASE1/PHASE2 | 78 |
| EARLY_PHASE1 | 37 |
| PHASE2/PHASE3 | 31 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03463564 | PHASE4 | RECRUITING | Insulin Pump vs Multiple Daily Injections of Insulin and Glyco-metabolic Control in Type 1 Diabetic Patients |
| NCT03878459 | PHASE4 | RECRUITING | Dapagliflozin Plus Pioglitazone in T1DM |
| NCT04698330 | PHASE4 | NOT_YET_RECRUITING | Effects Of Berberine Plus Inulin On Diabetes Care in Patients With LADA |
| NCT05641753 | PHASE4 | RECRUITING | Cholesterol Lowering and Residual Risk in Diabetes, Type 1 |
| NCT06021145 | PHASE4 | RECRUITING | Effectiveness of Empagliflozin Added to Automated Insulin Delivery (AID) Systems in Adults With Type 1 Diabetes With Sub-optimal Glycemic Outcomes |
| NCT06532682 | PHASE4 | ACTIVE_NOT_RECRUITING | Efficacy of Dapagliflozin in Early Diabetic Nephropathy in Type 1 Diabetes |
| NCT06600776 | PHASE4 | NOT_YET_RECRUITING | Mealtime or Post-meal Dosing of URLi in Medtronic 780G Hybrid Closed Loop System |
| NCT06922656 | PHASE4 | NOT_YET_RECRUITING | Can the Addition of Pioglitazone to SGLT2 Inhibitor in Type 1 Diabetic Patients Amplify the Decrease in HbA1c and Prevent the Increase in Plasma Ketone Concentration? |
| NCT07293715 | PHASE4 | RECRUITING | Permissive Versus Strict Intrapartum Glucose Management in Type 1 Diabetes (PRISM-T1D) |
| NCT07427251 | PHASE4 | NOT_YET_RECRUITING | The Postprandial Hypo-Avoid Study |
| NCT00145353 | PHASE4 | UNKNOWN | Insulin NovoRapid Versus Actrapid in Treatment of Type 1 Diabetic Patients During Daily Adjustment of Insulin Dose |
| NCT00145379 | PHASE4 | COMPLETED | The Effect of Metformin in Overweight Patients With Dysregulated Type 1 Diabetes Mellitus |
| NCT00206401 | PHASE4 | COMPLETED | Lantus in the Treatment of Type 1 Diabetes Children |
| NCT00276393 | PHASE4 | COMPLETED | Treatment Trial Evaluating Long Acting Insulin in Type 1 Diabetes |
| NCT00291772 | PHASE4 | COMPLETED | Continuous Subcutaneous Infusion of Pramlintide and Insulin |
| NCT00315952 | PHASE4 | COMPLETED | Study to Estimate the Effects of Inhaled Versus Intravenous (IV) Infusion of Human Insulin in Subjects With Type 1 Diabetes |
| NCT00340613 | PHASE4 | COMPLETED | Lunch Time Insulin Injection by School Nurse for Poorly Controlled Diabetes |
| NCT00346996 | PHASE4 | COMPLETED | Insulin Analogues and Severe Hypoglycaemia |
| NCT00360984 | PHASE4 | COMPLETED | Prevention of Severe Hypoglycemia in Type 1 Diabetes |
| NCT00372086 | PHASE4 | COMPLETED | Rosiglitazone and Insulin in T1DM Adolescents |
| NCT00442767 | PHASE4 | COMPLETED | Post-meal Insulin Dosing With Adjuvant Pre-meal Pramlintide in Children With Type 1 Diabetes Mellitus |
| NCT00453934 | PHASE4 | TERMINATED | Patient Preference of h-Patch vs. Pen or Needle/Syringe as Insulin Administration Device |
| NCT00461331 | PHASE4 | COMPLETED | Comparison of Insulins Aspart and Lispro in Insulin Pumps |
| NCT00472875 | PHASE4 | UNKNOWN | Do Sulphonylureas Preserve Cortical Function During Hypoglycaemia? |
| NCT00497536 | PHASE4 | COMPLETED | Pharmacokinetics of IAsp Following CSII in Patients With T1DM |
| NCT00502138 | PHASE4 | COMPLETED | A Pilot Study of Continuous Subcutaneous Pramlintide Infusion Therapy in Patients With Type 1 Diabetes |
| NCT00505882 | PHASE4 | WITHDRAWN | Efficacy of Pramlintide on Prevention of Weight Gain Early Onset of Type 1 Diabetes |
| NCT00530023 | PHASE4 | COMPLETED | Feasibility Study for Training Pump Naïve Subjects To Use The Paradigm® System And Evaluate Effectiveness |
| NCT00542399 | PHASE4 | COMPLETED | Comparing the Metabolic Control of Once to Twice-daily Insulin Detemir Injections |
| NCT00564395 | PHASE4 | COMPLETED | Detemir: Role in Type 1 Diabetes |
| NCT00814476 | PHASE4 | COMPLETED | The Effects of Regular Home Use Vs Diabetic Team- Supported Use of the Medtronic CareLink Therapy Management System. |
| NCT00898534 | PHASE4 | COMPLETED | Effect of Immediate Hemoglobin A1c on Glycemic Control in Children With Type I Diabetes Mellitus |
| NCT00913497 | PHASE4 | COMPLETED | The Effect of Insulin Glulisine Compared With Insulin Aspart on Breakfast Post Prandial Glucose Levels in Prepubertal Children |
| NCT00978796 | PHASE4 | COMPLETED | Assessing Glucose Effects of Sitagliptin (Januvia) in Adult Patients With Type 1 Diabetes |
| NCT01019486 | PHASE4 | COMPLETED | Regadenoson Blood Flow in Type 1 Diabetes (RABIT1D) |
| NCT01235819 | PHASE4 | COMPLETED | Comparison Between GLP 1 Analogues and DPP 4 Inhibitors in Type 1 Diabetes Mellitus |
| NCT01269034 | PHASE4 | COMPLETED | New Onset Type 1 Diabetes: Role of Exenatide |
| NCT01269047 | PHASE4 | COMPLETED | Use of Exenatide and Pramlintide to Decrease Post-prandial Hyperglycemia |
| NCT01280682 | PHASE4 | COMPLETED | Immune Intervention With Rituximab to Preserve Beta Cell Function in Early Onset Type 1 Diabetes |
| NCT01331343 | PHASE4 | COMPLETED | Effectiveness Study of the Guardian RT in Type 1 Diabetics |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| INSULIN GLARGINE | 4 | 38 |
| INSULIN LISPRO | 4 | 26 |
| GLUCAGON | 4 | 17 |
| PRAMLINTIDE | 4 | 14 |
| INSULIN HUMAN | 4 | 12 |
| SOTAGLIFLOZIN | 4 | 12 |
| INSULIN ASPART | 4 | 11 |
| INSULIN DEGLUDEC | 4 | 9 |
| INSULIN GLULISINE | 4 | 9 |
| SAXAGLIPTIN ANHYDROUS | 4 | 9 |
| TEPLIZUMAB | 4 | 8 |
| SEMAGLUTIDE | 4 | 7 |
| BASILIXIMAB | 4 | 5 |
| TIRZEPATIDE | 4 | 5 |
| ALPRAZOLAM | 4 | 3 |
| ANAKINRA | 4 | 3 |
| BELATACEPT | 4 | 3 |
| EFALIZUMAB | 4 | 3 |
| EXENATIDE | 4 | 3 |
| FIBRINOGEN I 125 | 4 | 3 |
| FINERENONE | 4 | 3 |
| SITAGLIPTIN | 4 | 3 |
| USTEKINUMAB | 4 | 3 |
| ALEMTUZUMAB | 4 | 2 |
| AMINOHIPPURIC ACID | 4 | 2 |
| DAPAGLIFLOZIN PROPANEDIOL | 4 | 2 |
| EFLORNITHINE | 4 | 2 |
| EZETIMIBE | 4 | 2 |
| HYALURONIDASE | 4 | 2 |
| LANSOPRAZOLE | 4 | 2 |
Related Atlas pages
- Cohort genes: INS, CFB, RUNX3, SLC1A2, STAT4, BTN3A1, BTNL2, SUOX, TBP, HNF1A, DYNLT2, TH, TLL1, TNF, TNFAIP3, TNFRSF6B, TNFSF15, TNFSF18, CD40LG, FASLG, TNP2, TNXB, EIPR1, TYK2, UBASH3A, UMOD, IKZF1, IKZF3, IKZF4, BCL11A, DEXI, PRM3, SLC4A10, PRRC2A, TSBP1, C6orf15, PRDM16, IGF2-AS, BACH2, LPAR3, PLEKHA1, C1QTNF6, MEG3, CAMK4, RTL1, QRFPR, TAGAP, SEPTIN6, ORMDL3, CCR5, CCR7, TRIM31, CARD9, FARP2, ZMIZ1, KLF3, CD69, MYDGF, CD226, FNBP1, ICOSLG, PSORS1C1, PSORS1C3, ANKRD30A, SBK1, CDK2, STK39, CDKN1C, EMSY, ZNF365, RBFOX1, PHF10, CEL, ADGRL2
- Drugs: Insulin Glargine, Insulin Lispro, Glucagon, Pramlintide, Insulin Human, Sotagliflozin, Insulin Aspart, Insulin Degludec, Insulin Glulisine, Saxagliptin, Teplizumab, Semaglutide, Basiliximab, Tirzepatide, Alprazolam, Anakinra, Belatacept, Efalizumab, Exenatide, FIBRINOGEN I 125, Finerenone, Sitagliptin, Ustekinumab, Alemtuzumab, Aminohippuric Acid, Dapagliflozin Propanediol, Eflornithine, Ezetimibe, Hyaluronidase, Lansoprazole