X-linked myotubular myopathy
diseaseOn this page
Also known as centronuclear myopathy, X-linkedCNMXMTMmyopathy, centronuclear, X-linkedmyotubular myopathy, X-linked, X-linked recessiveX-linked centronuclear myopathyXLCNMXLMTM
Summary
X-linked myotubular myopathy (MONDO:0010683) is a disease caused by MTM1 (GenCC Definitive), with 5 cohort genes and 9 clinical trials. Top therapeutic interventions include prednisolone and resamirigene bilparvovec.
At a glance
- Prevalence: 1-9 / 1 000 000 (Europe) [Orphanet-validated]
- Causal gene: MTM1 (GenCC Definitive)
- Cohort genes: 5
- ClinVar variants: 727
- Phenotypes (HPO): 24
- Clinical trials: 9
Clinical features
Epidemiology
Prevalence records
2 prevalence record(s), Orphanet:
| Type | Class | Value | Geography | Validation |
|---|---|---|---|---|
| Point prevalence | 1-9 / 1 000 000 | 0.2 | Europe | Validated |
| Prevalence at birth | 1-9 / 100 000 | 1 | France | Validated |
Signs & symptoms
Clinical features (HPO)
24 HPO clinical features (Orphanet curated; top 24 by frequency):
| HPO ID | Term | Frequency |
|---|---|---|
| HP:0003755 | Type 1 fibers relatively smaller than type 2 fibers | Very frequent (80-99%) |
| HP:0030917 | Low APGAR score | Very frequent (80-99%) |
| HP:0000478 | Abnormality of the eye | Frequent (30-79%) |
| HP:0001319 | Neonatal hypotonia | Frequent (30-79%) |
| HP:0001558 | Decreased fetal movement | Frequent (30-79%) |
| HP:0001561 | Polyhydramnios | Frequent (30-79%) |
| HP:0001622 | Premature birth | Frequent (30-79%) |
| HP:0002033 | Poor suck | Frequent (30-79%) |
| HP:0002090 | Pneumonia | Frequent (30-79%) |
| HP:0002098 | Respiratory distress | Frequent (30-79%) |
| HP:0002205 | Recurrent respiratory infections | Frequent (30-79%) |
| HP:0003687 | Centrally nucleated skeletal muscle fibers | Frequent (30-79%) |
| HP:0004887 | Respiratory failure requiring assisted ventilation | Frequent (30-79%) |
| HP:0006829 | Severe muscular hypotonia | Frequent (30-79%) |
| HP:0008872 | Feeding difficulties in infancy | Frequent (30-79%) |
| HP:0030192 | Fatigable weakness of bulbar muscles | Frequent (30-79%) |
| HP:0030195 | Fatigable weakness of swallowing muscles | Frequent (30-79%) |
| HP:0030319 | Weakness of facial musculature | Frequent (30-79%) |
| HP:0031238 | Necklace skeletal muscle fibers | Frequent (30-79%) |
| HP:0000218 | High palate | Occasional (5-29%) |
| HP:0000268 | Dolichocephaly | Occasional (5-29%) |
| HP:0000276 | Long face | Occasional (5-29%) |
| HP:0001999 | Abnormal facial shape | Occasional (5-29%) |
| HP:0002540 | Inability to walk | Occasional (5-29%) |
Identifiers
Disease identifiers
| Field | Value |
|---|---|
| Canonical name | X-linked myotubular myopathy |
| Mondo ID | MONDO:0010683 |
| OMIM | 310400 |
| Orphanet | 596 |
| DOID | DOID:0111225 |
| ICD-10-CM | G71.220 |
| NCIT | C118781 |
| SNOMED CT | 46804001 |
| UMLS | C0410203 |
| MedGen | 98374 |
| GARD | 0011925 |
| Is cancer (heuristic) | no |
Also known as: centronuclear myopathy, X-linked · CNMX · MTM · myopathy, centronuclear, X-linked · myotubular myopathy, X-linked, X-linked recessive · X-linked centronuclear myopathy · X-linked myotubular myopathy · XLCNM · XLMTM
Data availability: 727 ClinVar variants · 2 ClinGen variant curations · 8 GenCC gene-disease records · 18 cell lines.
Disease family
An umbrella term covering 2 Mondo subtypes.
Classification path: disease › human disease › disease by etiologic mechanism › disease of genetic or genomic mechanism › hereditary disease › X-linked disease › X-linked myotubular myopathy
Related subtypes (49): X-linked Opitz G/BBB syndrome, X-linked immunoneurologic disorder, X-linked adrenal hypoplasia congenita, X-linked lissencephaly with abnormal genitalia, X-linked severe congenital neutropenia, X-linked distal spinal muscular atrophy type 3, epilepsy, X-linked 1, with variable learning disabilities and behavior disorders, Aland island eye disease, X-linked erythropoietic protoporphyria, X-linked central congenital hypothyroidism with late-onset testicular enlargement, X-linked colobomatous microphthalmia-microcephaly-intellectual disability-short stature syndrome, X-linked acrogigantism due to Xq26 microduplication, Wiskott-Aldrich syndrome, X-linked Alport syndrome, X-linked mandibulofacial dysostosis, X-linked chondrodysplasia punctata, choroideremia, cone dystrophy, X-linked, with tapetal-like sheen, diabetes insipidus, nephrogenic, X-linked, Dyggve-Melchior-Clausen syndrome, X-linked, dyskeratosis congenita, X-linked, X-linked hypohidrotic ectodermal dysplasia, X-linked Ehlers-Danlos syndrome, epidermodysplasia verruciformis, X-linked, exudative vitreoretinopathy 2, X-linked, Aarskog-Scott syndrome, X-linked, hemophilia A, X-linked hydrocephalus with stenosis of the aqueduct of Sylvius, hyper-IgM syndrome type 1, X-linked lymphoproliferative syndrome, macular dystrophy, X-linked, X-linked Emery-Dreifuss muscular dystrophy, X-linked lethal multiple pterygium syndrome, X-linked retinoschisis, spondyloepiphyseal dysplasia tarda, X-linked, X-linked cerebellar ataxia, adrenoleukodystrophy, Charcot-Marie-Tooth disease type X, X-linked dominant disease, X-linked recessive disease, X-linked hypophosphatemic rickets, X-linked sideroblastic anemia 1, X-linked deafness, X-linked cone-rod dystrophy, X-linked congenital stationary night blindness, X-linked congenital hemolytic anemia, X-linked complex neurodevelopmental disorder, X-linked intellectual disability, leukemia, acute, X-linked
Subtypes (2): X-linked myotubular myopathy-abnormal genitalia syndrome, symptomatic form of X-linked centronuclear myopathy in female carriers
Genetics & variants
GWAS landscape
No GWAS associations recorded — common-variant (GWAS) studies don’t cover this disease (typical for Mendelian / rare diseases). See the curated gene cohort and Mendelian overlap below.
Variant details and genetic-evidence tiers
ClinVar germline variants
600 retrieved; paginated sample, class counts are floors:
218 likely benign, 141 pathogenic, 106 uncertain significance, 56 likely pathogenic, 39 benign, 23 conflicting classifications of pathogenicity, 13 pathogenic/likely pathogenic, 4 benign/likely benign
| ClinVar | Variant (HGVS) | Gene | Classification | Review |
|---|---|---|---|---|
| 2500781 | NM_000252.2(MTM1):c.-76_-11del | LOC130068796 | Pathogenic | criteria provided, single submitter |
| 3243921 | NC_000023.10:g.(?149613783)(149840068_?)del | MAMLD1 | Pathogenic | criteria provided, single submitter |
| 3243933 | NC_000023.10:g.(?149613783)(149767170_?)del | MAMLD1 | Pathogenic | criteria provided, single submitter |
| 1071778 | NM_000252.3(MTM1):c.339T>A (p.Cys113Ter) | MTM1 | Pathogenic | criteria provided, single submitter |
| 1072286 | NM_000252.3(MTM1):c.1546A>T (p.Lys516Ter) | MTM1 | Pathogenic | criteria provided, single submitter |
| 1074917 | NM_000252.3(MTM1):c.1459G>T (p.Glu487Ter) | MTM1 | Pathogenic | criteria provided, single submitter |
| 1075319 | NM_000252.3(MTM1):c.1447G>T (p.Glu483Ter) | MTM1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 11053 | NM_000252.3(MTM1):c.566A>G (p.Asn189Ser) | MTM1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 11054 | NM_000252.3(MTM1):c.1190A>G (p.Tyr397Cys) | MTM1 | Pathogenic | criteria provided, single submitter |
| 11055 | NM_000252.3(MTM1):c.205C>T (p.Arg69Cys) | MTM1 | Pathogenic | reviewed by expert panel |
| 11057 | NM_000252.3(MTM1):c.141_144del | MTM1 | Pathogenic | reviewed by expert panel |
| 11058 | NM_000252.3(MTM1):c.1261-10A>G | MTM1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 11059 | NM_000252.3(MTM1):c.721C>T (p.Arg241Cys) | MTM1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 11060 | NM_000252.3(MTM1):c.670C>T (p.Arg224Ter) | MTM1 | Pathogenic | reviewed by expert panel |
| 11061 | NM_000252.3(MTM1):c.605del (p.Leu202fs) | MTM1 | Pathogenic | no assertion criteria provided |
| 1301887 | NM_000252.3(MTM1):c.63+1G>T | MTM1 | Pathogenic | criteria provided, single submitter |
| 1360711 | NM_000252.3(MTM1):c.310G>T (p.Glu104Ter) | MTM1 | Pathogenic | criteria provided, single submitter |
| 1371544 | NM_000252.3(MTM1):c.819_820dup (p.Leu274fs) | MTM1 | Pathogenic | criteria provided, single submitter |
| 1379211 | NM_000252.3(MTM1):c.548G>A (p.Trp183Ter) | MTM1 | Pathogenic | criteria provided, single submitter |
| 1457292 | NC_000023.10:g.(?149761067)(149761149_?)del | MTM1 | Pathogenic | criteria provided, single submitter |
| 1458095 | NM_000252.3(MTM1):c.1008_1009dup (p.Trp337fs) | MTM1 | Pathogenic | criteria provided, single submitter |
| 1459032 | NM_000252.3(MTM1):c.590C>T (p.Thr197Ile) | MTM1 | Pathogenic | criteria provided, single submitter |
| 158893 | NM_000252.3(MTM1):c.1053+1G>C | MTM1 | Pathogenic | criteria provided, single submitter |
| 158894 | NM_000252.3(MTM1):c.1088_1089del (p.Lys363fs) | MTM1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 158895 | NM_000252.3(MTM1):c.109C>T (p.Arg37Ter) | MTM1 | Pathogenic | criteria provided, multiple submitters, no conflicts |
| 158896 | NM_000252.3(MTM1):c.1120C>G (p.His374Asp) | MTM1 | Pathogenic | criteria provided, single submitter |
| 158897 | NM_000252.3(MTM1):c.1132G>A (p.Gly378Arg) | MTM1 | Pathogenic/Likely pathogenic | criteria provided, multiple submitters, no conflicts |
| 158898 | NM_000252.3(MTM1):c.1136G>A (p.Trp379Ter) | MTM1 | Pathogenic | criteria provided, single submitter |
| 158899 | NM_000252.3(MTM1):c.1137G>A (p.Trp379Ter) | MTM1 | Pathogenic | criteria provided, single submitter |
| 158900 | NM_000252.3(MTM1):c.1139A>T (p.Asp380Val) | MTM1 | Pathogenic | criteria provided, single submitter |
Genes & proteins
Mendelian disease overlap and somatic drivers
GenCC: 8 · Orphanet: 11 · OMIM-shared: 0 · Dual-evidence (GWAS+Mendelian): 0
GenCC gene–disease validity (cohort genes)
the Disease column is the GenCC-asserted condition — a cohort gene’s strongest validity may be for a related predisposition syndrome.
| Gene | Classification | Inheritance | Disease | Records |
|---|---|---|---|---|
| MTM1 | Definitive | X-linked | X-linked myotubular myopathy | 8 |
Orphanet rare-disease linkage (cohort genes)
| Gene | Orphanet ID | Rare disease |
|---|---|---|
| MTM1 | Orphanet:456328 | X-linked myotubular myopathy-abnormal genitalia syndrome |
| MTM1 | Orphanet:596 | X-linked centronuclear myopathy |
| MAMLD1 | Orphanet:456328 | X-linked myotubular myopathy-abnormal genitalia syndrome |
| MAMLD1 | Orphanet:95706 | Non-syndromic posterior hypospadias |
| DNM2 | Orphanet:100044 | Autosomal dominant intermediate Charcot-Marie-Tooth disease type B |
| DNM2 | Orphanet:169189 | Autosomal dominant centronuclear myopathy |
| DNM2 | Orphanet:228179 | Autosomal dominant Charcot-Marie-Tooth disease type 2M |
| DNM2 | Orphanet:363409 | Fetal akinesia-cerebral and retinal hemorrhage syndrome |
| MYH9 | Orphanet:182050 | MYH9-related syndromic thrombocytopenia |
| MYH9 | Orphanet:477742 | Nodular fasciitis |
| MYH9 | Orphanet:90635 | Rare autosomal dominant non-syndromic sensorineural deafness type DFNA |
Cohort genes → proteins
5 cohort genes, 5 distinct canonical proteins.
Evidence partition
| Subset | Genes |
|---|---|
| multi_evidence | 5 |
Cohort genes (full)
| Symbol | HGNC | Ensembl | UniProt | Name | Evidence |
|---|---|---|---|---|---|
| MTM1 | HGNC:7448 | ENSG00000171100 | Q13496 | Myotubularin | gencc,clinvar |
| CD99L2 | HGNC:18237 | ENSG00000102181 | Q8TCZ2 | CD99 antigen-like protein 2 | clinvar |
| MAMLD1 | HGNC:2568 | ENSG00000013619 | Q13495 | Mastermind-like domain-containing protein 1 | clinvar |
| DNM2 | HGNC:2974 | ENSG00000079805 | P50570 | Dynamin-2 | clinvar |
| MYH9 | HGNC:7579 | ENSG00000100345 | P35579 | Myosin-9 | clinvar |
Cohort function summary
Lead sentence per gene, UniProt-curated.
| Symbol | Protein name | Function (lead sentence) |
|---|---|---|
| MTM1 | Myotubularin | Lipid phosphatase which dephosphorylates phosphatidylinositol 3-monophosphate (PI3P) and phosphatidylinositol 3,5-bisphosphate (PI(3,5)P2). |
| CD99L2 | CD99 antigen-like protein 2 | Plays a role in a late step of leukocyte extravasation helping cells to overcome the endothelial basement membrane. |
| MAMLD1 | Mastermind-like domain-containing protein 1 | Transactivates the HES3 promoter independently of NOTCH proteins. |
| DNM2 | Dynamin-2 | Catalyzes the hydrolysis of GTP and utilizes this energy to mediate vesicle scission at plasma membrane during endocytosis and filament remodeling at many actin structures during organization of the actin cytoskeleton. |
| MYH9 | Myosin-9 | Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping. |
Protein-family classification
Druggable: 1 · Difficult: 2 · Unknown: 2 · Druggable fraction: 0.2
Family distribution
Cohort families vs a genome-wide background (hypergeometric, BH-FDR; fold = observed/expected). Counts kept; sorted by enrichment, so the catch-all Other/Unknown bucket no longer leads.
| Family | Genes | Fold | FDR |
|---|---|---|---|
| Phosphatase | 1 | 16.8× | 0.087 |
| Scaffold/PPI | 2 | 6.9× | 0.087 |
| Other/Unknown | 2 | 0.7× | 0.877 |
Per-gene assignment
| Symbol | Family | Druggable? | EC | InterPro (top 3) |
|---|---|---|---|---|
| MTM1 | Phosphatase | yes | 3.1.3.64 | Tyr_Pase_dom, Tyr_Pase_cat, GRAM |
| CD99L2 | Other/Unknown | no | CD99L2 | |
| MAMLD1 | Other/Unknown | no | MAMLD1 | |
| DNM2 | Scaffold/PPI | no | 3.6.5.5 | Dynamin_stalk, Dynamin_GTPase, PH_domain |
| MYH9 | Scaffold/PPI | no | IQ_motif_EF-hand-BS, Myosin_head_motor_dom-like, Myosin_tail |
Expression context
Cohort genes with no expression data: 0.
5 cohort genes are a single-cell marker in ≥1 SCXA experiment.
Breadth distribution (Bgee present_calls)
| Bucket | Genes |
|---|---|
| narrow (1-5 tissues) | 0 |
| moderate (6-20) | 0 |
| broad (>20) | 5 |
| unknown | 0 |
Top tissues across cohort
| Tissue | Cohort genes |
|---|---|
| germinal epithelium of ovary | 1 |
| rectum | 1 |
| secondary oocyte | 1 |
| gastrocnemius | 1 |
| prefrontal cortex | 1 |
| right frontal lobe | 1 |
| male germ line stem cell (sensu Vertebrata) in testis | 1 |
| right ovary | 1 |
| right testis | 1 |
| granulocyte | 1 |
| metanephros cortex | 1 |
| mucosa of transverse colon | 1 |
| ascending aorta | 1 |
| stromal cell of endometrium | 1 |
| thoracic aorta | 1 |
Per-gene tissue summary (top 30)
| Symbol | Bgee breadth | FANTOM5 breadth | SCXA | Top tissues |
|---|---|---|---|---|
| MTM1 | 281 | ubiquitous | marker | secondary oocyte, rectum, germinal epithelium of ovary |
| CD99L2 | 243 | ubiquitous | marker | prefrontal cortex, gastrocnemius, right frontal lobe |
| MAMLD1 | 197 | ubiquitous | marker | male germ line stem cell (sensu Vertebrata) in testis, right ovary, right testis |
| DNM2 | 234 | ubiquitous | marker | metanephros cortex, granulocyte, mucosa of transverse colon |
| MYH9 | 279 | ubiquitous | marker | stromal cell of endometrium, ascending aorta, thoracic aorta |
Protein interactions among cohort
Intra-cohort edges: 2.
Hub genes (top 10 by interactor count)
| Symbol | Interactor count |
|---|---|
| MYH9 | 5,533 |
| DNM2 | 4,715 |
| MTM1 | 1,415 |
| CD99L2 | 1,241 |
| MAMLD1 | 1,220 |
Intra-cohort edges
| A | B | Sources |
|---|---|---|
| DNM2 | MTM1 | string_interaction |
| MAMLD1 | MTM1 | string_interaction |
Structural data
PDB: 2 · AlphaFold-only: 3 · No structure: 0
Cohort genes with PDB structures (top 30)
| Symbol | UniProt | PDB entries |
|---|---|---|
| MYH9 | P35579 | 8 |
| DNM2 | P50570 | 1 |
AlphaFold-only cohort genes (top 30 by pLDDT)
| Symbol | UniProt | pLDDT |
|---|---|---|
| MTM1 | Q13496 | 90.10 |
| CD99L2 | Q8TCZ2 | 55.71 |
| MAMLD1 | Q13495 | 44.08 |
Function
Pathway analysis
Distinct Reactome pathways touched by cohort: 88. Enrichment computed across 5 evidence-associated genes (5 with Reactome annotation).
Pathways by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| Pathway | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| NOSTRIN mediated eNOS trafficking | 1 | 456.8× | 0.035 | DNM2 |
| CD163 mediating an anti-inflammatory response | 1 | 228.4× | 0.035 | MYH9 |
| Formation of annular gap junctions | 1 | 207.6× | 0.035 | DNM2 |
| Synthesis of PIPs at the late endosome membrane | 1 | 190.3× | 0.035 | MTM1 |
| Gap junction degradation | 1 | 190.3× | 0.035 | DNM2 |
| NOTCH2 intracellular domain regulates transcription | 1 | 190.3× | 0.035 | MAMLD1 |
| Retrograde neurotrophin signalling | 1 | 163.1× | 0.035 | DNM2 |
| RUNX3 regulates NOTCH signaling | 1 | 163.1× | 0.035 | MAMLD1 |
| Synthesis of PIPs at the early endosome membrane | 1 | 142.8× | 0.035 | MTM1 |
| Regulation of beta-cell development | 1 | 142.8× | 0.035 | MAMLD1 |
| Signaling by NOTCH2 | 1 | 142.8× | 0.035 | MAMLD1 |
| Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells | 1 | 142.8× | 0.035 | MAMLD1 |
| Sema4D in semaphorin signaling | 1 | 134.3× | 0.035 | MYH9 |
| RHO GTPases activate CIT | 1 | 120.2× | 0.035 | MYH9 |
| RHO GTPases Activate ROCKs | 1 | 120.2× | 0.035 | MYH9 |
| Sema4D induced cell migration and growth-cone collapse | 1 | 114.2× | 0.035 | MYH9 |
| NOTCH4 Intracellular Domain Regulates Transcription | 1 | 114.2× | 0.035 | MAMLD1 |
| RHO GTPases activate PAKs | 1 | 108.8× | 0.035 | MYH9 |
| Signaling by NOTCH3 | 1 | 103.8× | 0.035 | MAMLD1 |
| Signaling by NOTCH4 | 1 | 99.3× | 0.035 | MAMLD1 |
| NOTCH3 Intracellular Domain Regulates Transcription | 1 | 87.8× | 0.035 | MAMLD1 |
| Signaling by NOTCH1 PEST Domain Mutants in Cancer | 1 | 81.6× | 0.035 | MAMLD1 |
| Signaling by NOTCH1 in Cancer | 1 | 81.6× | 0.035 | MAMLD1 |
| Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer | 1 | 81.6× | 0.035 | MAMLD1 |
| Notch-HLH transcription pathway | 1 | 81.6× | 0.035 | MAMLD1 |
| Formation of paraxial mesoderm | 1 | 81.6× | 0.035 | MAMLD1 |
| Semaphorin interactions | 1 | 78.8× | 0.035 | MYH9 |
| Anti-inflammatory response favouring Leishmania parasite infection | 1 | 78.8× | 0.035 | MYH9 |
| Leishmania parasite growth and survival | 1 | 78.8× | 0.035 | MYH9 |
| EPHA-mediated growth cone collapse | 1 | 76.1× | 0.035 | MYH9 |
GO biological processes by enrichment
Over-representation of cohort genes vs the genome-wide background (hypergeometric test, Benjamini-Hochberg FDR; fold = observed/expected over 5 annotated cohort genes). Counts and members are kept as ground-truth; sorted by enrichment.
| GO term | Cohort genes | Fold | FDR | Sample cohort genes |
|---|---|---|---|---|
| regulation of vacuole organization | 1 | 3370.4× | 0.006 | MTM1 |
| uropod organization | 1 | 1685.2× | 0.006 | MYH9 |
| cortical granule exocytosis | 1 | 1685.2× | 0.006 | MYH9 |
| vesicle scission | 1 | 1685.2× | 0.006 | DNM2 |
| negative regulation of membrane tubulation | 1 | 1685.2× | 0.006 | DNM2 |
| negative regulation of actin filament severing | 1 | 1685.2× | 0.006 | MYH9 |
| positive regulation of protein processing in phagocytic vesicle | 1 | 1685.2× | 0.006 | MYH9 |
| positive regulation of T cell extravasation | 1 | 1685.2× | 0.006 | CD99L2 |
| cytokinetic process | 1 | 1123.5× | 0.006 | MYH9 |
| actin filament bundle organization | 1 | 1123.5× | 0.006 | DNM2 |
| membrane tubulation | 1 | 1123.5× | 0.006 | DNM2 |
| regulation of plasma membrane repair | 1 | 1123.5× | 0.006 | MYH9 |
| establishment of meiotic spindle localization | 1 | 842.6× | 0.007 | MYH9 |
| synaptic vesicle budding from presynaptic endocytic zone membrane | 1 | 674.1× | 0.007 | DNM2 |
| positive regulation of skeletal muscle tissue growth | 1 | 674.1× | 0.007 | MTM1 |
| diapedesis | 1 | 674.1× | 0.007 | CD99L2 |
| cytoplasmic actin-based contraction involved in cell motility | 1 | 674.1× | 0.007 | MYH9 |
| skeletal muscle tissue growth | 1 | 561.7× | 0.008 | MTM1 |
| meiotic spindle organization | 1 | 481.5× | 0.009 | MYH9 |
| positive regulation of neutrophil extravasation | 1 | 481.5× | 0.009 | CD99L2 |
| mitochondrion distribution | 1 | 421.3× | 0.009 | MTM1 |
| establishment of T cell polarity | 1 | 374.5× | 0.010 | MYH9 |
| spermatid differentiation | 1 | 337.0× | 0.011 | MAMLD1 |
| transferrin transport | 1 | 306.4× | 0.011 | DNM2 |
| blood vessel endothelial cell migration | 1 | 280.9× | 0.012 | MYH9 |
| regulation of axon extension | 1 | 259.3× | 0.012 | DNM2 |
| negative regulation of autophagosome assembly | 1 | 259.3× | 0.012 | MTM1 |
| post-Golgi vesicle-mediated transport | 1 | 210.7× | 0.014 | DNM2 |
| protein polymerization | 1 | 198.3× | 0.014 | DNM2 |
| protein transport | 2 | 17.6× | 0.014 | MTM1, MYH9 |
Therapeutics
Drug target analysis
Approved (phase 4): 0 · Phase ≥3: 0 · Phased (≥1): 1 · Undrugged: 4
Druggability breadth: 2 of 5 evidence-associated genes (40%) have a ChEMBL target (buckets above are over the deeply-mined display cohort).
Top cohort targets by molecule count
| Symbol | Molecules | Max phase |
|---|---|---|
| MYH9 | 1 | 2 |
| MTM1 | 0 | 0 |
| CD99L2 | 0 | 0 |
| MAMLD1 | 0 | 0 |
| DNM2 | 0 | 0 |
Drugs targeting cohort genes (top 30)
| Molecule | Max phase | Targets in cohort |
|---|---|---|
| MOLIBRESIB | 2 | MYH9 |
Bioactivity and enzyme data
Enzyme cohort genes (≥1 EC): 2.
Cohort genes with ChEMBL bioactivity (full, sorted by assay count)
| Symbol | Assays | Type breakdown |
|---|---|---|
| DNM2 | 15 | Binding:15 |
| MYH9 | 10 | Binding:10 |
Cohort enzymes (BRENDA EC)
| Symbol | EC numbers | Names |
|---|---|---|
| MTM1 | 3.1.3.64, 3.1.3.95 | phosphatidylinositol-3-phosphatase, phosphatidylinositol-3,5-bisphosphate 3-phosphatase |
| DNM2 | 3.6.5.5 | dynamin GTPase |
Pharmacogenomics
Cohort genes with a PharmGKB record: 5; with CPIC/DPWG dosing guidelines: 0.
No cohort gene has a CPIC/DPWG genotype-guided dosing guideline (PharmGKB).
Chemical tractability of cohort targets
1 approved/phased compounds have measured bioactivity against a cohort gene (and aren’t yet in disease-level trials). This is a research / tractability signal, NOT a therapeutic recommendation — a bioactivity row often reflects off-target or screening binding (e.g. promiscuous kinase inhibitors against a cohort kinase), implying no disease mechanism.
| Compound | Max phase | Cohort target (bioactivity) |
|---|---|---|
| MOLIBRESIB | 2 | MYH9 |
Druggability pyramid
Cohort genes binned by druggability tier (high → low):
| Tier | Definition | Genes | Symbols |
|---|---|---|---|
| A | Approved (phase 4 drug) | 0 | |
| B | Phased (≥1) drug, not yet approved | 1 | MYH9 |
| C | Druggable family + PDB, no drug | 0 | |
| D | Druggable family + AlphaFold only, no drug | 1 | MTM1 |
| E | Difficult family or no structure, no drug | 3 | CD99L2, MAMLD1, DNM2 |
Undrugged target profiles
4 cohort genes are undrugged. Ranked by ‘starting-point quality’ (assay depth + drugged-partner adjacency).
| Symbol | ChEMBL assays | Drugged partners (top 3) |
|---|---|---|
| MTM1 | 0 | — |
| CD99L2 | 0 | — |
| MAMLD1 | 0 | — |
| DNM2 | 15 | — |
Clinical trials & evidence
Clinical trials
Clinical trials: 9.
Phase distribution (across all retrieved trials)
| Phase | Trials |
|---|---|
| Not specified | 6 |
| PHASE1/PHASE2 | 2 |
| PHASE2/PHASE3 | 1 |
Top trials by phase / activity
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT03199469 | PHASE2/PHASE3 | ACTIVE_NOT_RECRUITING | A Study of AT132 in Young Children With X-Linked Myotubular Myopathy (XLMTM) |
| NCT07052929 | PHASE1/PHASE2 | RECRUITING | Study of ASP2957 in Male Participants With X-linked Myotubular Myopathy Who Need Ventilators |
| NCT04915846 | PHASE1/PHASE2 | TERMINATED | Tamoxifen Therapy for Myotubular Myopathy |
| NCT04064307 | Not specified | RECRUITING | Myotubular and Centronuclear Myopathy Patient Registry |
| NCT06581146 | Not specified | RECRUITING | A Study to Check Liver Health in Boys With XLMTM, a Serious Genetic Muscle Condition |
| NCT01840657 | Not specified | COMPLETED | Myotubular Myopathy Event Study |
| NCT02453152 | Not specified | COMPLETED | Respiratory Muscle Function in Untreated X-Linked Myotubular Myopathy (XLMTM) |
| NCT02704273 | Not specified | COMPLETED | A Clinical Assessment Study in X-Linked Myotubular Myopathy (XLMTM) Subjects |
| NCT05711771 | Not specified | WITHDRAWN | Medication Therapy Management (MTM) for a Medicaid Managed Care Population Within Patient-Centered Medical Homes |
Drugs tested across these trials (top 30)
| Molecule | Max phase | Trials referencing |
|---|---|---|
| PREDNISOLONE | 4 | 1 |
| RESAMIRIGENE BILPARVOVEC | 2 | 1 |